Running as unit: rb-build-arm64_12-79208.service ==================================================================================== Wed Jan 22 18:33:38 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_12) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Wed Jan 22 18:33:38 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-bTUV0tqJ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jan 22 18:33:38 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Wed Jan 22 18:33:38 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-pDBJCs' Wed Jan 22 18:33:39 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Wed Jan 22 18:33:39 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-sRvET8' ok, let's check if coot is building anywhere yet… ok, coot is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of coot in unstable on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Wed Jan 22 18:34:02 UTC 2025 I: starting to build coot/unstable/arm64 on jenkins on '2025-01-22 18:33' Wed Jan 22 18:34:02 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/79208/console.log 1737570842 arm64 unstable coot Wed Jan 22 18:34:02 UTC 2025 I: Downloading source for unstable/coot=1.1.09+dfsg-4 --2025-01-22 18:34:03-- http://deb.debian.org/debian/pool/main/c/coot/coot_1.1.09%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2962 (2.9K) [text/prs.lines.tag] Saving to: ‘coot_1.1.09+dfsg-4.dsc’ 0K .. 100% 303M=0s 2025-01-22 18:34:03 (303 MB/s) - ‘coot_1.1.09+dfsg-4.dsc’ saved [2962/2962] --2025-01-22 18:34:03-- http://deb.debian.org/debian/pool/main/c/coot/coot_1.1.09%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2962 (2.9K) [text/prs.lines.tag] Saving to: ‘coot_1.1.09+dfsg-4.dsc’ 0K .. 100% 303M=0s 2025-01-22 18:34:03 (303 MB/s) - ‘coot_1.1.09+dfsg-4.dsc’ saved [2962/2962] Wed Jan 22 18:34:03 UTC 2025 I: coot_1.1.09+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: coot Binary: coot, coot-data, coot-doc, libcootapi-dev, libcootapi1.1 Architecture: any all Version: 1.1.09+dfsg-4 Maintainer: Debian Science Maintainers Uploaders: Morten Kjeldgaard , Picca Frédéric-Emmanuel , Andrius Merkys , Alex Myczko , Homepage: https://github.com/pemsley/coot Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/science-team/coot Vcs-Git: https://salsa.debian.org/science-team/coot.git Testsuite: autopkgtest Build-Depends: bc, cmake, debhelper-compat (= 13), dh-sequence-python3, gemmi, gemmi-dev, ghostscript, imagemagick | graphicsmagick-imagemagick-compat, libasound2-dev, libblas-dev, libboost-dev, libboost-iostreams-dev, libboost-python-dev, libboost-system-dev, libboost-thread-dev, libcairo-dev, libccp4-data, libclipper-dev, libcurl4-gnutls-dev | libcurl-dev, libdw-dev, libeigen3-dev, libelf-dev, libgl-dev, libglib2.0-dev, libglm-dev, libgsl-dev, libgtkmm-4.0-dev, libmmdb2-dev, libpng-dev, libpython3-dev, librdkit-dev, libsqlite3-dev, libssm-dev, libvorbis-dev, nanobind-dev, python-gi-dev, python3-rdkit, python3-requests, python3-setuptools, sharutils, swig, tao-pegtl-dev Package-List: coot deb science optional arch=any coot-data deb science optional arch=all coot-doc deb science optional arch=all libcootapi-dev deb libdevel optional arch=any libcootapi1.1 deb libs optional arch=any Checksums-Sha1: 38095897b8a626eb7be561f437cf76fe80c7d067 88499868 coot_1.1.09+dfsg.orig.tar.xz 2f51c63b8e7e0fec4c3aa275848f53b832385ea1 53392 coot_1.1.09+dfsg-4.debian.tar.xz Checksums-Sha256: 1aff7fb1817d18c8de305c2e9822aaecd50fef76c3418c71607ad57381413b46 88499868 coot_1.1.09+dfsg.orig.tar.xz 5d99ed6aa573b9a9cee30f096067932b0c007d72802b6277ce58ca392ec051ea 53392 coot_1.1.09+dfsg-4.debian.tar.xz Files: db95ea706d91fd17ea3bca76c3ece7f1 88499868 coot_1.1.09+dfsg.orig.tar.xz dbe1dba364d2bc24e6732a3ed9a7acfc 53392 coot_1.1.09+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmeQqVQSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHh5gP/3JHnnoIZe0nBBLSgCvqumAWsBuicqUJ G0OcS+c2/xJ8BvtBz/RZxdzYhxHKKgwgQqDK694InX/AYl6QNDfIamcxGMlZay35 Xte3xIAbBKayP4xtqHQ9PVmOx5+TeX1DUGGYopO4VZC/0KqZQNF5gEQowN3eVHnJ Um4Ct7+uu2Xcgfh8BRwKZPu/enihRjkkXlui4zvZIdJkMcdnb+2jedZrKyJo4EVx Kbui3yRoI8x7SUvdB+oPNSQxm61PWjLdY/blJmnlXdIL7RJTK9e+XyDXSmzpvft/ CIf8EdAO8dPuZQ2vcitErPxrKsBHVqGbGDMfC9r+Q1/V/JastfJzM7eN/mTZqNXG /leiQ3Wtv/CoQBhiKP7DVRQgo/KT74geanTTII4xAb7414WVr/MCueEMZys3PEI0 FQ+XyFhwC+c5uuOtOqqMxt57znKd4otRYt1lj2Qt4obWtVWxfm2v5hykZJ6d4BDi geIyyvb79nYcMPjvQG8bqACa2d+jfdRBfA9QjcXtqPENEYXnTcJd/2GEAWgU/vn8 qKW8O7Bhv5lGRIvL/cbVxiBWtzmCw1S/Ozy7Nqrz7A0Ewl4OlBsh5geiK02k3/XF 58dc+YxnvCJr2yksUofOLqqS9yyNHlb/WFs5fsP8Br/gjzrNKM/ALG0SwnHXNFBz Ae3K2tndogYG =T5Xi -----END PGP SIGNATURE----- Wed Jan 22 18:34:03 UTC 2025 I: Checking whether the package is not for us Wed Jan 22 18:34:03 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Wed Jan 22 18:34:03 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Wed Jan 22 18:34:03 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Wed Jan 22 18:34:03 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-84tO7h' ==================================================================================== Wed Jan 22 18:34:04 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 coot unstable /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd 1.1.09+dfsg-4" as arguments. Wed Jan 22 18:34:04 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-GscGn707" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jan 22 18:34:05 UTC 2025 I: Downloading source for unstable/coot=1.1.09+dfsg-4 Reading package lists... NOTICE: 'coot' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/coot.git Please use: git clone https://salsa.debian.org/science-team/coot.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 88.6 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main coot 1.1.09+dfsg-4 (dsc) [2962 B] Get:2 http://deb.debian.org/debian unstable/main coot 1.1.09+dfsg-4 (tar) [88.5 MB] Get:3 http://deb.debian.org/debian unstable/main coot 1.1.09+dfsg-4 (diff) [53.4 kB] Fetched 88.6 MB in 3s (25.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'coot' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/coot.git Please use: git clone https://salsa.debian.org/science-team/coot.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 88.6 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main coot 1.1.09+dfsg-4 (dsc) [2962 B] Get:2 http://deb.debian.org/debian unstable/main coot 1.1.09+dfsg-4 (tar) [88.5 MB] Get:3 http://deb.debian.org/debian unstable/main coot 1.1.09+dfsg-4 (diff) [53.4 kB] Fetched 88.6 MB in 3s (25.7 MB/s) Download complete and in download only mode ============================================================================= Building coot in unstable on arm64 on codethink04-arm64 now. Date: Wed Jan 22 18:34:08 GMT 2025 Date UTC: Wed Jan 22 18:34:08 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 22 06:34:09 -12 2025 I: pbuilder-time-stamp: 1737570849 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [coot_1.1.09+dfsg-4.dsc] I: copying [./coot_1.1.09+dfsg.orig.tar.xz] I: copying [./coot_1.1.09+dfsg-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./coot_1.1.09+dfsg-4.dsc: unsupported subcommand dpkg-source: info: extracting coot in coot-1.1.09+dfsg dpkg-source: info: unpacking coot_1.1.09+dfsg.orig.tar.xz dpkg-source: info: unpacking coot_1.1.09+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying drop-nonexistent-RDKit-libraries.patch dpkg-source: info: applying system-fonts.patch dpkg-source: info: applying no-RPATH.patch dpkg-source: info: applying 26c08247673834ba561feeb9260c4f1f339ef4b5.patch dpkg-source: info: applying SyntaxWarning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2425547/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='d5fb6b930a154750a0b54ebba3f12a85' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2425547' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/pbuilderrc_GRwE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b1 --logfile b1/build.log coot_1.1.09+dfsg-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2425547/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: bc, cmake, debhelper-compat (= 13), dh-sequence-python3, gemmi, gemmi-dev, ghostscript, imagemagick | graphicsmagick-imagemagick-compat, libasound2-dev, libblas-dev, libboost-dev, libboost-iostreams-dev, libboost-python-dev, libboost-system-dev, libboost-thread-dev, libcairo-dev, libccp4-data, libclipper-dev, libcurl4-gnutls-dev | libcurl-dev, libdw-dev, libeigen3-dev, libelf-dev, libgl-dev, libglib2.0-dev, libglm-dev, libgsl-dev, libgtkmm-4.0-dev, libmmdb2-dev, libpng-dev, libpython3-dev, librdkit-dev, libsqlite3-dev, libssm-dev, libvorbis-dev, nanobind-dev, python-gi-dev, python3-rdkit, python3-requests, python3-setuptools, sharutils, swig, tao-pegtl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on gemmi; however: Package gemmi is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev; however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on imagemagick | graphicsmagick-imagemagick-compat; however: Package imagemagick is not installed. Package graphicsmagick-imagemagick-compat is not installed. pbuilder-satisfydepends-dummy depends on libasound2-dev; however: Package libasound2-dev is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libcairo-dev; however: Package libcairo-dev is not installed. pbuilder-satisfydepends-dummy depends on libccp4-data; however: Package libccp4-data is not installed. pbuilder-satisfydepends-dummy depends on libclipper-dev; however: Package libclipper-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl-dev is not installed. pbuilder-satisfydepends-dummy depends on libdw-dev; however: Package libdw-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libelf-dev; however: Package libelf-dev is not installed. pbuilder-satisfydepends-dummy depends on libgl-dev; however: Package libgl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libglm-dev; however: Package libglm-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtkmm-4.0-dev; however: Package libgtkmm-4.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libpython3-dev; however: Package libpython3-dev is not installed. pbuilder-satisfydepends-dummy depends on librdkit-dev; however: Package librdkit-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libssm-dev; however: Package libssm-dev is not installed. pbuilder-satisfydepends-dummy depends on libvorbis-dev; however: Package libvorbis-dev is not installed. pbuilder-satisfydepends-dummy depends on nanobind-dev; however: Package nanobind-dev is not installed. pbuilder-satisfydepends-dummy depends on python-gi-dev; however: Package python-gi-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-rdkit; however: Package python3-rdkit is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on sharutils; however: Package sharutils is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} ca-certificates{a} cmake{a} cmake-data{a} comerr-dev{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fftw-dev{a} fftw2{a} file{a} fontconfig{a} fontconfig-config{a} fonts-freefont-ttf{a} fonts-urw-base35{a} gemmi{a} gemmi-dev{a} gettext{a} gettext-base{a} ghostscript{a} gir1.2-freedesktop{a} gir1.2-freedesktop-dev{a} gir1.2-gdkpixbuf-2.0{a} gir1.2-girepository-2.0{a} gir1.2-glib-2.0{a} gir1.2-glib-2.0-dev{a} gir1.2-graphene-1.0{a} gir1.2-gtk-4.0{a} gir1.2-harfbuzz-0.0{a} gir1.2-pango-1.0{a} girepository-tools{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} ibverbs-providers{a} icu-devtools{a} imagemagick{a} imagemagick-7-common{a} imagemagick-7.q16{a} intltool-debian{a} krb5-multidev{a} libamd-comgr2{a} libamdhip64-5{a} libapparmor1{a} libarchive-zip-perl{a} libarchive13t64{a} libasound2-data{a} libasound2-dev{a} libasound2t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas-dev{a} libblas3{a} libblkid-dev{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-numpy1.83.0{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcairomm-1.16-1{a} libcairomm-1.16-dev{a} libccp4-data{a} libccp4-dev{a} libccp4c0t64{a} libccp4f0t64{a} libclipper-dev{a} libclipper2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcoordgen3{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdatrie-dev{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libdw-dev{a} libdw1t64{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libegl1-mesa-dev{a} libeigen3-dev{a} libelf-dev{a} libelf1t64{a} libepoxy-dev{a} libepoxy0{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi-dev{a} libffi8{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfontconfig-dev{a} libfontconfig1{a} libfontenc1{a} libfreetype-dev{a} libfreetype6{a} libfribidi-dev{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf-2.0-dev{a} libgdk-pixbuf2.0-bin{a} libgdk-pixbuf2.0-common{a} libgfortran5{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-1.0-1{a} libgirepository-2.0-0{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libglibmm-2.68-1t64{a} libglibmm-2.68-dev{a} libglm-dev{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgraphene-1.0-0{a} libgraphene-1.0-dev{a} libgraphite2-3{a} libgraphite2-dev{a} libgs-common{a} libgs10{a} libgs10-common{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgtk-4-1{a} libgtk-4-common{a} libgtk-4-dev{a} libgtkmm-4.0-0{a} libgtkmm-4.0-dev{a} libharfbuzz-cairo0{a} libharfbuzz-dev{a} libharfbuzz-gobject0{a} libharfbuzz-icu0{a} libharfbuzz-subset0{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-plugins{a} libhwloc15{a} libibmad5{a} libibumad3{a} libibverbs1{a} libice-dev{a} libice6{a} libicu-dev{a} libicu72{a} libidn12{a} libidn2-0{a} libidn2-dev{a} libijs-0.35{a} libinchi1.07{a} libjbig-dev{a} libjbig0{a} libjbig2dec0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-dev{a} libldap2{a} liblerc-dev{a} liblerc4{a} libllvm17t64{a} libllvm19{a} liblqr-1-0{a} libltdl7{a} liblzma-dev{a} liblzo2-2{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libmagickcore-7.q16-10{a} libmagickwand-7.q16-10{a} libmmdb2-0{a} libmmdb2-dev{a} libmount-dev{a} libmunge2{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libogg-dev{a} libogg0{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libopenmpi40{a} libp11-kit-dev{a} libp11-kit0{a} libpam-systemd{a} libpango-1.0-0{a} libpango1.0-dev{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpangomm-2.48-1t64{a} libpangomm-2.48-dev{a} libpangoxft-1.0-0{a} libpaper2{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpkgconf3{a} libpmix2t64{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraw23t64{a} librdkit-dev{a} librdkit1t64{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libselinux1-dev{a} libsensors-config{a} libsensors5{a} libsepol-dev{a} libsharpyuv-dev{a} libsharpyuv0{a} libsigc++-3.0-0{a} libsigc++-3.0-dev{a} libsm-dev{a} libsm6{a} libsqlite3-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssm-dev{a} libssm2{a} libsysprof-capture-4-dev{a} libsystemd-shared{a} libtasn1-6{a} libtasn1-6-dev{a} libthai-data{a} libthai-dev{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtool{a} libuchardet0{a} libucx0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libvorbis-dev{a} libvorbis0a{a} libvorbisenc2{a} libvorbisfile3{a} libvulkan-dev{a} libvulkan1{a} libwayland-bin{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-dev{a} libwayland-egl1{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxcomposite-dev{a} libxcomposite1{a} libxcursor-dev{a} libxcursor1{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxft-dev{a} libxft2{a} libxi-dev{a} libxi6{a} libxinerama-dev{a} libxinerama1{a} libxkbcommon-dev{a} libxkbcommon0{a} libxml2{a} libxnvctrl0{a} libxrandr-dev{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} libxshmfence1{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} nanobind-dev{a} native-architecture{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} openssl{a} pango1.0-tools{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} poppler-data{a} procps{a} python-gi-dev{a} python3{a} python3-autocommand{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-dev{a} python3-gi{a} python3-idna{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-rdkit{a} python3-requests{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} rdkit-data{a} readline-common{a} robin-map-dev{a} sensible-utils{a} sfftw-dev{a} sfftw2{a} shared-mime-info{a} sharutils{a} swig{a} systemd{a} systemd-sysv{a} tao-pegtl-dev{a} tzdata{a} uuid-dev{a} wayland-protocols{a} x11-common{a} x11proto-core-dev{a} x11proto-dev{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf bzip2-doc chrony curl fonts-droid-fallback iso-codes javascript-common krb5-locales libarchive-cpio-perl libgtk-4-bin libgtk-4-media-gstreamer libheif-plugin-aomenc libheif-plugin-x265 libkmod2 libldap-common libltdl-dev libmagickcore-7.q16-10-extra libmail-sendmail-perl libnss-systemd libpaper-utils libpng-tools librsvg2-common libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mesa-vulkan-drivers netpbm ntpsec openntpd psmisc publicsuffix systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 503 newly installed, 0 to remove and 0 not upgraded. Need to get 298 MB of archives. After unpacking 1526 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libsystemd-shared arm64 257.2-2 [1907 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libapparmor1 arm64 3.1.7-1+b3 [41.8 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 systemd arm64 257.2-2 [2922 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 systemd-sysv arm64 257.2-2 [60.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libdbus-1-3 arm64 1.16.0-1 [168 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 dbus-bin arm64 1.16.0-1 [77.7 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 dbus-session-bus-common all 1.16.0-1 [51.1 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 dbus-daemon arm64 1.16.0-1 [150 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 dbus-system-bus-common all 1.16.0-1 [52.2 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 dbus arm64 1.16.0-1 [69.4 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libfftw3-double3 arm64 3.3.10-2+b1 [337 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.45-1 [273 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 fonts-freefont-ttf all 20211204+svn4273-2 [5318 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.2 [216 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 22 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libdav1d7 arm64 1.5.0-1+b1 [248 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libheif-plugin-dav1d arm64 1.19.5-1+b1 [11.5 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libde265-0 arm64 1.0.15-1+b2 [153 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libheif-plugin-libde265 arm64 1.19.5-1+b1 [15.4 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libheif1 arm64 1.19.5-1+b1 [438 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 liblqr-1-0 arm64 0.4.2-2.1+b2 [27.0 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.5.4-2 [415 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libraw23t64 arm64 0.21.3-1+b1 [370 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 imagemagick-7-common all 8:7.1.1.43+dfsg1-1 [67.4 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libmagickcore-7.q16-10 arm64 8:7.1.1.43+dfsg1-1 [1647 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libmagickwand-7.q16-10 arm64 8:7.1.1.43+dfsg1-1 [268 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 poppler-data all 0.4.12-1 [1601 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.1-3 [852 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.1-3 [1990 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-1 [259 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.1-3 [1912 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.1-3 [740 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 68 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.0-2 [1385 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20241223 [164 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libpam-systemd arm64 257.2-2 [272 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [311 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b1 [755 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.12+dfsg-1+b1 [131 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 gtk-update-icon-cache arm64 4.16.12+ds-1 [50.2 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 hicolor-icon-theme all 0.18-1 [12.0 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 adwaita-icon-theme all 47.0-2 [463 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 bc arm64 1.07.1-4+b1 [101 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.4-2 [2267 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 102 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.1-1+b1 [324 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.4-2 [9898 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-1 [55.9 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 dbus-user-session arm64 1.16.0-1 [51.0 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libdconf1 arm64 0.40.0-5 [40.4 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 dconf-service arm64 0.40.0-5 [30.9 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 dconf-gsettings-backend arm64 0.40.0-5 [27.3 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 132 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250108 [113 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10+b1 [126 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10+b1 [54.4 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 libnl-3-200 arm64 3.7.0-0.3+b1 [57.0 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 libnl-route-3-200 arm64 3.7.0-0.3+b1 [167 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 libibverbs1 arm64 55.0-1 [58.6 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 ibverbs-providers arm64 55.0-1 [328 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 librdmacm1t64 arm64 55.0-1 [67.0 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 libfabric1 arm64 1.17.0-3.1 [480 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 libhwloc15 arm64 2.11.2-1 [141 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 libmunge2 arm64 0.5.15-4+b1 [19.4 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 libpciaccess0 arm64 0.17-3+b3 [51.2 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 libxnvctrl0 arm64 535.171.04-1+b1 [14.1 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 ocl-icd-libopencl1 arm64 2.3.2-1+b2 [39.3 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 libhwloc-plugins arm64 2.11.2-1 [17.9 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 libpmix2t64 arm64 5.0.6-1 [577 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 libllvm17t64 arm64 1:17.0.6-20+b1 [21.3 MB] Get: 168 http://deb.debian.org/debian unstable/main arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3+b2 [12.1 MB] Get: 169 http://deb.debian.org/debian unstable/main arm64 libdrm-common all 2.4.123-1 [8084 B] Get: 170 http://deb.debian.org/debian unstable/main arm64 libdrm2 arm64 2.4.123-1 [38.0 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [21.6 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 libnuma1 arm64 2.0.18-1+b1 [21.8 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 libhsakmt1 arm64 6.1.2+ds-1 [56.9 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 libhsa-runtime64-1 arm64 6.1.2-2 [300 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 libamdhip64-5 arm64 5.7.1-5 [8823 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 libibumad3 arm64 55.0-1 [27.2 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 libibmad5 arm64 55.0-1 [41.3 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 libucx0 arm64 1.17.0+ds-3 [959 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 libopenmpi40 arm64 5.0.6-3 [2087 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 fftw2 arm64 2.1.5-7+b1 [203 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 fftw-dev arm64 2.1.5-7+b1 [242 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.15.0-2 [462 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 gemmi arm64 0.6.5+ds-2+b2 [1123 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Get: 185 http://deb.debian.org/debian unstable/main arm64 gemmi-dev arm64 0.6.5+ds-2+b2 [1087 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 libgs-common all 10.04.0~dfsg-2 [148 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 libgs10-common all 10.04.0~dfsg-2 [475 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 libavahi-common-data arm64 0.8-16 [112 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 libavahi-common3 arm64 0.8-16 [43.3 kB] Get: 190 http://deb.debian.org/debian unstable/main arm64 libavahi-client3 arm64 0.8-16 [46.7 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 libcups2t64 arm64 2.4.10-2+b1 [236 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 libidn12 arm64 1.42-2+b1 [80.2 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 libijs-0.35 arm64 0.35-15.1+b2 [14.9 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 libjbig2dec0 arm64 0.20-1+b3 [60.1 kB] Get: 195 http://deb.debian.org/debian unstable/main arm64 libpaper2 arm64 2.2.5-0.3 [16.3 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 libgs10 arm64 10.04.0~dfsg-2+b1 [2351 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 ghostscript arm64 10.04.0~dfsg-2+b1 [51.0 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 gir1.2-glib-2.0 arm64 2.82.4-2 [194 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b3 [27.2 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 libcairo-gobject2 arm64 1.18.2-2 [130 kB] Get: 208 http://deb.debian.org/debian unstable/main arm64 gir1.2-freedesktop arm64 1.82.0-4 [60.2 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 gir1.2-glib-2.0-dev arm64 2.82.4-2 [903 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 gir1.2-freedesktop-dev arm64 1.82.0-4 [51.3 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 gir1.2-gdkpixbuf-2.0 arm64 2.42.12+dfsg-1+b1 [14.3 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 libgirepository-1.0-1 arm64 1.82.0-4 [108 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 gir1.2-girepository-2.0 arm64 1.82.0-4 [39.4 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 libgraphene-1.0-0 arm64 1.10.8-5 [42.1 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 gir1.2-graphene-1.0 arm64 1.10.8-5 [12.8 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-gobject0 arm64 10.2.0-1 [31.9 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 gir1.2-harfbuzz-0.0 arm64 10.2.0-1 [42.0 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 222 http://deb.debian.org/debian unstable/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 libpango-1.0-0 arm64 1.56.1-1 [213 kB] Get: 225 http://deb.debian.org/debian unstable/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [52.8 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [33.8 kB] Get: 227 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b3 [51.6 kB] Get: 228 http://deb.debian.org/debian unstable/main arm64 libpangoxft-1.0-0 arm64 1.56.1-1 [27.0 kB] Get: 229 http://deb.debian.org/debian unstable/main arm64 gir1.2-pango-1.0 arm64 1.56.1-1 [39.0 kB] Get: 230 http://deb.debian.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3+b1 [49.6 kB] Get: 231 http://deb.debian.org/debian unstable/main arm64 libcairo-script-interpreter2 arm64 1.18.2-2 [57.4 kB] Get: 232 http://deb.debian.org/debian unstable/main arm64 libcloudproviders0 arm64 0.3.6-1+b1 [27.7 kB] Get: 233 http://deb.debian.org/debian unstable/main arm64 libcolord2 arm64 1.4.7-1+b2 [130 kB] Get: 234 http://deb.debian.org/debian unstable/main arm64 libepoxy0 arm64 1.5.10-2 [200 kB] Get: 235 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-subset0 arm64 10.2.0-1 [511 kB] Get: 236 http://deb.debian.org/debian unstable/main arm64 libvulkan1 arm64 1.4.304.0-1 [126 kB] Get: 237 http://deb.debian.org/debian unstable/main arm64 libwayland-client0 arm64 1.23.0-1+b1 [26.0 kB] Get: 238 http://deb.debian.org/debian unstable/main arm64 libwayland-egl1 arm64 1.23.0-1+b1 [5768 B] Get: 239 http://deb.debian.org/debian unstable/main arm64 libxfixes3 arm64 1:6.0.0-2+b3 [20.4 kB] Get: 240 http://deb.debian.org/debian unstable/main arm64 libxcursor1 arm64 1:1.2.3-1 [39.3 kB] Get: 241 http://deb.debian.org/debian unstable/main arm64 libxdamage1 arm64 1:1.1.6-1+b2 [15.6 kB] Get: 242 http://deb.debian.org/debian unstable/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB] Get: 243 http://deb.debian.org/debian unstable/main arm64 libxinerama1 arm64 2:1.1.4-3+b3 [16.1 kB] Get: 244 http://deb.debian.org/debian unstable/main arm64 xkb-data all 2.42-1 [790 kB] Get: 245 http://deb.debian.org/debian unstable/main arm64 libxkbcommon0 arm64 1.7.0-2 [106 kB] Get: 246 http://deb.debian.org/debian unstable/main arm64 libxrandr2 arm64 2:1.5.4-1+b2 [36.0 kB] Get: 247 http://deb.debian.org/debian unstable/main arm64 libglvnd0 arm64 1.7.0-1+b2 [41.6 kB] Get: 248 http://deb.debian.org/debian unstable/main arm64 libgles2 arm64 1.7.0-1+b2 [18.0 kB] Get: 249 http://deb.debian.org/debian unstable/main arm64 libgtk-4-common all 4.16.12+ds-1 [2759 kB] Get: 250 http://deb.debian.org/debian unstable/main arm64 libgtk-4-1 arm64 4.16.12+ds-1 [2938 kB] Get: 251 http://deb.debian.org/debian unstable/main arm64 gir1.2-gtk-4.0 arm64 4.16.12+ds-1 [210 kB] Get: 252 http://deb.debian.org/debian unstable/main arm64 native-architecture all 0.2.3 [2108 B] Get: 253 http://deb.debian.org/debian unstable/main arm64 libgirepository-2.0-0 arm64 2.82.4-2 [130 kB] Get: 254 http://deb.debian.org/debian unstable/main arm64 girepository-tools arm64 2.82.4-2 [135 kB] Get: 255 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 72.1-6 [196 kB] Get: 256 http://deb.debian.org/debian unstable/main arm64 imagemagick-7.q16 arm64 8:7.1.1.43+dfsg1-1 [726 kB] Get: 257 http://deb.debian.org/debian unstable/main arm64 imagemagick arm64 8:7.1.1.43+dfsg1-1 [20.0 kB] Get: 258 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-4 [56.9 kB] Get: 259 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4 [41.0 kB] Get: 260 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-4 [41.0 kB] Get: 261 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-4 [53.1 kB] Get: 262 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-4 [126 kB] Get: 263 http://deb.debian.org/debian unstable/main arm64 libasound2-data all 1.2.13-1 [21.1 kB] Get: 264 http://deb.debian.org/debian unstable/main arm64 libasound2t64 arm64 1.2.13-1+b1 [338 kB] Get: 265 http://deb.debian.org/debian unstable/main arm64 libasound2-dev arm64 1.2.13-1+b1 [120 kB] Get: 266 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 267 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.0-4 [106 kB] Get: 268 http://deb.debian.org/debian unstable/main arm64 uuid-dev arm64 2.40.4-1 [48.2 kB] Get: 269 http://deb.debian.org/debian unstable/main arm64 libblkid-dev arm64 2.40.4-1 [210 kB] Get: 270 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-4 [10.6 MB] Get: 271 http://deb.debian.org/debian unstable/main arm64 libboost-atomic1.83.0 arm64 1.83.0-4 [233 kB] Get: 272 http://deb.debian.org/debian unstable/main arm64 libboost-atomic1.83-dev arm64 1.83.0-4 [234 kB] Get: 273 http://deb.debian.org/debian unstable/main arm64 libboost-chrono1.83.0t64 arm64 1.83.0-4 [239 kB] Get: 274 http://deb.debian.org/debian unstable/main arm64 libboost-chrono1.83-dev arm64 1.83.0-4 [245 kB] Get: 275 http://deb.debian.org/debian unstable/main arm64 libboost-date-time1.83.0 arm64 1.83.0-4 [231 kB] Get: 276 http://deb.debian.org/debian unstable/main arm64 libboost-serialization1.83.0 arm64 1.83.0-4 [325 kB] Get: 277 http://deb.debian.org/debian unstable/main arm64 libboost-serialization1.83-dev arm64 1.83.0-4 [375 kB] Get: 278 http://deb.debian.org/debian unstable/main arm64 libboost-date-time1.83-dev arm64 1.83.0-4 [239 kB] Get: 279 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 280 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83.0 arm64 1.83.0-4 [314 kB] Get: 281 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 72.1-6 [10.3 MB] Get: 282 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83-dev arm64 1.83.0-4 [338 kB] Get: 283 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-4 [261 kB] Get: 284 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 285 http://deb.debian.org/debian unstable/main arm64 libboost-python1.83.0 arm64 1.83.0-4 [309 kB] Get: 286 http://deb.debian.org/debian unstable/main arm64 libboost-numpy1.83.0 arm64 1.83.0-4 [241 kB] Get: 287 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.1-3 [1971 kB] Get: 288 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 289 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 290 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.1-3 [4710 kB] Get: 291 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.13.1-2 [10.2 kB] Get: 292 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.1-3 [504 kB] Get: 293 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 294 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 295 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 296 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.13.1-2 [26.1 kB] Get: 297 http://deb.debian.org/debian unstable/main arm64 libboost-python1.83-dev arm64 1.83.0-4 [323 kB] Get: 298 http://deb.debian.org/debian unstable/main arm64 libboost-python-dev arm64 1.83.0.2+b2 [3880 B] Get: 299 http://deb.debian.org/debian unstable/main arm64 libboost-system1.83.0 arm64 1.83.0-4 [231 kB] Get: 300 http://deb.debian.org/debian unstable/main arm64 libboost-system1.83-dev arm64 1.83.0-4 [231 kB] Get: 301 http://deb.debian.org/debian unstable/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B] Get: 302 http://deb.debian.org/debian unstable/main arm64 libboost-thread1.83.0 arm64 1.83.0-4 [265 kB] Get: 303 http://deb.debian.org/debian unstable/main arm64 libboost-thread1.83-dev arm64 1.83.0-4 [277 kB] Get: 304 http://deb.debian.org/debian unstable/main arm64 libboost-thread-dev arm64 1.83.0.2+b2 [3616 B] Get: 305 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 306 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 307 http://deb.debian.org/debian unstable/main arm64 libpng-dev arm64 1.6.45-1 [361 kB] Get: 308 http://deb.debian.org/debian unstable/main arm64 libfreetype-dev arm64 2.13.3+dfsg-1 [600 kB] Get: 309 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 310 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 311 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 312 http://deb.debian.org/debian unstable/main arm64 libfontconfig-dev arm64 2.15.0-2 [412 kB] Get: 313 http://deb.debian.org/debian unstable/main arm64 libffi-dev arm64 3.4.6-1 [57.0 kB] Get: 314 http://deb.debian.org/debian unstable/main arm64 libsepol-dev arm64 3.7-1 [354 kB] Get: 315 http://deb.debian.org/debian unstable/main arm64 libpcre2-16-0 arm64 10.44-5 [230 kB] Get: 316 http://deb.debian.org/debian unstable/main arm64 libpcre2-32-0 arm64 10.44-5 [220 kB] Get: 317 http://deb.debian.org/debian unstable/main arm64 libpcre2-posix3 arm64 10.44-5 [60.5 kB] Get: 318 http://deb.debian.org/debian unstable/main arm64 libpcre2-dev arm64 10.44-5 [704 kB] Get: 319 http://deb.debian.org/debian unstable/main arm64 libselinux1-dev arm64 3.7-3+b1 [164 kB] Get: 320 http://deb.debian.org/debian unstable/main arm64 libmount-dev arm64 2.40.4-1 [29.3 kB] Get: 321 http://deb.debian.org/debian unstable/main arm64 libsysprof-capture-4-dev arm64 47.2-1 [49.1 kB] Get: 322 http://deb.debian.org/debian unstable/main arm64 libgio-2.0-dev arm64 2.82.4-2 [1698 kB] Get: 323 http://deb.debian.org/debian unstable/main arm64 libglib2.0-data all 2.82.4-2 [1276 kB] Get: 324 http://deb.debian.org/debian unstable/main arm64 libglib2.0-bin arm64 2.82.4-2 [123 kB] Get: 325 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 326 http://deb.debian.org/debian unstable/main arm64 libgio-2.0-dev-bin arm64 2.82.4-2 [162 kB] Get: 327 http://deb.debian.org/debian unstable/main arm64 libglib2.0-dev-bin arm64 2.82.4-2 [52.1 kB] Get: 328 http://deb.debian.org/debian unstable/main arm64 libglib2.0-dev arm64 2.82.4-2 [52.9 kB] Get: 329 http://deb.debian.org/debian unstable/main arm64 libpixman-1-dev arm64 0.44.0-3 [11.4 kB] Get: 330 http://deb.debian.org/debian unstable/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 331 http://deb.debian.org/debian unstable/main arm64 x11proto-dev all 2024.1-1 [603 kB] Get: 332 http://deb.debian.org/debian unstable/main arm64 x11proto-core-dev all 2024.1-1 [3312 B] Get: 333 http://deb.debian.org/debian unstable/main arm64 libice-dev arm64 2:1.1.1-1 [73.0 kB] Get: 334 http://deb.debian.org/debian unstable/main arm64 libsm-dev arm64 2:1.2.4-1 [38.0 kB] Get: 335 http://deb.debian.org/debian unstable/main arm64 libxau-dev arm64 1:1.0.11-1 [23.9 kB] Get: 336 http://deb.debian.org/debian unstable/main arm64 libxdmcp-dev arm64 1:1.1.5-1 [44.2 kB] Get: 337 http://deb.debian.org/debian unstable/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 338 http://deb.debian.org/debian unstable/main arm64 libxcb1-dev arm64 1.17.0-2+b1 [182 kB] Get: 339 http://deb.debian.org/debian unstable/main arm64 libx11-dev arm64 2:1.8.10-2 [877 kB] Get: 340 http://deb.debian.org/debian unstable/main arm64 libxcb-render0-dev arm64 1.17.0-2+b1 [119 kB] Get: 341 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0-dev arm64 1.17.0-2+b1 [108 kB] Get: 342 http://deb.debian.org/debian unstable/main arm64 libxext-dev arm64 2:1.3.4-1+b3 [105 kB] Get: 343 http://deb.debian.org/debian unstable/main arm64 libxrender-dev arm64 1:0.9.10-1.1+b3 [35.7 kB] Get: 344 http://deb.debian.org/debian unstable/main arm64 libcairo2-dev arm64 1.18.2-2 [43.0 kB] Get: 345 http://deb.debian.org/debian unstable/main arm64 libsigc++-3.0-0 arm64 3.6.0-2+b1 [29.2 kB] Get: 346 http://deb.debian.org/debian unstable/main arm64 libcairomm-1.16-1 arm64 1.18.0-1+b2 [57.6 kB] Get: 347 http://deb.debian.org/debian unstable/main arm64 libsigc++-3.0-dev arm64 3.6.0-2+b1 [51.5 kB] Get: 348 http://deb.debian.org/debian unstable/main arm64 libcairomm-1.16-dev arm64 1.18.0-1+b2 [64.4 kB] Get: 349 http://deb.debian.org/debian unstable/main arm64 libccp4-data all 8.0.0-4 [62.7 kB] Get: 350 http://deb.debian.org/debian unstable/main arm64 libccp4c0t64 arm64 8.0.0-4 [83.1 kB] Get: 351 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-14 [361 kB] Get: 352 http://deb.debian.org/debian unstable/main arm64 libmmdb2-0 arm64 2.0.22-1+b2 [309 kB] Get: 353 http://deb.debian.org/debian unstable/main arm64 libccp4f0t64 arm64 8.0.0-4 [175 kB] Get: 354 http://deb.debian.org/debian unstable/main arm64 libccp4-dev arm64 8.0.0-4 [42.9 kB] Get: 355 http://deb.debian.org/debian unstable/main arm64 sfftw2 arm64 2.1.5-7+b1 [203 kB] Get: 356 http://deb.debian.org/debian unstable/main arm64 libclipper2 arm64 2.1.20201109-2+b3 [1102 kB] Get: 357 http://deb.debian.org/debian unstable/main arm64 libmmdb2-dev arm64 2.0.22-1+b2 [92.9 kB] Get: 358 http://deb.debian.org/debian unstable/main arm64 sfftw-dev arm64 2.1.5-7+b1 [244 kB] Get: 359 http://deb.debian.org/debian unstable/main arm64 libclipper-dev arm64 2.1.20201109-2+b3 [82.4 kB] Get: 360 http://deb.debian.org/debian unstable/main arm64 libcoordgen3 arm64 3.0.2-1+b2 [204 kB] Get: 361 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 362 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 363 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 364 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.11.1-1+b1 [331 kB] Get: 365 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 366 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB] Get: 367 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 368 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 369 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 370 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 371 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 372 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 373 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 374 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 375 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 376 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-4 [15.9 kB] Get: 377 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.9+dfsg-1 [305 kB] Get: 378 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 379 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.6.0-2 [86.5 kB] Get: 380 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.9.1-1 [23.0 kB] Get: 381 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.9.1-1 [162 kB] Get: 382 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 383 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 384 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.4.0-2 [3234 kB] Get: 385 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 386 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [329 kB] Get: 387 http://deb.debian.org/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.11.1-1+b1 [461 kB] Get: 388 http://deb.debian.org/debian unstable/main arm64 libdatrie-dev arm64 0.2.13-3+b1 [18.5 kB] Get: 389 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-1+b1 [51.4 kB] Get: 390 http://deb.debian.org/debian unstable/main arm64 libdrm-radeon1 arm64 2.4.123-1 [21.3 kB] Get: 391 http://deb.debian.org/debian unstable/main arm64 libelf-dev arm64 0.192-4 [94.9 kB] Get: 392 http://deb.debian.org/debian unstable/main arm64 libdw1t64 arm64 0.192-4 [237 kB] Get: 393 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 394 http://deb.debian.org/debian unstable/main arm64 libdw-dev arm64 0.192-4 [320 kB] Get: 395 http://deb.debian.org/debian unstable/main arm64 libwayland-server0 arm64 1.23.0-1+b1 [33.4 kB] Get: 396 http://deb.debian.org/debian unstable/main arm64 libglapi-mesa arm64 24.3.3-1 [47.9 kB] Get: 397 http://deb.debian.org/debian unstable/main arm64 libllvm19 arm64 1:19.1.7-1 [23.3 MB] Get: 398 http://deb.debian.org/debian unstable/main arm64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 399 http://deb.debian.org/debian unstable/main arm64 libsensors5 arm64 1:3.6.0-10+b1 [34.3 kB] Get: 400 http://deb.debian.org/debian unstable/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [241 kB] Get: 401 http://deb.debian.org/debian unstable/main arm64 libxcb-dri3-0 arm64 1.17.0-2+b1 [107 kB] Get: 402 http://deb.debian.org/debian unstable/main arm64 libxcb-present0 arm64 1.17.0-2+b1 [106 kB] Get: 403 http://deb.debian.org/debian unstable/main arm64 libxcb-randr0 arm64 1.17.0-2+b1 [117 kB] Get: 404 http://deb.debian.org/debian unstable/main arm64 libxcb-sync1 arm64 1.17.0-2+b1 [109 kB] Get: 405 http://deb.debian.org/debian unstable/main arm64 libxcb-xfixes0 arm64 1.17.0-2+b1 [110 kB] Get: 406 http://deb.debian.org/debian unstable/main arm64 libxshmfence1 arm64 1.3-1+b3 [9104 B] Get: 407 http://deb.debian.org/debian unstable/main arm64 mesa-libgallium arm64 24.3.3-1 [7904 kB] Get: 408 http://deb.debian.org/debian unstable/main arm64 libgbm1 arm64 24.3.3-1 [42.9 kB] Get: 409 http://deb.debian.org/debian unstable/main arm64 libegl-mesa0 arm64 24.3.3-1 [119 kB] Get: 410 http://deb.debian.org/debian unstable/main arm64 libegl1 arm64 1.7.0-1+b2 [34.0 kB] Get: 411 http://deb.debian.org/debian unstable/main arm64 libxcb-glx0 arm64 1.17.0-2+b1 [123 kB] Get: 412 http://deb.debian.org/debian unstable/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b4 [19.2 kB] Get: 413 http://deb.debian.org/debian unstable/main arm64 libgl1-mesa-dri arm64 24.3.3-1 [44.6 kB] Get: 414 http://deb.debian.org/debian unstable/main arm64 libglx-mesa0 arm64 24.3.3-1 [142 kB] Get: 415 http://deb.debian.org/debian unstable/main arm64 libglx0 arm64 1.7.0-1+b2 [31.1 kB] Get: 416 http://deb.debian.org/debian unstable/main arm64 libgl1 arm64 1.7.0-1+b2 [90.9 kB] Get: 417 http://deb.debian.org/debian unstable/main arm64 libglx-dev arm64 1.7.0-1+b2 [15.8 kB] Get: 418 http://deb.debian.org/debian unstable/main arm64 libgl-dev arm64 1.7.0-1+b2 [101 kB] Get: 419 http://deb.debian.org/debian unstable/main arm64 libegl-dev arm64 1.7.0-1+b2 [19.5 kB] Get: 420 http://deb.debian.org/debian unstable/main arm64 libglvnd-core-dev arm64 1.7.0-1+b2 [13.4 kB] Get: 421 http://deb.debian.org/debian unstable/main arm64 libgles1 arm64 1.7.0-1+b2 [12.6 kB] Get: 422 http://deb.debian.org/debian unstable/main arm64 libgles-dev arm64 1.7.0-1+b2 [50.8 kB] Get: 423 http://deb.debian.org/debian unstable/main arm64 libopengl0 arm64 1.7.0-1+b2 [32.1 kB] Get: 424 http://deb.debian.org/debian unstable/main arm64 libopengl-dev arm64 1.7.0-1+b2 [5376 B] Get: 425 http://deb.debian.org/debian unstable/main arm64 libglvnd-dev arm64 1.7.0-1+b2 [5144 B] Get: 426 http://deb.debian.org/debian unstable/main arm64 libegl1-mesa-dev arm64 24.3.3-1 [22.8 kB] Get: 427 http://deb.debian.org/debian unstable/main arm64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 428 http://deb.debian.org/debian unstable/main arm64 libepoxy-dev arm64 1.5.10-2 [127 kB] Get: 429 http://deb.debian.org/debian unstable/main arm64 libfribidi-dev arm64 1.0.16-1 [65.9 kB] Get: 430 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf2.0-bin arm64 2.42.12+dfsg-1+b1 [19.0 kB] Get: 431 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 432 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 433 http://deb.debian.org/debian unstable/main arm64 libjbig-dev arm64 2.1-6.1+b2 [30.5 kB] Get: 434 http://deb.debian.org/debian unstable/main arm64 libwebpdecoder3 arm64 1.5.0-0.1 [182 kB] Get: 435 http://deb.debian.org/debian unstable/main arm64 libsharpyuv-dev arm64 1.5.0-0.1 [118 kB] Get: 436 http://deb.debian.org/debian unstable/main arm64 libwebp-dev arm64 1.5.0-0.1 [406 kB] Get: 437 http://deb.debian.org/debian unstable/main arm64 libtiffxx6 arm64 4.5.1+git230720-5 [149 kB] Get: 438 http://deb.debian.org/debian unstable/main arm64 liblerc-dev arm64 4.0.0+ds-5 [164 kB] Get: 439 http://deb.debian.org/debian unstable/main arm64 libtiff-dev arm64 4.5.1+git230720-5 [451 kB] Get: 440 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf-2.0-dev arm64 2.42.12+dfsg-1+b1 [52.7 kB] Get: 441 http://deb.debian.org/debian unstable/main arm64 libglibmm-2.68-1t64 arm64 2.82.0-1 [604 kB] Get: 442 http://deb.debian.org/debian unstable/main arm64 libglibmm-2.68-dev arm64 2.82.0-1 [465 kB] Get: 443 http://deb.debian.org/debian unstable/main arm64 libglm-dev all 0.9.9.8+ds-8 [183 kB] Get: 444 http://deb.debian.org/debian unstable/main arm64 libgraphene-1.0-dev arm64 1.10.8-5 [61.5 kB] Get: 445 http://deb.debian.org/debian unstable/main arm64 libgraphite2-dev arm64 1.3.14-2+b1 [20.3 kB] Get: 446 http://deb.debian.org/debian unstable/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB] Get: 447 http://deb.debian.org/debian unstable/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB] Get: 448 http://deb.debian.org/debian unstable/main arm64 libgsl-dev arm64 2.8+dfsg-5 [1118 kB] Get: 449 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-icu0 arm64 10.2.0-1 [15.5 kB] Get: 450 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-cairo0 arm64 10.2.0-1 [42.4 kB] Get: 451 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-dev arm64 10.2.0-1 [145 kB] Get: 452 http://deb.debian.org/debian unstable/main arm64 libthai-dev arm64 0.1.29-2+b1 [24.0 kB] Get: 453 http://deb.debian.org/debian unstable/main arm64 libxft-dev arm64 2.3.6-1+b3 [72.0 kB] Get: 454 http://deb.debian.org/debian unstable/main arm64 pango1.0-tools arm64 1.56.1-1 [43.0 kB] Get: 455 http://deb.debian.org/debian unstable/main arm64 libpango1.0-dev arm64 1.56.1-1 [155 kB] Get: 456 http://deb.debian.org/debian unstable/main arm64 libwayland-cursor0 arm64 1.23.0-1+b1 [11.5 kB] Get: 457 http://deb.debian.org/debian unstable/main arm64 libwayland-bin arm64 1.23.0-1+b1 [20.5 kB] Get: 458 http://deb.debian.org/debian unstable/main arm64 libwayland-dev arm64 1.23.0-1+b1 [73.6 kB] Get: 459 http://deb.debian.org/debian unstable/main arm64 libxcomposite1 arm64 1:0.4.6-1 [16.4 kB] Get: 460 http://deb.debian.org/debian unstable/main arm64 libxfixes-dev arm64 1:6.0.0-2+b3 [22.9 kB] Get: 461 http://deb.debian.org/debian unstable/main arm64 libxcomposite-dev arm64 1:0.4.6-1 [20.2 kB] Get: 462 http://deb.debian.org/debian unstable/main arm64 libxcursor-dev arm64 1:1.2.3-1 [51.9 kB] Get: 463 http://deb.debian.org/debian unstable/main arm64 libxdamage-dev arm64 1:1.1.6-1+b2 [15.5 kB] Get: 464 http://deb.debian.org/debian unstable/main arm64 libxi-dev arm64 2:1.8.2-1 [240 kB] Get: 465 http://deb.debian.org/debian unstable/main arm64 libxinerama-dev arm64 2:1.1.4-3+b3 [18.4 kB] Get: 466 http://deb.debian.org/debian unstable/main arm64 libxkbcommon-dev arm64 1.7.0-2 [53.6 kB] Get: 467 http://deb.debian.org/debian unstable/main arm64 libxrandr-dev arm64 2:1.5.4-1+b2 [44.4 kB] Get: 468 http://deb.debian.org/debian unstable/main arm64 libvulkan-dev arm64 1.4.304.0-1 [1452 kB] Get: 469 http://deb.debian.org/debian unstable/main arm64 wayland-protocols all 1.39-1 [107 kB] Get: 470 http://deb.debian.org/debian unstable/main arm64 libgtk-4-dev arm64 4.16.12+ds-1 [986 kB] Get: 471 http://deb.debian.org/debian unstable/main arm64 libpangomm-2.48-1t64 arm64 2.56.1-1 [81.0 kB] Get: 472 http://deb.debian.org/debian unstable/main arm64 libgtkmm-4.0-0 arm64 4.16.0-1 [965 kB] Get: 473 http://deb.debian.org/debian unstable/main arm64 libpangomm-2.48-dev arm64 2.56.1-1 [73.2 kB] Get: 474 http://deb.debian.org/debian unstable/main arm64 libgtkmm-4.0-dev arm64 4.16.0-1 [547 kB] Get: 475 http://deb.debian.org/debian unstable/main arm64 libinchi1.07 arm64 1.07.2+dfsg-1 [500 kB] Get: 476 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 477 http://deb.debian.org/debian unstable/main arm64 libmaeparser1 arm64 1.3.1-1+b2 [84.6 kB] Get: 478 http://deb.debian.org/debian unstable/main arm64 libogg0 arm64 1.3.5-3+b2 [23.6 kB] Get: 479 http://deb.debian.org/debian unstable/main arm64 libogg-dev arm64 1.3.5-3+b2 [200 kB] Get: 480 http://deb.debian.org/debian unstable/main arm64 librdkit1t64 arm64 202409.4-1 [4811 kB] Get: 481 http://deb.debian.org/debian unstable/main arm64 librdkit-dev arm64 202409.4-1 [471 kB] Get: 482 http://deb.debian.org/debian unstable/main arm64 libsqlite3-dev arm64 3.46.1-1 [1058 kB] Get: 483 http://deb.debian.org/debian unstable/main arm64 libssm2 arm64 1.4.0-2+b3 [75.3 kB] Get: 484 http://deb.debian.org/debian unstable/main arm64 libssm-dev arm64 1.4.0-2+b3 [15.2 kB] Get: 485 http://deb.debian.org/debian unstable/main arm64 libvorbis0a arm64 1.3.7-2+b1 [84.5 kB] Get: 486 http://deb.debian.org/debian unstable/main arm64 libvorbisenc2 arm64 1.3.7-2+b1 [76.3 kB] Get: 487 http://deb.debian.org/debian unstable/main arm64 libvorbisfile3 arm64 1.3.7-2+b1 [20.8 kB] Get: 488 http://deb.debian.org/debian unstable/main arm64 libvorbis-dev arm64 1.3.7-2+b1 [320 kB] Get: 489 http://deb.debian.org/debian unstable/main arm64 robin-map-dev all 1.3.0-1 [29.8 kB] Get: 490 http://deb.debian.org/debian unstable/main arm64 nanobind-dev all 2.4.0-1 [161 kB] Get: 491 http://deb.debian.org/debian unstable/main arm64 python3-gi arm64 3.50.0-4 [257 kB] Get: 492 http://deb.debian.org/debian unstable/main arm64 python-gi-dev arm64 3.50.0-4 [13.5 kB] Get: 493 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.12.14+ds-1 [9624 B] Get: 494 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 495 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1+b1 [129 kB] Get: 496 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 497 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-13 [3815 kB] Get: 498 http://deb.debian.org/debian unstable/main arm64 rdkit-data all 202409.4-1 [13.2 MB] Get: 499 http://deb.debian.org/debian unstable/main arm64 python3-rdkit arm64 202409.4-1 [4314 kB] Get: 500 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 501 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 502 http://deb.debian.org/debian unstable/main arm64 sharutils arm64 1:4.15.2-10 [260 kB] Get: 503 http://deb.debian.org/debian unstable/main arm64 swig arm64 4.3.0-0.1 [1406 kB] Fetched 298 MB in 3s (96.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libsystemd-shared_257.2-2_arm64.deb ... Unpacking libsystemd-shared:arm64 (257.2-2) ... Selecting previously unselected package libapparmor1:arm64. Preparing to unpack .../libapparmor1_3.1.7-1+b3_arm64.deb ... Unpacking libapparmor1:arm64 (3.1.7-1+b3) ... Setting up libsystemd-shared:arm64 (257.2-2) ... Selecting previously unselected package systemd. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19978 files and directories currently installed.) Preparing to unpack .../systemd_257.2-2_arm64.deb ... Unpacking systemd (257.2-2) ... Setting up libapparmor1:arm64 (3.1.7-1+b3) ... Setting up systemd (257.2-2) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' -> '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' -> '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' -> '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20921 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_257.2-2_arm64.deb ... Unpacking systemd-sysv (257.2-2) ... Selecting previously unselected package libdbus-1-3:arm64. Preparing to unpack .../01-libdbus-1-3_1.16.0-1_arm64.deb ... Unpacking libdbus-1-3:arm64 (1.16.0-1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../02-dbus-bin_1.16.0-1_arm64.deb ... Unpacking dbus-bin (1.16.0-1) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../03-dbus-session-bus-common_1.16.0-1_all.deb ... Unpacking dbus-session-bus-common (1.16.0-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../04-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../05-dbus-daemon_1.16.0-1_arm64.deb ... Unpacking dbus-daemon (1.16.0-1) ... Selecting previously unselected package dbus-system-bus-common. Preparing to unpack .../06-dbus-system-bus-common_1.16.0-1_all.deb ... Unpacking dbus-system-bus-common (1.16.0-1) ... Selecting previously unselected package dbus. Preparing to unpack .../07-dbus_1.16.0-1_arm64.deb ... Unpacking dbus (1.16.0-1) ... Selecting previously unselected package libfftw3-double3:arm64. Preparing to unpack .../08-libfftw3-double3_3.3.10-2+b1_arm64.deb ... Unpacking libfftw3-double3:arm64 (3.3.10-2+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../09-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../10-libpng16-16t64_1.6.45-1_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.45-1) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../11-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-freefont-ttf. Preparing to unpack .../12-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... Selecting previously unselected package libfontenc1:arm64. Preparing to unpack .../13-libfontenc1_1%3a1.1.8-1+b2_arm64.deb ... Unpacking libfontenc1:arm64 (1:1.1.8-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../14-x11-common_1%3a7.7+23.2_all.deb ... Unpacking x11-common (1:7.7+23.2) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../15-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../16-xfonts-utils_1%3a7.7+7_arm64.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../17-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../18-fontconfig-config_2.15.0-2_arm64.deb ... Unpacking fontconfig-config (2.15.0-2) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../19-libfontconfig1_2.15.0-2_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-2) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../20-libsharpyuv0_1.5.0-0.1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... Selecting previously unselected package libdav1d7:arm64. Preparing to unpack .../21-libdav1d7_1.5.0-1+b1_arm64.deb ... Unpacking libdav1d7:arm64 (1.5.0-1+b1) ... Selecting previously unselected package libheif-plugin-dav1d:arm64. Preparing to unpack .../22-libheif-plugin-dav1d_1.19.5-1+b1_arm64.deb ... Unpacking libheif-plugin-dav1d:arm64 (1.19.5-1+b1) ... Selecting previously unselected package libde265-0:arm64. Preparing to unpack .../23-libde265-0_1.0.15-1+b2_arm64.deb ... Unpacking libde265-0:arm64 (1.0.15-1+b2) ... Selecting previously unselected package libheif-plugin-libde265:arm64. Preparing to unpack .../24-libheif-plugin-libde265_1.19.5-1+b1_arm64.deb ... Unpacking libheif-plugin-libde265:arm64 (1.19.5-1+b1) ... Selecting previously unselected package libheif1:arm64. Preparing to unpack .../25-libheif1_1.19.5-1+b1_arm64.deb ... Unpacking libheif1:arm64 (1.19.5-1+b1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../26-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../27-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../28-liblcms2-2_2.16-2_arm64.deb ... Unpacking liblcms2-2:arm64 (2.16-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../29-libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../30-libglib2.0-0t64_2.82.4-2_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.82.4-2) ... Selecting previously unselected package liblqr-1-0:arm64. Preparing to unpack .../31-liblqr-1-0_0.4.2-2.1+b2_arm64.deb ... Unpacking liblqr-1-0:arm64 (0.4.2-2.1+b2) ... Selecting previously unselected package libltdl7:arm64. Preparing to unpack .../32-libltdl7_2.5.4-2_arm64.deb ... Unpacking libltdl7:arm64 (2.5.4-2) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../33-libopenjp2-7_2.5.0-2+b4_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.0-2+b4) ... Selecting previously unselected package libraw23t64:arm64. Preparing to unpack .../34-libraw23t64_0.21.3-1+b1_arm64.deb ... Unpacking libraw23t64:arm64 (0.21.3-1+b1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../35-libdeflate0_1.23-1+b1_arm64.deb ... Unpacking libdeflate0:arm64 (1.23-1+b1) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../36-liblerc4_4.0.0+ds-5_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-5) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../37-libwebp7_1.5.0-0.1_arm64.deb ... Unpacking libwebp7:arm64 (1.5.0-0.1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../38-libtiff6_4.5.1+git230720-5_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-5) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../39-libwebpdemux2_1.5.0-0.1_arm64.deb ... Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../40-libwebpmux3_1.5.0-0.1_arm64.deb ... Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../41-libxau6_1%3a1.0.11-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../42-libxdmcp6_1%3a1.1.5-1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../43-libxcb1_1.17.0-2+b1_arm64.deb ... Unpacking libxcb1:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../44-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../45-libx11-6_2%3a1.8.10-2_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.10-2) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../46-libxext6_2%3a1.3.4-1+b3_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b3) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../47-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../48-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package imagemagick-7-common. Preparing to unpack .../49-imagemagick-7-common_8%3a7.1.1.43+dfsg1-1_all.deb ... Unpacking imagemagick-7-common (8:7.1.1.43+dfsg1-1) ... Selecting previously unselected package libmagickcore-7.q16-10:arm64. Preparing to unpack .../50-libmagickcore-7.q16-10_8%3a7.1.1.43+dfsg1-1_arm64.deb ... Unpacking libmagickcore-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... Selecting previously unselected package libmagickwand-7.q16-10:arm64. Preparing to unpack .../51-libmagickwand-7.q16-10_8%3a7.1.1.43+dfsg1-1_arm64.deb ... Unpacking libmagickwand-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../52-poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../53-libpython3.13-minimal_3.13.1-3_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.1-3) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../54-python3.13-minimal_3.13.1-3_arm64.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Setting up libpython3.13-minimal:arm64 (3.13.1-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.1-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23129 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_arm64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-1_all.deb ... Unpacking tzdata (2025a-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../5-libreadline8t64_8.2-6_arm64.deb ... 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Setting up systemd-sysv (257.2-2) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libboost1.83-dev:arm64 (1.83.0-4) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up swig (4.3.0-0.1) ... Setting up libpixman-1-dev:arm64 (0.44.0-3) ... Setting up native-architecture (0.2.3) ... Setting up libicu72:arm64 (72.1-6) ... Setting up libxcb-xfixes0:arm64 (1.17.0-2+b1) ... Setting up libogg0:arm64 (1.3.5-3+b2) ... Setting up libzstd-dev:arm64 (1.5.6+dfsg-2) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libglvnd-core-dev:arm64 (1.7.0-1+b2) ... Setting up hicolor-icon-theme (0.18-1) ... Setting up libboost-date-time1.83.0:arm64 (1.83.0-4) ... Setting up libdatrie1:arm64 (0.2.13-3+b1) ... Setting up libgslcblas0:arm64 (2.8+dfsg-5) ... Setting up libmmdb2-0:arm64 (2.0.22-1+b2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:arm64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up imagemagick-7-common (8:7.1.1.43+dfsg1-1) ... Setting up libglvnd0:arm64 (1.7.0-1+b2) ... Setting up libijs-0.35:arm64 (0.35-15.1+b2) ... Setting up libboost-regex1.83.0:arm64 (1.83.0-4) ... Setting up libxcb-glx0:arm64 (1.17.0-2+b1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libgs-common (10.04.0~dfsg-2) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libedit2:arm64 (3.1-20250104-1) ... Setting up libboost-system1.83.0:arm64 (1.83.0-4) ... Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... Setting up libuv1t64:arm64 (1.48.0-7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.2) ... Running in chroot, ignoring request. Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-10) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libibumad3:arm64 (55.0-1) ... Setting up libdeflate0:arm64 (1.23-1+b1) ... Setting up fonts-freefont-ttf (20211204+svn4273-2) ... Setting up libwebpdecoder3:arm64 (1.5.0-0.1) ... Setting up libboost-thread1.83.0:arm64 (1.83.0-4) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up xkb-data (2.42-1) ... Setting up liblzo2-2:arm64 (2.10-3+b1) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up libibmad5:arm64 (55.0-1) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libccp4-data (8.0.0-4) ... Setting up libogg-dev:arm64 (1.3.5-3+b2) ... Setting up rdkit-data (202409.4-1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libpcre2-16-0:arm64 (10.44-5) ... Setting up libopengl0:arm64 (1.7.0-1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up poppler-data (0.4.12-1) ... Setting up libkrb5support0:arm64 (1.21.3-4) ... Setting up libdw1t64:arm64 (0.192-4) ... Setting up libmaeparser1:arm64 (1.3.1-1+b2) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jan 22 18:35:48 UTC 2025. Universal Time is now: Wed Jan 22 18:35:48 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:arm64 (1.83.0-4) ... Setting up libxcb-present0:arm64 (1.17.0-2+b1) ... Setting up libsysprof-capture-4-dev:arm64 (47.2-1) ... Setting up libasound2-data (1.2.13-1) ... Setting up libboost-serialization1.83.0:arm64 (1.83.0-4) ... Setting up xtrans-dev (1.4.0-1) ... Setting up libboost-numpy1.83.0 (1.83.0-4) ... Setting up libgraphite2-dev:arm64 (1.3.14-2+b1) ... Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:arm64 (4.13.3-1) ... Setting up libpcre2-32-0:arm64 (10.44-5) ... Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libglib2.0-data (2.82.4-2) ... Setting up libunbound8:arm64 (1.22.0-1+b1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3) ... Setting up libgles2:arm64 (1.7.0-1+b2) ... Setting up libasound2t64:arm64 (1.2.13-1+b1) ... Setting up libmunge2:arm64 (0.5.15-4+b1) ... Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libsqlite3-dev:arm64 (3.46.1-1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3+b1) ... Setting up libepoxy0:arm64 (1.5.10-2) ... Setting up libboost-chrono1.83.0t64:arm64 (1.83.0-4) ... Setting up libxcb-sync1:arm64 (1.17.0-2+b1) ... Setting up libjbig2dec0:arm64 (0.20-1+b3) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up uuid-dev:arm64 (2.40.4-1) ... Setting up libavahi-common-data:arm64 (0.8-16) ... Setting up libgles1:arm64 (1.7.0-1+b2) ... Setting up libdbus-1-3:arm64 (1.16.0-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:arm64 (1.0.16-1) ... Setting up libproc2-0:arm64 (2:4.0.4-6) ... Setting up comerr-dev:arm64 (2.1-1.47.2-1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up libssl-dev:arm64 (3.4.0-2) ... Setting up libpng16-16t64:arm64 (1.6.45-1) ... Setting up libhwloc15:arm64 (2.11.2-1) ... Setting up libvorbis0a:arm64 (1.3.7-2+b1) ... Setting up libidn12:arm64 (1.42-2+b1) ... Setting up libmmdb2-dev (2.0.22-1+b2) ... Setting up autopoint (0.23.1-1) ... Setting up icu-devtools (72.1-6) ... Setting up libsepol-dev:arm64 (3.7-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libsensors5:arm64 (1:3.6.0-10+b1) ... Setting up liblerc-dev:arm64 (4.0.0+ds-5) ... Setting up libk5crypto3:arm64 (1.21.3-4) ... Setting up libltdl7:arm64 (2.5.4-2) ... Setting up libfftw3-double3:arm64 (3.3.10-2+b1) ... Setting up libglapi-mesa:arm64 (24.3.3-1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:arm64 (14.2.0-14) ... Setting up libraw23t64:arm64 (0.21.3-1+b1) ... Setting up libvulkan1:arm64 (1.4.304.0-1) ... Setting up libboost-atomic1.83-dev:arm64 (1.83.0-4) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.6.0-2) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libnghttp3-dev:arm64 (1.6.0-2) ... Setting up liblzma-dev:arm64 (5.6.3-1+b1) ... Setting up libsigc++-3.0-0:arm64 (3.6.0-2+b1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up robin-map-dev (1.3.0-1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up libnuma1:arm64 (2.0.18-1+b1) ... Setting up libpcre2-posix3:arm64 (10.44-5) ... Setting up dwz (0.15-1+b1) ... Setting up wayland-protocols (1.39-1) ... Setting up libdav1d7:arm64 (1.5.0-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ocl-icd-libopencl1:arm64 (2.3.2-1+b2) ... Setting up libxshmfence1:arm64 (1.3-1+b3) ... Setting up libccp4c0t64:arm64 (8.0.0-4) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libxcb-randr0:arm64 (1.17.0-2+b1) ... Setting up dbus-session-bus-common (1.16.0-1) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libnl-3-200:arm64 (3.7.0-0.3+b1) ... Setting up libtasn1-6:arm64 (4.19.0-3+b3) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up libthai-data (0.1.29-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:arm64 (1.9.1-1) ... Setting up cmake-data (3.31.4-2) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-4) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libwayland-egl1:arm64 (1.23.0-1+b1) ... Setting up libboost-system1.83-dev:arm64 (1.83.0-4) ... Setting up libpaper2:arm64 (2.2.5-0.3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libopengl-dev:arm64 (1.7.0-1+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libcoordgen3:arm64 (3.0.2-1+b2) ... Setting up gemmi (0.6.5+ds-2+b2) ... Setting up sharutils (1:4.15.2-10) ... Setting up dbus-system-bus-common (1.16.0-1) ... useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Setting up libasound2-dev:arm64 (1.2.13-1+b1) ... Setting up libgsl28:arm64 (2.8+dfsg-5) ... Setting up libde265-0:arm64 (1.0.15-1+b2) ... Setting up libsharpyuv-dev:arm64 (1.5.0-0.1) ... Setting up libtasn1-6-dev:arm64 (4.19.0-3+b3) ... Setting up openssl (3.4.0-2) ... Setting up libwebpmux3:arm64 (1.5.0-0.1) ... Setting up libtiffxx6:arm64 (4.5.1+git230720-5) ... Setting up libinchi1.07 (1.07.2+dfsg-1) ... Setting up libdeflate-dev:arm64 (1.23-1+b1) ... Setting up libdrm-common (2.4.123-1) ... Setting up libxcomposite1:arm64 (1:0.4.6-1) ... Setting up readline-common (8.2-6) ... Setting up libicu-dev:arm64 (72.1-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up dbus-bin (1.16.0-1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b6) ... Setting up libblas-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up tao-pegtl-dev (3.2.7-1) ... Setting up libvorbisenc2:arm64 (1.3.7-2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up libxkbcommon0:arm64 (1.7.0-2) ... Setting up libwayland-client0:arm64 (1.23.0-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up libxcb-dri3-0:arm64 (1.17.0-2+b1) ... Setting up libblkid-dev:arm64 (2.40.4-1) ... Setting up libllvm19:arm64 (1:19.1.7-1) ... Setting up libwayland-server0:arm64 (1.23.0-1+b1) ... Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libgsl-dev (2.8+dfsg-5) ... Setting up libxdamage1:arm64 (1:1.1.6-1+b2) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-3) ... Setting up libssm2:arm64 (1.4.0-2+b3) ... Setting up libxau-dev:arm64 (1:1.0.11-1) ... Setting up libboost-chrono1.83-dev:arm64 (1.83.0-4) ... Setting up libpcre2-dev:arm64 (10.44-5) ... Setting up nettle-dev:arm64 (3.10-1+b1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b3) ... Setting up libice-dev:arm64 (2:1.1.1-1) ... Setting up libtool (2.5.4-2) ... Setting up libselinux1-dev:arm64 (3.7-3+b1) ... Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libfribidi-dev:arm64 (1.0.16-1) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libxkbcommon-dev:arm64 (1.7.0-2) ... Setting up gemmi-dev (0.6.5+ds-2+b2) ... Setting up libboost-system-dev:arm64 (1.83.0.2+b2) ... Setting up libpng-dev:arm64 (1.6.45-1) ... Setting up libavahi-common3:arm64 (0.8-16) ... Setting up libboost-serialization1.83-dev:arm64 (1.83.0-4) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libjbig-dev:arm64 (2.1-6.1+b2) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up dbus-daemon (1.16.0-1) ... Setting up libngtcp2-dev:arm64 (1.9.1-1) ... Setting up libffi-dev:arm64 (3.4.6-1) ... Setting up libccp4f0t64:arm64 (8.0.0-4) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:arm64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:arm64 (535.171.04-1+b1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libvorbisfile3:arm64 (1.3.7-2+b1) ... Setting up libsigc++-3.0-dev:arm64 (3.6.0-2+b1) ... Setting up libxdmcp-dev:arm64 (1:1.1.5-1) ... Setting up libwayland-bin (1.23.0-1+b1) ... Setting up libglib2.0-0t64:arm64 (2.82.4-2) ... Setting up libwebp-dev:arm64 (1.5.0-0.1) ... Setting up libllvm17t64:arm64 (1:17.0.6-20+b1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libtiff-dev:arm64 (4.5.1+git230720-5) ... Setting up libxfixes3:arm64 (1:6.0.0-2+b3) ... Setting up libboost-date-time1.83-dev:arm64 (1.83.0-4) ... Setting up x11proto-core-dev (2024.1-1) ... Setting up libldap-dev:arm64 (2.6.9+dfsg-1) ... Setting up dbus (1.16.0-1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-5+b1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libxinerama1:arm64 (2:1.1.4-3+b3) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up libxrandr2:arm64 (2:1.5.4-1+b2) ... Setting up libelf-dev:arm64 (0.192-4) ... Setting up libboost-regex1.83-dev:arm64 (1.83.0-4) ... Setting up gir1.2-glib-2.0:arm64 (2.82.4-2) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.7-2+b1) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up libssm-dev:arm64 (1.4.0-2+b3) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up libdrm2:arm64 (2.4.123-1) ... Setting up libdatrie-dev:arm64 (0.2.13-3+b1) ... Setting up liblqr-1-0:arm64 (0.4.2-2.1+b2) ... Setting up gir1.2-glib-2.0-dev:arm64 (2.82.4-2) ... Setting up groff-base (1.23.0-7) ... Setting up libwayland-cursor0:arm64 (1.23.0-1+b1) ... Setting up libpam-systemd:arm64 (257.2-2) ... Setting up libharfbuzz0b:arm64 (10.2.0-1) ... Setting up libgirepository-1.0-1:arm64 (1.82.0-4) ... Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.12+dfsg-1+b1) ... Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libfontconfig1:arm64 (2.15.0-2) ... Setting up libsm6:arm64 (2:1.2.4-1) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-3) ... Setting up libavahi-client3:arm64 (0.8-16) ... Setting up libmount-dev:arm64 (2.40.4-1) ... Setting up libp11-kit-dev:arm64 (0.25.5-3) ... Setting up libgraphene-1.0-0:arm64 (1.10.8-5) ... Setting up libpython3-stdlib:arm64 (3.13.1-2) ... Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ... Setting up libpython3.13:arm64 (3.13.1-3) ... Setting up libgnutls30t64:arm64 (3.8.8-2) ... Setting up gir1.2-graphene-1.0:arm64 (1.10.8-5) ... Setting up libboost-thread1.83-dev:arm64 (1.83.0-4) ... Setting up libvorbis-dev:arm64 (1.3.7-2+b1) ... Setting up libgnutls-openssl27t64:arm64 (3.8.8-2) ... Setting up gtk-update-icon-cache (4.16.12+ds-1) ... Setting up libnghttp2-dev:arm64 (1.64.0-1) ... Setting up libibverbs1:arm64 (55.0-1) ... Setting up fontconfig (2.15.0-2) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b3) ... Setting up libgio-2.0-dev:arm64 (2.82.4-2) ... Setting up libharfbuzz-icu0:arm64 (10.2.0-1) ... Setting up libxcb1-dev:arm64 (1.17.0-2+b1) ... Setting up libglibmm-2.68-1t64:arm64 (2.82.0-1) ... Setting up libxi6:arm64 (2:1.8.2-1) ... Setting up gir1.2-gdkpixbuf-2.0:arm64 (2.42.12+dfsg-1+b1) ... Setting up libccp4-dev:arm64 (8.0.0-4) ... Setting up ibverbs-providers:arm64 (55.0-1) ... Setting up python3.13 (3.13.1-3) ... Setting up libgirepository-2.0-0:arm64 (2.82.4-2) ... Setting up libsm-dev:arm64 (2:1.2.4-1) ... Setting up libdrm-radeon1:arm64 (2.4.123-1) ... Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxcursor1:arm64 (1:1.2.3-1) ... Setting up nanobind-dev (2.4.0-1) ... Setting up libpango-1.0-0:arm64 (1.56.1-1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libx11-dev:arm64 (2:1.8.10-2) ... Setting up libcloudproviders0:arm64 (0.3.6-1+b1) ... Setting up bc (1.07.1-4+b1) ... Setting up libglib2.0-bin (2.82.4-2) ... Setting up python3 (3.13.1-2) ... Setting up libharfbuzz-gobject0:arm64 (10.2.0-1) ... Setting up libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Setting up python3-zipp (3.21.0-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhwloc-plugins:arm64 (2.11.2-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' -> '/usr/lib/systemd/system/man-db.timer'. Setting up libwayland-dev:arm64 (1.23.0-1+b1) ... Setting up libdw-dev:arm64 (0.192-4) ... Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libcolord2:arm64 (1.4.7-1+b2) ... Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libfreetype-dev:arm64 (2.13.3+dfsg-1) ... Setting up libdconf1:arm64 (0.40.0-5) ... Setting up libcairomm-1.16-1:arm64 (1.18.0-1+b2) ... Setting up libxfixes-dev:arm64 (1:6.0.0-2+b3) ... Setting up libxcb-shm0-dev:arm64 (1.17.0-2+b1) ... Setting up dbus-user-session (1.16.0-1) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libgnutls-dane0t64:arm64 (3.8.8-2) ... Setting up libharfbuzz-cairo0:arm64 (10.2.0-1) ... Setting up adwaita-icon-theme (47.0-2) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up python3-certifi (2024.12.14+ds-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up gir1.2-girepository-2.0:arm64 (1.82.0-4) ... Setting up libgssrpc4t64:arm64 (1.21.3-4) ... Setting up libpython3.13-dev:arm64 (3.13.1-3) ... Setting up python3-gi (3.50.0-4) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b2) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up libxcb-render0-dev:arm64 (1.17.0-2+b1) ... Setting up libpmix2t64:arm64 (5.0.6-1) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up libxext-dev:arm64 (2:1.3.4-1+b3) ... Setting up libthai-dev:arm64 (0.1.29-2+b1) ... Setting up libgdk-pixbuf2.0-bin (2.42.12+dfsg-1+b1) ... Setting up libharfbuzz-subset0:arm64 (10.2.0-1) ... Setting up librdmacm1t64:arm64 (55.0-1) ... Setting up libcairo-gobject2:arm64 (1.18.2-2) ... Setting up libpangoft2-1.0-0:arm64 (1.56.1-1) ... Setting up libxi-dev:arm64 (2:1.8.2-1) ... Setting up libxrender-dev:arm64 (1:0.9.10-1.1+b3) ... Setting up libcups2t64:arm64 (2.4.10-2+b1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ... Setting up libhsakmt1:arm64 (6.1.2+ds-1) ... Setting up libboost-thread-dev:arm64 (1.83.0.2+b2) ... Setting up libpangocairo-1.0-0:arm64 (1.56.1-1) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-4) ... Setting up libxdamage-dev:arm64 (1:1.1.6-1+b2) ... Setting up libgnutls28-dev:arm64 (3.8.8-2) ... Setting up libcairo-script-interpreter2:arm64 (1.18.2-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up libfabric1:arm64 (1.17.0-3.1) ... Setting up mesa-libgallium:arm64 (24.3.3-1) ... Setting up libgio-2.0-dev-bin (2.82.4-2) ... Setting up libvulkan-dev:arm64 (1.4.304.0-1) ... Setting up gir1.2-freedesktop:arm64 (1.82.0-4) ... Setting up girepository-tools:arm64 (2.82.4-2) ... Setting up libpython3-dev:arm64 (3.13.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpangoxft-1.0-0:arm64 (1.56.1-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:arm64 (8.11.1-1+b1) ... Setting up librdkit1t64 (202409.4-1) ... Setting up libkdb5-10t64:arm64 (1.21.3-4) ... Setting up libgbm1:arm64 (24.3.3-1) ... Setting up libfontconfig-dev:arm64 (2.15.0-2) ... Setting up libxcomposite-dev:arm64 (1:0.4.6-1) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3.13-dev (3.13.1-3) ... Setting up libxcursor-dev:arm64 (1:1.2.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libgl1-mesa-dri:arm64 (24.3.3-1) ... Setting up pango1.0-tools (1.56.1-1) ... Setting up libcurl3t64-gnutls:arm64 (8.11.1-1+b1) ... Setting up debhelper (13.24.1) ... Setting up dconf-service (0.40.0-5) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.9.1-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up gir1.2-harfbuzz-0.0:arm64 (10.2.0-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up gir1.2-pango-1.0:arm64 (1.56.1-1) ... Setting up libxrandr-dev:arm64 (2:1.5.4-1+b2) ... Setting up libegl-mesa0:arm64 (24.3.3-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-rdkit (202409.4-1) ... Setting up python3-dev (3.13.1-2) ... Setting up gir1.2-freedesktop-dev:arm64 (1.82.0-4) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up libboost-python1.83-dev (1.83.0-4) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up librdkit-dev (202409.4-1) ... Setting up libxinerama-dev:arm64 (2:1.1.4-3+b3) ... Setting up libhsa-runtime64-1:arm64 (6.1.2-2) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-4) ... Setting up libegl1:arm64 (1.7.0-1+b2) ... Setting up cmake (3.31.4-2) ... Setting up libpangomm-2.48-1t64:arm64 (2.56.1-1) ... Setting up libxft-dev:arm64 (2.3.6-1+b3) ... Setting up krb5-multidev:arm64 (1.21.3-4) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up libgs10-common (10.04.0~dfsg-2) ... Setting up libglib2.0-dev-bin (2.82.4-2) ... Setting up libglx-mesa0:arm64 (24.3.3-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up libglx0:arm64 (1.7.0-1+b2) ... Setting up dconf-gsettings-backend:arm64 (0.40.0-5) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up libkrb5-dev:arm64 (1.21.3-4) ... Setting up libgl1:arm64 (1.7.0-1+b2) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up libglib2.0-dev:arm64 (2.82.4-2) ... Setting up libgraphene-1.0-dev:arm64 (1.10.8-5) ... Setting up libglx-dev:arm64 (1.7.0-1+b2) ... Setting up libcairo2-dev:arm64 (1.18.2-2) ... Setting up libglibmm-2.68-dev:arm64 (2.82.0-1) ... Setting up libgtk-4-common (4.16.12+ds-1) ... Setting up libcairomm-1.16-dev:arm64 (1.18.0-1+b2) ... Setting up libgl-dev:arm64 (1.7.0-1+b2) ... Setting up libgs10:arm64 (10.04.0~dfsg-2+b1) ... Setting up dh-python (6.20250108) ... Setting up libgdk-pixbuf-2.0-dev:arm64 (2.42.12+dfsg-1+b1) ... Setting up python-gi-dev (3.50.0-4) ... Setting up libucx0:arm64 (1.17.0+ds-3) ... Setting up libharfbuzz-dev:arm64 (10.2.0-1) ... Setting up libegl-dev:arm64 (1.7.0-1+b2) ... Setting up libepoxy-dev:arm64 (1.5.10-2) ... Setting up ghostscript (10.04.0~dfsg-2+b1) ... Setting up libcurl4-gnutls-dev:arm64 (8.11.1-1+b1) ... Setting up libpango1.0-dev:arm64 (1.56.1-1) ... Setting up libgtk-4-1:arm64 (4.16.12+ds-1) ... Setting up libpangomm-2.48-dev:arm64 (2.56.1-1) ... Setting up libgles-dev:arm64 (1.7.0-1+b2) ... Setting up gir1.2-gtk-4.0:arm64 (4.16.12+ds-1) ... Setting up libopenmpi40:arm64 (5.0.6-3) ... Setting up sfftw2 (2.1.5-7+b1) ... Setting up libglvnd-dev:arm64 (1.7.0-1+b2) ... Setting up fftw2 (2.1.5-7+b1) ... Setting up sfftw-dev (2.1.5-7+b1) ... Setting up libgtkmm-4.0-0:arm64 (4.16.0-1) ... Setting up libclipper2:arm64 (2.1.20201109-2+b3) ... Setting up fftw-dev (2.1.5-7+b1) ... Setting up libegl1-mesa-dev:arm64 (24.3.3-1) ... Setting up libgtk-4-dev:arm64 (4.16.12+ds-1) ... Setting up libclipper-dev:arm64 (2.1.20201109-2+b3) ... Setting up libgtkmm-4.0-dev:arm64 (4.16.0-1) ... Setting up libheif-plugin-dav1d:arm64 (1.19.5-1+b1) ... Setting up libheif-plugin-libde265:arm64 (1.19.5-1+b1) ... Setting up libheif1:arm64 (1.19.5-1+b1) ... Setting up libmagickcore-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... Setting up libmagickwand-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... Setting up imagemagick-7.q16 (8:7.1.1.43+dfsg1-1) ... update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist Setting up imagemagick (8:7.1.1.43+dfsg1-1) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for systemd (257.2-2) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/coot-1.1.09+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../coot_1.1.09+dfsg-4_source.changes dpkg-buildpackage: info: source package coot dpkg-buildpackage: info: source version 1.1.09+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_clean --buildsystem cmake make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'macros'. libtoolize: copying file 'macros/libtool.m4' libtoolize: copying file 'macros/ltoptions.m4' libtoolize: copying file 'macros/ltsugar.m4' libtoolize: copying file 'macros/ltversion.m4' libtoolize: copying file 'macros/lt~obsolete.m4' configure.ac:41: installing './compile' configure.ac:31: installing './missing' MoleculesToTriangles/CXXClasses/Makefile.am: installing './depcomp' api/Makefile.am:113: installing './py-compile' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_configure -- --with-enhanced-ligand-tools --disable-static --with-gemmi=/usr/lib/aarch64-linux-gnu --with-libdw --with-sound ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-enhanced-ligand-tools --disable-static --with-gemmi=/usr/lib/aarch64-linux-gnu --with-libdw --with-sound checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking which libtool initialization strategy to adopt... AC-PROG-LIBTOOL checking what warning flags to pass to the C compiler... -Wall -Wunused checking what language compliance flags to pass to the C compiler... checking what warning flags to pass to the C++ compiler... -Wall -Wno-unused checking what language compliance flags to pass to the C++ compiler... checking for sys/stdtypes.h... no checking for OpenMP flag of C compiler... -fopenmp checking whether g++ supports C++11 features by default... yes checking for std::thread in thread... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking if this is MINGW on Windows... no checking if this is msys2 windows 64... no checking for libpng >= 1.2... yes checking for cairo >= 1.14... yes checking for SQLite3... yes checking for libdw >= 0.20... yes checking for mmdb2... yes checking for ssm... yes checking for non-prefixed single-precision FFTW2 (fftw.h)... no yes checking for Clipper... yes checking for gsl... yes checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_blas_dgemm in -lgsl... yes checking for glm >= 0.9.9... yes checking for gtk4 >= 4.4... yes checking for epoxy >= 1.5... yes checking for a Python interpreter with version >= 3.7... python3 checking for python3... /usr/bin/python3 checking for python3 version... 3.13 checking for python3 platform... linux checking for python3 script directory... ${prefix}/lib/python3/dist-packages checking for python3 extension module directory... ${exec_prefix}/lib/python3/dist-packages checking for python3.13... (cached) /usr/bin/python3 checking for a version of Python >= '2.1.0'... yes checking for the sysconfig Python package... yes checking for Python include path... -I/usr/include/python3.13 checking for Python library path... -L/usr/lib/aarch64-linux-gnu -lpython3.13 checking for Python site-packages path... /usr/lib/python3.13/site-packages checking for Python platform specific site-packages path... /usr/lib/python3.13/site-packages checking python extra libraries... -ldl -lm checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... yes checking python3 module: requests... yes checking for pygobject-3.0 >= 3.36... yes checking for boostlib >= (102000)... yes checking whether the Boost::Thread library is available... yes checking for exit in -lboost_thread... yes checking whether the Boost::Python library is available... yes checking whether boost_python is the correct library... no checking whether boost_python312 is the correct library... yes checking for RDKit in /usr OK, good we found RDKit in /usr ENHANCED_LIGAND_TOOLS_CPPFLAGS -DMAKE_ENHANCED_LIGAND_TOOLS checking for GEMMI... yes checking build type... Linux-aarch64-debian-trixie-sid-gtk4 checking for sound... yes checking for vorbisfile >= 1.2... yes checking for alsa >= 1.2... yes Not using MySQL database checking for curl >= 7.9.7... 8.11.1 checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating macros/Makefile config.status: creating pdb-templates/Makefile config.status: creating scheme/Makefile config.status: creating python/Makefile config.status: creating compat/Makefile config.status: creating utils/Makefile config.status: creating coot-utils/Makefile config.status: creating protein_db/Makefile config.status: creating ccp4mg-utils/Makefile config.status: creating coords/Makefile config.status: creating db-main/Makefile config.status: creating density-contour/Makefile config.status: creating angles/Makefile config.status: creating mini-mol/Makefile config.status: creating skeleton/Makefile config.status: creating ligand/Makefile config.status: creating geometry/Makefile config.status: creating ideal/Makefile config.status: creating build/Makefile config.status: creating analysis/Makefile config.status: creating high-res/Makefile config.status: creating cootaneer/Makefile config.status: creating cootilus/Makefile config.status: creating greg-tests/Makefile config.status: creating python-tests/Makefile config.status: creating lidia-core/Makefile config.status: creating doc/Makefile config.status: creating validation-graphs/Makefile config.status: creating python/coot_load_modules.py config.status: creating data/Makefile config.status: creating data/rama-coeffs/Makefile config.status: creating data/metal/Makefile config.status: creating data/cho-models/Makefile config.status: creating data/cho-acedrg/Makefile config.status: creating glTF/Makefile config.status: creating pixmaps/Makefile config.status: creating pixmaps/icons/Makefile config.status: creating textures/Makefile config.status: creating sounds/Makefile config.status: creating rama-data/Makefile config.status: creating man/Makefile config.status: creating api/Makefile config.status: creating pli/Makefile config.status: creating pyrogen/Makefile config.status: creating pyrogen/pyrogen config.status: creating layla/Makefile config.status: creating MoleculesToTriangles/Makefile config.status: creating MoleculesToTriangles/CXXSurface/Makefile config.status: creating MoleculesToTriangles/CXXSurface/MoleculesToTrianglesCXXSurface.pc config.status: creating MoleculesToTriangles/CXXClasses/Makefile config.status: creating MoleculesToTriangles/CXXClasses/MoleculesToTrianglesCXXClasses.pc config.status: creating auxil/Makefile config.status: creating auxil/catcheck/Makefile config.status: creating auxil/rama/Makefile config.status: creating auxil/sec-str/Makefile config.status: creating auxil/strand-analysis/Makefile config.status: creating auxil/vectors/Makefile config.status: creating src/Makefile config.status: creating src/coot config.status: creating src/coot-relocatable-binaries config.status: creating ui/Makefile config.status: executing depfiles commands config.status: executing libtool commands dh_auto_configure --buildsystem cmake cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Looking for mmdb2/mmdb_defs.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libmmdb2.so -- Looking for ssm/ssm_vxedge.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libssm.so -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for clipper/clipper.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-core.so -- FFTW2 libraries - /usr/lib/libsfftw.so -- - /usr/lib/libsrfftw.so -- FFTW2 header directory - /usr/include -- Performing Test _LINKING_WITH_CLIPPER_CORE -- Performing Test _LINKING_WITH_CLIPPER_CORE - Success -- Looking for clipper/clipper-mmdb.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-mmdb.so -- Looking for clipper/clipper-ccp4.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so -- Looking for clipper/clipper-contrib.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-contrib.so -- Looking for clipper/clipper-minimol.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-minimol.so -- Looking for clipper/clipper-cif.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-cif.so -- CCP4 include directory: /usr/include -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/aarch64-linux-gnu/libblas.so -- Found GSL: /usr/include (found version "2.8") -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found PNG: /usr/lib/aarch64-linux-gnu/libpng.so (found version "1.6.45") -- Found gemmi version 0.6.5 -- Found Python: /usr/bin/python3 (found version "3.13.1") found components: Interpreter CMake Warning (dev) at CMakeLists.txt:27 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams system python regex thread serialization -- Found Python: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3.10") found components: Interpreter Development.Module Development.SABIModule -- Note: MAKE_ENHANCED_LIGAND_TOOLS was not enabled -- Configuring done (4.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' Making all in auxil make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making all in catcheck make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' Making all in rama make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' Making all in sec-str make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' Making all in strand-analysis make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' Making all in vectors make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making all in scheme make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' Making all in python make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' Making all in pdb-templates make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' Making all in macros make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' Making all in compat make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o getopt.lo getopt.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 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-DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c getopt.cc -fPIC -DPIC -o .libs/getopt.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-compat.la -rpath /usr/lib/aarch64-linux-gnu getopt.lo getopt1.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/getopt.o .libs/getopt1.o -L/usr/lib/gcc/aarch64-linux-gnu/14 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'/build/reproducible-path/coot-1.1.09+dfsg/compat' Making all in utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 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-I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o setup-syminfo.lo setup-syminfo.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gdk-keysyms.lo gdk-keysyms.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 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-DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dodec.lo dodec.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o win-compat.lo win-compat.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o threads.lo threads.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pir-alignment.lo pir-alignment.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atomic-numbers.cc -fPIC -DPIC -o .libs/atomic-numbers.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-utils.cc -fPIC -DPIC -o .libs/coot-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gdk-keysyms.cc -fPIC -DPIC -o .libs/gdk-keysyms.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-fasta.cc -fPIC -DPIC -o .libs/coot-fasta.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c setup-syminfo.cc -fPIC -DPIC -o .libs/setup-syminfo.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dodec.cc -fPIC -DPIC -o .libs/dodec.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c hsv-rgb.cc -fPIC -DPIC -o .libs/hsv-rgb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pir-alignment.cc -fPIC -DPIC -o .libs/pir-alignment.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c base64-encode-decode.cc -fPIC -DPIC -o .libs/base64-encode-decode.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c win-compat.cc -fPIC -DPIC -o .libs/win-compat.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c threads.cc -fPIC -DPIC -o .libs/threads.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c align-utils.cc -fPIC -DPIC -o .libs/align-utils.o In file included from atomic-numbers.cc:22: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from gdk-keysyms.cc:23: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from setup-syminfo.cc:27: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o split-indices.lo split-indices.cc In file included from pir-alignment.cc:28: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from hsv-rgb.cc:29: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o radix.lo radix.cc In file included from coot-fasta.cc:25: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o logging.lo logging.cc In file included from threads.cc:27: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o insertion-sort.lo insertion-sort.cc In file included from coot-utils.cc:59: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c split-indices.cc -fPIC -DPIC -o .libs/split-indices.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o colour-holder.lo colour-holder.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c radix.cc -fPIC -DPIC -o .libs/radix.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c logging.cc -fPIC -DPIC -o .libs/logging.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c insertion-sort.cc -fPIC -DPIC -o .libs/insertion-sort.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c colour-holder.cc -fPIC -DPIC -o .libs/colour-holder.o /bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-utils.lo coot-fasta.lo atomic-numbers.lo setup-syminfo.lo gdk-keysyms.lo hsv-rgb.lo dodec.lo win-compat.lo threads.lo align-utils.lo base64-encode-decode.lo pir-alignment.lo split-indices.lo radix.lo logging.lo insertion-sort.lo colour-holder.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -ldw -lelf libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-utils.o .libs/coot-fasta.o .libs/atomic-numbers.o .libs/setup-syminfo.o .libs/gdk-keysyms.o .libs/hsv-rgb.o .libs/dodec.o .libs/win-compat.o .libs/threads.o .libs/align-utils.o .libs/base64-encode-decode.o .libs/pir-alignment.o .libs/split-indices.o .libs/radix.o .libs/logging.o .libs/insertion-sort.o .libs/colour-holder.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -ldw -lelf -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-utils.so.0 -o .libs/libcoot-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-utils.so.0" && ln -s "libcoot-utils.so.0.0.0" "libcoot-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-utils.so" && ln -s "libcoot-utils.so.0.0.0" "libcoot-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-utils.la" && ln -s "../libcoot-utils.la" "libcoot-utils.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' Making all in protein_db make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db.lo protein_db.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db_utils.lo protein_db_utils.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rna_db.lo rna_db.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db.cpp -fPIC -DPIC -o .libs/protein_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rna_db.cpp -fPIC -DPIC -o .libs/rna_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db_utils.cpp -fPIC -DPIC -o .libs/protein_db_utils.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-protein-db.la -rpath /usr/lib/aarch64-linux-gnu protein_db.lo protein_db_utils.lo rna_db.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/protein_db.o .libs/protein_db_utils.o .libs/rna_db.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-protein-db.so.0 -o .libs/libcoot-protein-db.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-protein-db.so.0" && ln -s "libcoot-protein-db.so.0.0.0" "libcoot-protein-db.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-protein-db.so" && ln -s "libcoot-protein-db.so.0.0.0" "libcoot-protein-db.so") libtool: link: ( cd ".libs" && rm -f "libcoot-protein-db.la" && ln -s "../libcoot-protein-db.la" "libcoot-protein-db.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' Making all in mini-mol make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-mol.lo mini-mol.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-mol-utils.lo mini-mol-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-quads.lo atom-quads.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-quads.cc -fPIC -DPIC -o .libs/atom-quads.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-mol.cc -fPIC -DPIC -o .libs/mini-mol.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-mol-utils.cc -fPIC -DPIC -o .libs/mini-mol-utils.o In file included from mini-mol.hh:29, from mini-mol.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from mini-mol.hh:29, from mini-mol-utils.hh:22, from mini-mol-utils.cc:22: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ mini-mol.cc: In member function 'std::pair coot::minimol::molecule::get_pos() const': mini-mol.cc:1654:36: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1654 | coot::minimol::molecule::get_pos() const { | ^~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/aarch64-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-mini-mol.so.0 -o .libs/libcoot-mini-mol.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so.0" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so") libtool: link: ( cd ".libs" && rm -f "libcoot-mini-mol.la" && ln -s "../libcoot-mini-mol.la" "libcoot-mini-mol.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' Making all in geometry make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' 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-Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o srs-interface.lo srs-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-geometry.cc -fPIC -DPIC -o .libs/protein-geometry.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-geometry-mmdb.cc -fPIC -DPIC -o .libs/protein-geometry-mmdb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dict-utils.cc -fPIC -DPIC -o .libs/dict-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mol-utils.cc -fPIC -DPIC -o .libs/mol-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse.cc -fPIC -DPIC -o .libs/cif-parse.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c energy-lib.cc -fPIC -DPIC -o .libs/energy-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c link.cc -fPIC -DPIC -o .libs/link.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-sbase.cc -fPIC -DPIC -o .libs/read-sbase.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c glyco-tools.cc -fPIC -DPIC -o .libs/glyco-tools.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dictionary-residue.cc -fPIC -DPIC -o .libs/dictionary-residue.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c srs-interface.cc -fPIC -DPIC -o .libs/srs-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chem_mods.cc -fPIC -DPIC -o .libs/chem_mods.o In file included from srs-interface.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from dict-utils.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-donor-acceptors.lo protein-donor-acceptors.cc In file included from energy-lib.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from read-sbase.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from link.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-graph.lo lbg-graph.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-donor-acceptors.cc -fPIC -DPIC -o .libs/protein-donor-acceptors.o In file included from protein-geometry.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-graph.cc -fPIC -DPIC -o .libs/lbg-graph.o In file included from chem_mods.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cif-parse.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from glyco-tools.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from dictionary-residue.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dreiding.lo dreiding.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dreiding.cc -fPIC -DPIC -o .libs/dreiding.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main-chain.lo main-chain.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c main-chain.cc -fPIC -DPIC -o .libs/main-chain.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o residue-and-atom-specs.lo residue-and-atom-specs.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o intercept-3GP.lo intercept-3GP.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-and-atom-specs.cc -fPIC -DPIC -o .libs/residue-and-atom-specs.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c intercept-3GP.cc -fPIC -DPIC -o .libs/intercept-3GP.o In file included from residue-and-atom-specs.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mol-utils-2.lo mol-utils-2.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o hydrophobic.lo hydrophobic.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mol-utils-2.cc -fPIC -DPIC -o .libs/mol-utils-2.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" 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-DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c hydrophobic.cc -fPIC -DPIC -o .libs/hydrophobic.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-metals-json.lo read-metals-json.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse-link.cc -fPIC -DPIC -o .libs/cif-parse-link.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 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-D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-metals-json.cc -fPIC -DPIC -o .libs/read-metals-json.o In file included from cif-parse-mon-lib.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from read-metals-json.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cif-parse-link.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/aarch64-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/cif-parse.o .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/mol-utils.o .libs/dictionary-residue.o .libs/link.o .libs/glyco-tools.o .libs/dict-utils.o .libs/chem_mods.o .libs/srs-interface.o .libs/protein-donor-acceptors.o .libs/lbg-graph.o .libs/dreiding.o .libs/main-chain.o .libs/residue-and-atom-specs.o .libs/intercept-3GP.o .libs/mol-utils-2.o .libs/hydrophobic.o .libs/cif-parse-link.o .libs/cif-parse-mon-lib.o .libs/read-metals-json.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/compat/.libs ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so.0" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so") libtool: link: ( cd ".libs" && rm -f "libcoot-geometry.la" && ln -s "../libcoot-geometry.la" "libcoot-geometry.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' Making all in lidia-core make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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"-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-molfile.cc -fPIC -DPIC -o .libs/lbg-molfile.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lig-build.cc -fPIC -DPIC -o .libs/lig-build.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-atom-type-t.cc -fPIC -DPIC -o .libs/cod-atom-type-t.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-atom-types.cc -fPIC -DPIC -o .libs/cod-atom-types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-residue.cc -fPIC -DPIC -o .libs/get-residue.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chemical-feature-clusters.cc -fPIC -DPIC -o .libs/chemical-feature-clusters.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bond-table-record-t.cc -fPIC -DPIC -o .libs/bond-table-record-t.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o svg-molecule.lo svg-molecule.cc In file included from lig-build.cc:25: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c svg-molecule.cc -fPIC -DPIC -o .libs/svg-molecule.o In file included from atom-types.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from lbg-molfile.hh:32, from lbg-molfile.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cod-types.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from rdkit-interface.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from chemical-feature-clusters.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from svg-molecule.hh:31, from svg-molecule.cc:29: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from atom-types.cc:30: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-atom-types.cc:28: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-types.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from bond-record-container-t.cc:28: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cod-atom-types.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-atom-type-t.cc:28: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from chemical-feature-clusters.cc:33: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from rdkit-interface.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from bond-record-container-t.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cod-atom-type-t.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/aarch64-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs 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/usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-lidia-core.so.0 -o .libs/libcoot-lidia-core.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so.0" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so") libtool: link: ( cd ".libs" && rm -f "libcoot-lidia-core.la" && ln -s "../libcoot-lidia-core.la" "libcoot-lidia-core.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' Making all in coot-utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c maps-spherical.cc -fPIC -DPIC -o .libs/maps-spherical.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c exp-fit.cc -fPIC -DPIC -o .libs/exp-fit.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trim.cc -fPIC -DPIC -o .libs/trim.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c find-water-baddies.cc -fPIC -DPIC -o .libs/find-water-baddies.o In file included from mmrrcc.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from pepflip-using-difference-map.cc:28: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from maps-spherical.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o diff-diff-map-peaks.lo diff-diff-map-peaks.cc In file included from coot-map-utils.hh:33, from blob-line.cc:27: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-map-utils.hh:33, from trim.cc:21: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-map-utils.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-map-utils.hh:33, from find-water-baddies.cc:29: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c diff-diff-map-peaks.cc -fPIC -DPIC -o .libs/diff-diff-map-peaks.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-texture.lo mini-texture.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o positron.lo positron.cc In file included from slurp-map.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o texture-as-floats.lo texture-as-floats.cc coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': coot-map-utils.cc:973:63: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils.lo coot-coord-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils-nucleotides.lo coot-coord-utils-nucleotides.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-texture.cc -fPIC -DPIC -o .libs/mini-texture.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c positron.cc -fPIC -DPIC -o .libs/positron.o In file included from coot-map-utils.cc:3842: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c texture-as-floats.cc -fPIC -DPIC -o .libs/texture-as-floats.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils.cc -fPIC -DPIC -o .libs/coot-coord-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils-nucleotides.cc -fPIC -DPIC -o .libs/coot-coord-utils-nucleotides.o In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/core/hkl_compute.h:48, from coot-map-utils.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': coot-map-utils.cc:682:39: required from here 682 | fphis_out[hri] = fphis_in[hkl]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/algorithm:60, from coot-map-utils.cc:23: /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = const double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': coot-map-utils.cc:4416:45: required from here 4416 | data.push_back(std::make_pair(A_data[i].first, y)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': coot-map-utils.cc:4501:87: required from here 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': coot-map-utils.cc:4656:69: required from here 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ In file included from positron.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-rama.lo coot-rama.cc In file included from coot-coord-utils.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-coord-utils-nucleotides.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from mini-texture.cc:28: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-h-bonds.lo coot-h-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-rama.cc -fPIC -DPIC -o .libs/coot-rama.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o hole.lo hole.cc In file included from coot-map-utils.hh:33, from texture-as-floats.cc:27: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-h-bonds.cc -fPIC -DPIC -o .libs/coot-h-bonds.o In file included from coot-rama.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-sm-cif.lo read-sm-cif.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c hole.cc -fPIC -DPIC -o .libs/hole.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bonded-pairs.lo bonded-pairs.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o helix-analysis.lo helix-analysis.cc /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': coot-map-utils.cc:973:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^~~~ coot-map-utils.cc: In lambda function: coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-sm-cif.cc -fPIC -DPIC -o .libs/read-sm-cif.o coot-map-utils.cc: In function 'void coot::util::reverse_map(clipper::Xmap*)': coot-map-utils.cc:4713:55: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4713 | std::pair mv = mean_and_variance(xmap); | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bonded-pairs.cc -fPIC -DPIC -o .libs/bonded-pairs.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c helix-analysis.cc -fPIC -DPIC -o .libs/helix-analysis.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o elastic.lo elastic.cc In file included from hole.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c elastic.cc -fPIC -DPIC -o .libs/elastic.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glyco-torsions.lo glyco-torsions.cc hole.cc: In member function 'std::pair coot::hole::optimize_point(const clipper::Coord_orth&, int)': hole.cc:253:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 253 | coot::hole::optimize_point(const clipper::Coord_orth &pt, int selhnd) { | ^ In file included from read-sm-cif.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-least-squares.lo coot-least-squares.cc In file included from elastic.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/clipper_instance.h:49, from read-sm-cif.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': read-sm-cif.cc:1096:38: required from here 1096 | if (!my_fsigf[ih.hkl()].missing()) { | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c glyco-torsions.cc -fPIC -DPIC -o .libs/glyco-torsions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-least-squares.cc -fPIC -DPIC -o .libs/coot-least-squares.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-overlaps.lo atom-overlaps.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o reduce.lo reduce.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-selection-container.lo atom-selection-container.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-overlaps.cc -fPIC -DPIC -o .libs/atom-overlaps.o In file included from glyco-torsions.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c reduce.cc -fPIC -DPIC -o .libs/reduce.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-selection-container.cc -fPIC -DPIC -o .libs/atom-selection-container.o coot-map-utils.cc: In lambda function: coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o contact-info.lo contact-info.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-shelx-ins.lo coot-shelx-ins.cc coot-map-utils.cc: In lambda function: coot-map-utils.cc:4501:87: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from atom-overlaps.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c contact-info.cc -fPIC -DPIC -o .libs/contact-info.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-shelx-ins.cc -fPIC -DPIC -o .libs/coot-shelx-ins.o In file included from reduce.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from atom-selection-container.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-shelx-ins.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o secondary-structure-headers.lo secondary-structure-headers.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o plane-utils.lo plane-utils.cc In file included from atom-selection-container.cc:33: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c secondary-structure-headers.cc -fPIC -DPIC -o .libs/secondary-structure-headers.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c plane-utils.cc -fPIC -DPIC -o .libs/plane-utils.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-beta-deviations.lo c-beta-deviations.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-beta-deviations.cc -fPIC -DPIC -o .libs/c-beta-deviations.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lidia-core-functions.lo lidia-core-functions.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lidia-core-functions.cc -fPIC -DPIC -o .libs/lidia-core-functions.o In file included from atom-selection-container.cc:915: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c contacts-by-bricks.cc -fPIC -DPIC -o .libs/contacts-by-bricks.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o stack-and-pair.lo stack-and-pair.cc In file included from merge-atom-selections.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c stack-and-pair.cc -fPIC -DPIC -o .libs/stack-and-pair.o In file included from contacts-by-bricks.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fast-eigens.lo fast-eigens.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fast-eigens.cc -fPIC -DPIC -o .libs/fast-eigens.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from lidia-core-functions.cc:29: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o strand-fragments.lo strand-fragments.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c strand-fragments.cc -fPIC -DPIC -o .libs/strand-fragments.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sfcalc-genmap.lo sfcalc-genmap.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 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-DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_shiftfield.lo coot_shiftfield.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cablam-markup.cc -fPIC -DPIC -o .libs/cablam-markup.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o shiftfield.lo shiftfield.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_shiftfield.cpp -fPIC -DPIC -o .libs/coot_shiftfield.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c shiftfield.cpp -fPIC -DPIC -o .libs/shiftfield.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fib-sphere.lo fib-sphere.cc coot-map-utils.cc: In function 'bool coot::util::map_fill_from_mtz(clipper::Xmap*, std::string, std::string, std::string, std::string, short int, float, short int, float)': coot-map-utils.cc:59:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 59 | coot::util::map_fill_from_mtz(clipper::Xmap *xmap, | ^~~~ In file included from cablam-markup.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o polar-atoms.lo polar-atoms.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from coot_shiftfield.h:31, from coot_shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': coot_shiftfield.cpp:153:81: required from here 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': coot_shiftfield.cpp:209:29: required from here 209 | fphi[ih] = fc[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fib-sphere.cc -fPIC -DPIC -o .libs/fib-sphere.o coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': coot_shiftfield.cpp:153:67: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; coot_shiftfield.cpp:209:16: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c polar-atoms.cc -fPIC -DPIC -o .libs/polar-atoms.o In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from shiftfield.h:31, from shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::F_phi; C = clipper::datatypes::Compute_scale_u_aniso >; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from sfcalc-genmap.cc:30: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_abcd_from_phifom; T = clipper::datatypes::ABCD]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::ABCD' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o 3d-texture.lo 3d-texture.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c 3d-texture.cc -fPIC -DPIC -o .libs/3d-texture.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o merge-molecules.lo merge-molecules.cc /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fragment-container.lo fragment-container.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c merge-molecules.cc -fPIC -DPIC -o .libs/merge-molecules.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fragment-container.cc -fPIC -DPIC -o .libs/fragment-container.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mutate.lo mutate.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o merge-C-and-N-terminii.lo merge-C-and-N-terminii.cc coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 121 | coot::shift_field_b_factor_refinement(const clipper::HKL_data< clipper::datatypes::F_sigF > &fo0, | ^~~~ coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mutate.cc -fPIC -DPIC -o .libs/mutate.o coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 coot_shiftfield.cpp:209:29: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c merge-C-and-N-terminii.cc -fPIC -DPIC -o .libs/merge-C-and-N-terminii.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cylinder.lo cylinder.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cylinder.cc -fPIC -DPIC -o .libs/cylinder.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o oct.lo oct.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo 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prideout-octasphere.cc -fPIC -DPIC -o .libs/prideout-octasphere.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit 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-DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-tree-extras.lo coot-tree-extras.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 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-I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lsq-improve.lo lsq-improve.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lsq-improve.cc -fPIC -DPIC -o .libs/lsq-improve.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c water-coordination.cc -fPIC -DPIC -o .libs/water-coordination.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils-glyco.lo coot-coord-utils-glyco.cc In file included from coot-coord-extras.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-tree-extras.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-coord-lsq.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" 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-mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils-glyco.cc -fPIC -DPIC -o .libs/coot-coord-utils-glyco.o In file included from coot-coord-utils-glyco.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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-DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c jed-flip.cc -fPIC -DPIC -o .libs/jed-flip.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-map-heavy.lo coot-map-heavy.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-map-heavy.cc -fPIC -DPIC -o .libs/coot-map-heavy.o In file included from ../mini-mol/mini-mol.hh:29, from coot-coord-extras.hh:33, from jed-flip.hh:32, from jed-flip.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-fffear.lo coot-fffear.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o spherical-harmonics.lo spherical-harmonics.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o segmap.lo segmap.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-fffear.cc -fPIC -DPIC -o .libs/coot-fffear.o In file included from coot-map-heavy.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c spherical-harmonics.cc -fPIC -DPIC -o .libs/spherical-harmonics.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c segmap.cc -fPIC -DPIC -o .libs/segmap.o In file included from ../mini-mol/mini-mol.hh:29, from coot-map-heavy.hh:28, from coot-fffear.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ coot-fffear.cc: In constructor 'coot::util::fffear_search::fffear_search(mmdb::Manager*, int, const clipper::Xmap&, float, bool)': coot-fffear.cc:159:70: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 159 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo glyco-torsions.lo coot-least-squares.lo atom-overlaps.lo reduce.lo atom-selection-container.lo contact-info.lo coot-shelx-ins.lo secondary-structure-headers.lo plane-utils.lo c-beta-deviations.lo lidia-core-functions.lo atom-tools.lo bonded-atoms.lo bricks.lo helix-like.lo merge-atom-selections.lo contacts-by-bricks.lo stack-and-pair.lo fast-eigens.lo strand-fragments.lo sfcalc-genmap.lo cablam-markup.lo coot_shiftfield.lo shiftfield.lo fib-sphere.lo polar-atoms.lo 3d-texture.lo merge-molecules.lo fragment-container.lo mutate.lo merge-C-and-N-terminii.lo cylinder.lo cylinder-with-rotation-translation.lo oct.lo prideout-octasphere.lo simple-mesh.lo shapes.lo cmtz-interface.lo pugixml.lo parse-pisa.lo gltf-export.lo pae.lo ../lidia-core/libcoot-lidia-core.la ../protein_db/libcoot-protein-db.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-utils.o .libs/coot-coord-utils-nucleotides.o .libs/coot-rama.o .libs/coot-h-bonds.o .libs/hole.o .libs/read-sm-cif.o .libs/bonded-pairs.o .libs/helix-analysis.o .libs/elastic.o .libs/glyco-torsions.o .libs/coot-least-squares.o .libs/atom-overlaps.o .libs/reduce.o .libs/atom-selection-container.o .libs/contact-info.o .libs/coot-shelx-ins.o .libs/secondary-structure-headers.o .libs/plane-utils.o .libs/c-beta-deviations.o .libs/lidia-core-functions.o .libs/atom-tools.o .libs/bonded-atoms.o .libs/bricks.o .libs/helix-like.o .libs/merge-atom-selections.o .libs/contacts-by-bricks.o .libs/stack-and-pair.o .libs/fast-eigens.o .libs/strand-fragments.o .libs/sfcalc-genmap.o .libs/cablam-markup.o .libs/coot_shiftfield.o .libs/shiftfield.o .libs/fib-sphere.o .libs/polar-atoms.o .libs/3d-texture.o .libs/merge-molecules.o .libs/fragment-container.o .libs/mutate.o .libs/merge-C-and-N-terminii.o .libs/cylinder.o .libs/cylinder-with-rotation-translation.o .libs/oct.o .libs/prideout-octasphere.o .libs/simple-mesh.o .libs/shapes.o .libs/cmtz-interface.o .libs/pugixml.o .libs/parse-pisa.o .libs/gltf-export.o .libs/pae.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/protein_db/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs ../lidia-core/.libs/libcoot-lidia-core.so ../protein_db/.libs/libcoot-protein-db.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-utils.so.0 -o .libs/libcoot-coord-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-coord-utils.so.0" && ln -s "libcoot-coord-utils.so.0.0.0" "libcoot-coord-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coord-utils.so" && ln -s "libcoot-coord-utils.so.0.0.0" "libcoot-coord-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coord-utils.la" && ln -s "../libcoot-coord-utils.la" "libcoot-coord-utils.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-map-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo pepflip-using-difference-map.lo exp-fit.lo blob-line.lo slurp-map.lo find-water-baddies.lo diff-diff-map-peaks.lo mini-texture.lo positron.lo texture-as-floats.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-extras.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo jed-flip.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-extras.o .libs/coot-coord-lsq.o .libs/coot-tree-extras.o .libs/water-coordination.o .libs/lsq-improve.o .libs/coot-coord-utils-glyco.o .libs/jed-flip.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-extras.so.0 -o .libs/libcoot-coord-extras.so.0.0.0 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-utils.o .libs/peak-search.o .libs/peak-search-from-list.o .libs/trim.o .libs/xmap-stats.o .libs/maps-spherical.o .libs/pepflip-using-difference-map.o .libs/exp-fit.o .libs/blob-line.o .libs/slurp-map.o .libs/find-water-baddies.o .libs/diff-diff-map-peaks.o .libs/mini-texture.o .libs/positron.o .libs/texture-as-floats.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -lz -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-utils.so.0 -o .libs/libcoot-map-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so.0" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so") libtool: link: (cd ".libs" && rm -f "libcoot-coord-extras.so.0" && ln -s "libcoot-coord-extras.so.0.0.0" "libcoot-coord-extras.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coord-extras.so" && ln -s "libcoot-coord-extras.so.0.0.0" "libcoot-coord-extras.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coord-extras.la" && ln -s "../libcoot-coord-extras.la" "libcoot-coord-extras.la" ) libtool: link: ( cd ".libs" && rm -f "libcoot-map-utils.la" && ln -s "../libcoot-map-utils.la" "libcoot-map-utils.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-mmrrcc mmrrcc.o ./libcoot-map-utils.la ./libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-map-heavy.la -rpath /usr/lib/aarch64-linux-gnu coot-map-heavy.lo coot-fffear.lo spherical-harmonics.lo segmap.lo libcoot-map-utils.la libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-heavy.o .libs/coot-fffear.o .libs/spherical-harmonics.o .libs/segmap.o -Wl,-rpath 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/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-heavy.so.0 -o .libs/libcoot-map-heavy.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so.0" && ln -s "libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so" && ln -s "libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so") libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-mmrrcc mmrrcc.o ./.libs/libcoot-map-utils.so ./.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: ( cd ".libs" && rm -f "libcoot-map-heavy.la" && ln -s "../libcoot-map-heavy.la" "libcoot-map-heavy.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' Making all in angles make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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-DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo `test -f 'AngleInfo-theta_2-autogen.cc' || echo './'`AngleInfo-theta_2-autogen.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo-theta_2-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo-angle-torsions-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-AngleInfo.la -rpath /usr/lib/aarch64-linux-gnu libcoot_AngleInfo_la-AngleInfo.lo libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-AngleInfo.so.0 -o .libs/libcoot-AngleInfo.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-AngleInfo.so.0" && ln -s "libcoot-AngleInfo.so.0.0.0" "libcoot-AngleInfo.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-AngleInfo.so" && ln -s "libcoot-AngleInfo.so.0.0.0" "libcoot-AngleInfo.so") libtool: link: ( cd ".libs" && rm -f "libcoot-AngleInfo.la" && ln -s "../libcoot-AngleInfo.la" "libcoot-AngleInfo.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' Making all in ccp4mg-utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o geomutil.lo geomutil.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mgtree.lo mgtree.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cartesian.lo cartesian.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o matrix.lo matrix.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o quat.lo quat.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ppmutil.lo ppmutil.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cartesian.cc -fPIC -DPIC -o .libs/cartesian.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mgtree.cc -fPIC -DPIC -o .libs/mgtree.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c geomutil.cc -fPIC -DPIC -o .libs/geomutil.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c matrix.cc -fPIC -DPIC -o .libs/matrix.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c quat.cc -fPIC -DPIC -o .libs/quat.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ppmutil.cc -fPIC -DPIC -o .libs/ppmutil.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libccp4mg-utils.la -rpath /usr/lib/aarch64-linux-gnu geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo -lpng16 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/geomutil.o .libs/mgtree.o .libs/cartesian.o .libs/matrix.o .libs/quat.o .libs/ppmutil.o -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4mg-utils.so.0 -o .libs/libccp4mg-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libccp4mg-utils.so.0" && ln -s "libccp4mg-utils.so.0.0.0" "libccp4mg-utils.so.0") libtool: link: (cd ".libs" && rm -f "libccp4mg-utils.so" && ln -s "libccp4mg-utils.so.0.0.0" "libccp4mg-utils.so") libtool: link: ( cd ".libs" && rm -f "libccp4mg-utils.la" && ln -s "../libccp4mg-utils.la" "libccp4mg-utils.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' Making all in db-main make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o db-main.lo db-main.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o db-strands.lo db-strands.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c db-main.cc -fPIC -DPIC -o .libs/db-main.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c db-strands.cc -fPIC -DPIC -o .libs/db-strands.o In file included from db-main.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from db-strands.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-db-main.la -rpath /usr/lib/aarch64-linux-gnu db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/db-main.o .libs/db-strands.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../mini-mol/.libs/libcoot-mini-mol.so ../lidia-core/.libs/libcoot-lidia-core.so ../coot-utils/.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-db-main.so.0 -o .libs/libcoot-db-main.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-db-main.so.0" && ln -s "libcoot-db-main.so.0.0.0" "libcoot-db-main.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-db-main.so" && ln -s "libcoot-db-main.so.0.0.0" "libcoot-db-main.so") libtool: link: ( cd ".libs" && rm -f "libcoot-db-main.la" && ln -s "../libcoot-db-main.la" "libcoot-db-main.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' Making all in analysis make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bfactan.o bfactan.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bfkurt.lo bfkurt.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mogul.lo mogul.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o kolmogorov.lo kolmogorov.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o stats.lo stats.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" 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"-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bfkurt.cc -fPIC -DPIC -o .libs/bfkurt.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mogul.cc -fPIC -DPIC -o .libs/mogul.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c kolmogorov.cc -fPIC -DPIC -o .libs/kolmogorov.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c typed-distances.cc -fPIC -DPIC -o .libs/typed-distances.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c stats.cc -fPIC -DPIC -o .libs/stats.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c daca.cc -fPIC -DPIC -o .libs/daca.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cablam.cc -fPIC -DPIC -o .libs/cablam.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c b-factor-histogram.cc -fPIC -DPIC -o .libs/b-factor-histogram.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rna-backbone.cc -fPIC -DPIC -o .libs/rna-backbone.o In file included from stats.cc:25: stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from kolmogorov.cc:25: stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from mogul.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from mogul.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from b-factor-histogram.cc:288: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from daca.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from rna-backbone.cc:31: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-analysis.la -rpath /usr/lib/aarch64-linux-gnu bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo b-factor-histogram.lo daca.lo rna-backbone.lo ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams libtool: link: g++ -fPIC -DPIC -shared -nostdlib 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/usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-analysis.so.0 -o .libs/libcoot-analysis.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-analysis.so.0" && ln -s "libcoot-analysis.so.0.0.0" "libcoot-analysis.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-analysis.so" && ln -s "libcoot-analysis.so.0.0.0" "libcoot-analysis.so") libtool: link: ( cd ".libs" && rm -f "libcoot-analysis.la" && ln -s "../libcoot-analysis.la" "libcoot-analysis.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-bfactan bfactan.o libcoot-analysis.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-bfactan bfactan.o ./.libs/libcoot-analysis.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' Making all in cootaneer make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o buccaneer-prot.lo buccaneer-prot.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time 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-DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cootaneer-sequence.lo cootaneer-sequence.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 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-DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c buccaneer-prot.cpp -fPIC -DPIC -o .libs/buccaneer-prot.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c buccaneer-sequence.cpp -fPIC -DPIC -o .libs/buccaneer-sequence.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootaneer.la -rpath /usr/lib/aarch64-linux-gnu buccaneer-lib.lo buccaneer-prot.lo buccaneer-sequence.lo cootaneer-sequence.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/buccaneer-lib.o .libs/buccaneer-prot.o .libs/buccaneer-sequence.o .libs/cootaneer-sequence.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcootaneer.so.0 -o .libs/libcootaneer.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcootaneer.so.0" && ln -s "libcootaneer.so.0.0.0" "libcootaneer.so.0") libtool: link: (cd ".libs" && rm -f "libcootaneer.so" && ln -s "libcootaneer.so.0.0.0" "libcootaneer.so") libtool: link: ( cd ".libs" && rm -f "libcootaneer.la" && ln -s "../libcootaneer.la" "libcootaneer.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' Making all in ideal make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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-DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mods.lo mods.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 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-DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pepflip.lo pepflip.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ng.cc -fPIC -DPIC -o .libs/ng.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-restraints.cc -fPIC -DPIC -o .libs/make-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mods.cc -fPIC -DPIC -o .libs/mods.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pepflip.cc -fPIC -DPIC -o .libs/pepflip.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-restraint.cc -fPIC -DPIC -o .libs/simple-restraint.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-squareds.cc -fPIC -DPIC -o .libs/chi-squareds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c distortion.cc -fPIC -DPIC -o .libs/distortion.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chirals.cc -fPIC -DPIC -o .libs/chirals.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flanking.cc -fPIC -DPIC -o .libs/flanking.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c extra-restraints.cc -fPIC -DPIC -o .libs/extra-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gradients.cc -fPIC -DPIC -o .libs/gradients.o In file included from mini-rsr.cc:56: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from mini-rsr.cc:58: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o regularize-minimol.lo regularize-minimol.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from chirals.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from distortion.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from make-restraints.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from gradients.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c regularize-minimol.cc -fPIC -DPIC -o .libs/regularize-minimol.o In file included from simple-restraint.hh:162, from flanking.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from ng.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:174, from mini-rsr.cc:60: zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from mini-rsr.cc:66: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from simple-restraint.hh:162, from simple-restraint.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from mods.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from extra-restraints.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from chi-squareds.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from chirals.cc:35: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.cc: In member function 'std::pair coot::simple_restraint::distortion(mmdb::Atom**, const double&) const': simple-restraint.cc:4068:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4068 | coot::simple_restraint::distortion(mmdb::PAtom *atoms, const double &lj_epsilon) const { | ^~~~~ In file included from simple-restraint.hh:162, from regularize-minimol.hh:25, from regularize-minimol.cc:22: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from mini-rsr.cc:41: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lograma.lo lograma.cpp ng.cc: In member function 'void coot::restraints_container_t::analyze_for_bad_restraints(coot::restraint_type_t, double)': ng.cc:2354:97: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2354 | std::pair distortion_pair = rest.distortion(atom, lennard_jones_epsilon); // 2nd arg is not used for bonds | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lograma.cpp -fPIC -DPIC -o .libs/lograma.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o process-dfs-in-range.lo process-dfs-in-range.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c process-dfs-in-range.cc -fPIC -DPIC -o .libs/process-dfs-in-range.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o extra-restraints-kk.lo extra-restraints-kk.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c extra-restraints-kk.cc -fPIC -DPIC -o .libs/extra-restraints-kk.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-restraint-kk.lo simple-restraint-kk.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-restraint-kk.cc -fPIC -DPIC -o .libs/simple-restraint-kk.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o torsion-bonds.lo torsion-bonds.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-compare-residues.lo coot-compare-residues.cc In file included from simple-restraint.hh:162, from process-dfs-in-range.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c torsion-bonds.cc -fPIC -DPIC -o .libs/torsion-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-compare-residues.cc -fPIC -DPIC -o .libs/coot-compare-residues.o In file included from simple-restraint.hh:162, from extra-restraints-kk.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o link-restraints.lo link-restraints.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c link-restraints.cc -fPIC -DPIC -o .libs/link-restraints.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o parallel-planes.lo parallel-planes.cc In file included from simple-restraint.hh:162, from torsion-bonds.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c parallel-planes.cc -fPIC -DPIC -o .libs/parallel-planes.o In file included from simple-restraint.hh:162, from simple-restraint-kk.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from coot-compare-residues.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from parallel-planes.cc:22: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pull-restraint.lo pull-restraint.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trans-peptide.lo trans-peptide.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pull-restraint.cc -fPIC -DPIC -o .libs/pull-restraint.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trans-peptide.cc -fPIC -DPIC -o .libs/trans-peptide.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o model-bond-deltas.lo model-bond-deltas.cc In file included from simple-restraint.hh:162, from link-restraints.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o write-png.lo write-png.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c model-bond-deltas.cc -fPIC -DPIC -o .libs/model-bond-deltas.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o zo-rama.lo zo-rama.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o crankshaft.lo crankshaft.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c write-png.cc -fPIC -DPIC -o .libs/write-png.o simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c zo-rama.cc -fPIC -DPIC -o .libs/zo-rama.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi.lo phi-psi.cc In file included from parallel-planes.cc:23: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c crankshaft.cc -fPIC -DPIC -o .libs/crankshaft.o In file included from zo-rama.hh:42, from write-png.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi.cc -fPIC -DPIC -o .libs/phi-psi.o In file included from simple-restraint.hh:162, from pull-restraint.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o neutron.lo neutron.cc In file included from zo-rama.hh:42, from zo-rama.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lv.o lv.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c neutron.cc -fPIC -DPIC -o .libs/neutron.o simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from model-bond-deltas.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from trans-peptide.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from lv.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from zo-rama.hh:42, from crankshaft.hh:37, from crankshaft.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from model-bond-deltas.cc:29: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from crankshaft.cc:36: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from crankshaft.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1393:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1393 | const zo::rama_table_set &zorts) const { | ^~~~~ In file included from simple-restraint.hh:162, from neutron.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from lv.cc:29: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': crankshaft.cc:871:71: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 871 | std::pair grads = zorts.df(pp, rt); | ^ crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': crankshaft.cc:833:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 833 | coot::crankshaft::optimize_a_triple::df(const gsl_vector *v, | ^~~~ crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-ideal.la -rpath /usr/lib/aarch64-linux-gnu simple-restraint.lo make-restraints.lo ng.lo chi-squareds.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo process-dfs-in-range.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo pull-restraint.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo neutron.lo ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpng16 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/simple-restraint.o .libs/make-restraints.o .libs/ng.o .libs/chi-squareds.o .libs/mods.o .libs/distortion.o .libs/chirals.o .libs/flanking.o .libs/gradients.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/process-dfs-in-range.o .libs/extra-restraints-kk.o .libs/simple-restraint-kk.o .libs/torsion-bonds.o .libs/coot-compare-residues.o .libs/link-restraints.o .libs/parallel-planes.o .libs/pull-restraint.o .libs/trans-peptide.o .libs/model-bond-deltas.o .libs/write-png.o .libs/zo-rama.o .libs/crankshaft.o .libs/phi-psi.o .libs/neutron.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -lpthread ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-ideal.so.0 -o .libs/libcoot-ideal.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-ideal.so.0" && ln -s "libcoot-ideal.so.0.0.0" "libcoot-ideal.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-ideal.so" && ln -s "libcoot-ideal.so.0.0.0" "libcoot-ideal.so") libtool: link: ( cd ".libs" && rm -f "libcoot-ideal.la" && ln -s "../libcoot-ideal.la" "libcoot-ideal.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o mini-rsr-bin mini-rsr.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -lpthread /bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o coot-ligand-validation-bin lv.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lpthread libtool: link: g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/mini-rsr-bin mini-rsr.o ./.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread libtool: link: g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-ligand-validation-bin lv.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 ./.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so -lpthread make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' Making all in ligand make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' g++ 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../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rigid-body.lo rigid-body.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand-extras.cc -fPIC -DPIC -o .libs/ligand-extras.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand.cc -fPIC -DPIC -o .libs/ligand.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c wiggly-ligand.cc -fPIC -DPIC -o .libs/wiggly-ligand.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c monomer-utils.cc -fPIC -DPIC -o .libs/monomer-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue_by_phi_psi.cc -fPIC -DPIC -o .libs/residue_by_phi_psi.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dunbrack.cc -fPIC -DPIC -o .libs/dunbrack.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fast-ss-search.cc -fPIC -DPIC -o .libs/fast-ss-search.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rigid-body.cc -fPIC -DPIC -o .libs/rigid-body.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-angles-autogen.cc -fPIC -DPIC -o .libs/chi-angles-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c helix-placement.cc -fPIC -DPIC -o .libs/helix-placement.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-angles.cc -fPIC -DPIC -o .libs/chi-angles.o In file included from find-ligand.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from dunbrack.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from ligand.cc:60: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ligand-extras.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from rigid-body.hh:25, from rigid-body.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../mini-mol/mini-mol-utils.hh:22, from fast-ss-search.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from ligand.cc:69: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from ligand.cc:72: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from chi-angles.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ligand-extras.cc: In member function 'std::pair coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager*) const': ligand-extras.cc:176:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 176 | coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager *mol) const { | ^~~~~ In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, from residue_by_phi_psi.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, from helix-placement.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ideal-rna.lo ideal-rna.cc In file included from ../ideal/simple-restraint.hh:162, from ../ideal/regularize-minimol.hh:25, from wiggly-ligand.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ideal-rna.cc -fPIC -DPIC -o .libs/ideal-rna.o ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from ligand.cc:55: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o richardson-rotamers.lo richardson-rotamers.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c richardson-rotamers.cc -fPIC -DPIC -o .libs/richardson-rotamers.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o richardson-rotamer.lo richardson-rotamer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c richardson-rotamer.cc -fPIC -DPIC -o .libs/richardson-rotamer.o In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from residue_by_phi_psi.cc:22: In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t<((bool)std::__and_, std::is_move_assignable<_T2> >::value), std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::residue_by_phi_psi::connecting_atoms_t& coot::residue_by_phi_psi::connecting_atoms_t::operator=(coot::residue_by_phi_psi::connecting_atoms_t&&)' at residue_by_phi_psi.hh:46:13, inlined from 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const' at residue_by_phi_psi.cc:682:73: /usr/include/c++/14/bits/stl_pair.h:938:9: warning: '.coot::residue_by_phi_psi::connecting_atoms_t::upstream_C.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 938 | second = std::forward(__p.second); | ^~~~~~ residue_by_phi_psi.cc: In member function 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const': residue_by_phi_psi.cc:682:80: note: '' declared here 682 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t<((bool)std::__and_, std::is_move_assignable<_T2> >::value), std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::residue_by_phi_psi::connecting_atoms_t& coot::residue_by_phi_psi::connecting_atoms_t::operator=(coot::residue_by_phi_psi::connecting_atoms_t&&)' at residue_by_phi_psi.hh:46:13, inlined from 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const' at residue_by_phi_psi.cc:682:73: /usr/include/c++/14/bits/stl_pair.h:938:9: warning: '.coot::residue_by_phi_psi::connecting_atoms_t::downstream_N.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 938 | second = std::forward(__p.second); | ^~~~~~ residue_by_phi_psi.cc: In member function 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const': residue_by_phi_psi.cc:682:80: note: '' declared here 682 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rotamer.lo rotamer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer.cc -fPIC -DPIC -o .libs/rotamer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o torsion-general.lo torsion-general.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rotamer-tables.lo rotamer-tables.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o primitive-chi-angles.lo primitive-chi-angles.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c torsion-general.cc -fPIC -DPIC -o .libs/torsion-general.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer-tables.cc -fPIC -DPIC -o .libs/rotamer-tables.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c primitive-chi-angles.cc -fPIC -DPIC -o .libs/primitive-chi-angles.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dipole.lo dipole.cc In file included from rotamer.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dipole.cc -fPIC -DPIC -o .libs/dipole.o In file included from dipole.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from rotamer-tables.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o base-pairing.lo base-pairing.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o backrub-rotamer.lo backrub-rotamer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 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-DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trace.lo trace.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c backrub-rotamer.cc -fPIC -DPIC -o .libs/backrub-rotamer.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trace.cc -fPIC -DPIC -o .libs/trace.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trace-2.lo trace-2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trace-2.cc -fPIC -DPIC -o .libs/trace-2.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o multi-peptide.lo multi-peptide.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligands-db.lo ligands-db.cc In file included from backrub-rotamer.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from multi-peptide.hh:32, from trace.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c multi-peptide.cc -fPIC -DPIC -o .libs/multi-peptide.o In file included from ../mini-mol/mini-mol.hh:29, from trace.hh:29, from trace-2.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligands-db.cc -fPIC -DPIC -o .libs/ligands-db.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o joining-residues.lo joining-residues.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand-score-card.lo ligand-score-card.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c joining-residues.cc -fPIC -DPIC -o .libs/joining-residues.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand-score-card.cc -fPIC -DPIC -o .libs/ligand-score-card.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o side-chain-densities.lo side-chain-densities.cc In file included from ligands-db.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ backrub-rotamer.cc: In function 'std::pair > coot::get_clash_score(const minimol::molecule&, atom_selection_container_t, int)': backrub-rotamer.cc:596:76: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 596 | std::pair rotamer_info = a_rotamer.get_pos(); | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c side-chain-densities.cc -fPIC -DPIC -o .libs/side-chain-densities.o In file included from ../mini-mol/mini-mol.hh:29, from ligand-score-card.hh:31, from ligand-score-card.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o tube-finder.lo tube-finder.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o smith-waterman.lo smith-waterman.cc trace.cc: In constructor 'coot::trace::trace(const clipper::Xmap&)': trace.cc:53:61: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 53 | std::pair mv = util::mean_and_variance(xmap); | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c tube-finder.cc -fPIC -DPIC -o .libs/tube-finder.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o side-chain.lo side-chain.cc In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, from joining-residues.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c smith-waterman.cc -fPIC -DPIC -o .libs/smith-waterman.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c side-chain.cc -fPIC -DPIC -o .libs/side-chain.o In file included from tube-finder.cc:30: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o refine-isolated-chain.lo refine-isolated-chain.cc In file included from ../ideal/simple-restraint.hh:162, from multi-peptide.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from smith-waterman.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c refine-isolated-chain.cc -fPIC -DPIC -o .libs/refine-isolated-chain.o In file included from side-chain-densities.cc:38: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from side-chain.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ tube-finder.cc: In constructor 'coot::tube_finder_t::tube_finder_t(const clipper::Xmap&)': tube-finder.cc:45:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mv = util::mean_and_variance(blurred_xmap); | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from multi-peptide.cc:32: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': side-chain-densities.cc:1293:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~~ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o find-waters.o find-waters.cc In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from find-waters.cc:45: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-ligands-db.o make-ligands-db.cc In file included from ../ideal/simple-restraint.hh:162, from refine-isolated-chain.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o identify-protein.o identify-protein.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libres-tracer.lo libres-tracer.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-rsr-extend-fragments.lo rama-rsr-extend-fragments.cc ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /usr/include/clipper/core/cell.h:50, from /usr/include/clipper/core/coords.h:49, from /usr/include/clipper/core/fftmap.h:49, from /usr/include/clipper/core/xmap.h:49, from multi-peptide.hh:30: In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:228:34: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][0]' may be used uninitialized [-Wmaybe-uninitialized] 228 | { return Vec3( m(0,0)*v[0]+m(0,1)*v[1]+m(0,2)*v[2], | ~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][0]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:228:46: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][2]' may be used uninitialized [-Wmaybe-uninitialized] 228 | { return Vec3( m(0,0)*v[0]+m(0,1)*v[1]+m(0,2)*v[2], | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:228:41: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][1]' may be used uninitialized [-Wmaybe-uninitialized] 228 | { return Vec3( m(0,0)*v[0]+m(0,1)*v[1]+m(0,2)*v[2], | ~~~~~~^~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][1]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:230:46: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][2]' may be used uninitialized [-Wmaybe-uninitialized] 230 | m(2,0)*v[0]+m(2,1)*v[1]+m(2,2)*v[2] ); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:229:34: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][0]' may be used uninitialized [-Wmaybe-uninitialized] 229 | m(1,0)*v[0]+m(1,1)*v[1]+m(1,2)*v[2], | ~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][0]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:229:46: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][2]' may be used uninitialized [-Wmaybe-uninitialized] 229 | m(1,0)*v[0]+m(1,1)*v[1]+m(1,2)*v[2], | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:229:41: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][1]' may be used uninitialized [-Wmaybe-uninitialized] 229 | m(1,0)*v[0]+m(1,1)*v[1]+m(1,2)*v[2], | ~~~~~~^~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][1]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:230:41: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][1]' may be used uninitialized [-Wmaybe-uninitialized] 230 | m(2,0)*v[0]+m(2,1)*v[1]+m(2,2)*v[2] ); } | ~~~~~~^~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][1]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:230:34: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][0]' may be used uninitialized [-Wmaybe-uninitialized] 230 | m(2,0)*v[0]+m(2,1)*v[1]+m(2,2)*v[2] ); } | ~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][0]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator+(const Vec3&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:128, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:171:110: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[0]' may be used uninitialized [-Wmaybe-uninitialized] 171 | template inline Vec3 operator +( const Vec3& v1, const Vec3 &v2 ) { return Vec3( v1[0]+v2[0], v1[1]+v2[1], v1[2]+v2[2]); } | ~~~~~^~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[0]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator+(const Vec3&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:128, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:171:123: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[1]' may be used uninitialized [-Wmaybe-uninitialized] 171 | template inline Vec3 operator +( const Vec3& v1, const Vec3 &v2 ) { return Vec3( v1[0]+v2[0], v1[1]+v2[1], v1[2]+v2[2]); } | ~~~~~^~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[1]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator+(const Vec3&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:128, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:171:136: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[2]' may be used uninitialized [-Wmaybe-uninitialized] 171 | template inline Vec3 operator +( const Vec3& v1, const Vec3 &v2 ) { return Vec3( v1[0]+v2[0], v1[1]+v2[1], v1[2]+v2[2]); } | ~~~~~^~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': side-chain-densities.cc:2408:64: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2408 | std::pair mi = s.median_and_iqr(); | ^ multi-peptide.cc: In function 'coot::minimol::fragment coot::multi_build_N_terminal_ALA(mmdb::Residue*, mmdb::Residue*, const std::string&, float, int, const protein_geometry&, const clipper::Xmap&, std::pair, bool)': multi-peptide.cc:701:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 701 | coot::multi_build_N_terminal_ALA(mmdb::Residue *res_p, | ^~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c libres-tracer.cc -fPIC -DPIC -o .libs/libres-tracer.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-rsr-extend-fragments.cc -fPIC -DPIC -o .libs/rama-rsr-extend-fragments.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o new-residue-by-3-phi-psi.lo new-residue-by-3-phi-psi.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c new-residue-by-3-phi-psi.cc -fPIC -DPIC -o .libs/new-residue-by-3-phi-psi.o In file included from identify-protein.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o dSFMT.lo dSFMT.c In file included from ../mini-mol/mini-mol.hh:29, from libres-tracer.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c dSFMT.c -fPIC -DPIC -o .libs/dSFMT.o In file included from ../coot-utils/coot-map-utils.hh:33, from rama-rsr-extend-fragments.cc:28: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from new-residue-by-3-phi-psi.cc:29: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from libres-tracer.cc:46: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libres-tracer.cc: In lambda function: libres-tracer.cc:1932:77: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1932 | return std::make_pair(sum_forward, sum_backward); | ^ side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': side-chain-densities.cc:1293:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~ In file included from rama-rsr-extend-fragments.cc:32: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libres-tracer.cc: In function 'std::vector > make_spin_scored_pairs(const std::vector >&, unsigned int, const clipper::Xmap&, mmdb::Manager*, mmdb::Atom**, int)': libres-tracer.cc:496:67: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 496 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ libres-tracer.cc: In lambda function: libres-tracer.cc:1940:89: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1940 | std::pair score = get_tree_scores(tree); | ^ side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': side-chain-densities.cc:2302:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2302 | coot::side_chain_densities::combine_directory(const std::string &rot_dir, int n_steps, | ^~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/string:51, from /usr/include/c++/14/stdexcept:39, from ../coot-utils/coot-coord-utils.hh:26, from new-residue-by-3-phi-psi.cc:28: In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t<((bool)std::__and_, std::is_move_assignable<_T2> >::value), std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t& coot::new_residue_by_3_phi_psi::connecting_atoms_t::operator=(coot::new_residue_by_3_phi_psi::connecting_atoms_t&&)' at new-residue-by-3-phi-psi.hh:54:13, inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const' at new-residue-by-3-phi-psi.cc:127:80: /usr/include/c++/14/bits/stl_pair.h:938:9: warning: '.coot::new_residue_by_3_phi_psi::connecting_atoms_t::upstream_C.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 938 | second = std::forward(__p.second); | ^~~~~~ new-residue-by-3-phi-psi.cc: In member function 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const': new-residue-by-3-phi-psi.cc:127:80: note: '' declared here 127 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t<((bool)std::__and_, std::is_move_assignable<_T2> >::value), std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t& coot::new_residue_by_3_phi_psi::connecting_atoms_t::operator=(coot::new_residue_by_3_phi_psi::connecting_atoms_t&&)' at new-residue-by-3-phi-psi.hh:54:13, inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const' at new-residue-by-3-phi-psi.cc:127:80: /usr/include/c++/14/bits/stl_pair.h:938:9: warning: '.coot::new_residue_by_3_phi_psi::connecting_atoms_t::downstream_N.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 938 | second = std::forward(__p.second); | ^~~~~~ new-residue-by-3-phi-psi.cc: In member function 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const': new-residue-by-3-phi-psi.cc:127:80: note: '' declared here 127 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-ligand.la -rpath /usr/lib/aarch64-linux-gnu ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo joining-residues.lo ligand-score-card.lo side-chain-densities.lo tube-finder.lo smith-waterman.lo side-chain.lo refine-isolated-chain.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/trace.o .libs/trace-2.o .libs/multi-peptide.o .libs/ligands-db.o .libs/joining-residues.o .libs/ligand-score-card.o .libs/side-chain-densities.o .libs/tube-finder.o .libs/smith-waterman.o .libs/side-chain.o .libs/refine-isolated-chain.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../analysis/.libs/libcoot-analysis.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-ligand.so.0 -o .libs/libcoot-ligand.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-ligand.so.0" && ln -s "libcoot-ligand.so.0.0.0" "libcoot-ligand.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-ligand.so" && ln -s "libcoot-ligand.so.0.0.0" "libcoot-ligand.so") libtool: link: ( cd ".libs" && rm -f "libcoot-ligand.la" && ln -s "../libcoot-ligand.la" "libcoot-ligand.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-findligand-bin find-ligand.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../db-main/libcoot-db-main.la ../cootaneer/libcootaneer.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-findwaters-bin find-waters.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../ccp4mg-utils/libccp4mg-utils.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-make-ligands-db make-ligands-db.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../cootaneer/libcootaneer.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-identify-protein-bin identify-protein.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libres-tracer.cc: In function 'std::vector > make_spin_scored_pairs(const std::vector >&, unsigned int, const clipper::Xmap&, mmdb::Manager*, mmdb::Atom**, int)': libres-tracer.cc:481:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 481 | make_spin_scored_pairs(const std::vector > &atom_pairs_within_distance, | ^~~~~~~~~~~~~~~~~~~~~~ libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-identify-protein-bin identify-protein.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-findwaters-bin find-waters.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-make-ligands-db make-ligands-db.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../cootaneer/.libs/libcootaneer.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-findligand-bin find-ligand.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../db-main/.libs/libcoot-db-main.so ../cootaneer/.libs/libcootaneer.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-res-tracer.la -rpath /usr/lib/aarch64-linux-gnu libres-tracer.lo rama-rsr-extend-fragments.lo new-residue-by-3-phi-psi.lo dSFMT.lo libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libres-tracer.o .libs/rama-rsr-extend-fragments.o .libs/new-residue-by-3-phi-psi.o .libs/dSFMT.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-res-tracer.so.0 -o .libs/libcoot-res-tracer.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-res-tracer.so.0" && ln -s "libcoot-res-tracer.so.0.0.0" "libcoot-res-tracer.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-res-tracer.so" && ln -s "libcoot-res-tracer.so.0.0.0" "libcoot-res-tracer.so") libtool: link: ( cd ".libs" && rm -f "libcoot-res-tracer.la" && ln -s "../libcoot-res-tracer.la" "libcoot-res-tracer.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' Making all in coords make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Bond_lines.lo Bond_lines.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 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-DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phenix-geo-bonds.cc -fPIC -DPIC -o .libs/phenix-geo-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Bond_lines_ext.cc -fPIC -DPIC -o .libs/Bond_lines_ext.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmdb-extras.cc -fPIC -DPIC -o .libs/mmdb-extras.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cos-sin.cc -fPIC -DPIC -o .libs/cos-sin.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c utils.cc -fPIC -DPIC -o .libs/utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-close.cc -fPIC -DPIC -o .libs/coot-close.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmdb.cc -fPIC -DPIC -o .libs/mmdb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer-markup.cc -fPIC -DPIC -o .libs/rotamer-markup.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmdb-crystal.cc -fPIC -DPIC -o .libs/mmdb-crystal.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phenix-geo.cc -fPIC -DPIC -o .libs/phenix-geo.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o loop-path.lo loop-path.cc In file included from phenix-geo.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c loop-path.cc -fPIC -DPIC -o .libs/loop-path.o In file included from rotamer-markup.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-plot-phi-psi.lo rama-plot-phi-psi.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi-prob.lo phi-psi-prob.cc In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from phenix-geo-bonds.cc:25: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from Bond_lines.cc:36: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from Bond_lines.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from mmdb-crystal.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o In file included from mmdb-crystal.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi-prob.cc -fPIC -DPIC -o .libs/phi-psi-prob.o In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from mmdb-extras.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ramachandran-validation.lo ramachandran-validation.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ramachandran-validation.cc -fPIC -DPIC -o .libs/ramachandran-validation.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from mmdb.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from mmdb.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coords.la -rpath /usr/lib/aarch64-linux-gnu Bond_lines.lo Cartesian.lo cos-sin.lo phenix-geo-bonds.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo rotamer-markup.lo loop-path.lo rama-plot-phi-psi.lo phi-psi-prob.lo ramachandran-validation.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../cootaneer/libcootaneer.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/phenix-geo-bonds.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/phenix-geo.o .libs/rotamer-markup.o .libs/loop-path.o .libs/rama-plot-phi-psi.o .libs/phi-psi-prob.o .libs/ramachandran-validation.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../ligand/.libs/libcoot-ligand.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../cootaneer/.libs/libcootaneer.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-coords.so.0 -o .libs/libcoot-coords.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-coords.so.0" && ln -s "libcoot-coords.so.0.0.0" "libcoot-coords.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coords.so" && ln -s "libcoot-coords.so.0.0.0" "libcoot-coords.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coords.la" && ln -s "../libcoot-coords.la" "libcoot-coords.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' Making all in density-contour make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Vectors.lo Vectors.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CIsoSurface.lo CIsoSurface.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gaussian-surface.lo gaussian-surface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CIsoSurface.cpp -fPIC -DPIC -o .libs/CIsoSurface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Vectors.cpp -fPIC -DPIC -o .libs/Vectors.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c occlusion.cc -fPIC -DPIC -o .libs/occlusion.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c density-contour-triangles.cc -fPIC -DPIC -o .libs/density-contour-triangles.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gaussian-surface.cc -fPIC -DPIC -o .libs/gaussian-surface.o In file included from ../coot-utils/coot-map-utils.hh:33, from density-contour-triangles.cc:155: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from CIsoSurface.cpp:1244: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from gaussian-surface.cc:36: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ CIsoSurface.cpp: In member function 'coot::CartesianPairInfo CIsoSurface::GenerateSurface_from_NXmap(const clipper::NXmap&, T, float, coot::Cartesian, int) [with T = float]': CIsoSurface.cpp:786:24: warning: 'grid_min' may be used uninitialized [-Wmaybe-uninitialized] 786 | clipper::Grid_range grid(grid_min, grid_max); | ^~~~ In file included from ../coords/Cartesian.h:31, from CIsoSurface.h:44, from CIsoSurface.cpp:55: /usr/include/clipper/core/coords.h:590:5: note: by argument 2 of type 'const clipper::Coord_grid&' to 'clipper::Grid_range::Grid_range(const clipper::Coord_grid&, const clipper::Coord_grid&)' declared here 590 | Grid_range( const Coord_grid& min, const Coord_grid& max ); | ^~~~~~~~~~ CIsoSurface.cpp:784:24: note: 'grid_min' declared here 784 | clipper::Coord_grid grid_min; | ^~~~~~~~ CIsoSurface.cpp:786:24: warning: 'grid_max' may be used uninitialized [-Wmaybe-uninitialized] 786 | clipper::Grid_range grid(grid_min, grid_max); | ^~~~ /usr/include/clipper/core/coords.h:590:5: note: by argument 3 of type 'const clipper::Coord_grid&' to 'clipper::Grid_range::Grid_range(const clipper::Coord_grid&, const clipper::Coord_grid&)' declared here 590 | Grid_range( const Coord_grid& min, const Coord_grid& max ); | ^~~~~~~~~~ CIsoSurface.cpp:785:24: note: 'grid_max' declared here 785 | clipper::Coord_grid grid_max; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-isosurface.la -rpath /usr/lib/aarch64-linux-gnu Vectors.lo CIsoSurface.lo density-contour-triangles.lo occlusion.lo gaussian-surface.lo ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o .libs/occlusion.o .libs/gaussian-surface.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs ../coords/.libs/libcoot-coords.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib 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'/build/reproducible-path/coot-1.1.09+dfsg/skeleton' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dm-utils.lo dm-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphical_skel.lo graphical_skel.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o BuildCas.lo BuildCas.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dm-utils.cc -fPIC -DPIC -o .libs/dm-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphical_skel.cc -fPIC -DPIC -o .libs/graphical_skel.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BuildCas.cc -fPIC -DPIC -o .libs/BuildCas.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-skeleton.la -rpath /usr/lib/aarch64-linux-gnu dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/angles/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs ../angles/.libs/libcoot-AngleInfo.so ../ideal/.libs/libcoot-ideal.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-skeleton.so.0 -o .libs/libcoot-skeleton.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-skeleton.so.0" && ln -s "libcoot-skeleton.so.0.0.0" "libcoot-skeleton.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-skeleton.so" && ln -s "libcoot-skeleton.so.0.0.0" "libcoot-skeleton.so") libtool: link: ( cd ".libs" && rm -f "libcoot-skeleton.la" && ln -s "../libcoot-skeleton.la" "libcoot-skeleton.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' Making all in high-res make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" 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-DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o residue-distortions.lo residue-distortions.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sequence-assignment.lo sequence-assignment.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-distortions.cc -fPIC -DPIC -o .libs/residue-distortions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c high-res.cc -fPIC -DPIC -o .libs/high-res.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-atom-graph.cc -fPIC -DPIC -o .libs/coot-atom-graph.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-assignment.cc -fPIC -DPIC -o .libs/sequence-assignment.o In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from residue-distortions.cc:21: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from coot-atom-graph.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from sequence-assignment.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from high-res.cc:24: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from high-res.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-high-res.la -rpath /usr/lib/aarch64-linux-gnu high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o 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'/build/reproducible-path/coot-1.1.09+dfsg/build' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall 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-s "../libcoot-cabuild.la" "libcoot-cabuild.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/build' Making all in MoleculesToTriangles make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making all in CXXSurface make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSurface.lo CXXSurface.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSurfaceVertex.lo CXXSurfaceVertex.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXTorusElement.lo CXXTorusElement.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCircleNode.cpp -fPIC -DPIC -o .libs/CXXCircleNode.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXNewHood.cpp -fPIC -DPIC -o .libs/CXXNewHood.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCoord.cpp -fPIC -DPIC -o .libs/CXXCoord.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereTriangleEdge.cpp -fPIC -DPIC -o .libs/CXXSphereTriangleEdge.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXFortranFile.cpp -fPIC -DPIC -o .libs/CXXFortranFile.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCircle.cpp -fPIC -DPIC -o .libs/CXXCircle.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereTriangle.cpp -fPIC -DPIC -o .libs/CXXSphereTriangle.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereElement.cpp -fPIC -DPIC -o .libs/CXXSphereElement.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurface.cpp -fPIC -DPIC -o .libs/CXXSurface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereNode.cpp -fPIC -DPIC -o .libs/CXXSphereNode.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurfaceVertex.cpp -fPIC -DPIC -o .libs/CXXSurfaceVertex.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXTorusElement.cpp -fPIC -DPIC -o .libs/CXXTorusElement.o In file included from CXXSurfaceVertex.h:26, from CXXCircleNode.cpp:24: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSphereNode.h:30, from CXXSphereNode.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXCircle.cpp:26: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSphereTriangle.h:28, from CXXSphereTriangle.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXNewHood.cpp:27: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXCoord.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXSphereElement.cpp:26: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ In file included from CXXSurfaceVertex.h:26, from CXXTriangle.h:27, from CXXSurface.h:39, from CXXSurface.cpp:29: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXTorusElement.cpp:26: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXTorusNode.lo CXXTorusNode.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXTriangle.lo CXXTriangle.cpp CXXCircleNode.cpp: In static member function 'static int CXXCircleNode::probeContacts(std::vector&, double, std::map >&)': CXXCircleNode.cpp:176:59: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<__gnu_cxx::__normal_iterator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 176 | for (int iCentralProbe = 0; iCentralProbe < centralBin.size(); iCentralProbe++){ | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ CXXFortranFile.cpp: In member function 'size_t CXXFortranFile::getFortranData(char*, size_t, size_t, int)': CXXFortranFile.cpp:192:20: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 192 | for (int i=0; i() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' CXXSurface.cpp: In member function 'int CXXSurface::readGraspFile(std::string)': CXXSurface.cpp:155:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 155 | for (int i=0; i&, mmdb::Manager*, int)': CXXSurface.cpp:497:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 497 | for (int i=0; i< nVerts; i++){ | ~^~~~~~~~ CXXSurface.cpp: In member function 'size_t CXXSurface::updateWithVectorData(size_t, std::string, size_t, double*)': CXXSurface.cpp:585:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 585 | if (int(vertices.size()) < start + count){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ CXXSurface.cpp: In member function 'size_t CXXSurface::updateWithPointerData(size_t, std::string, size_t, void**)': CXXSurface.cpp:599:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 599 | if (int(vertices.size()) < start + count){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ CXXSurface.cpp: In member function 'size_t CXXSurface::setCoord(const std::string&, size_t, const CXXCoord&)': CXXSurface.cpp:817:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 817 | if (int(vertices.size()) <= iVertex){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ CXXSurface.cpp: In member function 'int CXXSurface::getCoord(size_t, size_t, double*)': CXXSurface.cpp:950:14: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] 950 | if (type <= int(vectors.size())){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from CXXSurfaceVertex.h:26, from CXXSurfaceVertex.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXSurface.cpp: In member function 'void CXXSurface::compress(double)': CXXSurface.cpp:1013:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1013 | for (int i=0; i' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' CXXSurface.cpp:1015:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1015 | for (int j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1031 | for (int i=0; i&)': CXXSphereElement.cpp:673:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 673 | for (int i=0; i() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXQADSurfaceStaticData.cpp -fPIC -DPIC -o .libs/CXXQADSurfaceStaticData.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXFFTSolventMap.lo CXXFFTSolventMap.cpp In file included from CXXTorusNode.h:27, from CXXTorusNode.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCreator.cpp -fPIC -DPIC -o .libs/CXXCreator.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSpace.cpp -fPIC -DPIC -o .libs/CXXSpace.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXChargeTable.lo CXXChargeTable.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXException.lo CXXException.cpp CXXCreator.cpp:803:2: warning: #warning Compiling for OMP [-Wcpp] 803 | #warning Compiling for OMP | ^~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXFFTSolventMap.cpp -fPIC -DPIC -o .libs/CXXFFTSolventMap.o In file included from CXXSurfaceVertex.h:26, from CXXQADSurfaceStaticData.cpp:24: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXUtils.lo CXXUtils.cpp In file included from CXXSurfaceVertex.h:26, from CXXQADSurface.cpp:24: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXBall.lo CXXBall.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSurfaceMaker.lo CXXSurfaceMaker.cpp In file included from CXXCreator.h:41, from CXXCreator.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSpace.h:25, from CXXSpace.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXChargeTable.cpp -fPIC -DPIC -o .libs/CXXChargeTable.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXException.cpp -fPIC -DPIC -o .libs/CXXException.o CXXSpace.cpp: In constructor 'CXXSpace::CXXSpace(float, float, float, float, float, float, float, float)': CXXSpace.cpp:51:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 51 | if (chargeGrid == 0 | potentialGrid == 0 | dielGrid == 0) { | ~~~~~~~~~~~^~~~ CXXSpace.cpp:51:104: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 51 | if (chargeGrid == 0 | potentialGrid == 0 | dielGrid == 0) { | ~~~~~~~~~^~~~ CXXSpace.cpp: In member function 'double CXXSpace::getGridCharge(int, int, int)': CXXSpace.cpp:184:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:184:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:184:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:184:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:184:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getGridSolvationParameter(int, int, int)': CXXSpace.cpp:203:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:203:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:203:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:203:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:203:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getEpsilonKappaSq(int, int, int)': CXXSpace.cpp:222:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:222:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:222:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:222:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:222:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getPotential(int, int, int)': CXXSpace.cpp:240:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:240:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:240:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:240:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:240:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getBoundaryMap(int, int, int)': CXXSpace.cpp:261:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:261:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:261:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:261:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:261:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'int CXXSpace::dumpSpaceSlice(int, int, int)': CXXSpace.cpp:507:23: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 507 | if (dimension > 2 | dimension < 0) { | ~~~~~~~~~~^~~ CXXSpace.cpp:531:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 531 | if (j == (dim[1]-1)) | ^~ CXXSpace.cpp:533:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 533 | break; | ^~~~~ CXXSpace.cpp:538:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 538 | if (j == (dim[1]-1)) | ^~ CXXSpace.cpp:541:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 541 | break; | ^~~~~ CXXSpace.cpp:578:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 578 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:581:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 581 | break; | ^~~~~ CXXSpace.cpp:586:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 586 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:590:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 590 | break; | ^~~~~ CXXSpace.cpp:620:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 620 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:623:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 623 | break; | ^~~~~ CXXSpace.cpp:628:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 628 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:631:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 631 | break; | ^~~~~ CXXFFTSolventMap.cpp: In constructor 'SolventMap::SolventMap(fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real)': CXXFFTSolventMap.cpp:32:25: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 32 | if (probeRadius < 0 | gridSpacing < 0) { | ~~~~~~~~~~~~^~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXUtils.cpp -fPIC -DPIC -o .libs/CXXUtils.o CXXFFTSolventMap.cpp: In member function 'int SolventMap::convoluteSolidProbe(fftw_real, int, int, float)': CXXFFTSolventMap.cpp:361:22: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { | ~~~~~~~~~^~~~ CXXFFTSolventMap.cpp:361:59: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { | ~~~~~~~~~~~~~~~^~~~ CXXFFTSolventMap.cpp:361:72: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { | ~~~~~~^~~~ CXXFFTSolventMap.cpp: In member function 'int SolventMap::dumpXSlice(int, int, int)': CXXFFTSolventMap.cpp:743:21: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 743 | if (SliceNr > dim[0] | SliceNr < 1) { | ~~~~~~~~^~~~~~~~ CXXCreator.cpp: In member function 'int CXXCreator::distributeAtomCharge(CXXCoord, CXXCoord, CXXCoord, CXXCoord, int)': CXXCreator.cpp:261:28: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:261:78: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:289:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 289 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~~ CXXCreator.cpp:289:38: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 289 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~ CXXCreator.cpp:311:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 311 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:311:68: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 311 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp: In member function 'double CXXCreator::getGridVolumeOfAtom(CXXCoord, CXXCoord, CXXCoord, CXXCoord, int)': CXXCreator.cpp:389:28: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 389 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:389:78: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 389 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:414:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 414 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~~ CXXCreator.cpp:414:38: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 414 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~ CXXCreator.cpp:433:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 433 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:433:68: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 433 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp: In member function 'int CXXCreator::evolve(int, double)': CXXCreator.cpp:789:34: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 789 | for (size_t i = 0; i < space->getDimI(); i++) { | ~~^~~~~~~~~~~~~~~~~~ CXXCreator.cpp:793:35: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 793 | for (size_t j=0; jgetDimJ(); j++) largestChangeOfRow[j]=-1e30; | ~^~~~~~~~~~~~~~~~~ CXXCreator.cpp:796:35: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 796 | for (size_t j=0; jgetDimJ(); j++) largestPotentialOfRow[j]=-1e30; | ~^~~~~~~~~~~~~~~~~ CXXCreator.cpp:804:38: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 804 | for (size_t j = 0; j < passableSpace->getDimJ(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:809:42: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 809 | for (size_t k = 0; k < passableSpace->getDimK(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:812:41: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 812 | if (((i+j+k)%2) == (n%2)) { | ~~~~~~~~~~~~^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXBall.cpp -fPIC -DPIC -o .libs/CXXBall.o CXXQADSurface.cpp: In member function 'int CXXQADSurface::contourMap(double)': CXXQADSurface.cpp:599:75: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 599 | iCompare >=compareStart && !iEquivalent; | ~~~~~~~~~^~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurfaceMaker.cpp -fPIC -DPIC -o .libs/CXXSurfaceMaker.o CXXBall.cpp:87:2: warning: #warning Compiling for OMP [-Wcpp] 87 | #warning Compiling for OMP | ^~~~~~~ CXXBall.cpp:157:2: warning: #warning Compiling for OMP [-Wcpp] 157 | #warning Compiling for OMP | ^~~~~~~ CXXSurfaceMaker.cpp:431:2: warning: #warning Compiling for OMP [-Wcpp] 431 | #warning Compiling for OMP | ^~~~~~~ CXXSurfaceMaker.cpp:569:2: warning: #warning Compiling for OMP [-Wcpp] 569 | #warning Compiling for OMP | ^~~~~~~ In file included from CXXSurfaceVertex.h:26, from CXXBall.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXSurfaceMaker.cpp:31: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' CXXBall.cpp: In static member function 'static int CXXBall::triangulateBalls(std::vector&, std::vector&, double, CXXSurfaceMaker*, int)': CXXBall.cpp:88:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 88 | for (int i=0; i< nBalls; i++){ | ~^~~~~~~~ CXXBall.cpp:93:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 93 | if (!(i%100) || i==nBalls-1) { | ~^~~~~~~~~~ CXXBall.cpp:129:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 129 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 160 | for (int i=0; i&, std::vector&, std::map >&)': CXXBall.cpp:295:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 295 | for (int iBall=0; iBall< balls.size(); iBall++){ | ~~~~~^~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'int CXXSurfaceMaker::calculateVDWFromAtoms(mmdb::Manager*, int, int, double, double, double, bool)': CXXSurfaceMaker.cpp:193:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 193 | for (int i = 0; i < vdwBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:196:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 196 | delete static_cast(vdwBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:198:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 198 | for (int i = 0; i < contextBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:204:17: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 204 | delete static_cast(contextBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'int CXXSurfaceMaker::calculateAccessibleFromAtoms(mmdb::Manager*, int, int, double, double, double, bool)': CXXSurfaceMaker.cpp:255:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 255 | for (int i = 0; i < vdwBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:258:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 258 | delete static_cast(vdwBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:260:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 260 | for (int i = 0; i < contextBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:266:17: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 266 | delete static_cast(contextBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'int CXXSurfaceMaker::calculateFromAtoms(mmdb::Manager*, int, int, double, double, double, bool)': CXXSurfaceMaker.cpp:509:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 509 | for (int i = 0; i < vdwBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:512:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 512 | delete static_cast(vdwBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:514:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 514 | for (int i = 0; i < contextBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:517:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 517 | delete static_cast(contextBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:520:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 520 | for (int i = 0; i < reentrantProbes.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:522:9: warning: deleting object of polymorphic class type 'CXXReentrantProbeBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 522 | delete static_cast(reentrantProbes[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'SurfaceParameters CXXSurfaceMaker::measuredProperties()': CXXSurfaceMaker.cpp:571:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 571 | for (int iChildSurface = 0; iChildSurface < childSurfaces.size(); iChildSurface++) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libMoleculesToTrianglesCXXSurface.la -rpath /usr/lib/aarch64-linux-gnu CXXCircle.lo CXXCircleNode.lo CXXCoord.lo CXXFortranFile.lo CXXNewHood.lo CXXSphereElement.lo CXXSphereNode.lo CXXSphereTriangle.lo CXXSphereTriangleEdge.lo CXXSurface.lo CXXSurfaceVertex.lo CXXTorusElement.lo CXXTorusNode.lo CXXTriangle.lo CXXQADSurface.lo CXXQADSurfaceStaticData.lo CXXCreator.lo CXXSpace.lo CXXFFTSolventMap.lo CXXChargeTable.lo CXXException.lo CXXUtils.lo CXXBall.lo CXXSurfaceMaker.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsrfftw -lsfftw -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/CXXCircle.o .libs/CXXCircleNode.o .libs/CXXCoord.o .libs/CXXFortranFile.o .libs/CXXNewHood.o .libs/CXXSphereElement.o .libs/CXXSphereNode.o .libs/CXXSphereTriangle.o .libs/CXXSphereTriangleEdge.o .libs/CXXSurface.o .libs/CXXSurfaceVertex.o .libs/CXXTorusElement.o .libs/CXXTorusNode.o .libs/CXXTriangle.o .libs/CXXQADSurface.o .libs/CXXQADSurfaceStaticData.o .libs/CXXCreator.o .libs/CXXSpace.o .libs/CXXFFTSolventMap.o .libs/CXXChargeTable.o .libs/CXXException.o .libs/CXXUtils.o .libs/CXXBall.o .libs/CXXSurfaceMaker.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lsrfftw -lsfftw -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXSurface.so.0 -o .libs/libMoleculesToTrianglesCXXSurface.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.so.0" && ln -s "libMoleculesToTrianglesCXXSurface.so.0.0.0" "libMoleculesToTrianglesCXXSurface.so.0") libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.so" && ln -s "libMoleculesToTrianglesCXXSurface.so.0.0.0" "libMoleculesToTrianglesCXXSurface.so") libtool: link: ( cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.la" && ln -s "../libMoleculesToTrianglesCXXSurface.la" "libMoleculesToTrianglesCXXSurface.la" ) make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' Making all in CXXClasses make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo `test -f 'AtomPropertyRampColorRule.cpp' || echo './'`AtomPropertyRampColorRule.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. 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-I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Representation.lo `test -f 'Representation.cpp' || echo './'`Representation.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" 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libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo `test -f 'BoxSectionPrimitive.cpp' || echo './'`BoxSectionPrimitive.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection 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-I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AtomPropertyRampColorRule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXMatrix.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BallsPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BondsPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c RepresentationInstance.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Light.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DisplayPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c RotatedTranslatedScaledEntity.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DiscreteSegment.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BoxSectionPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o In file included from DisplayPrimitive.h:32, from Representation.h:36, from Representation.cpp:33: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from ColorRule.h:29, from AtomPropertyRampColorRule.h:27, from AtomPropertyRampColorRule.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from RotatedTranslatedScaledEntity.h:28, from RotatedTranslatedScaledEntity.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from PositionedEntity.h:28, from DirectedPositionedEntity.h:28, from DirectedPositionedEntity.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from RotatedTranslatedScaledEntity.h:28, from Light.h:29, from Light.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from RotatedTranslatedScaledEntity.h:28, from RepresentationInstance.h:32, from RepresentationInstance.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from BallsPrimitive.h:33, from BallsPrimitive.cpp:28: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from CXXMatrix.h:28, from CXXMatrix.cpp:24: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from BondsPrimitive.h:28, from BondsPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from DisplayPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from NRStuff.h:31, from DiscreteSegment.h:26, from DiscreteSegment.cpp:26: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from CylindersPrimitive.h:29, from BoxSectionPrimitive.h:31, from BoxSectionPrimitive.cpp:32: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo `test -f 'MolecularRepresentation.cpp' || echo './'`MolecularRepresentation.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo `test -f 'SecondaryColorScheme.cpp' || echo './'`SecondaryColorScheme.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo `test -f 'MyMolecule.cpp' || echo './'`MyMolecule.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo `test -f 'SolidColorRule.cpp' || echo './'`SolidColorRule.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' DiscreteSegment.cpp: In member function 'void DiscreteSegment::evaluateNormals()': DiscreteSegment.cpp:44:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 44 | for (int i=1; i<(calphas.size()-1); i++){ | ~^~~~~~~~~~~~~~~~~~~ DiscreteSegment.cpp: In member function 'void DiscreteSegment::smoothBetas()': DiscreteSegment.cpp:83:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 83 | for (int iCalpha=0; iCalpha::size_type' {aka 'long unsigned int'} [-Wsign-compare] 88 | && iCalpha+nInStrand < calphas.size()){ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ DiscreteSegment.cpp:98:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 98 | if (iCalpha+nInStrand < calphas.size()){ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ BoxSectionPrimitive.cpp: In member function 'virtual void BoxSectionPrimitive::generateArrays()': BoxSectionPrimitive.cpp:72:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 72 | for (int i=0; i< points.size(); i++){ | ~^~~~~~~~~~~~~~~ DiscreteSegment.cpp: In member function 'void DiscreteSegment::evaluateSplines()': DiscreteSegment.cpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 135 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 105 | for (int i=0; i< points.size()-1; i++){ | ~^~~~~~~~~~~~~~~~~ In file included from oglPolyhedron.h:29, from SpherePrimitive.h:30, from Representation.cpp:36: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from oglPolyhedron.h:29, from BallsPrimitive.cpp:30: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ BallsPrimitive.cpp: In member function 'virtual void BallsPrimitive::generateArrays()': BallsPrimitive.cpp:96:39: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 96 | for (int iVertex = 0; iVertex < ((Polyhedron *)poly)->nVertices(); iVertex++){ | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BallsPrimitive.cpp:110:35: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 110 | for (int iFace = 0; iFace < ((Polyhedron *)poly)->nFaces(); iFace++){ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MolecularRepresentation.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-ColorRule.lo `test -f 'ColorRule.cpp' || echo './'`ColorRule.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SolidColorRule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SecondaryColorScheme.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MyMolecule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-NRStuff.lo `test -f 'NRStuff.cpp' || echo './'`NRStuff.cpp In file included from MyMolecule.h:28, from MolecularRepresentation.h:32, from MolecularRepresentation.cpp:27: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo `test -f 'SpherePrimitive.cpp' || echo './'`SpherePrimitive.cpp In file included from ColorRule.h:29, from SolidColorRule.h:27, from SolidColorRule.cpp:26: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo `test -f 'ColorScheme.cpp' || echo './'`ColorScheme.cpp In file included from ColorRule.h:29, from ColorScheme.h:32, from SecondaryColorScheme.h:29, from SecondaryColorScheme.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from MyMolecule.h:28, from MyMolecule.cpp:27: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo `test -f 'Polyhedron.cpp' || echo './'`Polyhedron.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ColorRule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo `test -f 'SticksPrimitive.cpp' || echo './'`SticksPrimitive.cpp In file included from ColorRule.h:29, from ColorRule.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c NRStuff.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SpherePrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ColorScheme.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o In file included from NRStuff.h:31, from NRStuff.cpp:29: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo `test -f 'CompoundSelection.cpp' || echo './'`CompoundSelection.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo `test -f 'PositionedEntity.cpp' || echo './'`PositionedEntity.cpp In file included from DisplayPrimitive.h:32, from SpherePrimitive.h:29, from SpherePrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Polyhedron.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o In file included from MolecularRepresentation.cpp:28: DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from oglPolyhedron.h:29, from SpherePrimitive.h:30, from MolecularRepresentation.cpp:29: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ColorScheme.h:95:23: warning: 'virtual FCXXCoord ColorScheme::colorForAtom(const mmdb::Atom*, std::map, int>&)' was hidden [-Woverloaded-virtual=] 95 | virtual FCXXCoord colorForAtom(const mmdb::Atom* atom, std::map, int> &handles){ | ^~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SticksPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o SecondaryColorScheme.h:52:23: note: by 'virtual FCXXCoord SecondaryColorScheme::colorForAtom(mmdb::Atom*)' 52 | virtual FCXXCoord colorForAtom(mmdb::Atom* atom){ | ^~~~~~~~~~~~ In file included from MyMolecule.cpp:36: DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 542 | for (int iSegment = 0; iSegment < segments.size(); iSegment++){ | ~~~~~~~~~^~~~~~~~~~~~~~~~~ MolecularRepresentation.cpp: In member function 'int MolecularRepresentation::drawCalphas()': MolecularRepresentation.cpp:740:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 740 | for (int iSegment = 0; iSegment < segments.size(); iSegment++){ | ~~~~~~~~~^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c PositionedEntity.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo `test -f 'CylinderPoint.cpp' || echo './'`CylinderPoint.cpp In file included from MyMolecule.h:28, from CompoundSelection.h:35, from CompoundSelection.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SurfacePrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Renderer.lo `test -f 'Renderer.cpp' || echo './'`Renderer.cpp In file included from PositionedEntity.h:28, from PositionedEntity.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from SurfacePrimitive.h:28, from SurfacePrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from oglPolyhedron.h:29, from SpherePrimitive.h:30: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CylinderPoint.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Renderer.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o In file included from CylinderPoint.h:29, from CylinderPoint.cpp:28: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ColorScheme.cpp: In static member function 'static std::shared_ptr ColorScheme::colorRampChainsScheme()': ColorScheme.cpp:61:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 61 | for (int i=0; i() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo `test -f 'VertexColorNormalPrimitive.cpp' || echo './'`VertexColorNormalPrimitive.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo `test -f 'CylindersPrimitive.cpp' || echo './'`CylindersPrimitive.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo `test -f 'oglPolyhedron.cpp' || echo './'`oglPolyhedron.cpp CompoundSelection.cpp: In destructor 'CompoundSelection::~CompoundSelection()': CompoundSelection.cpp:36:13: warning: deleting object of polymorphic class type 'CompoundSelection' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 36 | delete p; | ^~~~~~~~ CompoundSelection.cpp:39:13: warning: deleting object of polymorphic class type 'MMDBStringPrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 39 | delete p; | ^~~~~~~~ CompoundSelection.cpp:42:13: warning: deleting object of polymorphic class type 'MMDBSecondaryTypePrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 42 | delete p; | ^~~~~~~~ CompoundSelection.cpp:45:13: warning: deleting object of polymorphic class type 'MMDBSubsetTypePrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 45 | delete p; | ^~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo `test -f 'MolecularRepresentationInstance.cpp' || echo './'`MolecularRepresentationInstance.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c VertexColorNormalPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CylindersPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c oglPolyhedron.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from VertexColorNormalPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from Polyhedron.h:32, from oglPolyhedron.h:29, from oglPolyhedron.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Quaternion.lo `test -f 'Quaternion.cpp' || echo './'`Quaternion.cpp In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from CylindersPrimitive.h:29, from CylindersPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd SurfacePrimitive.cpp: In member function 'virtual void SurfacePrimitive::generateArrays()': SurfacePrimitive.cpp:100:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 100 | for (int i=0; i< childSurface.numberOfTriangles(); i++){ | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SurfacePrimitive.cpp: In constructor 'SurfacePrimitive::SurfacePrimitive(mmdb::Manager*, int, int, std::shared_ptr, SurfaceType, float, float)': SurfacePrimitive.cpp:145:42: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 145 | for (int iVertex = 0; iVertex() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ oglPolyhedron.cpp: In member function 'virtual void oglPolyhedron::generateArrays()': oglPolyhedron.cpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 48 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 63 | for (int i=0; i() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' CylindersPrimitive.cpp: In member function 'virtual void CylindersPrimitive::generateArrays()': CylindersPrimitive.cpp:85:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 85 | for (int i=0; i< points.size(); i++){ | ~^~~~~~~~~~~~~~~ CylindersPrimitive.cpp:113:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 113 | for (int i=0; i< points.size()-1; i++){ | ~^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Vector2.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Vector3.lo `test -f 'Vector3.cpp' || echo './'`Vector3.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o libMoleculesToTrianglesCXXClasses_la-lfit.lo `test -f 'lfit.c' || echo './'`lfit.c libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Vector3.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DishyBase.lo `test -f 'DishyBase.cpp' || echo './'`DishyBase.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo `test -f 'FlatFanPrimitive.cpp' || echo './'`FlatFanPrimitive.cpp libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c lfit.c -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DishyBase.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c FlatFanPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o In file included from DishyBase.h:31, from DishyBase.cpp:23: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from FlatFanPrimitive.h:29, from FlatFanPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' MyMolecule.cpp: In member function 'int MyMolecule::loadCoords(char*, int)': MyMolecule.cpp:92:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 8 bytes from a string of length 225 [-Wstringop-truncation] 92 | strncpy (field, tokenBuffer+30, 8); | ^ MyMolecule.cpp:94:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 8 bytes from a string of length 217 [-Wstringop-truncation] 94 | strncpy (field, tokenBuffer+38, 8); | ^ MyMolecule.cpp:96:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 8 bytes from a string of length 209 [-Wstringop-truncation] 96 | strncpy (field, tokenBuffer+46, 8); | ^ MyMolecule.cpp:99:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 6 bytes from a string of length 201 [-Wstringop-truncation] 99 | strncpy (field, tokenBuffer+54, 6); | ^ MyMolecule.cpp:101:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 6 bytes from a string of length 195 [-Wstringop-truncation] 101 | strncpy (field, tokenBuffer+60, 6); | ^ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libMoleculesToTrianglesCXXClasses.la -rpath /usr/lib/aarch64-linux-gnu libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-Representation.lo libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo libMoleculesToTrianglesCXXClasses_la-Light.lo libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo libMoleculesToTrianglesCXXClasses_la-ColorRule.lo libMoleculesToTrianglesCXXClasses_la-NRStuff.lo libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo libMoleculesToTrianglesCXXClasses_la-Renderer.lo libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-Quaternion.lo libMoleculesToTrianglesCXXClasses_la-Vector2.lo libMoleculesToTrianglesCXXClasses_la-Vector3.lo libMoleculesToTrianglesCXXClasses_la-lfit.lo libMoleculesToTrianglesCXXClasses_la-DishyBase.lo libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo ../../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o .libs/libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/.libs -L/usr/lib/aarch64-linux-gnu ../../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXClasses.so.0 -o .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.so.0" && ln -s "libMoleculesToTrianglesCXXClasses.so.0.0.0" "libMoleculesToTrianglesCXXClasses.so.0") libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.so" && ln -s "libMoleculesToTrianglesCXXClasses.so.0.0.0" "libMoleculesToTrianglesCXXClasses.so") libtool: link: ( cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.la" && ln -s "../libMoleculesToTrianglesCXXClasses.la" "libMoleculesToTrianglesCXXClasses.la" ) make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making all in pli make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-ligand-interactions.lo protein-ligand-interactions.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flev-annotations.lo flev-annotations.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pi-stacking.lo pi-stacking.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sdf-interface.lo sdf-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pi-stacking.cc -fPIC -DPIC -o .libs/pi-stacking.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sdf-interface.cc -fPIC -DPIC -o .libs/sdf-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-ligand-interactions.cc -fPIC -DPIC -o .libs/protein-ligand-interactions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flev-annotations.cc -fPIC -DPIC -o .libs/flev-annotations.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from pi-stacking.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from sdf-interface-for-export.hh:31, from sdf-interface.cc:49: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from sdf-interface.cc:147: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from sdf-interface.cc:37: In constructor 'constexpr std::pair<_T1, _T2>::pair(_U1&&, _U2&&) [with _U1 = bool; _U2 = clipper::Coord_orth&; typename std::enable_if<(std::_PCC::_MoveConstructiblePair<_U1, _U2>() && std::_PCC::_ImplicitlyMoveConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)' at sdf-interface.cc:419:56: /usr/include/c++/14/bits/stl_pair.h:882:42: warning: 'v' may be used uninitialized [-Wmaybe-uninitialized] 882 | : first(std::forward<_U1>(__x)), second(std::forward<_U2>(__y)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sdf-interface.cc: In function 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)': sdf-interface.cc:409:24: note: 'v' declared here 409 | clipper::Coord_orth v; | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-pli.la -rpath /usr/lib/aarch64-linux-gnu protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo sdf-interface.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral 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-fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-pli.so.0 -o .libs/libcoot-pli.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-pli.so.0" && ln -s "libcoot-pli.so.0.0.0" "libcoot-pli.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-pli.so" && ln -s "libcoot-pli.so.0.0.0" "libcoot-pli.so") libtool: link: ( cd ".libs" && rm -f "libcoot-pli.la" && ln -s "../libcoot-pli.la" "libcoot-pli.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' Making all in greg-tests make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' Making all in python-tests make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' Making all in cootilus make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. 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-DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cootilus-build.lo cootilus-build.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-ss-find.cpp -fPIC -DPIC -o .libs/nautilus-ss-find.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-target.cpp -fPIC -DPIC -o .libs/nautilus-target.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-tools.cpp -fPIC -DPIC -o .libs/nautilus-tools.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cootilus-build.cpp -fPIC -DPIC -o .libs/cootilus-build.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nucleicacid_db.cpp -fPIC -DPIC -o .libs/nucleicacid_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-join.cpp -fPIC -DPIC -o .libs/nautilus-join.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootilus.la -rpath /usr/lib/aarch64-linux-gnu nucleicacid_db.lo nautilus-tools.lo nautilus-ss-find.lo nautilus-join.lo nautilus-target.lo cootilus-build.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/nucleicacid_db.o .libs/nautilus-tools.o .libs/nautilus-ss-find.o .libs/nautilus-join.o .libs/nautilus-target.o .libs/cootilus-build.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro 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-I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom_types.lo atom_types.cc swig -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -o pyrogen-swig.cc -python -shadow -c++ ../pyrogen/pyrogen-swig.i /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o restraints.lo restraints.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o restraints-boost.lo restraints-boost.cc ../pyrogen/restraints.hh:57: Warning 389: operator[] ignored (consider using %extend) libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cairo-molecule.cc -fPIC -DPIC -o .libs/cairo-molecule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmff-restraints.cc -fPIC -DPIC -o .libs/mmff-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c py-restraints.cc -fPIC -DPIC -o .libs/py-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c restraints.cc -fPIC -DPIC -o .libs/restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom_types.cc -fPIC -DPIC -o .libs/atom_types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c restraints-boost.cc -fPIC -DPIC -o .libs/restraints-boost.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pyrogen-swig.lo pyrogen-swig.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pyrogen-swig.cc -fPIC -DPIC -o .libs/pyrogen-swig.o In file included from cairo-molecule.hh:34, from cairo-molecule.cc:27: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cairo-molecule.hh:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from atom_types.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from mmff-restraints.hh:27, from mmff-restraints.cc:23: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from ../pyrogen/restraints-private.hh:33, from ../pyrogen/restraints.hh:39, from pyrogen-swig.cc:5383: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ ../lidia-core/lig-build.hh: In instantiation of 'std::pair lig_build::molecule_t::ligand_extents() const [with Ta = coot::cairo_atom_t; Tb = coot::cairo_bond_t]': cairo-molecule.cc:687:70: required from here 687 | std::pair ext = ligand_extents(); | ~~~~~~~~~~~~~~^~ ../lidia-core/lig-build.hh:1503:7: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1503 | ligand_extents() const { | ^~~~~~~~~~~~~~ In file included from ../ideal/simple-restraint.hh:162, from restraints-boost.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-boost.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-private.hh:33, from restraints.hh:39, from py-restraints.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-private.hh:33, from restraints.hh:39, from restraints.cc:26: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from restraints.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from restraints.cc:34: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol 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-L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot_py_restraints.so.0" && ln -s "libcoot_py_restraints.so.0.0.0" "libcoot_py_restraints.so.0") libtool: link: (cd ".libs" && rm -f "libcoot_py_restraints.so" && ln -s "libcoot_py_restraints.so.0.0.0" "libcoot_py_restraints.so") libtool: link: ( cd ".libs" && rm -f "libcoot_py_restraints.la" && ln -s "../libcoot_py_restraints.la" "libcoot_py_restraints.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/restraints-boost.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pyrogen/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs ./.libs/libcoot_py_restraints.so ../pli/.libs/libcoot-pli.so ../ideal/.libs/libcoot-ideal.so 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"-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-merge-molecules.cc -fPIC -DPIC -o .libs/coot-molecule-merge-molecules.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-colour.cc -fPIC -DPIC -o .libs/coot-colour.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule.cc -fPIC -DPIC -o .libs/coot-molecule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container.cc -fPIC -DPIC -o .libs/molecules-container.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-bonds.cc -fPIC -DPIC -o .libs/coot-molecule-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c colour-functions.cc -fPIC -DPIC -o .libs/colour-functions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-modelling.cc -fPIC -DPIC -o .libs/molecules-container-modelling.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-maps.cc -fPIC -DPIC -o .libs/coot-molecule-maps.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-validation.cc -fPIC -DPIC -o .libs/coot-molecule-validation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-a-dodec.cc -fPIC -DPIC -o .libs/make-a-dodec.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-ligand-fitting.lo molecules-container-ligand-fitting.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-ligand-fitting.cc -fPIC -DPIC -o .libs/molecules-container-ligand-fitting.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi-prob.lo phi-psi-prob.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-moltris.lo coot-molecule-moltris.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi-prob.cc -fPIC -DPIC -o .libs/phi-psi-prob.o In file included from coot-molecule-maps.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-moltris.cc -fPIC -DPIC -o .libs/coot-molecule-moltris.o In file included from ../mini-mol/mini-mol.hh:29, from ../ligand/ligand.hh:32, from ../ligand/residue_by_phi_psi.hh:37, from add-terminal-residue.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-replace-fragment.lo coot-molecule-replace-fragment.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-backup.lo coot-molecule-backup.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-replace-fragment.cc -fPIC -DPIC -o .libs/coot-molecule-replace-fragment.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-backup.cc -fPIC -DPIC -o .libs/coot-molecule-backup.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from coot-molecule.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-bonds.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-modelling.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47, from coot-molecule-maps.cc:36: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-validation.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-merge-molecules.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from coot-molecule-moltris.cc:31: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from ../ideal/simple-restraint.hh:174, from coot-molecule.hh:47, from coot-molecule.cc:38: ../ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': ../ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule-backup.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../ligand/ligand.hh:32, from ../ligand/wligand.hh:25, from molecules-container-ligand-fitting.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47, from molecules-container.hh:19, from molecules-container-ligand-fitting.cc:6: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47, from coot-molecule-backup.cc:29: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-moltris.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-replace-fragment.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-bonds-instanced.lo coot-molecule-bonds-instanced.cc In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-bonds-instanced.cc -fPIC -DPIC -o .libs/coot-molecule-bonds-instanced.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-bonds-instanced.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-mmrrcc.lo molecules-container-mmrrcc.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-mmrrcc.cc -fPIC -DPIC -o .libs/molecules-container-mmrrcc.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ molecules-container-ligand-fitting.cc: In member function 'float molecules_container_t::fit_to_map_by_random_jiggle_with_blur_using_cid(int, int, const std::string&, float, int, float)': molecules-container-ligand-fitting.cc:414:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 414 | auto p = coot::util::mean_and_variance(xmap); | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-gltf.lo molecules-container-gltf.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-mmrrcc.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-gltf.cc -fPIC -DPIC -o .libs/molecules-container-gltf.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-refine.lo coot-molecule-refine.cc In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-refine.cc -fPIC -DPIC -o .libs/coot-molecule-refine.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-superpose.lo molecules-container-superpose.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-superpose.cc -fPIC -DPIC -o .libs/molecules-container-superpose.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rigid-body-fit.lo rigid-body-fit.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rigid-body-fit.cc -fPIC -DPIC -o .libs/rigid-body-fit.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o moorhen-h-bonds.lo moorhen-h-bonds.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-gltf.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from rigid-body-fit.hh:7, from rigid-body-fit.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c moorhen-h-bonds.cc -fPIC -DPIC -o .libs/moorhen-h-bonds.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-bucca-ml-growing.lo molecules-container-bucca-ml-growing.cc In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-superpose.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-bucca-ml-growing.cc -fPIC -DPIC -o .libs/molecules-container-bucca-ml-growing.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-refine.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o instancing.lo instancing.cc In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-maps.lo molecules-container-maps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c instancing.cc -fPIC -DPIC -o .libs/instancing.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-maps.cc -fPIC -DPIC -o .libs/molecules-container-maps.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from moorhen-h-bonds.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-change-chain-id.lo coot-molecule-change-chain-id.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o blender-mesh.lo blender-mesh.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-change-chain-id.cc -fPIC -DPIC -o .libs/coot-molecule-change-chain-id.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-blender.lo coot-molecule-blender.cc In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c blender-mesh.cc -fPIC -DPIC -o .libs/blender-mesh.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-blender.cc -fPIC -DPIC -o .libs/coot-molecule-blender.o In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-bucca-ml-growing.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-maps.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-blender.lo molecules-container-blender.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-blender.cc -fPIC -DPIC -o .libs/molecules-container-blender.o In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ swig -o wrap-coot-api.cc -python -c++ coot-headless-api.i molecules-container.hh:953: Warning 325: Nested class not currently supported (auto_read_mtz_info_t ignored) molecules-container.hh:1042: Warning 325: Nested class not currently supported (r_factor_stats ignored) molecules-container.hh:1709: Warning 325: Nested class not currently supported (fit_ligand_info_t ignored) molecules-container.hh:1824: Warning 325: Nested class not currently supported (ltj_stats_t ignored) In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-change-chain-id.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o _coot_headless_api_la-molecules-container-swig.lo `test -f 'molecules-container-swig.cc' || echo './'`molecules-container-swig.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-swig.cc -fPIC -DPIC -o .libs/_coot_headless_api_la-molecules-container-swig.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-blender.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-blender.cc:3: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o _coot_headless_api_la-wrap-coot-api.lo `test -f 'wrap-coot-api.cc' || echo './'`wrap-coot-api.cc In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c wrap-coot-api.cc -fPIC -DPIC -o .libs/_coot_headless_api_la-wrap-coot-api.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-swig.cc:6: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from wrap-coot-api.cc:3435: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../ligand/libcoot-ligand.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../analysis/libcoot-analysis.la ../density-contour/libcoot-isosurface.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -Wl,-z,relro -o libcoot-api.la -rpath /usr/lib/aarch64-linux-gnu coot-molecule.lo coot-colour.lo add-terminal-residue.lo rama-plot-phi-psi.lo colour-functions.lo coot-molecule-maps.lo coot-molecule-merge-molecules.lo coot-molecule-bonds.lo coot-molecule-validation.lo molecules-container-modelling.lo molecules-container.lo make-a-dodec.lo molecules-container-ligand-fitting.lo phi-psi-prob.lo coot-molecule-moltris.lo coot-molecule-replace-fragment.lo coot-molecule-backup.lo coot-molecule-bonds-instanced.lo molecules-container-mmrrcc.lo molecules-container-gltf.lo coot-molecule-refine.lo molecules-container-superpose.lo rigid-body-fit.lo moorhen-h-bonds.lo molecules-container-bucca-ml-growing.lo instancing.lo molecules-container-maps.lo coot-molecule-change-chain-id.lo blender-mesh.lo coot-molecule-blender.lo molecules-container-blender.lo In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-molecule.o .libs/coot-colour.o .libs/add-terminal-residue.o .libs/rama-plot-phi-psi.o .libs/colour-functions.o .libs/coot-molecule-maps.o .libs/coot-molecule-merge-molecules.o .libs/coot-molecule-bonds.o .libs/coot-molecule-validation.o .libs/molecules-container-modelling.o .libs/molecules-container.o .libs/make-a-dodec.o .libs/molecules-container-ligand-fitting.o .libs/phi-psi-prob.o .libs/coot-molecule-moltris.o .libs/coot-molecule-replace-fragment.o .libs/coot-molecule-backup.o .libs/coot-molecule-bonds-instanced.o .libs/molecules-container-mmrrcc.o .libs/molecules-container-gltf.o .libs/coot-molecule-refine.o .libs/molecules-container-superpose.o .libs/rigid-body-fit.o .libs/moorhen-h-bonds.o .libs/molecules-container-bucca-ml-growing.o .libs/instancing.o .libs/molecules-container-maps.o .libs/coot-molecule-change-chain-id.o .libs/blender-mesh.o .libs/coot-molecule-blender.o .libs/molecules-container-blender.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/density-contour/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../MoleculesToTriangles/CXXClasses/.libs/libMoleculesToTrianglesCXXClasses.so ../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so ../ligand/.libs/libcoot-ligand.so ../pli/.libs/libcoot-pli.so ../ideal/.libs/libcoot-ideal.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../analysis/.libs/libcoot-analysis.so ../density-contour/.libs/libcoot-isosurface.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coords/.libs/libcoot-coords.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-api.so.0 -o .libs/libcoot-api.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-api.so.0" && ln -s "libcoot-api.so.0.0.0" "libcoot-api.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-api.so" && ln -s "libcoot-api.so.0.0.0" "libcoot-api.so") libtool: link: ( cd ".libs" && rm -f "libcoot-api.la" && ln -s "../libcoot-api.la" "libcoot-api.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined -Wl,-z,relro -o _coot_headless_api.la -rpath /usr/lib/python3/dist-packages _coot_headless_api_la-wrap-coot-api.lo _coot_headless_api_la-molecules-container-swig.lo libcoot-api.la libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/_coot_headless_api_la-wrap-coot-api.o .libs/_coot_headless_api_la-molecules-container-swig.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/api/.libs ./.libs/libcoot-api.so -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot_headless_api.so.0 -o .libs/_coot_headless_api.so.0.0.0 libtool: link: (cd ".libs" && rm -f "_coot_headless_api.so.0" && ln -s "_coot_headless_api.so.0.0.0" "_coot_headless_api.so.0") libtool: link: (cd ".libs" && rm -f "_coot_headless_api.so" && ln -s "_coot_headless_api.so.0.0.0" "_coot_headless_api.so") libtool: link: ( cd ".libs" && rm -f "_coot_headless_api.la" && ln -s "../_coot_headless_api.la" "_coot_headless_api.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/api' Making all in layla make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" 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-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o layla_embedded.lo layla_embedded.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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-DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 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-I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c state.cpp -fPIC -DPIC -o .libs/state.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c layla_embedded.cpp -fPIC -DPIC -o .libs/layla_embedded.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c signals.cpp -fPIC -DPIC -o .libs/signals.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c notifier.cpp -fPIC -DPIC -o .libs/notifier.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ui.cpp -fPIC -DPIC -o .libs/ui.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas.cpp -fPIC -DPIC -o .libs/ligand_editor_canvas.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c python_utils.cpp -fPIC -DPIC -o .libs/python_utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/model.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/model.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c utils.cpp -fPIC -DPIC -o .libs/utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/core.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/core.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/tools.lo ligand_editor_canvas/tools.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/tools.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/tools.o In file included from python_utils.cpp:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/render.lo ligand_editor_canvas/render.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/render.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/render.o In file included from main.cpp:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ui.cpp:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ligand_editor_canvas/core.cpp: In member function 'void coot::ligand_editor_canvas::impl::WidgetCoreData::undo_edition()': ligand_editor_canvas/core.cpp:74:34: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 74 | if(this->state_stack->size() > this->state_stack_pos + 1) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp: In member function 'std::pair<_graphene_point_t, _graphene_point_t> coot::ligand_editor_canvas::impl::MoleculeRenderContext::cropped_bond_coords(const graphene_point_t&, unsigned int, const graphene_point_t&, unsigned int)': ligand_editor_canvas/render.cpp:756:219: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 756 | std::pair MoleculeRenderContext::cropped_bond_coords(const graphene_point_t& first_atom, unsigned int first_atom_idx, const graphene_point_t& second_atom, unsigned int second_atom_idx) { | ^ ligand_editor_canvas/model.cpp: In member function 'std::pair coot::ligand_editor_canvas::CanvasMolecule::get_on_screen_coords(float, float) const': ligand_editor_canvas/model.cpp:144:85: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 144 | std::pair CanvasMolecule::get_on_screen_coords(float x, float y) const noexcept { | ^~~~~~~~ ligand_editor_canvas/model.cpp: In member function 'void coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()': ligand_editor_canvas/model.cpp:564:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 564 | while(i!=ring.size()) { | ~^~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:586:62: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] 586 | bool x_requirement = bond_ptr->second_atom_x > bond_ptr->first_atom_x == sign_of_y_offset_from_center; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:588:62: warning: suggest parentheses around comparison in operand of '!=' [-Wparentheses] 588 | bool y_requirement = bond_ptr->second_atom_y <= bond_ptr->first_atom_y != sign_of_x_offset_from_center; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:615:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 615 | if(j==ring.size()) { | ~^~~~~~~~~~~~~ ligand_editor_canvas/model.cpp: In member function 'void coot::ligand_editor_canvas::CanvasMolecule::build_internal_molecule_representation(const RDGeom::INT_POINT2D_MAP&)': ligand_editor_canvas/model.cpp:786:54: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'std::tuple_element<0, const std::pair >::type' {aka 'const int'} [-Wsign-compare] 786 | auto the_other_atom_idx = first_atom_idx == atom_idx ? second_atom_idx : first_atom_idx; | ~~~~~~~~~~~~~~~^~~~~~~~~~~ ligand_editor_canvas/model.cpp: In lambda function: ligand_editor_canvas/model.cpp:872:68: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 872 | unsigned int the_other_atom_idx = bond->first_atom_idx == atom_idx ? bond->second_atom_idx : bond->first_atom_idx; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ signals.cpp: In lambda function: signals.cpp:68:36: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 68 | if(gtk_combo_box_get_active(cb) == -1) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94, from signals.cpp:22: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:69:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 69 | gtk_combo_box_set_active(cb,0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_apply(GtkButton*, gpointer)': signals.cpp:73:34: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 73 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(molecule_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:83:39: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 83 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(molecule_combobox), smiles.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_generator_monomer_id_combobox_changed(GtkComboBox*, gpointer)': signals.cpp:96:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 96 | if(strcmp(gtk_combo_box_get_active_id(self),"Custom") != 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_generator_program_combobox_changed(GtkComboBox*, gpointer)': signals.cpp:108:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 108 | if(strcmp(gtk_combo_box_get_active_id(self),"acedrg") == 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_generator_input_format_combobox_changed(GtkComboBox*, gpointer)': signals.cpp:121:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 121 | if(strcmp(gtk_combo_box_get_active_id(self),"molfile") == 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_apply_dialog_accepted(GtkButton*, gpointer)': signals.cpp:159:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 159 | if(strcmp(gtk_combo_box_get_active_id(GTK_COMBO_BOX(monomer_id_combobox)),"Custom") != 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:160:73: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 160 | auto monomer_id = std::string(gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(monomer_id_combobox))); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:169:71: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 169 | auto program_name = std::string(gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(program_combobox))); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:172:76: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 172 | auto input_format_name = std::string(gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(input_format_combobox))); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:175:74: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 175 | const auto* molecule_smiles_cstr = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(molecule_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_wedge(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:869:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 869 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_dashed_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:910:95: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 910 | auto [current,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); | ^ ligand_editor_canvas/render.cpp:912:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 912 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_wavy_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:943:110: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 943 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_side_bond_line(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool, std::optional, std::optional)': ligand_editor_canvas/render.cpp:1067:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1067 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp:1115:5: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1115 | ); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_centered_double_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:1171:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1171 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp:1185:110: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1185 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from state.cpp:38: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ state.cpp: In member function 'void coot::layla::LaylaState::load_from_smiles()': state.cpp:147:39: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 147 | auto* load_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43, from ligand_editor_canvas/render.hpp:25, from ligand_editor_canvas/core.hpp:30, from ligand_editor_canvas.hpp:25, from state.hpp:24, from state.cpp:22: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:30, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcssenumtypes.h:11, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:33, from /usr/include/gtk-4.0/gtk/gtk.h:29: state.cpp: In lambda function: state.cpp:167:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 167 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:166:41: note: in expansion of macro 'G_CALLBACK' 166 | g_signal_connect(entry, "activate", G_CALLBACK(+[](GtkEntry* entry, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:176:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 176 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:175:48: note: in expansion of macro 'G_CALLBACK' 175 | g_signal_connect(submit_button, "clicked", G_CALLBACK(+[](GtkButton* btn, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:200:51: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 200 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 201 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 202 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 204 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 205 | "Error: Molecule could not be constructed.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 | e.what() | ~~~~~~~~ 207 | ); | ~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:179:47: note: in expansion of macro 'G_CALLBACK' 179 | g_signal_connect(load_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:192: /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:211:28: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 211 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:179:47: note: in expansion of macro 'G_CALLBACK' 179 | g_signal_connect(load_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::file_import_molecule()': state.cpp:221:44: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 221 | GtkWidget *load_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:246:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 246 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:293:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 293 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 294 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 295 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 297 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 298 | "Error: Monomer \"%s\" could not be found.\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 | monomer_type.c_str() | ~~~~~~~~~~~~~~~~~~~~ 300 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:304:32: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 304 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::run_choose_element_dialog()': state.cpp:313:49: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 313 | auto* choose_element_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:337:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 337 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:336:48: note: in expansion of macro 'G_CALLBACK' 336 | g_signal_connect(submit_button, "clicked", G_CALLBACK(+[](GtkButton* btn, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:353:51: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 353 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 354 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 355 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 357 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 358 | "Error: Invalid symbol:\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | e.what() | ~~~~~~~~ 360 | ); | ~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:340:57: note: in expansion of macro 'G_CALLBACK' 340 | g_signal_connect(choose_element_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:364:28: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 364 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:340:57: note: in expansion of macro 'G_CALLBACK' 340 | g_signal_connect(choose_element_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::file_fetch_molecule()': state.cpp:374:44: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 374 | GtkWidget *load_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:396:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 396 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:429:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 429 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 430 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 431 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 433 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 434 | "Error: Molecule could not be fetched.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 | e.what() | ~~~~~~~~ 436 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:440:32: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 440 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::save_file(unsigned int, const char*, GtkWindow*)': state.cpp:479:47: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 479 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 480 | parent, | ~~~~~~~ 481 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 483 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 484 | "Error: Molecule could not be saved to file.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 | e.what() | ~~~~~~~~ 486 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:487:24: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 487 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:570:56: warning: too many arguments for format [-Wformat-extra-args] 570 | "Nothing was chosen!", | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:561:58: note: in expansion of macro 'G_CALLBACK' 561 | g_signal_connect(G_OBJECT(ok_button), "clicked", G_CALLBACK(+[](GtkButton* button, gpointer userdata){ | ^~~~~~~~~~ state.cpp:566:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 566 | auto* message = gtk_message_dialog_new(window, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 567 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 569 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 570 | "Nothing was chosen!", | ~~~~~~~~~~~~~~~~~~~~~~ 571 | NULL); | ~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:561:58: note: in expansion of macro 'G_CALLBACK' 561 | g_signal_connect(G_OBJECT(ok_button), "clicked", G_CALLBACK(+[](GtkButton* button, gpointer userdata){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:572:32: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 572 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:561:58: note: in expansion of macro 'G_CALLBACK' 561 | g_signal_connect(G_OBJECT(ok_button), "clicked", G_CALLBACK(+[](GtkButton* button, gpointer userdata){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:607:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 607 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 608 | GTK_WINDOW(source_object), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 611 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 612 | "Error: Molecule could not be loaded.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 | e.what() | ~~~~~~~~ 614 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas.cpp: In function 'void on_hover(GtkEventControllerMotion*, gdouble, gdouble, gpointer)': ligand_editor_canvas.cpp:260:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 260 | auto coords = target.get_on_screen_coords(atom.x, atom.y); | ^ ligand_editor_canvas/model.cpp: In instantiation of 'coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings():: [with auto:30 = std::shared_ptr]': /usr/include/c++/14/bits/predefined_ops.h:318:23: required from 'bool __gnu_cxx::__ops::_Iter_pred<_Predicate>::operator()(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()::]' 318 | { return bool(_M_pred(*__it)); } | ~~~~~~~^~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2101:14: required from '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' 2101 | if (__pred(__first)) | ~~~~~~^~~~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2146:23: required from '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' 2146 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2147 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:3876:28: required from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()::]' 3876 | return std::__find_if(__first, __last, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 3877 | __gnu_cxx::__ops::__pred_iter(__pred)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:572:37: required from here 572 | auto bond = std::find_if(bonds_of_atom_one->second.begin(),bonds_of_atom_one->second.end(),[=](const auto bond){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 | }); | ~~ ligand_editor_canvas/model.cpp:573:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:573:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:574:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:574:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp: In instantiation of 'coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int):: [with auto:35 = std::shared_ptr]': /usr/include/c++/14/bits/predefined_ops.h:318:23: required from 'bool __gnu_cxx::__ops::_Iter_pred<_Predicate>::operator()(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int)::]' 318 | { return bool(_M_pred(*__it)); } | ~~~~~~~^~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2101:14: required from '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' 2101 | if (__pred(__first)) | ~~~~~~^~~~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2146:23: required from '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' 2146 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2147 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:3876:28: required from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int)::]' 3876 | return std::__find_if(__first, __last, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 3877 | __gnu_cxx::__ops::__pred_iter(__pred)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:928:31: required from here 928 | auto target = std::find_if(bonds_for_atom_a->second.begin(),bonds_for_atom_a->second.end(),[=](const auto& bond){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 | }); | ~~ ligand_editor_canvas/model.cpp:929:38: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ ligand_editor_canvas/model.cpp:929:72: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_wedge(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:846:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 846 | void MoleculeRenderContext::draw_straight_wedge(const CanvasMolecule::Bond& bond, bool reversed) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:846:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:846:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:867:63: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 867 | auto [origin_cropped,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:869:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 869 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_dashed_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:889:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 889 | void MoleculeRenderContext::draw_straight_dashed_bond(const CanvasMolecule::Bond& bond, bool reversed) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:889:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:889:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:889:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:910:56: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 910 | auto [current,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:912:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 912 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_wavy_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:934:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 934 | void MoleculeRenderContext::draw_wavy_bond(const CanvasMolecule::Bond& bond) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_side_bond_line(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool, std::optional, std::optional)': ligand_editor_canvas/render.cpp:1066:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1066 | void MoleculeRenderContext::draw_side_bond_line(const CanvasMolecule::Bond& bond, bool addOrSub, std::optional first_shortening_proportion, std::optional second_shortening_proportion) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:1066:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1066:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1066:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1067:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1067 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp:1110:50: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1110 | auto [first_c,second_c] = cropped_bond_coords( | ~~~~~~~~~~~~~~~~~~~^ 1111 | first_atom_centered, | ~~~~~~~~~~~~~~~~~~~~ 1112 | bond.first_atom_idx, | ~~~~~~~~~~~~~~~~~~~~ 1113 | second_atom_centered, | ~~~~~~~~~~~~~~~~~~~~~ 1114 | bond.second_atom_idx | ~~~~~~~~~~~~~~~~~~~~ 1115 | ); | ~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_centered_double_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:1170:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1170 | void MoleculeRenderContext::draw_centered_double_bond(const CanvasMolecule::Bond& bond) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:1170:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1170:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1170:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1171:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1171 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp:1185:46: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1185 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-layla.la -rpath /usr/lib/aarch64-linux-gnu layla_embedded.lo generators.lo notifier.lo signals.lo state.lo ui.lo utils.lo ligand_editor_canvas/core.lo ligand_editor_canvas.lo ligand_editor_canvas/model.lo ligand_editor_canvas/tools.lo ligand_editor_canvas/render.lo python_utils.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/layla_embedded.o .libs/generators.o .libs/notifier.o .libs/signals.o .libs/state.o .libs/ui.o .libs/utils.o ligand_editor_canvas/.libs/core.o .libs/ligand_editor_canvas.o ligand_editor_canvas/.libs/model.o ligand_editor_canvas/.libs/tools.o ligand_editor_canvas/.libs/render.o .libs/python_utils.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-layla.so.0 -o .libs/libcoot-layla.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-layla.so.0" && ln -s "libcoot-layla.so.0.0.0" "libcoot-layla.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-layla.so" && ln -s "libcoot-layla.so.0.0.0" "libcoot-layla.so") libtool: link: ( cd ".libs" && rm -f "libcoot-layla.la" && ln -s "../libcoot-layla.la" "libcoot-layla.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o layla main.o libcoot-layla.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/layla main.o -lcurl ./.libs/libcoot-layla.so ../utils/.libs/libcoot-utils.so -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' Making all in validation-graphs make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o residue-validation-information.lo residue-validation-information.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi 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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o validation-information.lo validation-information.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-validation-information.cc -fPIC -DPIC -o .libs/residue-validation-information.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-information.cc -fPIC -DPIC -o .libs/validation-information.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-view-widget.cc -fPIC -DPIC -o .libs/sequence-view-widget.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-graphs.cc -fPIC -DPIC -o .libs/validation-graphs.o validation-graph-widget.cc: In function 'void coot_validation_graph_snapshot(GtkWidget*, GtkSnapshot*)': validation-graph-widget.cc:229:66: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 229 | GtkStyleContext* style_context = gtk_widget_get_style_context(widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from validation-graph-widget.hh:28, from validation-graph-widget.cc:26: /usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ validation-graph-widget.cc:230:32: warning: 'void gtk_style_context_get_color(GtkStyleContext*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 230 | gtk_style_context_get_color(style_context,&attribute_color); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:267: /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:112:6: note: declared here 112 | void gtk_style_context_get_color (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused 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-Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../analysis/.libs/libcoot-analysis.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-validation-graphs.so.0 -o .libs/libcoot-validation-graphs.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-validation-graphs.so.0" && ln -s "libcoot-validation-graphs.so.0.0.0" "libcoot-validation-graphs.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-validation-graphs.so" && ln -s "libcoot-validation-graphs.so.0.0.0" "libcoot-validation-graphs.so") libtool: link: ( cd ".libs" && rm -f "libcoot-validation-graphs.la" && ln -s "../libcoot-validation-graphs.la" "libcoot-validation-graphs.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' Making all in src make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 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-I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o boot-python.lo boot-python.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ 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-DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-side-chain.lo c-interface-build-side-chain.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c init_coot_as_python_module.cc -fPIC -DPIC -o .libs/init_coot_as_python_module.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c boids.cc -fPIC -DPIC -o .libs/boids.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c boot-python.cc -fPIC -DPIC -o .libs/boot-python.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-overlaps.cc -fPIC -DPIC -o .libs/atom-overlaps.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c scm-boot-guile.cc -fPIC -DPIC -o .libs/scm-boot-guile.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c git-revision-count.cc -fPIC -DPIC -o .libs/git-revision-count.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-analysis.cc -fPIC -DPIC -o .libs/c-interface-analysis.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-side-chain.cc -fPIC -DPIC -o .libs/c-interface-build-side-chain.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-main-chain.cc -fPIC -DPIC -o .libs/c-interface-build-main-chain.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-bonds.cc -fPIC -DPIC -o .libs/c-interface-bonds.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-symmetry.lo c-interface-build-symmetry.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-morph.cc -fPIC -DPIC -o .libs/c-interface-build-morph.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build.cc -fPIC -DPIC -o .libs/c-interface-build.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-gui.lo c-interface-build-gui.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-symmetry.cc -fPIC -DPIC -o .libs/c-interface-build-symmetry.o In file included from boids.cc:108: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-gui.cc -fPIC -DPIC -o .libs/c-interface-build-gui.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-curlew.lo c-interface-curlew.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-curlew.cc -fPIC -DPIC -o .libs/c-interface-curlew.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-database.lo c-interface-database.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-database.cc -fPIC -DPIC -o .libs/c-interface-database.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-gui.lo c-interface-gui.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-main-chain.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-gui.cc -fPIC -DPIC -o .libs/c-interface-gui.o In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-analysis.cc:34: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-bonds.cc:42: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-side-chain.cc:56: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build.cc:56: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-morph.cc:55: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-symmetry.cc:55: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-gui.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from atom-overlaps.cc:40: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:37, from c-interface-curlew.cc:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-main-chain.cc:63: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-bonds.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from init_coot_as_python_module.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-analysis.cc:36: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-gui.cc:72: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build.cc:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-side-chain.cc:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-morph.cc:65: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-curlew.cc:70: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-gui.cc:59: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-symmetry.cc:64: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from atom-overlaps.cc:39: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from atom-overlaps.cc:42: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-main-chain.cc:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:39, from c-interface-bonds.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-utils.hh:26, from curl-utils.hh:36, from c-interface-gui.cc:70: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-gui.cc:78: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-curlew.cc:63: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void open_cif_dictionary_file_selector_dialog()': c-interface-gui.cc:156:65: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 156 | GtkWidget *aa_hbutton_box = gtk_dialog_get_content_area(GTK_DIALOG(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void fill_remarks_browswer_chooser(GtkWidget*)': c-interface-gui.cc:267:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 267 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_coot_references_button(GtkWidget*)': c-interface-gui.cc:823:47: warning: 'GtkWidget* gtk_dialog_get_header_bar(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 823 | GtkWidget *hbox = gtk_dialog_get_header_bar(GTK_DIALOG(widget)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:174:13: note: declared here 174 | GtkWidget * gtk_dialog_get_header_bar (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_recentre_on_read_pdb_combobox(GtkWidget*)': c-interface-gui.cc:1194:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1194 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1196:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1196 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), 1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void store_window_size(int, GtkWidget*)': c-interface-gui.cc:1317:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1317 | gtk_widget_get_allocation(widget, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_filechooser_filter_button(GtkWidget*, short int)': c-interface-gui.cc:1649:30: warning: 'void gtk_file_chooser_add_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1649 | gtk_file_chooser_add_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1650 | GTK_FILE_FILTER (filterall)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:136:22: note: declared here 136 | void gtk_file_chooser_add_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1651:30: warning: 'void gtk_file_chooser_add_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1651 | gtk_file_chooser_add_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1652 | GTK_FILE_FILTER (filterselect)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:136:22: note: declared here 136 | void gtk_file_chooser_add_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1656:32: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1656 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1657 | GTK_FILE_FILTER (filterselect)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1660:32: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1660 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1661 | GTK_FILE_FILTER (filterall)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_filechooser_extra_filter_button(GtkWidget*, const gchar*, const gchar*)': c-interface-gui.cc:1676:31: warning: 'void gtk_file_chooser_add_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1676 | gtk_file_chooser_add_filter (GTK_FILE_CHOOSER (fileselection), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1677 | GTK_FILE_FILTER (filter)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:136:22: note: declared here 136 | void gtk_file_chooser_add_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void set_refine_params_comboboxes()': c-interface-gui.cc:2115:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2115 | if (cb1) gtk_combo_box_set_active(GTK_COMBO_BOX(cb1), g.refine_params_dialog_geman_mcclure_alpha_combobox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2116:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2116 | if (cb2) gtk_combo_box_set_active(GTK_COMBO_BOX(cb2), g.refine_params_dialog_rama_restraints_weight_combobox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2117:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2117 | if (cb3) gtk_combo_box_set_active(GTK_COMBO_BOX(cb3), g.refine_params_dialog_lennard_jones_epsilon_combobox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2118:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2118 | if (cb4) gtk_combo_box_set_active(GTK_COMBO_BOX(cb4), g.refine_params_dialog_torsions_weight_combox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void fill_chiral_volume_molecule_combobox(GtkWidget*)': c-interface-gui.cc:2180:50: warning: 'GtkWidget* gtk_combo_box_new()' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2180 | GtkWidget *combobox_new = gtk_combo_box_new(); | ~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:74:15: note: declared here 74 | GtkWidget *gtk_combo_box_new (void); | ^~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void pepflips_by_difference_map_dialog()': c-interface-gui.cc:2205:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 2205 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(model_combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2206:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 2206 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(map_combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In lambda function: c-interface-gui.cc:3359:40: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 3359 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(self), &rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'GtkWidget* wrapped_create_show_symmetry_window()': c-interface-gui.cc:3368:68: warning: 'GtkWidget* gtk_color_button_new_with_rgba(const GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 3368 | GtkWidget *colour_button = gtk_color_button_new_with_rgba(&rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:82: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorbutton.h:53:14: note: declared here 53 | GtkWidget * gtk_color_button_new_with_rgba (const GdkRGBA *rgba); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void save_coordinates_using_widget(GtkWidget*)': c-interface-gui.cc:3746:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 3746 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void save_symmetry_coords_from_filechooser(GtkWidget*)': c-interface-gui.cc:3773:43: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 3773 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'GtkWidget* wrapped_create_residue_editor_select_monomer_type_dialog()': c-interface-gui.cc:4475:36: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4475 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(combo_box)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:4484:38: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4484 | gtk_combo_box_text_append_text (GTK_COMBO_BOX_TEXT(combo_box), s.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:4485:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 4485 | gtk_combo_box_set_active(GTK_COMBO_BOX(combo_box), i); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from init_coot_as_python_module.cc:34: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build.cc:74: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-side-chain.cc:72: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-morph.cc:71: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-gui.cc:65: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-symmetry.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-build-gui.cc: In function 'void fill_move_molecule_here_dialog(GtkWidget*)': c-interface-build-gui.cc:248:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 248 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc: In function 'bool renumber_residues_from_widget(GtkWidget*)': c-interface-build-gui.cc:420:64: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 420 | std::string chain_id = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(chain_id_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc: In function 'void mutate_sequence_chain_combobox_changed(GtkWidget*, gpointer)': c-interface-build-gui.cc:914:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 914 | char *atc = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc: In function 'GtkWidget* wrapped_create_fast_ss_search_dialog()': c-interface-build-gui.cc:1617:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1617 | gtk_combo_box_set_active(GTK_COMBO_BOX(helix_temp_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1618:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1618 | gtk_combo_box_set_active(GTK_COMBO_BOX(helix_noaa_combobox), 1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1619:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1619 | gtk_combo_box_set_active(GTK_COMBO_BOX(strand_temp_combobox), 1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1620:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1620 | gtk_combo_box_set_active(GTK_COMBO_BOX(strand_noaa_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1621:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1621 | gtk_combo_box_set_active(GTK_COMBO_BOX(radius_combobox),1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread 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-Wno-unused -std=c++17 -c -o c-interface-gtk2.lo c-interface-gtk2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-gtk2.cc -fPIC -DPIC -o .libs/c-interface-gtk2.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-info.cc -fPIC -DPIC -o .libs/c-interface-info.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-kk.cc -fPIC -DPIC -o .libs/c-interface-kk.o In file included from c-interface-gtk2.cc:54: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-image.lo c-interface-image.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ligands-gui.lo c-interface-ligands-gui.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-image.cc -fPIC -DPIC -o .libs/c-interface-image.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ligands-gui.cc -fPIC -DPIC -o .libs/c-interface-ligands-gui.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-info.cc:64: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-info.cc:67: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-gtk2.cc:59: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ligands.lo c-interface-ligands.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ligands.cc -fPIC -DPIC -o .libs/c-interface-ligands.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-maps.lo c-interface-maps.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-info.cc:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-maps.cc -fPIC -DPIC -o .libs/c-interface-maps.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mmdb.lo c-interface-mmdb.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mmdb.cc -fPIC -DPIC -o .libs/c-interface-mmdb.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-kk.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface.h:82, from c-interface-gtk2.cc:56: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' c-interface-gtk2.cc: In function 'gboolean fileselection_sort_button_foreach_func(GtkTreeModel*, GtkTreePath*, GtkTreeIter*, gpointer)': c-interface-gtk2.cc:101:23: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 101 | gtk_tree_model_get (model, iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 102 | 0, &file_name, | ~~~~~~~~~~~~~~ 103 | -1); | ~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc:104:43: warning: 'char* gtk_tree_path_to_string(GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 104 | tree_path_str = gtk_tree_path_to_string(path); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:209:14: note: declared here 209 | char *gtk_tree_path_to_string (GtkTreePath *path); | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc: In function 'gboolean fileselection_filter_button_foreach_func(GtkTreeModel*, GtkTreePath*, GtkTreeIter*, gpointer)': c-interface-gtk2.cc:143:23: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 143 | gtk_tree_model_get (model, iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 144 | 0, &file_name, | ~~~~~~~~~~~~~~ 145 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc:151:34: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 151 | if (gtk_tree_model_get_iter(model, iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc:154:31: warning: 'gboolean gtk_list_store_remove(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 154 | gtk_list_store_remove(GTK_LIST_STORE(model), iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:95:15: note: declared here 95 | gboolean gtk_list_store_remove (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ligands-gui.cc:51: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ligands.cc:46: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mogul.lo c-interface-mogul.cc In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-maps.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mogul.cc -fPIC -DPIC -o .libs/c-interface-mogul.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mogul-scripting.lo c-interface-mogul-scripting.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mogul-scripting.cc -fPIC -DPIC -o .libs/c-interface-mogul-scripting.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mutate.lo c-interface-mutate.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from c-interface-image.cc:38: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-ligands-gui.cc:54: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from c-interface-image.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-maps.cc:52: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-ligands.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from c-interface-mogul.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mutate.cc -fPIC -DPIC -o .libs/c-interface-mutate.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from c-interface-mogul-scripting.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-mmdb.cc:40: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-image.cc:47: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ c-interface-info.cc: In function 'PyObject* get_pointer_position_frac_py()': c-interface-info.cc:2631:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2631 | std::pair xy = g.get_pointer_position_frac(); | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ncs.lo c-interface-ncs.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ncs.cc -fPIC -DPIC -o .libs/c-interface-ncs.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-network.lo c-interface-network.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-network.cc -fPIC -DPIC -o .libs/c-interface-network.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from c-interface-ligands-gui.cc:57: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-mogul.cc:33: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from c-interface-maps.cc:60: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-ligands.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-mutate.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ncs.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:37, from c-interface-network.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-image.cc: In function 'GtkWidget* get_image_widget_for_comp_id(const std::string&, int)': c-interface-image.cc:132:45: warning: 'GtkWidget* gtk_image_new_from_pixbuf(GdkPixbuf*)' is deprecated: Use 'gtk_image_new_from_paintable' instead [-Wdeprecated-declarations] 132 | r = gtk_image_new_from_pixbuf(pixbuf); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkentry.h:40, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/gtkimage.h:78:12: note: declared here 78 | GtkWidget* gtk_image_new_from_pixbuf (GdkPixbuf *pixbuf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'GtkCellRenderer* coot::mogul_results_add_cell_renderer(GtkTreeView*, GtkTreeStore*, const std::string&, int, int)': c-interface-mogul.cc:218:63: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 218 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:219:56: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 219 | GtkTreeViewColumn *column = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:220:34: warning: 'void gtk_tree_view_column_set_title(GtkTreeViewColumn*, const char*)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 220 | gtk_tree_view_column_set_title(column, column_title.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:165:25: note: declared here 165 | void gtk_tree_view_column_set_title (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:221:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 221 | gtk_tree_view_append_column(tree_view, column); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:222:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 222 | gtk_tree_view_column_pack_start(column, cell_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:223:38: warning: 'void gtk_tree_view_column_add_attribute(GtkTreeViewColumn*, GtkCellRenderer*, const char*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 223 | gtk_tree_view_column_add_attribute(column, cell_renderer, "text", pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:101:25: note: declared here 101 | void gtk_tree_view_column_add_attribute (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:225:43: warning: 'void gtk_tree_view_column_set_sort_column_id(GtkTreeViewColumn*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 225 | gtk_tree_view_column_set_sort_column_id(column, pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:201:25: note: declared here 201 | void gtk_tree_view_column_set_sort_column_id (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::fill_mogul_bonds_tab(GtkTreeView*, GtkWidget*, const mogul&, mmdb::Residue*)': c-interface-mogul.cc:289:55: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 289 | GtkTreeStore *tree_store_bonds = gtk_tree_store_new(8, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 | G_TYPE_INT, | ~~~~~~~~~~~ 291 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 | G_TYPE_STRING, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:292: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:295:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 295 | gtk_tree_view_set_model(tv_bonds, GTK_TREE_MODEL(tree_store_bonds)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:320:37: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 320 | gtk_tree_store_append(tree_store_bonds, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:321:34: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 321 | gtk_tree_store_set(tree_store_bonds, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 | 0, atom_name_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 323 | 1, atom_name_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 324 | 2, m[i].counts, | ~~~~~~~~~~~~~~~ 325 | 3, m_value.c_str(), | ~~~~~~~~~~~~~~~~~~~ 326 | 4, m_mean.c_str(), | ~~~~~~~~~~~~~~~~~~ 327 | 5, m_median.c_str(), | ~~~~~~~~~~~~~~~~~~~~ 328 | 6, m_std_dev.c_str(), | ~~~~~~~~~~~~~~~~~~~~~ 329 | 7, m[i].z, | ~~~~~~~~~~ 330 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:346:61: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 346 | GtkTreeSelection *sel_bonds = gtk_tree_view_get_selection(GTK_TREE_VIEW(mogul_bonds_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::on_mogul_bonds_selection_changed(GtkTreeSelection*, gpointer)': c-interface-mogul.cc:362:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 362 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:290: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:368:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 368 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 369 | 0, &atom_id_1, | ~~~~~~~~~~~~~~ 370 | 1, &atom_id_2, | ~~~~~~~~~~~~~~ 371 | 2, &value, | ~~~~~~~~~~ 372 | 3, &mean, | ~~~~~~~~~ 373 | 4, &median, | ~~~~~~~~~~~ 374 | 5, &esd, | ~~~~~~~~ 375 | 6, &z, | ~~~~~~ 376 | -1); | ~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::fill_mogul_angles_tab(GtkTreeView*, GtkWidget*, const mogul&, mmdb::Residue*)': c-interface-mogul.cc:427:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 427 | GtkTreeStore *tree_store_angles = gtk_tree_store_new(9, | ~~~~~~~~~~~~~~~~~~^~~ 428 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 | G_TYPE_INT, | ~~~~~~~~~~~ 430 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 | G_TYPE_STRING, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:434:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 434 | gtk_tree_view_set_model(tv_angles, GTK_TREE_MODEL(tree_store_angles)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:463:40: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 463 | gtk_tree_store_append(tree_store_angles, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:464:37: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 464 | gtk_tree_store_set(tree_store_angles, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 | 0, atom_name_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 466 | 1, atom_name_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 467 | 2, atom_name_3.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 468 | 3, m[i].counts, | ~~~~~~~~~~~~~~~ 469 | 4, m_value.c_str(), | ~~~~~~~~~~~~~~~~~~~ 470 | 5, m_mean.c_str(), | ~~~~~~~~~~~~~~~~~~ 471 | 6, m_median.c_str(), | ~~~~~~~~~~~~~~~~~~~~ 472 | 7, m_std_dev.c_str(), | ~~~~~~~~~~~~~~~~~~~~~ 473 | 8, m[i].z, | ~~~~~~~~~~ 474 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:492:62: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 492 | GtkTreeSelection *sel_angles = gtk_tree_view_get_selection(GTK_TREE_VIEW(mogul_angles_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::on_mogul_angles_selection_changed(GtkTreeSelection*, gpointer)': c-interface-mogul.cc:507:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 507 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:515:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 515 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 516 | 0, &atom_id_1, | ~~~~~~~~~~~~~~ 517 | 1, &atom_id_2, | ~~~~~~~~~~~~~~ 518 | 2, &atom_id_3, | ~~~~~~~~~~~~~~ 519 | 3, &value, | ~~~~~~~~~~ 520 | 4, &mean, | ~~~~~~~~~ 521 | 5, &median, | ~~~~~~~~~~~ 522 | 6, &esd, | ~~~~~~~~ 523 | 7, &z, | ~~~~~~ 524 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::fill_mogul_torsions_tab(GtkTreeView*, GtkWidget*, const mogul&, mmdb::Residue*)': c-interface-mogul.cc:591:58: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 591 | GtkTreeStore *tree_store_torsions = gtk_tree_store_new(6, | ~~~~~~~~~~~~~~~~~~^~~ 592 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 | G_TYPE_FLOAT, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:597:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 597 | gtk_tree_view_set_model(tv_torsions, GTK_TREE_MODEL(tree_store_torsions)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:622:31: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 622 | gtk_tree_store_append(tree_store_torsions, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:623:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 623 | gtk_tree_store_set(tree_store_torsions, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 | 0, atom_name_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 625 | 1, atom_name_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 626 | 2, atom_name_3.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 627 | 3, atom_name_4.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 628 | 4, m[i].value, | ~~~~~~~~~~~~~~ 629 | 5, m[i].dmin, | ~~~~~~~~~~~~~ 630 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:641:62: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 641 | GtkTreeSelection *sel_angles = gtk_tree_view_get_selection(GTK_TREE_VIEW(mogul_torsions_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::on_mogul_torsions_selection_changed(GtkTreeSelection*, gpointer)': c-interface-mogul.cc:655:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 655 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:663:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 663 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 664 | 0, &atom_id_1, | ~~~~~~~~~~~~~~ 665 | 1, &atom_id_2, | ~~~~~~~~~~~~~~ 666 | 2, &atom_id_3, | ~~~~~~~~~~~~~~ 667 | 3, &atom_id_4, | ~~~~~~~~~~~~~~ 668 | 4, &value, | ~~~~~~~~~~ 669 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-network.cc:52: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-nucleotides.lo c-interface-nucleotides.cc In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-ncs.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-nucleotides.cc -fPIC -DPIC -o .libs/c-interface-nucleotides.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-mutate.cc:44: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-mutate.cc:58: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-pisa.lo c-interface-pisa.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-pisa.cc -fPIC -DPIC -o .libs/c-interface-pisa.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-pisa-gui.lo c-interface-pisa-gui.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-network.cc:35: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-network.cc: In function 'PyObject* curl_progress_info_py(const char*)': c-interface-network.cc:427:13: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 427 | info = CURLINFO_CONTENT_LENGTH_DOWNLOAD; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-info.h:138: /usr/include/aarch64-linux-gnu/curl/curl.h:2897:3: note: declared here 2897 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-network.cc:435:13: warning: 'CURLINFO_SIZE_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_SIZE_DOWNLOAD_T [-Wdeprecated-declarations] 435 | info = CURLINFO_SIZE_DOWNLOAD; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/aarch64-linux-gnu/curl/curl.h:2880:3: note: declared here 2880 | CURLINFO_SIZE_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-pisa-gui.cc -fPIC -DPIC -o .libs/c-interface-pisa-gui.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-ncs.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-nucleotides.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-preferences.lo c-interface-preferences.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-python.lo c-interface-python.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-refine.lo c-interface-refine.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-preferences.cc -fPIC -DPIC -o .libs/c-interface-preferences.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-python.cc -fPIC -DPIC -o .libs/c-interface-python.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-refine.cc -fPIC -DPIC -o .libs/c-interface-refine.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ c-interface-ncs.cc: In function 'std::vector make_ncs_maps(int, int)': c-interface-ncs.cc:954:115: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 954 | graphics_info_t::molecules[imol_model].chain_centre_and_radius(ncs_ghosts[ighst].target_chain_id); | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-pisa.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cc-interface.hh:39, from c-interface-nucleotides.cc:59: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-residues.lo c-interface-residues.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-refmac.lo c-interface-refmac.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-residues.cc -fPIC -DPIC -o .libs/c-interface-residues.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-refmac.lo simple-refmac.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-refmac.cc -fPIC -DPIC -o .libs/c-interface-refmac.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-pisa-gui.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from c-interface-python.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-refmac.cc -fPIC -DPIC -o .libs/simple-refmac.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-pisa.cc:32: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-scm.lo c-interface-scm.cc In file included from cc-interface.hh:39, from c-interface-pisa.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-scm.cc -fPIC -DPIC -o .libs/c-interface-scm.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-preferences.cc:64: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:37, from c-interface-refmac.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-python.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from ../coot-utils/glyco-tree.hh:32, from c-interface-residues.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-pisa-gui.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-pisa-gui.cc:35: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-pisa-gui.cc: In function 'void coot::pisa_interfaces_gui(const std::vector&)': c-interface-pisa-gui.cc:53:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 53 | gtk_tree_store_new (12, G_TYPE_INT, G_TYPE_INT, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 | G_TYPE_FLOAT, G_TYPE_FLOAT, G_TYPE_FLOAT, G_TYPE_INT, G_TYPE_INT, G_TYPE_INT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | G_TYPE_INT); | ~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:292: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:58:30: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 58 | gtk_tree_view_set_model(tv_interfaces, GTK_TREE_MODEL(tree_store_interfaces)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:60:31: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 60 | gtk_tree_store_append(tree_store_interfaces, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:61:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 61 | gtk_tree_store_set(tree_store_interfaces, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 | 0, gui_info[i].imol_1, | ~~~~~~~~~~~~~~~~~~~~~~ 63 | 1, gui_info[i].imol_2, | ~~~~~~~~~~~~~~~~~~~~~~ 64 | 2, gui_info[i].chain_id_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | 3, gui_info[i].chain_id_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | 4, gui_info[i].symop.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 | 5, gui_info[i].interface_area, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | 6, gui_info[i].interface_solv_en, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | 7, gui_info[i].interface_pvalue, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | 8, gui_info[i].n_h_bonds, | ~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | 9, gui_info[i].n_salt_bridges, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | 10, gui_info[i].n_ss_bonds, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | 11, gui_info[i].n_cov_bonds, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:89:58: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 89 | GtkTreeSelection *sel = gtk_tree_view_get_selection(GTK_TREE_VIEW(treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc: In function 'void coot::add_pisa_interfaces_cell_renderer(GtkTreeView*, const std::string&, int)': c-interface-pisa-gui.cc:107:63: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 107 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:108:56: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 108 | GtkTreeViewColumn *column = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:109:34: warning: 'void gtk_tree_view_column_set_title(GtkTreeViewColumn*, const char*)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 109 | gtk_tree_view_column_set_title(column, column_title.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:165:25: note: declared here 165 | void gtk_tree_view_column_set_title (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:110:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 110 | gtk_tree_view_append_column(tree_view, column); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:111:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 111 | gtk_tree_view_column_pack_start(column, cell_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:112:38: warning: 'void gtk_tree_view_column_add_attribute(GtkTreeViewColumn*, GtkCellRenderer*, const char*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 112 | gtk_tree_view_column_add_attribute(column, cell_renderer, "text", pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:101:25: note: declared here 101 | void gtk_tree_view_column_add_attribute (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:114:43: warning: 'void gtk_tree_view_column_set_sort_column_id(GtkTreeViewColumn*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 114 | gtk_tree_view_column_set_sort_column_id(column, pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:201:25: note: declared here 201 | void gtk_tree_view_column_set_sort_column_id (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc: In function 'void coot::on_pisa_interfaces_seletion_changed(GtkTreeSelection*, gpointer)': c-interface-pisa-gui.cc:135:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 135 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:290: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:142:26: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 142 | gtk_tree_model_get (model, &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 143 | 0, &imol_1, | ~~~~~~~~~~~ 144 | 1, &imol_2, | ~~~~~~~~~~~ 145 | 2, &chain_id_1, | ~~~~~~~~~~~~~~~ 146 | 3, &chain_id_2, | ~~~~~~~~~~~~~~~ 147 | -1); | ~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-refine.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from c-interface-scm.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sequence.lo c-interface-sequence.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-refmac.cc:33: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sequence.cc -fPIC -DPIC -o .libs/c-interface-sequence.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-residues.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from simple-refmac.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-preferences.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-preferences.cc: In function 'void show_preferences()': c-interface-preferences.cc:102:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 102 | gtk_combo_box_text_append_text(combobox, s.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc:118:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 118 | gtk_combo_box_text_append_text(combobox, fonts[j].c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc: In function 'void update_preference_gui()': c-interface-preferences.cc:291:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 291 | gtk_combo_box_set_active(GTK_COMBO_BOX(w), ivalue); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc: In lambda function: c-interface-preferences.cc:473:49: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 473 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(self), &rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc: In function 'void update_preference_gui()': c-interface-preferences.cc:484:77: warning: 'GtkWidget* gtk_color_button_new_with_rgba(const GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 484 | GtkWidget *colour_button = gtk_color_button_new_with_rgba(&bg_colour); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:82: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorbutton.h:53:14: note: declared here 53 | GtkWidget * gtk_color_button_new_with_rgba (const GdkRGBA *rgba); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sfs.lo c-interface-sfs.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-scm.cc:35: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-refine.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sfs.cc -fPIC -DPIC -o .libs/c-interface-sfs.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sharpen.lo c-interface-sharpen.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sharpen.cc -fPIC -DPIC -o .libs/c-interface-sharpen.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30, from c-interface-residues.cc:39: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from c-interface-sfs.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-sequence.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:39, from simple-refmac.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-superpose.lo c-interface-superpose.cc simple-refmac.cc: In function 'void wrapped_create_simple_refmac_dialog()': simple-refmac.cc:63:37: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 63 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox_file), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 | g.mtz_file_for_refmac.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ simple-refmac.cc:65:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 65 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox_file), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-superpose.cc -fPIC -DPIC -o .libs/c-interface-superpose.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-validate.lo c-interface-validate.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-view.lo c-interface-view.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-validate.cc -fPIC -DPIC -o .libs/c-interface-validate.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-view.cc -fPIC -DPIC -o .libs/c-interface-view.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-widgets.lo c-interface-widgets.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-waters.lo c-interface-waters.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-widgets.cc -fPIC -DPIC -o .libs/c-interface-widgets.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-sequence.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-waters.cc -fPIC -DPIC -o .libs/c-interface-waters.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-validate.cc:49: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-sharpen.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from /usr/include/c++/14/istream:41, from /usr/include/c++/14/sstream:40, from ../validation-graphs/../geometry/residue-and-atom-specs.hh:26, from ../validation-graphs/residue-validation-information.hh:30, from ../validation-graphs/validation-information.hh:30, from graphics-info.h:32: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(const void*) [with _CharT = char; _Traits = std::char_traits]', inlined from 'void update_preference_gui()' at c-interface-preferences.cc:452:86: /usr/include/c++/14/ostream:299:25: warning: 'colour_button' may be used uninitialized [-Wmaybe-uninitialized] 299 | { return _M_insert(__p); } | ~~~~~~~~~^~~~~ c-interface-preferences.cc: In function 'void update_preference_gui()': c-interface-preferences.cc:225:14: note: 'colour_button' was declared here 225 | GtkWidget *colour_button; | ^~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-waters-gui.lo c-interface-waters-gui.cc In file included from cc-interface.hh:37, from c-interface-view.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-waters-gui.cc -fPIC -DPIC -o .libs/c-interface-waters-gui.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface.lo c-interface.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface.cc -fPIC -DPIC -o .libs/c-interface.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-validate.cc:52: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-superpose.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-test.lo c-interface-test.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-waters.cc:47: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-test.cc -fPIC -DPIC -o .libs/c-interface-test.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-view.cc:34: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-alignment.lo cc-interface-alignment.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-widgets.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-graphics.lo cc-interface-graphics.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-alignment.cc -fPIC -DPIC -o .libs/cc-interface-alignment.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-waters-gui.cc:46: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-graphics.cc -fPIC -DPIC -o .libs/cc-interface-graphics.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface.cc:91: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from c-interface.cc:96: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-waters.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-widgets.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:39, from c-interface-validate.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-validate.cc: In function 'GtkWidget* wrapped_create_check_waters_dialog()': c-interface-validate.cc:136:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 136 | gtk_combo_box_set_active(GTK_COMBO_BOX(check_waters_action_combobox), 0); // "Check" | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-validate.cc:143:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 143 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-validate.cc: In function 'void do_check_waters_by_widget(GtkWidget*)': c-interface-validate.cc:294:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 294 | gchar *at = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(action_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-superpose.cc:46: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-merge.lo cc-interface-merge.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-waters-gui.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-merge.cc -fPIC -DPIC -o .libs/cc-interface-merge.o In file included from cc-interface.hh:37, from cc-interface-graphics.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-molecular-representation.lo cc-interface-molecular-representation.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface.cc:102: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-molecular-representation.cc -fPIC -DPIC -o .libs/cc-interface-molecular-representation.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-alignment.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-test.cc:89: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from c-interface-test.cc:94: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cc-interface-graphics.cc:31: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-widgets.cc:34: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc: In function 'void remarks_dialog(int)': c-interface-widgets.cc:164:42: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 164 | GtkWidget *d = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ c-interface-widgets.cc:169:58: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 169 | GtkWidget *vbox = gtk_dialog_get_content_area(GTK_DIALOG(d)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc:250:37: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 250 | gtk_dialog_add_button(GTK_DIALOG(d), "Close", GTK_RESPONSE_CLOSE); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc: In function 'void simple_text_dialog(const std::string&, const std::string&, int, int)': c-interface-widgets.cc:608:36: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 608 | GtkWidget *d = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ c-interface-widgets.cc:612:52: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 612 | GtkWidget *vbox = gtk_dialog_get_content_area(GTK_DIALOG(d)); // new method to get vbox fromm dialog | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc:634:54: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 634 | GtkWidget *close_button = gtk_dialog_add_button(GTK_DIALOG(d), "Close", 2); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-widgets.cc:741: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from cc-interface.hh:39, from c-interface-waters.cc:66: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ c-interface.cc: In function 'void mono_mode()': c-interface.cc:1174:53: warning: 'int gtk_widget_get_allocated_width(GtkWidget*)' is deprecated: Use 'gtk_widget_get_width' instead [-Wdeprecated-declarations] 1174 | int x_size = gtk_widget_get_allocated_width(gl_widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:472:23: note: declared here 472 | int gtk_widget_get_allocated_width (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc:1175:54: warning: 'int gtk_widget_get_allocated_height(GtkWidget*)' is deprecated: Use 'gtk_widget_get_height' instead [-Wdeprecated-declarations] 1175 | int y_size = gtk_widget_get_allocated_height(gl_widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:474:23: note: declared here 474 | int gtk_widget_get_allocated_height (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void make_image_povray(const char*)': c-interface.cc:4500:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4500 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void make_image_povray_py(const char*)': c-interface.cc:4524:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4524 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void sequence_view(int)': c-interface.cc:7653:57: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 7653 | GtkStyleContext *sc = gtk_widget_get_style_context(button); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc:7654:34: warning: 'void gtk_style_context_add_class(GtkStyleContext*, const char*)' is deprecated [-Wdeprecated-declarations] 7654 | gtk_style_context_add_class(sc, "circular"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:267: /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:90:10: note: declared here 90 | void gtk_style_context_add_class (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-test.cc:102: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-merge.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-molecular-representation.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-molecular-symmetry.lo cc-interface-molecular-symmetry.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from cc-interface-alignment.cc:43: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-molecular-symmetry.cc -fPIC -DPIC -o .libs/cc-interface-molecular-symmetry.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from cc-interface-molecular-representation.cc:39: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from c-interface-test.cc:438: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from cc-interface-merge.cc:42: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from cc-interface.hh:37, from cc-interface-molecular-symmetry.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-scripting.lo cc-interface-scripting.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-scripting.cc -fPIC -DPIC -o .libs/cc-interface-scripting.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-map-utils.lo cc-interface-map-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE 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1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 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-Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-map-utils.cc -fPIC -DPIC -o .libs/cc-interface-map-utils.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-user-defined-atom-colours.lo cc-interface-user-defined-atom-colours.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-png.cc -fPIC -DPIC -o .libs/cc-interface-png.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-user-defined-atom-colours.cc -fPIC -DPIC -o .libs/cc-interface-user-defined-atom-colours.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cfc.lo cfc.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o change-dir.lo change-dir.cc c-interface-test.cc: In function 'PyObject* test_function_py(PyObject*, PyObject*)': c-interface-test.cc:1569:31: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1569 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cfc.cc -fPIC -DPIC -o .libs/cfc.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c change-dir.cc -fPIC -DPIC -o .libs/change-dir.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cc-interface-molecular-symmetry.cc:37: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cmtz-interface.lo cmtz-interface.cc In file included from change-dir.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o command-line.lo command-line.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cmtz-interface.cc -fPIC -DPIC -o .libs/cmtz-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c command-line.cc -fPIC -DPIC -o .libs/command-line.o In file included from cc-interface-png.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o command-line-extern.lo command-line-extern.cc In file included from cc-interface.hh:37, from cc-interface-user-defined-atom-colours.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c command-line-extern.cc -fPIC -DPIC -o .libs/command-line-extern.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-application.lo coot-application.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-application.cc -fPIC -DPIC -o .libs/coot-application.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-scripting.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cc-interface-user-defined-atom-colours.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-map-utils.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cmtz-interface.cc:53: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cc-interface-png.cc:55: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cmtz-interface.cc:58: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from command-line.cc:61: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-colour.lo coot-colour.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-colour.cc -fPIC -DPIC -o .libs/coot-colour.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface.h:82, from cc-interface-user-defined-atom-colours.cc:26: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from command-line-extern.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-align.lo coot-align.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, from cfc.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:39, from cc-interface-map-utils.cc:31: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-align.cc -fPIC -DPIC -o .libs/coot-align.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from coot-application.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30, from cc-interface-png.cc:53: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cfc.cc:45: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from coot-align.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cmtz-interface.cc:43: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc: In function 'void my_combo_box_text_add_items(GtkComboBox*, const std::vector&, int)': cmtz-interface.cc:541:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 541 | GtkListStore *store = gtk_list_store_new(1, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ cmtz-interface.cc:545:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 545 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:546:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 546 | gtk_list_store_set(store, &iter, 0, col_lab.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ cmtz-interface.cc:553:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 553 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:554:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 554 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox), renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:556:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 556 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:559:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 559 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), active_label_index); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-nomenclature.lo coot-nomenclature.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from command-line.cc:56: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-nomenclature.cc -fPIC -DPIC -o .libs/coot-nomenclature.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:39, from command-line.cc:68: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ coot-application.cc: In function 'int start_using_application(int, char**)': coot-application.cc:103:69: warning: 'G_APPLICATION_FLAGS_NONE' is deprecated: Use 'G_APPLICATION_DEFAULT_FLAGS' instead [-Wdeprecated-declarations] 103 | GtkApplication *app = gtk_application_new ("org.emsley.coot", G_APPLICATION_FLAGS_NONE); | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gio/giotypes.h:30, from /usr/include/glib-2.0/gio/gio.h:28, from /usr/include/gtk-4.0/gtk/css/gtkcsssection.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:36, from /usr/include/gtk-4.0/gtk/gtk.h:29: /usr/include/glib-2.0/gio/gioenums.h:1545:3: note: declared here 1545 | G_APPLICATION_FLAGS_NONE GIO_DEPRECATED_ENUMERATOR_IN_2_74_FOR(G_APPLICATION_DEFAULT_FLAGS), | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o coot-glue-gtk2.lo coot-glue-gtk2.c In file included from cc-interface.hh:39, from command-line-extern.cc:49: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c coot-glue-gtk2.c -fPIC -DPIC -o .libs/coot-glue-gtk2.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-glue-gtk2-python.lo coot-glue-gtk2-python.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-hydrogens.lo coot-hydrogens.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-glue-gtk2-python.cc -fPIC -DPIC -o .libs/coot-glue-gtk2-python.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-hydrogens.cc -fPIC -DPIC -o .libs/coot-hydrogens.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-phi-psi.lo coot-phi-psi.cc In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cfc-widgets.hh:28, from cfc.cc:40: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-phi-psi.cc -fPIC -DPIC -o .libs/coot-phi-psi.o In file included from ../ideal/simple-restraint.hh:162, from coot-nomenclature.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_pythonmodule.lo coot_pythonmodule.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_pythonmodule.cc -fPIC -DPIC -o .libs/coot_pythonmodule.o ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-setup-python.lo coot-setup-python.cc swig -o coot_wrap_guile_pre.cc -DUSE_MOLECULES_TO_TRIANGLES -DCOOT_USE_GTK2_INTERFACE -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_LIBCURL -I../src -I.. -guile -c++ ../src/coot.i /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o curlew-gtk4.lo curlew-gtk4.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-setup-python.cc -fPIC -DPIC -o .libs/coot-setup-python.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o draw.lo draw.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c curlew-gtk4.cc -fPIC -DPIC -o .libs/curlew-gtk4.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c draw.cc -fPIC -DPIC -o .libs/draw.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-tick-function.lo graphics-info-tick-function.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-tick-function.cc -fPIC -DPIC -o .libs/graphics-info-tick-function.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-hydrogens.cc:28: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o drag-and-drop.lo drag-and-drop.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o draw-generic-display-objects.lo draw-generic-display-objects.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c drag-and-drop.cc -fPIC -DPIC -o .libs/drag-and-drop.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c draw-generic-display-objects.cc -fPIC -DPIC -o .libs/draw-generic-display-objects.o In file included from command-arg.hh:33, from graphics-info.h:66, from coot_pythonmodule.cc:123: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dynamic-validation.lo dynamic-validation.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o eyes.lo eyes.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:37, from coot-setup-python.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dynamic-validation.cc -fPIC -DPIC -o .libs/dynamic-validation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c eyes.cc -fPIC -DPIC -o .libs/eyes.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o event-controller-callbacks.lo event-controller-callbacks.cc In file included from curlew-gtk4.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fit-loop-gui.lo fit-loop-gui.cc In file included from draw-generic-display-objects.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c event-controller-callbacks.cc -fPIC -DPIC -o .libs/event-controller-callbacks.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fit-loop-gui.cc -fPIC -DPIC -o .libs/fit-loop-gui.o In file included from cc-interface.hh:37, from drag-and-drop.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from draw.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flev.lo flev.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from coot-setup-python.cc:41: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flev.cc -fPIC -DPIC -o .libs/flev.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from curlew-gtk4.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-tick-function.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from coot_pythonmodule.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from draw-generic-display-objects.cc:38: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o framebuffer.lo framebuffer.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from dynamic-validation.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c framebuffer.cc -fPIC -DPIC -o .libs/framebuffer.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from event-controller-callbacks.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from coot-setup-python.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ coot-setup-python.cc: In function 'void setup_python_basic(int, char**)': coot-setup-python.cc:71:17: warning: 'void PySys_SetArgv(int, wchar_t**)' is deprecated [-Wdeprecated-declarations] 71 | PySys_SetArgv(argc, _argv); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/python3.13/Python.h:125, from coot-setup-python.cc:24: /usr/include/python3.13/sysmodule.h:10:38: note: declared here 10 | Py_DEPRECATED(3.11) PyAPI_FUNC(void) PySys_SetArgv(int, wchar_t **); | ^~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from fit-loop-gui.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from probe-clash-score.hh:32, from ligand-check.hh:30, from c-interface-ligands.hh:34, from flev.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from curlew-gtk4.hh:29, from curlew-gtk4.cc:29: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o old-generic-display-object.lo old-generic-display-object.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-tick-function.cc:38: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c old-generic-display-object.cc -fPIC -DPIC -o .libs/old-generic-display-object.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ draw-generic-display-objects.cc: In static member function 'static void graphics_info_t::draw_generic_objects(unsigned int)': draw-generic-display-objects.cc:213:47: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 213 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gaussian-surface.lo gaussian-surface.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o generic-objects.lo generic-objects.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gaussian-surface.cc -fPIC -DPIC -o .libs/gaussian-surface.o In file included from c-interface-ligands.hh:35: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from flev.cc:39: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c generic-objects.cc -fPIC -DPIC -o .libs/generic-objects.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from event-controller-callbacks.hh:29, from event-controller-callbacks.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In lambda function: event-controller-callbacks.cc:168:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 168 | gtk_widget_get_allocation(gl_area, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In member function 'void graphics_info_t::do_drag_pan_gtk4(GtkWidget*, double, double)': event-controller-callbacks.cc:487:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 487 | gtk_widget_get_allocation(widget, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In member function 'void graphics_info_t::do_drag_pan_gtk3(GtkWidget*, double, double)': event-controller-callbacks.cc:561:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 561 | gtk_widget_get_allocation(widget, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In member function 'void graphics_info_t::on_glarea_motion(GtkEventControllerMotion*, gdouble, gdouble, gpointer)': event-controller-callbacks.cc:812:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 812 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o geometry-graphs.lo geometry-graphs.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c geometry-graphs.cc -fPIC -DPIC -o .libs/geometry-graphs.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-residue.lo get-residue.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-residue.cc -fPIC -DPIC -o .libs/get-residue.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from flev.cc:41: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from widget-from-builder.hh:31, from fit-loop-gui.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ fit-loop-gui.cc: In function 'void fit_loop_using_dialog()': fit-loop-gui.cc:184:64: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 184 | std::string chain_id = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(chain_combobox_text)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, from gaussian-surface.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cc-interface.hh:37, from generic-objects.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from gaussian-surface.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from old-generic-display-object.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-monomer.lo get-monomer.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gl-rama-plot.lo gl-rama-plot.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-monomer.cc -fPIC -DPIC -o .libs/get-monomer.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gl-rama-plot.cc -fPIC -DPIC -o .libs/gl-rama-plot.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from generic-objects.cc:50: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from get-residue.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o globjects.lo globjects.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o globularize.lo globularize.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c globjects.cc -fPIC -DPIC -o .libs/globjects.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info.lo graphics-info.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c globularize.cc -fPIC -DPIC -o .libs/globularize.o In file included from cc-interface.hh:39, from flev.cc:57: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from gl-rama-plot.cc:329: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ gl-rama-plot.cc: In member function 'std::pair, glm::vec<2, float, glm::packed_highp> > gl_rama_plot_t::get_munged_offset_and_scale(screen_position_origins_t, const glm::vec2&, float, float, int, int) const': gl-rama-plot.cc:418:82: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 418 | int glarea_width, int glarea_height) const { | ^~~~~ In file included from get-monomer.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info.cc -fPIC -DPIC -o .libs/graphics-info.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-defines.lo graphics-info-defines.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-defines.cc -fPIC -DPIC -o .libs/graphics-info-defines.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from generic-objects.cc:40: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-defines-gtk4.lo graphics-info-defines-gtk4.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-defines-gtk4.cc -fPIC -DPIC -o .libs/graphics-info-defines-gtk4.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from get-monomer.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-draw.lo graphics-info-draw.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-draw.cc -fPIC -DPIC -o .libs/graphics-info-draw.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info.cc:64: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-draw-models.lo graphics-info-draw-models.cc In file included from command-arg.hh:33, from graphics-info.h:66, from globularize.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-draw-models.cc -fPIC -DPIC -o .libs/graphics-info-draw-models.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from get-monomer.cc:34: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info.cc:72: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-graphs.lo graphics-info-graphs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-graphs.cc -fPIC -DPIC -o .libs/graphics-info-graphs.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-defines.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-defines-gtk4.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-gui.lo graphics-info-gui.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-init.lo graphics-info-init.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-gui.cc -fPIC -DPIC -o .libs/graphics-info-gui.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-init.cc -fPIC -DPIC -o .libs/graphics-info-init.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-draw-models.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-draw.cc:48: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info.cc:43: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from graphics-info.cc:97: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-graphs.cc:51: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-graphs.cc:60: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-draw.cc:43: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw-models.cc: In static member function 'static void graphics_info_t::draw_models_for_ssao()': graphics-info-draw-models.cc:37:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 37 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw-models.cc: In static member function 'static void graphics_info_t::draw_molecules_for_ssao()': graphics-info-draw-models.cc:58:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 58 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-gui.cc:63: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info-draw.cc: In static member function 'static glm::mat4 graphics_info_t::get_molecule_mvp(bool)': graphics-info-draw.cc:632:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 632 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static glm::vec4 graphics_info_t::unproject(float)': graphics-info-draw.cc:722:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 722 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_intermediate_atoms(unsigned int)': graphics-info-draw.cc:1041:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1041 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In lambda function: graphics-info-draw.cc:1665:107: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 1665 | return std::pair(offset_rel, scales_new); | ^ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_refinement_dialog_arrow_tab()': graphics-info-draw.cc:1678:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1678 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_colour_bar()': graphics-info-draw.cc:1712:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1712 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_meshed_generic_display_object_meshes(unsigned int)': graphics-info-draw.cc:2222:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 2222 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_molecules_other_meshes(unsigned int)': graphics-info-draw.cc:2380:47: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 2380 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'void graphics_info_t::setup_hud_geometry_bars()': graphics-info-draw.cc:3020:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3020 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_buttons()': graphics-info-draw.cc:3240:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3240 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_ramachandran_plot()': graphics-info-draw.cc:3304:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3304 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In lambda function: graphics-info-draw.cc:3345:67: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3345 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'void graphics_info_t::show_accept_reject_hud_buttons()': graphics-info-draw.cc:3517:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3517 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'void graphics_info_t::reset_hud_buttons_size_and_position()': graphics-info-draw.cc:3629:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3629 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static float graphics_info_t::get_x_base_for_hud_geometry_bars()': graphics-info-draw.cc:3645:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3645 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_geometry_bars()': graphics-info-draw.cc:3670:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3670 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'std::pair graphics_info_t::check_if_hud_bar_moused_over_or_act_on_hud_bar_clicked(double, double, bool)': graphics-info-draw.cc:4008:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4008 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'bool graphics_info_t::check_if_hud_button_moused_over_or_act_on_hit(double, double, bool, bool)': graphics-info-draw.cc:4339:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4339 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_geometry_tooltip()': graphics-info-draw.cc:4420:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4420 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-info-draw.cc:4435: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ graphics-info-draw.cc: In lambda function: graphics-info-draw.cc:4612:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4612 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_bad_nbc_atom_pair_markers(unsigned int)': graphics-info-draw.cc:5481:38: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 5481 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_chiral_volume_outlier_markers(unsigned int)': graphics-info-draw.cc:5531:48: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 5531 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_ligand_view()': graphics-info-draw.cc:5724:38: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 5724 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_extra_distance_restraints(int)': graphics-info-draw.cc:6164:38: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 6164 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-init.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-intermediate.lo graphics-info-intermediate.cc In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-gui.cc:71: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-intermediate.cc -fPIC -DPIC -o .libs/graphics-info-intermediate.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-modelling.lo graphics-info-modelling.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-navigation.lo graphics-info-navigation.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-modelling.cc -fPIC -DPIC -o .libs/graphics-info-modelling.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-navigation-gtk2.lo graphics-info-navigation-gtk2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-navigation.cc -fPIC -DPIC -o .libs/graphics-info-navigation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-navigation-gtk2.cc -fPIC -DPIC -o .libs/graphics-info-navigation-gtk2.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info-graphs.cc:24: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-preferences.lo graphics-info-preferences.cc In file included from ../coot-utils/coot-map-utils.hh:33, from graphics-info-graphs.cc:83: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info-graphs.cc: In lambda function: graphics-info-graphs.cc:97:60: warning: 'gboolean gtk_list_store_remove(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 97 | return ! gtk_list_store_remove(list,iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:95:15: note: declared here 95 | gboolean gtk_list_store_remove (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc: In static member function 'static void graphics_info_t::refresh_validation_graph_model_list()': graphics-info-graphs.cc:93:26: warning: 'void gtk_tree_model_foreach(GtkTreeModel*, GtkTreeModelForeachFunc, gpointer)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 93 | gtk_tree_model_foreach( | ~~~~~~~~~~~~~~~~~~~~~~^ 94 | GTK_TREE_MODEL(validation_graph_model_list), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 | +[](GtkTreeModel* model, GtkTreePath* path, GtkTreeIter* iter, gpointer data) -> gboolean { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | GtkListStore* list = GTK_LIST_STORE(model); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 | return ! gtk_list_store_remove(list,iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 | }, | ~~ 99 | NULL | ~~~~ 100 | ); | ~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:379:19: note: declared here 379 | void gtk_tree_model_foreach (GtkTreeModel *model, | ^~~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:107:31: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 107 | gtk_list_store_append(validation_graph_model_list, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:108:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 108 | gtk_list_store_set(validation_graph_model_list, &iter, 0, label.c_str(), 1, i, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc: In lambda function: graphics-info-graphs.cc:169:45: warning: 'gboolean gtk_list_store_remove(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 169 | return gboolean(!gtk_list_store_remove(list,iter)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:95:15: note: declared here 95 | gboolean gtk_list_store_remove (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc: In static member function 'static void graphics_info_t::refresh_ramachandran_plot_model_list()': graphics-info-graphs.cc:172:26: warning: 'void gtk_tree_model_foreach(GtkTreeModel*, GtkTreeModelForeachFunc, gpointer)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 172 | gtk_tree_model_foreach(GTK_TREE_MODEL(ramachandran_plot_model_list), fn, NULL); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:379:19: note: declared here 379 | void gtk_tree_model_foreach (GtkTreeModel *model, | ^~~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:179:31: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 179 | gtk_list_store_append(ramachandran_plot_model_list, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:180:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 180 | gtk_list_store_set(ramachandran_plot_model_list, &iter, 0, label.c_str(), 1, i, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-network.lo graphics-info-network.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-preferences.cc -fPIC -DPIC -o .libs/graphics-info-preferences.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-network.cc -fPIC -DPIC -o .libs/graphics-info-network.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-gui.cc:42: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::show_refinement_and_regularization_parameters_frame()': graphics-info-gui.cc:136:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 136 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(overall_weight_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:142:37: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 142 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(overall_weight_combobox), t.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:144:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 144 | gtk_combo_box_set_active(GTK_COMBO_BOX(overall_weight_combobox), 4); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::add_status_bar_text(const std::string&)': graphics-info-gui.cc:334:28: warning: 'guint gtk_statusbar_push(GtkStatusbar*, guint, const char*)' is deprecated [-Wdeprecated-declarations] 334 | gtk_statusbar_push(GTK_STATUSBAR(statusbar), statusbar_context_id, sbt.c_str()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:263: /usr/include/gtk-4.0/gtk/deprecated/gtkstatusbar.h:50:12: note: declared here 50 | guint gtk_statusbar_push (GtkStatusbar *statusbar, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::save_directory_from_filechooser(const GtkWidget*)': graphics-info-gui.cc:357:49: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 357 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::save_directory_for_saving_from_filechooser(const GtkWidget*)': graphics-info-gui.cc:376:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 376 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::set_file_for_save_filechooser(GtkWidget*) const': graphics-info-gui.cc:464:35: warning: 'gboolean gtk_file_chooser_set_file(GtkFileChooser*, GFile*, GError**)' is deprecated [-Wdeprecated-declarations] 464 | gtk_file_chooser_set_file(GTK_FILE_CHOOSER(filechooser), file, &error); // deprecated | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-init.cc: In member function 'void graphics_info_t::init()': graphics-info-init.cc:485:55: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 485 | validation_graph_model_list = gtk_list_store_new(2,G_TYPE_STRING,G_TYPE_INT); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:121:22: note: declared here 121 | gboolean gtk_file_chooser_set_file (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:476:43: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 476 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(filechooser), stripped_name.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-init.cc:488:56: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 488 | ramachandran_plot_model_list = gtk_list_store_new(2,G_TYPE_STRING,G_TYPE_INT); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'GtkWidget* graphics_info_t::dialog_box_of_buttons_internal(const std::string&, const std::vector, std::allocator >, void (*)(), void*> >&, const std::string&)': graphics-info-gui.cc:664:38: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 664 | GtkWidget *dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ graphics-info-gui.cc:668:55: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 668 | GtkWidget *vbox_outer = gtk_dialog_get_content_area(GTK_DIALOG(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:694:25: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 694 | gtk_dialog_add_button(GTK_DIALOG(dialog), close_button_label.c_str(), GTK_RESPONSE_CLOSE); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::new_fill_combobox_with_coordinates_options(GtkWidget*, GCallback, int)': graphics-info-gui.cc:1778:51: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1778 | GtkTreeModel *model_1 = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1784:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1784 | GtkListStore *store = gtk_list_store_new(2, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1788:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 1788 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1795:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1795 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1796:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1796 | gtk_list_store_set(store, &iter, 0, imol, 1, ss.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1800:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 1800 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1801:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 1801 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox_molecule), renderer, true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1802:34: warning: 'void gtk_cell_layout_set_attributes(GtkCellLayout*, GtkCellRenderer*, ...)' is deprecated [-Wdeprecated-declarations] 1802 | gtk_cell_layout_set_attributes(GTK_CELL_LAYOUT(combobox_molecule), renderer, "text", 1, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:125:7: note: declared here 125 | void gtk_cell_layout_set_attributes (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1803:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1803 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox_molecule), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1812:34: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1812 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox_molecule), imol_active); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1813:96: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1813 | std::cout << "!!!!!!!!!!! combobox get_active() returns " << gtk_combo_box_get_active(GTK_COMBO_BOX(combobox_molecule)) << std::endl; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::fill_combobox_with_molecule_options(GtkWidget*, GCallback, int, const std::vector&)': graphics-info-gui.cc:1835:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 1835 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1837:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1837 | GtkListStore *store = gtk_list_store_new(2, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1857:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1857 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1858:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1858 | gtk_list_store_set(store, &iter, 0, imol, 1, ss.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1867:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 1867 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1868:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 1868 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox), renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1869:35: warning: 'void gtk_cell_layout_set_attributes(GtkCellLayout*, GtkCellRenderer*, ...)' is deprecated [-Wdeprecated-declarations] 1869 | gtk_cell_layout_set_attributes (GTK_CELL_LAYOUT(combobox), renderer, "text", 1, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:125:7: note: declared here 125 | void gtk_cell_layout_set_attributes (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1870:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1870 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1874:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1874 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), active_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::fill_combobox_with_coordinates_options(GtkWidget*, GCallback, int)': graphics-info-gui.cc:1902:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1902 | GtkListStore *store = gtk_list_store_new(2, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1923:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1923 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1924:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1924 | gtk_list_store_set(store, &iter, 0, imol, 1, ss.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1936:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 1936 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1937:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 1937 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox), renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1938:35: warning: 'void gtk_cell_layout_set_attributes(GtkCellLayout*, GtkCellRenderer*, ...)' is deprecated [-Wdeprecated-declarations] 1938 | gtk_cell_layout_set_attributes (GTK_CELL_LAYOUT(combobox), renderer, "text", 1, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:125:7: note: declared here 125 | void gtk_cell_layout_set_attributes (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1939:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1939 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1945:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1945 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), active_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::fill_combobox_with_undo_options(GtkWidget*)': graphics-info-gui.cc:2192:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 2192 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': graphics-info-gui.cc:3101:50: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { | ^ graphics-info-gui.cc: In static member function 'static void graphics_info_t::fill_bond_parameters_internals(GtkWidget*, int)': graphics-info-gui.cc:3652:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 3652 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(bond_width_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3668:32: warning: 'void gtk_combo_box_text_append(GtkComboBoxText*, const char*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 3668 | gtk_combo_box_text_append(GTK_COMBO_BOX_TEXT(bond_width_combobox), nullptr, s.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:65:15: note: declared here 65 | void gtk_combo_box_text_append (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3673:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3673 | gtk_combo_box_set_active(GTK_COMBO_BOX(bond_width_combobox), idx_active); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::bond_parameters_bond_width_combobox_changed(GtkWidget*, gpointer)': graphics-info-gui.cc:3747:37: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3747 | int id = gtk_combo_box_get_active(GTK_COMBO_BOX(bond_width_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::string graphics_info_t::get_active_label_in_comboboxtext(GtkComboBoxText*)': graphics-info-gui.cc:3956:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 3956 | gchar *at = gtk_combo_box_text_get_active_text(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::string graphics_info_t::get_active_label_in_combobox(GtkComboBox*) const': graphics-info-gui.cc:3967:49: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3967 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3969:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3969 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3973:31: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 3973 | gtk_tree_model_get_value(model, &iter, 0, &f_label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static std::string graphics_info_t::fill_combobox_with_chain_options(GtkWidget*, int, GCallback, const std::string&)': graphics-info-gui.cc:4015:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4015 | gtk_combo_box_text_remove_all(cb_as_text); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:4022:40: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4022 | gtk_combo_box_text_append_text(cb_as_text, ch_id.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:4024:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 4024 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox_text), i); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-mutate.lo graphics-info-mutate.cc graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4509:46: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4509 | graphics_info_t::get_pointer_position_frac() const { | ^~~~~ graphics-info-gui.cc:4516:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4516 | gtk_widget_get_allocation(glarea, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-navigation.cc:54: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-modelling.cc:65: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-mutate.cc -fPIC -DPIC -o .libs/graphics-info-mutate.o graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_refinement_dialog_arrow_tab()': graphics-info-draw.cc:1686:105: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 1686 | auto p_s = get_munged_offset_and_scale(HUDTextureMesh::TOP_RIGHT, position_natural, 1.0, 1.0, w, h); | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-navigation.cc:61: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-modelling.cc:80: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-intermediate.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-navigation-gtk2.cc:42: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-network.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-preferences.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': graphics-info-gui.cc:3101:1: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { | ^~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-mutate.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4509:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4509 | graphics_info_t::get_pointer_position_frac() const { | ^~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-navigation.cc:48: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-navigation.cc:63: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info-navigation.cc: In member function 'void graphics_info_t::update_go_to_atom_window_on_new_mol()': graphics-info-navigation.cc:825:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 825 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc: In member function 'void graphics_info_t::update_go_to_atom_window_on_other_molecule_chosen(int)': graphics-info-navigation.cc:874:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 874 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc: In static member function 'static void graphics_info_t::go_to_atom_mol_combobox_changed(GtkWidget*, gpointer)': graphics-info-navigation.cc:949:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 949 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:951:52: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 951 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:953:31: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 953 | gtk_tree_model_get_value(model, &iter, 0, &label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc: In member function 'int graphics_info_t::combobox_get_imol(GtkComboBox*) const': graphics-info-navigation.cc:982:53: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 982 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:984:55: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 984 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:989:37: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 989 | gtk_tree_model_get_value(model, &iter, 0, &label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-modelling.cc:48: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info-modelling.cc: In static member function 'static void graphics_info_t::move_molecule_here_combobox_changed(GtkWidget*, gpointer)': graphics-info-modelling.cc:5576:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 5576 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-modelling.cc:5578:52: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 5578 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-modelling.cc:5580:31: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 5580 | gtk_tree_model_get_value(model, &iter, 0, &label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-mutate.cc:61: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-navigation-gtk2.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:26, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcssenumtypes.h:11, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:33, from /usr/include/gtk-4.0/gtk/gtk.h:29: graphics-info-navigation-gtk2.cc: In lambda function: graphics-info-navigation-gtk2.cc:177:98: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 177 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:177:67: note: in expansion of macro 'GTK_TREE_VIEW' 177 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In lambda function: graphics-info-navigation-gtk2.cc:195:56: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 195 | atom_list = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:195:25: note: in expansion of macro 'GTK_TREE_VIEW' 195 | atom_list = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::fill_go_to_atom_window_residue_and_atom_lists_gtk4()': graphics-info-navigation-gtk2.cc:228:43: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 228 | tv = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:228:12: note: in expansion of macro 'GTK_TREE_VIEW' 228 | tv = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:230:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 230 | GtkTreeModel *model = gtk_tree_view_get_model(tv); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:234:27: warning: 'void gtk_tree_store_clear(GtkTreeStore*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 234 | gtk_tree_store_clear(GTK_TREE_STORE(model)); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:292: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:142:15: note: declared here 142 | void gtk_tree_store_clear (GtkTreeStore *tree_store); | ^~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:254:50: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 254 | GtkTreeStore *tree_store = gtk_tree_store_new (2, G_TYPE_STRING, G_TYPE_POINTER); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:258:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 258 | gtk_tree_view_set_model(GTK_TREE_VIEW(gtktree), GTK_TREE_MODEL(tree_store)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:261:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 261 | gtk_tree_store_append(GTK_TREE_STORE(tree_store), &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:265:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 265 | gtk_tree_store_set (tree_store, &toplevel, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 266 | CHAIN_COL, residue_chains[ichain].chain_id.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 | RESIDUE_COL, NULL, | ~~~~~~~~~~~~~~~~~~ 268 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:275:31: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 275 | gtk_tree_store_append(GTK_TREE_STORE(tree_store), &child, &toplevel); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:280:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 280 | gtk_tree_store_set(tree_store, &child, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 281 | CHAIN_COL, lab.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 282 | RESIDUE_COL, res_spec_ptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:288:66: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 288 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:290:76: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new_with_attributes(const char*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 290 | GtkTreeViewColumn *column = gtk_tree_view_column_new_with_attributes ("Chains", cell_renderer, "markup", 0, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:87:25: note: declared here 87 | GtkTreeViewColumn *gtk_tree_view_column_new_with_attributes (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:293:34: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 293 | gtk_tree_view_append_column(GTK_TREE_VIEW (tv), GTK_TREE_VIEW_COLUMN (column)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:295:66: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 295 | GtkTreeSelection* tree_sel = gtk_tree_view_get_selection (tv); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:296:34: warning: 'void gtk_tree_selection_set_mode(GtkTreeSelection*, GtkSelectionMode)' is deprecated [-Wdeprecated-declarations] 296 | gtk_tree_selection_set_mode(tree_sel, GTK_SELECTION_SINGLE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:290: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:76:18: note: declared here 76 | void gtk_tree_selection_set_mode (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:300:45: warning: 'void gtk_tree_selection_set_select_function(GtkTreeSelection*, GtkTreeSelectionFunc, gpointer, GDestroyNotify)' is deprecated [-Wdeprecated-declarations] 300 | gtk_tree_selection_set_select_function(tree_sel, residue_tree_selection_func, NULL, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:81:18: note: declared here 81 | void gtk_tree_selection_set_select_function (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:307:52: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 307 | GtkTreeModel *model = gtk_tree_view_get_model(GTK_TREE_VIEW(atom_list)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:310:30: warning: 'void gtk_list_store_clear(GtkListStore*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 310 | gtk_list_store_clear(list_store); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:128:15: note: declared here 128 | void gtk_list_store_clear (GtkListStore *list_store); | ^~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In lambda function: graphics-info-navigation-gtk2.cc:332:98: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 332 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:332:67: note: in expansion of macro 'GTK_TREE_VIEW' 332 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static gboolean graphics_info_t::residue_tree_selection_func(GtkTreeSelection*, GtkTreeModel*, GtkTreePath*, gboolean, gpointer)': graphics-info-navigation-gtk2.cc:420:32: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 420 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:422:26: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 422 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:432:35: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 432 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &residue_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::residue_tree_residue_row_activated(GtkTreeView*, GtkTreePath*, GtkTreeViewColumn*, gpointer)': graphics-info-navigation-gtk2.cc:487:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 487 | GtkTreeModel *model = gtk_tree_view_get_model(treeview); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:490:32: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 490 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:492:26: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 492 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:499:32: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 499 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &residue_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::fill_go_to_atom_atom_list_gtk2(GtkWidget*, int, char*, int, char*)': graphics-info-navigation-gtk2.cc:581:50: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 581 | atom_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:581:19: note: in expansion of macro 'GTK_TREE_VIEW' 581 | atom_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:594:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 594 | GtkTreeModel *model = gtk_tree_view_get_model(atom_tree); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:596:39: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 596 | list_store = gtk_list_store_new (2, G_TYPE_STRING, G_TYPE_POINTER); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:600:27: warning: 'void gtk_list_store_clear(GtkListStore*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 600 | gtk_list_store_clear(list_store); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:128:15: note: declared here 128 | void gtk_list_store_clear (GtkListStore *list_store); | ^~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:605:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 605 | gtk_tree_view_set_model(GTK_TREE_VIEW(atom_tree), GTK_TREE_MODEL(list_store)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:609:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 609 | gtk_list_store_append(GTK_LIST_STORE(list_store), &toplevel); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:610:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 610 | gtk_list_store_set(GTK_LIST_STORE(list_store), &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 | CHAIN_COL, atoms[iatom].button_label.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 | RESIDUE_COL, (gpointer) atoms[iatom].atom, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:617:57: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 617 | GtkCellRenderer *cell = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:619:51: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new_with_attributes(const char*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 619 | gtk_tree_view_column_new_with_attributes ("Atoms", cell, "text", 0, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:87:25: note: declared here 87 | GtkTreeViewColumn *gtk_tree_view_column_new_with_attributes (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:620:35: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 620 | gtk_tree_view_append_column (GTK_TREE_VIEW (atom_tree), GTK_TREE_VIEW_COLUMN (column)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:622:66: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 622 | GtkTreeSelection* tree_sel = gtk_tree_view_get_selection (atom_tree); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:623:34: warning: 'void gtk_tree_selection_set_mode(GtkTreeSelection*, GtkSelectionMode)' is deprecated [-Wdeprecated-declarations] 623 | gtk_tree_selection_set_mode(tree_sel, GTK_SELECTION_SINGLE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:76:18: note: declared here 76 | void gtk_tree_selection_set_mode (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:626:46: warning: 'void gtk_tree_selection_set_select_function(GtkTreeSelection*, GtkTreeSelectionFunc, gpointer, GDestroyNotify)' is deprecated [-Wdeprecated-declarations] 626 | gtk_tree_selection_set_select_function (tree_sel, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 627 | graphics_info_t::atom_tree_selection_func, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 | NULL, NULL); | ~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:81:18: note: declared here 81 | void gtk_tree_selection_set_select_function (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::atom_tree_atom_row_activated(GtkTreeView*, GtkTreePath*, GtkTreeViewColumn*, gpointer)': graphics-info-navigation-gtk2.cc:642:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 642 | GtkTreeModel *model = gtk_tree_view_get_model(treeview); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:645:31: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 645 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:647:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 647 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:654:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 654 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &atom_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static gboolean graphics_info_t::atom_tree_selection_func(GtkTreeSelection*, GtkTreeModel*, GtkTreePath*, gboolean, gpointer)': graphics-info-navigation-gtk2.cc:688:31: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 688 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:690:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 690 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:697:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 697 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &atom_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-preferences.cc:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-preferences.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info-preferences.cc: In static member function 'static void graphics_info_t::preferences_toolbar_icon_toggled(GtkCellRendererToggle*, gchar*, gpointer, int)': graphics-info-preferences.cc:712:53: warning: 'GtkTreePath* gtk_tree_path_new_from_string(const char*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 712 | GtkTreePath *path = gtk_tree_path_new_from_string (path_string); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:201:14: note: declared here 201 | GtkTreePath *gtk_tree_path_new_from_string (const char *path); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:716:26: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 716 | gtk_tree_model_get_iter(model, &iter, path); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:717:21: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 717 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 718 | 0, &value, | ~~~~~~~~~~ 719 | 3, &icon_pos, -1); | ~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:722:22: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 722 | gtk_list_store_set (GTK_LIST_STORE (model), &iter, 0, value, -1); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:730:22: warning: 'void gtk_tree_path_free(GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 730 | gtk_tree_path_free (path); | ~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:228:14: note: declared here 228 | void gtk_tree_path_free (GtkTreePath *path); | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc: In member function 'void graphics_info_t::fill_preferences_toolbar_icons(GtkWidget*, GtkWidget*, int)': graphics-info-preferences.cc:775:45: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 775 | GtkWidget *icons_tree = gtk_tree_view_new(); | ~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:776:37: warning: 'void gtk_tree_view_set_headers_visible(GtkTreeView*, gboolean)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 776 | gtk_tree_view_set_headers_visible(GTK_TREE_VIEW(icons_tree), FALSE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:209:24: note: declared here 209 | void gtk_tree_view_set_headers_visible (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:26, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcssenumtypes.h:11, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:33, from /usr/include/gtk-4.0/gtk/gtk.h:29: graphics-info-preferences.cc:790:59: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 790 | GtkTreeModel *model = GTK_TREE_MODEL(gtk_list_store_new(4, G_TYPE_BOOLEAN, GDK_TYPE_PIXBUF, G_TYPE_STRING, G_TYPE_INT)); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:30:41: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 30 | #define GTK_TREE_MODEL(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_MODEL, GtkTreeModel)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:790:26: note: in expansion of macro 'GTK_TREE_MODEL' 790 | GtkTreeModel *model = GTK_TREE_MODEL(gtk_list_store_new(4, G_TYPE_BOOLEAN, GDK_TYPE_PIXBUF, G_TYPE_STRING, G_TYPE_INT)); | ^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:800:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 800 | gtk_tree_view_set_model(GTK_TREE_VIEW(icons_tree), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:802:41: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 802 | button_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:803:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 803 | icon_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:804:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 804 | text_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:809:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 809 | gtk_list_store_append(GTK_LIST_STORE(model), &toplevel); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:857:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 857 | gtk_list_store_set(GTK_LIST_STORE(model), &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | BUTTON_COL, "", | ~~~~~~~~~~~~~~~ 859 | ICON_COL, icon, | ~~~~~~~~~~~~~~~ 860 | TEXT_COL, item.icon_text.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 | INDEX_COL, item.icon_pos, | ~~~~~~~~~~~~~~~~~~~~~~~~~ 862 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:866:41: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 866 | button_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:867:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 867 | gtk_tree_view_append_column(GTK_TREE_VIEW(icons_tree), button_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:868:50: warning: 'GtkCellRenderer* gtk_cell_renderer_toggle_new()' is deprecated [-Wdeprecated-declarations] 868 | button_renderer = gtk_cell_renderer_toggle_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:77: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertoggle.h:40:18: note: declared here 40 | GtkCellRenderer *gtk_cell_renderer_toggle_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:869:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 869 | gtk_tree_view_column_pack_start(button_col, GTK_CELL_RENDERER(button_renderer), TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:871:39: warning: 'void gtk_tree_view_column_set_attributes(GtkTreeViewColumn*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 871 | gtk_tree_view_column_set_attributes(button_col, button_renderer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 | "active", BUTTON_COL, | ~~~~~~~~~~~~~~~~~~~~~ 873 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:106:25: note: declared here 106 | void gtk_tree_view_column_set_attributes (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:885:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 885 | icon_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:886:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 886 | gtk_tree_view_append_column(GTK_TREE_VIEW(icons_tree), icon_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:887:48: warning: 'GtkCellRenderer* gtk_cell_renderer_pixbuf_new()' is deprecated [-Wdeprecated-declarations] 887 | icon_renderer = gtk_cell_renderer_pixbuf_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:72: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendererpixbuf.h:39:18: note: declared here 39 | GtkCellRenderer *gtk_cell_renderer_pixbuf_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:888:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 888 | gtk_tree_view_column_pack_start(icon_col, icon_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:889:39: warning: 'void gtk_tree_view_column_set_attributes(GtkTreeViewColumn*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 889 | gtk_tree_view_column_set_attributes(icon_col, icon_renderer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 890 | "pixbuf", ICON_COL, | ~~~~~~~~~~~~~~~~~~~ 891 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:106:25: note: declared here 106 | void gtk_tree_view_column_set_attributes (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:894:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 894 | text_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:895:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 895 | gtk_tree_view_append_column(GTK_TREE_VIEW(icons_tree), text_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:896:46: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 896 | text_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:897:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 897 | gtk_tree_view_column_pack_start(text_col, text_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:898:39: warning: 'void gtk_tree_view_column_set_attributes(GtkTreeViewColumn*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 898 | gtk_tree_view_column_set_attributes(text_col, text_renderer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 899 | "text", TEXT_COL, | ~~~~~~~~~~~~~~~~~ 900 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:106:25: note: declared here 106 | void gtk_tree_view_column_set_attributes (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc: In static member function 'static void graphics_info_t::update_toolbar_icons(GtkTreeModel*, int)': graphics-info-preferences.cc:987:36: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 987 | if (gtk_tree_model_get_iter_first(model, &iter)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:989:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 989 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 990 | 0, &button_value, | ~~~~~~~~~~~~~~~~~ 991 | 3, &col_index, -1); | ~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:997:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 997 | gtk_list_store_set (GTK_LIST_STORE (model), &iter, 0, 1, -1); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:1000:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1000 | gtk_list_store_set (GTK_LIST_STORE (model), &iter, 0, 0, -1); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:1003:38: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1003 | } while (gtk_tree_model_iter_next(model, &iter)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': graphics-info-gui.cc:3101:1: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { | ^~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4509:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4509 | graphics_info_t::get_pointer_position_frac() const { | ^~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-mutate.cc:58: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-lsq.lo graphics-info-lsq.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-opengl.lo graphics-info-opengl.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 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-DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-pick.lo graphics-info-pick.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 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graphics-info-opengl.cc -fPIC -DPIC -o .libs/graphics-info-opengl.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-pick.cc -fPIC -DPIC -o .libs/graphics-info-pick.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-refmac.lo graphics-info-refmac.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-refmac.cc -fPIC -DPIC -o .libs/graphics-info-refmac.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-render-scene.lo graphics-info-render-scene.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-render.cc -fPIC -DPIC -o .libs/graphics-info-render.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-render-scene.cc -fPIC -DPIC -o .libs/graphics-info-render-scene.o In file included from graphics-info-render-scene.cc:27: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-residues.lo graphics-info-residues.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-pick.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-residues.cc -fPIC -DPIC -o .libs/graphics-info-residues.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-refine.lo graphics-info-refine.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-refine.cc -fPIC -DPIC -o .libs/graphics-info-refine.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-lsq.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-refmac.cc:71: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-opengl.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-refmac.cc:79: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-lsq.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-residues.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-render.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-pick.cc:42: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from graphics-info-render-scene.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-refmac.cc:50: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-scripting.lo graphics-info-scripting.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-scripting.cc -fPIC -DPIC -o .libs/graphics-info-scripting.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-refine.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-opengl.cc: In static member function 'static glm::vec4 graphics_info_t::unproject(float, float, float)': graphics-info-opengl.cc:350:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 350 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-lsq.cc:39: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from graphics-info-pick.cc:56: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-state.lo graphics-info-state.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-statics.lo graphics-info-statics.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-state.cc -fPIC -DPIC -o .libs/graphics-info-state.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-statics.cc -fPIC -DPIC -o .libs/graphics-info-statics.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from graphics-info-render.cc:1203: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-render-scene.cc:36: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-render-scene.cc: In lambda function: graphics-info-render-scene.cc:731:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 731 | gtk_widget_get_allocation(gl_area, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-superpose.lo graphics-info-superpose.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-superpose.cc -fPIC -DPIC -o .libs/graphics-info-superpose.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-scripting.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-statics.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-trackball.lo graphics-info-trackball.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-ligand-view.lo graphics-ligand-view.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-trackball.cc -fPIC -DPIC -o .libs/graphics-info-trackball.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-ligand-view.cc -fPIC -DPIC -o .libs/graphics-ligand-view.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-ligand-mesh-molecule.lo graphics-ligand-mesh-molecule.cc In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-state.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-ligand-mesh-molecule.cc -fPIC -DPIC -o .libs/graphics-ligand-mesh-molecule.o ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-scripting.cc:35: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3906, from /usr/include/c++/14/math.h:36, from /usr/include/python3.13/Python.h:22, from graphics-info-statics.cc:28: /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': graphics-info-statics.cc:293:84: required from here 293 | std::pair graphics_info_t::mouse_previous_position = std::make_pair(0.0, 0.0); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ In file included from graphics-ligand-view.hh:21, from graphics-ligand-view.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-superpose.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from meshed-generic-display-object.hh:30, from coot-render.hh:40, from graphics-ligand-view.hh:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gl-matrix.lo gl-matrix.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gl-matrix.cc -fPIC -DPIC -o .libs/gl-matrix.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtkglarea-rama-plot.lo gtkglarea-rama-plot.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtkglarea-rama-plot.cc -fPIC -DPIC -o .libs/gtkglarea-rama-plot.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-state.cc:34: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-state.cc:40: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-trackball.cc:57: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-manual.lo gtk-manual.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-manual.cc -fPIC -DPIC -o .libs/gtk-manual.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-widget-conversion-utils.lo gtk-widget-conversion-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-widget-conversion-utils.cc -fPIC -DPIC -o .libs/gtk-widget-conversion-utils.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-utils.lo gtk-utils.cc In file included from cc-interface.hh:37, from gtk-manual.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-utils.cc -fPIC -DPIC -o .libs/gtk-utils.o graphics-ligand-view.cc: In member function 'void graphics_ligand_bond::gl_bond_double_aromatic_bond(const lig_build::pos_t&, const lig_build::pos_t&, bool, bool)': graphics-ligand-view.cc:278:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 278 | make_double_aromatic_short_stick(pos_1, pos_2, shorten_first, shorten_second); | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from gtkglarea-rama-plot.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-ligand-mesh-molecule.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from gtk-widget-conversion-utils.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o HUDMesh.lo HUDMesh.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c HUDMesh.cc -fPIC -DPIC -o .libs/HUDMesh.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o HUDTextureMesh.lo HUDTextureMesh.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c HUDTextureMesh.cc -fPIC -DPIC -o .libs/HUDTextureMesh.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Instanced-Markup-Mesh.lo Instanced-Markup-Mesh.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from gtk-manual.cc:46: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Instanced-Markup-Mesh.cc -fPIC -DPIC -o .libs/Instanced-Markup-Mesh.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o init-from-gtkbuilder.lo init-from-gtkbuilder.cc In file included from Instanced-Markup-Mesh.cc:242: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c init-from-gtkbuilder.cc -fPIC -DPIC -o .libs/init-from-gtkbuilder.o gtkglarea-rama-plot.cc: In function 'void gtkgl_rama_on_glarea_render(GtkWidget*)': gtkglarea-rama-plot.cc:94:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 94 | gtk_widget_get_allocation(GTK_WIDGET(gtk_gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtkglarea-rama-plot.cc: In lambda function: gtkglarea-rama-plot.cc:130:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 130 | gtk_widget_get_allocation(gl_area, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtkglarea-rama-plot.cc: In static member function 'static void graphics_info_t::draw_rama_plots()': gtkglarea-rama-plot.cc:354:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 354 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o key-bindings.lo key-bindings.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o LinesMesh.lo LinesMesh.cc In file included from ../src/command-arg.hh:33, from ../src/graphics-info.h:66, from gtk-utils.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from ../src/molecule-class-info.h:85, from ../src/graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c key-bindings.cc -fPIC -DPIC -o .libs/key-bindings.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c LinesMesh.cc -fPIC -DPIC -o .libs/LinesMesh.o In file included from ../src/molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o LigandViewMesh.lo LigandViewMesh.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-callbacks-outer.lo lbg-callbacks-outer.cc In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.cc:35: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc: In function 'GtkWidget* create_symmetry_colour_selection_window()': gtk-manual.cc:97:49: warning: 'GtkWidget* gtk_color_chooser_dialog_new(const char*, GtkWindow*)' is deprecated [-Wdeprecated-declarations] 97 | colorseldialog = gtk_color_chooser_dialog_new("Symmetry Colour Selection", parent_window); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:84: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooserdialog.h:38:13: note: declared here 38 | GtkWidget * gtk_color_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc: In function 'void on_display_manager_selections_and_colours_combobox_changed(GtkComboBox*, gpointer)': gtk-manual.cc:320:51: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 320 | gchar *txt = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combo_box)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc: In function 'GtkWidget* selections_and_colours_combobox(int)': gtk-manual.cc:376:48: warning: 'GtkWidget* gtk_combo_box_text_new()' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 376 | GtkWidget *combobox = gtk_combo_box_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:38:15: note: declared here 38 | GtkWidget* gtk_combo_box_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:383:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 383 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Bonds (Colour by Atom)")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:384:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 384 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Bonds (Colour by Chain)")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:385:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 385 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Bonds (Colour by Molecule)")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:387:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 387 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("C-alphas/Backbone")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:388:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 388 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("CAs + Ligands")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:389:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 389 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("CAs+Ligs SecStr Col")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:390:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 390 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Jones' Rainbow")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:391:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 391 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by Sec. Str. Bonds")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:392:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 392 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by Atom - No Waters")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:393:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 393 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by B-factor - Backbone")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:394:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 394 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by B-factor - All")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:395:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 395 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by Occupancy")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:447:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 447 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), index); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c LigandViewMesh.cc -fPIC -DPIC -o .libs/LigandViewMesh.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-interface.lo lbg-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-callbacks-outer.cc -fPIC -DPIC -o .libs/lbg-callbacks-outer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Model.lo Model.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-interface.cc -fPIC -DPIC -o .libs/lbg-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Model.cc -fPIC -DPIC -o .libs/Model.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-a-dodec.lo make-a-dodec.cc In file included from ../src/graphics-ligand-mesh-molecule.hh:30, from ../src/graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-a-dodec.cc -fPIC -DPIC -o .libs/make-a-dodec.o ../src/graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': ../src/graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../src/gtk-utils.hh:26, from gtk-utils.cc:24: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from init-from-gtkbuilder.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o matrix-utils.lo matrix-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 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-DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh.lo Mesh.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh.cc -fPIC -DPIC -o .libs/Mesh.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-glTF.lo Mesh-from-glTF.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds-instanced.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-glTF.cc -fPIC -DPIC -o .libs/Mesh-from-glTF.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-graphical-bonds-instanced.cc -fPIC -DPIC -o .libs/Mesh-from-graphical-bonds-instanced.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-graphical-bonds.lo Mesh-from-graphical-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-graphical-bonds.cc -fPIC -DPIC -o .libs/Mesh-from-graphical-bonds.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from Mesh-from-glTF.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecular-mesh-generator.hh:44, from Model.hh:39, from Model.cc:37: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o meshed-generic-display-object.lo meshed-generic-display-object.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c meshed-generic-display-object.cc -fPIC -DPIC -o .libs/meshed-generic-display-object.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o model-molecule-meshes.lo model-molecule-meshes.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecular-mesh-generator.hh:44, from Mesh-from-graphical-bonds.cc:703: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c model-molecule-meshes.cc -fPIC -DPIC -o .libs/model-molecule-meshes.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info.lo molecule-class-info.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-alignment.lo molecule-class-info-alignment.cc In file included from command-arg.hh:33, from graphics-info.h:66, from lbg-interface.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info.cc -fPIC -DPIC -o .libs/molecule-class-info.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-alignment.cc -fPIC -DPIC -o .libs/molecule-class-info-alignment.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-analysis.lo molecule-class-info-analysis.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-analysis.cc -fPIC -DPIC -o .libs/molecule-class-info-analysis.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-bonds.lo molecule-class-info-bonds.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-build.lo molecule-class-info-build.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-bonds.cc -fPIC -DPIC -o .libs/molecule-class-info-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-build.cc -fPIC -DPIC -o .libs/molecule-class-info-build.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from meshed-generic-display-object.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-alignment.cc:27: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-analysis.cc:28: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-maps.lo molecule-class-info-maps.cc In file included from command-arg.hh:33, from graphics-info.h:66, from model-molecule-meshes.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-maps-2.lo molecule-class-info-maps-2.cc In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-maps.cc -fPIC -DPIC -o .libs/molecule-class-info-maps.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-bonds.cc:22: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-maps-2.cc -fPIC -DPIC -o .libs/molecule-class-info-maps-2.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info.cc:77: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-build.cc:36: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:39, from lbg-interface.cc:39: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info.cc:90: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-maps-2.cc:26: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151, from molecule-class-info-bonds.cc:24: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-maps.cc:56: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-molecular-symmetry.lo molecule-class-info-molecular-symmetry.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-kdc.lo molecule-class-info-kdc.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-dots.lo molecule-class-info-dots.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-molecular-symmetry.cc -fPIC -DPIC -o .libs/molecule-class-info-molecular-symmetry.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-kdc.cc -fPIC -DPIC -o .libs/molecule-class-info-kdc.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-dots.cc -fPIC -DPIC -o .libs/molecule-class-info-dots.o In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-dots-internal.lo molecule-class-info-dots-internal.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.hh:29, from molecule-class-info.cc:80: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-dots-internal.cc -fPIC -DPIC -o .libs/molecule-class-info-dots-internal.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-other.lo molecule-class-info-other.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-mutate.lo molecule-class-info-mutate.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-mutate.cc -fPIC -DPIC -o .libs/molecule-class-info-mutate.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-other.cc -fPIC -DPIC -o .libs/molecule-class-info-other.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-molecular-symmetry.cc:22: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-maps-2.cc:209: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-kdc.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151, from molecule-class-info-maps.cc:79: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-maps.cc:88: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from ../api/coot-molecule.hh:75, from molecule-class-info.cc:120: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-residues.lo molecule-class-info-residues.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-refine.lo molecule-class-info-refine.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-refine.cc -fPIC -DPIC -o .libs/molecule-class-info-refine.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-residues.cc -fPIC -DPIC -o .libs/molecule-class-info-residues.o In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-dots.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3906, from /usr/include/c++/14/math.h:36, from /usr/include/python3.13/Python.h:22, from molecule-class-info.cc:25: /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = glm::vec<3, float, glm::packed_highp>; _T2 = float&; typename __strip_reference_wrapper::type>::__type = glm::vec<3, float, glm::packed_highp>; typename decay<_Tp>::type = glm::vec<3, float, glm::packed_highp>; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': molecule-class-info.cc:10781:54: required from here 10781 | positions[i] = std::make_pair(glm::vec3(p.x(), p.y(), p.z()), f); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair, float>' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-kk.lo molecule-class-info-kk.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-kk.cc -fPIC -DPIC -o .libs/molecule-class-info-kk.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-other.cc:64: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-mutate.cc:52: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-surface.lo molecule-class-info-surface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-surface.cc -fPIC -DPIC -o .libs/molecule-class-info-surface.o In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-refine.cc:36: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-residues.cc:45: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-refine.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-other.cc:67: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-string.lo molecule-class-info-string.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-patterson.lo molecule-class-info-patterson.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-string.cc -fPIC -DPIC -o .libs/molecule-class-info-string.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-surface.cc:36: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-ncs.lo molecule-class-info-ncs.cc In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/contrib/function_object_bases.h:50, from /usr/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:28, from molecule-class-info.h:105: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-mutate.cc:58: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-kk.cc:25: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-patterson.cc -fPIC -DPIC -o .libs/molecule-class-info-patterson.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-ncs.cc -fPIC -DPIC -o .libs/molecule-class-info-ncs.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-string.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-surface.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-other.cc:84: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ molecule-class-info-mutate.cc: In member function 'void molecule_class_info_t::spin_search(clipper::Xmap&, const std::string&, int, const std::string&, const std::pair, std::__cxx11::basic_string >&, const std::vector >&)': molecule-class-info-mutate.cc:1349:47: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1349 | float angle = coot::util::spin_search(xmap, res, tors).first; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-ncs.cc:45: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-patterson.cc:45: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-ncs.cc:47: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule&) const': molecule-class-info-other.cc:3894:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3894 | molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule &a_rotamer) const { | ^~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-mol-tris.lo molecule-class-info-mol-tris.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-mol-tris.cc -fPIC -DPIC -o .libs/molecule-class-info-mol-tris.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-ncs.cc:49: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info-ncs.cc:51: graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_phi_psi(int) const': molecule-class-info-other.cc:3628:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3628 | molecule_class_info_t::get_phi_psi(int atom_index) const { | ^~~~~~~~~~~~~~~~~~~~~ molecule-class-info-other.cc: In member function 'std::pair > molecule_class_info_t::get_clash_score(const coot::minimol::molecule&, bool, int) const': molecule-class-info-other.cc:3805:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3805 | std::pair rotamer_info = get_minimol_pos(a_rotamer); | ^ In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/contrib/function_object_bases.h:50, from /usr/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:28, from molecule-class-info.h:105: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': molecule-class-info-patterson.cc:111:47: required from here 111 | clipper::data32::F_sigF f = fsig[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::I_sigI]': molecule-class-info-patterson.cc:196:24: required from here 196 | if (!isig[ih.hkl()].missing()) { | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::I_sigI' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ molecule-class-info-ncs.cc: In member function 'std::pair molecule_class_info_t::chain_centre_and_radius(const std::string&) const': molecule-class-info-ncs.cc:2623:77: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2623 | molecule_class_info_t::chain_centre_and_radius(const std::string &chain_id) const { | ^~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-widget-work.lo molecule-class-info-widget-work.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-geometry.lo molecule-class-info-geometry.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-widget-work.cc -fPIC -DPIC -o .libs/molecule-class-info-widget-work.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecular-mesh-generator.lo molecular-mesh-generator.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-geometry.cc -fPIC -DPIC -o .libs/molecule-class-info-geometry.o In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-mol-tris.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ molecule-class-info-patterson.cc: In member function 'bool molecule_class_info_t::make_patterson(std::string, std::string, std::string, float)': molecule-class-info-patterson.cc:111:54: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 111 | clipper::data32::F_sigF f = fsig[ih.hkl()]; | ^ molecule-class-info-patterson.cc: In member function 'bool molecule_class_info_t::make_patterson_using_intensities(std::string, std::string, std::string, float)': molecule-class-info-patterson.cc:196:31: note: parameter passing for argument of type 'clipper::datatypes::I_sigI' when C++17 is enabled changed to match C++14 in GCC 10.1 196 | if (!isig[ih.hkl()].missing()) { | ~~~~~~~~~~~~~^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecular-mesh-generator.cc -fPIC -DPIC -o .libs/molecular-mesh-generator.o In file included from molecular-mesh-generator.cc:43: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecular-mesh-generator-mol-tris.lo molecular-mesh-generator-mol-tris.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecular-mesh-generator-mol-tris.cc -fPIC -DPIC -o .libs/molecular-mesh-generator-mol-tris.o In file included from molecular-mesh-generator-mol-tris.cc:35: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine In file included from ../MoleculesToTriangles/CXXClasses/Renderer.h:28, from ../MoleculesToTriangles/CXXClasses/RendererGL.h:28: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o obj_loader.lo obj_loader.cc In file included from ../MoleculesToTriangles/CXXClasses/Renderer.h:28, from ../MoleculesToTriangles/CXXClasses/RendererGL.h:28: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c obj_loader.cc -fPIC -DPIC -o .libs/obj_loader.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-geometry.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-widget-work.cc:27: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_phi_psi(int) const': molecule-class-info-other.cc:3628:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3628 | molecule_class_info_t::get_phi_psi(int atom_index) const { | ^~~~~~~~~~~~~~~~~~~~~ molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule&) const': molecule-class-info-other.cc:3894:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3894 | molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule &a_rotamer) const { | ^~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pick.lo pick.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pick.cc -fPIC -DPIC -o .libs/pick.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o positron-plot.lo positron-plot.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c positron-plot.cc -fPIC -DPIC -o .libs/positron-plot.o In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o probe-clash-score.lo probe-clash-score.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c probe-clash-score.cc -fPIC -DPIC -o .libs/probe-clash-score.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:37, from positron-plot.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from pick.cc:38: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from probe-clash-score.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db-interface.lo protein_db-interface.cc positron-plot.cc: In member function 'std::pair plot_data_t::canvas_coords_to_positron_coords(double, double) const': positron-plot.cc:169:65: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 169 | canvas_coords_to_positron_coords(double cx, double cy) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pumpkin.lo pumpkin.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db-interface.cc -fPIC -DPIC -o .libs/protein_db-interface.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151, from molecule-class-info-widget-work.cc:530: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../mini-mol/mini-mol-utils.hh:22, from protein_db-interface.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o python-classes.lo python-classes.cc In file included from command-arg.hh:33, from graphics-info.h:66, from pick.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pumpkin.cc -fPIC -DPIC -o .libs/pumpkin.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ positron-plot.cc: In member function 'void plot_data_t::fill_plot_data_from_positron_metadata(const std::string&, const std::string&)': positron-plot.cc:259:81: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 259 | std::pair sane_min_max = get_sane_min_v_max_v(mdc.metadata); | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c python-classes.cc -fPIC -DPIC -o .libs/python-classes.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Particle.lo Particle.cc /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o read-phs.lo read-phs.c libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Particle.cc -fPIC -DPIC -o .libs/Particle.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-cif.lo read-cif.cc libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c read-phs.c -fPIC -DPIC -o .libs/read-phs.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-cif.cc -fPIC -DPIC -o .libs/read-cif.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from Particle.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama_mousey.lo rama_mousey.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama_plot_with_canvas.lo rama_plot_with_canvas.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" 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-I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rsr-functions.cc -fPIC -DPIC -o .libs/rsr-functions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" 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-I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c text-rendering-utils.cc -fPIC -DPIC -o .libs/text-rendering-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c restraints-editor.cc -fPIC -DPIC -o .libs/restraints-editor.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sdf-interface.lo sdf-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c screendump-tga.cc -fPIC -DPIC -o .libs/screendump-tga.o In file included from read-cif.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sdf-interface.cc -fPIC -DPIC -o .libs/sdf-interface.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sequence-view.lo sequence-view.cc /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o seq-view-interface.lo seq-view-interface.c /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Shader.lo Shader.cc libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c seq-view-interface.c -fPIC -DPIC -o .libs/seq-view-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-view.cc -fPIC -DPIC -o .libs/sequence-view.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sound.lo sound.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Shader.cc -fPIC -DPIC -o .libs/Shader.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from pick.cc:54: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sound.cc -fPIC -DPIC -o .libs/sound.o seq-view-interface.c: In function 'seq_lookup_widget': seq-view-interface.c:56:14: warning: unused variable 'parent' [-Wunused-variable] 56 | GtkWidget *parent = NULL, *found_widget = NULL; | ^~~~~~ seq-view-interface.c: In function 'create_sequence_view_dialog': seq-view-interface.c:90:3: warning: 'gtk_dialog_new' is deprecated [-Wdeprecated-declarations] 90 | sequence_view_dialog = gtk_dialog_new (); | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43, from seq-view-interface.c:46: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ seq-view-interface.c:98:3: warning: 'gtk_dialog_get_content_area' is deprecated [-Wdeprecated-declarations] 98 | dialog_vbox1 = gtk_dialog_get_content_area(GTK_DIALOG(sequence_view_dialog)); | ^~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ seq-view-interface.c:100:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 100 | gtk_widget_show (dialog_vbox1); | ^~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c:108:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 108 | gtk_widget_show (sequence_view_scrolledwindow); | ^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c:127:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 127 | gtk_widget_show (hbox1); | ^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c:143:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 143 | gtk_widget_show (sequence_view_close_button); | ^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c: In function 'on_sequence_view_close_button_clicked': seq-view-interface.c:157:15: warning: unused variable 'window' [-Wunused-variable] 157 | GtkWidget *window = seq_lookup_widget(GTK_WIDGET(button), "sequence_view_dialog"); | ^~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o startup-utils.lo startup-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o testing.lo testing.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c startup-utils.cc -fPIC -DPIC -o .libs/startup-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c testing.cc -fPIC -DPIC -o .libs/testing.o In file included from startup-utils.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o testing-2.lo testing-2.cc In file included from sound.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c testing-2.cc -fPIC -DPIC -o .libs/testing-2.o In file included from restraints-editor.cc:40: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from screendump-tga.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Texture.lo Texture.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o TextureMesh.lo TextureMesh.cc In file included from command-arg.hh:33, from graphics-info.h:66, from rsr-functions.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Texture.cc -fPIC -DPIC -o .libs/Texture.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c TextureMesh.cc -fPIC -DPIC -o .libs/TextureMesh.o In file included from command-arg.hh:33, from graphics-info.h:66, from text-rendering-utils.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from restraints-editor.cc:49: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from Texture.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from sound.cc:45: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../ideal/simple-restraint.hh:162, from testing-2.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from testing-2.cc:25: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from testing.hh:26, from testing-2.cc:28: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o tomo-tools.lo tomo-tools.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c tomo-tools.cc -fPIC -DPIC -o .libs/tomo-tools.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o trackball.lo trackball.c In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from sdf-interface.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c trackball.c -fPIC -DPIC -o .libs/trackball.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' trackball.c:262:17: warning: argument 1 of type 'float[4]' with mismatched bound [-Warray-parameter=] 262 | add_quats(float q1[4], float q2[4], float dest[4]) | ~~~~~~^~~~~ In file included from trackball.c:54: trackball.h:82:18: note: previously declared as 'float *' 82 | add_quats(float *q1, float *q2, float *dest); | ~~~~~~~^~ trackball.c:262:30: warning: argument 2 of type 'float[4]' with mismatched bound [-Warray-parameter=] 262 | add_quats(float q1[4], float q2[4], float dest[4]) | ~~~~~~^~~~~ trackball.h:82:29: note: previously declared as 'float *' 82 | add_quats(float *q1, float *q2, float *dest); | ~~~~~~~^~ trackball.c:262:43: warning: argument 3 of type 'float[4]' with mismatched bound [-Warray-parameter=] 262 | add_quats(float q1[4], float q2[4], float dest[4]) | ~~~~~~^~~~~~~ trackball.h:82:40: note: previously declared as 'float *' 82 | add_quats(float *q1, float *q2, float *dest); | ~~~~~~~^~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o user-mods.lo user-mods.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from TextureMesh.cc:48: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from tomo-tools.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from text-rendering-utils.cc:35: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from restraints-editor.cc:37: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c user-mods.cc -fPIC -DPIC -o .libs/user-mods.o restraints-editor.cc: In member function 'void coot::restraints_editor::fill_atom_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:126:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 126 | GtkTreeStore *tree_store_atoms = gtk_tree_store_new (4, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | // G_TYPE_FLOAT // for partial change | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | G_TYPE_INT // for formal change | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | ); | ~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:292: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:135:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 135 | gtk_tree_view_set_model(tv_atoms, GTK_TREE_MODEL(tree_store_atoms)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:138:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 138 | gtk_tree_store_append(tree_store_atoms, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:148:25: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 148 | gtk_tree_store_set(tree_store_atoms, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | 0, restraints.atom_info[i].atom_id_4c.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | 1, restraints.atom_info[i].type_symbol.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | 2, restraints.atom_info[i].type_energy.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | 3, fc, | ~~~~~~ 153 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'GtkCellRenderer* coot::restraints_editor::add_cell_renderer(GtkTreeView*, GtkTreeStore*, const std::string&, int, int)': restraints-editor.cc:172:62: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 172 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:173:55: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 173 | GtkTreeViewColumn *column = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:174:33: warning: 'void gtk_tree_view_column_set_title(GtkTreeViewColumn*, const char*)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 174 | gtk_tree_view_column_set_title(column, column_title.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:165:25: note: declared here 165 | void gtk_tree_view_column_set_title (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:175:30: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 175 | gtk_tree_view_append_column(tree_view, column); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:176:34: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 176 | gtk_tree_view_column_pack_start(column, cell_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:177:37: warning: 'void gtk_tree_view_column_add_attribute(GtkTreeViewColumn*, GtkCellRenderer*, const char*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 177 | gtk_tree_view_column_add_attribute(column, cell_renderer, "text", pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:101:25: note: declared here 101 | void gtk_tree_view_column_add_attribute (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:180:42: warning: 'void gtk_tree_view_column_set_sort_column_id(GtkTreeViewColumn*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 180 | gtk_tree_view_column_set_sort_column_id(column, pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:201:25: note: declared here 201 | void gtk_tree_view_column_set_sort_column_id (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In static member function 'static void coot::restraints_editor::cell_edited_callback(GtkCellRendererText*, gchar*, gchar*, gpointer)': restraints-editor.cc:214:53: warning: 'GtkTreePath* gtk_tree_path_new_from_string(const char*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 214 | GtkTreePath *path = gtk_tree_path_new_from_string(path_string); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:201:14: note: declared here 201 | GtkTreePath *gtk_tree_path_new_from_string (const char *path); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:221:28: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 221 | gtk_tree_model_get_iter (model, &iter, path); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:228:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 228 | gtk_tree_store_set (GTK_TREE_STORE (model), &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 | column, f, | ~~~~~~~~~~ 230 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:236:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 236 | gtk_tree_store_set (GTK_TREE_STORE (model), &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 | column, ii, | ~~~~~~~~~~~ 238 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:243:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 243 | gtk_tree_store_set (GTK_TREE_STORE (model), &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 | column, new_text, | ~~~~~~~~~~~~~~~~~ 245 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_angle_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:346:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 346 | gtk_tree_store_new (5, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | G_TYPE_FLOAT, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:353:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 353 | gtk_tree_view_set_model(tv_angles, GTK_TREE_MODEL(tree_store_angles)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:356:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 356 | gtk_tree_store_append(tree_store_angles, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:357:25: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 357 | gtk_tree_store_set(tree_store_angles, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 | 0, restraints.angle_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | 1, restraints.angle_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 | 2, restraints.angle_restraint[i].atom_id_3_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 | 3, restraints.angle_restraint[i].angle(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 | 4, restraints.angle_restraint[i].esd(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_info_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:383:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 383 | gtk_tree_store_new (7, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 | G_TYPE_INT, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:391:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 391 | gtk_tree_view_set_model(tv_info, GTK_TREE_MODEL(tree_store_info)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:402:25: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 402 | gtk_tree_store_append(tree_store_info, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:403:22: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 403 | gtk_tree_store_set(tree_store_info, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 | 0, restraints.residue_info.comp_id.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 | 1, tlc.c_str(), | ~~~~~~~~~~~~~~~ 406 | 2, restraints.residue_info.name.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 | 3, restraints.residue_info.group.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 | 4, restraints.residue_info.number_atoms_all, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 | 5, restraints.residue_info.number_atoms_nh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 | 6, restraints.residue_info.description_level.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_bond_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:430:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 430 | GtkTreeStore *tree_store_bonds = gtk_tree_store_new (5, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 | G_TYPE_FLOAT, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:436:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 436 | gtk_tree_view_set_model(tv_bonds, GTK_TREE_MODEL(tree_store_bonds)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:439:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 439 | gtk_tree_store_append(tree_store_bonds, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:456:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 456 | gtk_tree_store_set(tree_store_bonds, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 | 0, restraints.bond_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 | 1, restraints.bond_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | 2, restraints.bond_restraint[i].type().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | 3, value_dist, | ~~~~~~~~~~~~~~ 461 | 4, value_esd, | ~~~~~~~~~~~~~ 462 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_torsion_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:493:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 493 | gtk_tree_store_new (8, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 494 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 | G_TYPE_FLOAT, G_TYPE_FLOAT, G_TYPE_INT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:500:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 500 | gtk_tree_view_set_model(tv_torsions, GTK_TREE_MODEL(tree_store_torsions)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:503:29: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 503 | gtk_tree_store_append(tree_store_torsions, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:504:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 504 | gtk_tree_store_set(tree_store_torsions, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 | 0, restraints.torsion_restraint[i].id().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 | 1, restraints.torsion_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 | 2, restraints.torsion_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 | 3, restraints.torsion_restraint[i].atom_id_3_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | 4, restraints.torsion_restraint[i].atom_id_4_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 | 5, restraints.torsion_restraint[i].angle(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 | 6, restraints.torsion_restraint[i].esd(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | coot::restraints_editor::TORSION_COL_PERIODICTY, restraints.torsion_restraint[i].periodicity(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_chiral_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:536:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 536 | gtk_tree_store_new (6, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 537 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 | G_TYPE_STRING); | ~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:543:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 543 | gtk_tree_view_set_model(tv_chirals, GTK_TREE_MODEL(tree_store_chirals)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:548:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 548 | gtk_tree_store_append(tree_store_chirals, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:549:25: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 549 | gtk_tree_store_set(tree_store_chirals, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | 0, restraints.chiral_restraint[i].Chiral_Id().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 | 1, restraints.chiral_restraint[i].atom_id_c_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 | 2, restraints.chiral_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 | 3, restraints.chiral_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 | 4, restraints.chiral_restraint[i].atom_id_3_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 | coot::restraints_editor::CHIRAL_COL_SIGN, chiral_volume_string.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_plane_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:592:34: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 592 | gtk_tree_view_set_model(tv_planes, GTK_TREE_MODEL(tree_store_planes)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:596:35: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 596 | gtk_tree_store_append(tree_store_planes, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:599:32: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 599 | gtk_tree_store_set(tree_store_planes, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 | esd_col_no, restraints.plane_restraint[iplane].dist_esd(0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:602:32: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 602 | gtk_tree_store_set(tree_store_planes, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 | 0, restraints.plane_restraint[iplane].plane_id.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:606:35: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 606 | gtk_tree_store_set(tree_store_planes, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 | iat+1, restraints.plane_restraint[iplane][iat].first.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'GtkTreeStore* coot::restraints_editor::make_tree_store_for_planes(int)': restraints-editor.cc:637:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 637 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 638 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:642:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 642 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 643 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:647:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 647 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 648 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 650 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:653:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 653 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 654 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:659:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 659 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 660 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:665:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 665 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 666 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:671:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 671 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 672 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 675 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:678:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 678 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 679 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:685:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 685 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 686 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:692:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 692 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 693 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:699:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 699 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 700 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 704 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:707:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 707 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 708 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:715:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 715 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 716 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:723:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 723 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 724 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:731:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 731 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 732 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 737 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:740:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 740 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 741 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:749:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 749 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 750 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:758:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 758 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 759 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:767:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 767 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 768 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 774 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:777:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 777 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 778 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:787:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 787 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 788 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:797:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 797 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 798 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:807:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 807 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 808 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 815 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_bond_restraints() const': restraints-editor.cc:857:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 857 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_bonds.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:868:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 868 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_bonds.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:882:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 882 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_bonds.store), &iter, col_no, &f, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:890:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 890 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_bonds.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_angle_restraints() const': restraints-editor.cc:912:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 912 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_angles.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:923:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 923 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_angles.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:934:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 934 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_angles.store), &iter, col_no, &f, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:942:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 942 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_angles.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_torsion_restraints() const': restraints-editor.cc:970:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 970 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_torsions.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:984:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 984 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_torsions.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:999:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 999 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_torsions.store), &iter, col_no, &f, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1008:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1008 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_torsions.store), &iter, col_no, &ii, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1013:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1013 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_torsions.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_plane_restraints() const': restraints-editor.cc:1050:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1050 | bool b = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_planes.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1061:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1061 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_planes.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1072:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1072 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_planes.store), &iter, col_no, &val, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1094:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1094 | b = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_planes.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_chiral_restraints() const': restraints-editor.cc:1105:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1105 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_chirals.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1117:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1117 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_chirals.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1134:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1134 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_chirals.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::pair > coot::restraints_editor::get_atom_info() const': restraints-editor.cc:1178:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1178 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_atoms.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1189:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1189 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_atoms.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1202:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1202 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_atoms.store), &iter, col_no, &i, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1209:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1209 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_atoms.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::pair coot::restraints_editor::get_residue_info() const': restraints-editor.cc:1251:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1251 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_info.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1265:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1265 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_info.store), &iter, col_no, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1280:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1280 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_info.store), &iter, col_no, &ii, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In function 'void restraints_editor_save_restraint_by_widget(GtkWidget*)': restraints-editor.cc:1368:40: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 1368 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(ww), filename.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In function 'void save_monomer_restraints_by_widget(GtkDialog*)': restraints-editor.cc:1386:43: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 1386 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(chooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::delete_restraint(GtkWidget*)': restraints-editor.cc:1423:69: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 1423 | GtkTreeSelection *tree_selection = gtk_tree_view_get_selection(tree_view); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1427:44: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 1427 | gtk_tree_selection_get_selected(tree_selection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:290: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1428:34: warning: 'gboolean gtk_tree_store_remove(GtkTreeStore*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 1428 | gtk_tree_store_remove(tree_store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:95:15: note: declared here 95 | gboolean gtk_tree_store_remove (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::add_restraint(GtkWidget*)': restraints-editor.cc:1456:69: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 1456 | GtkTreeSelection *tree_selection = gtk_tree_view_get_selection(tree_view); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1460:44: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 1460 | gtk_tree_selection_get_selected(tree_selection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1464:34: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 1464 | gtk_tree_store_append(tree_store, &iter, parent); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from testing.hh:26, from testing.cc:33: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from testing.hh:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from user-mods.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o xmap-utils.lo xmap-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-plot-phi-psi.lo rama-plot-phi-psi.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from testing.cc:50: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from testing.cc:60: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c xmap-utils.cc -fPIC -DPIC -o .libs/xmap-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from tomo-tools.cc:36: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o spherical-density.lo spherical-density.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c spherical-density.cc -fPIC -DPIC -o .libs/spherical-density.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from testing.cc:64: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o single-map-properties-dialog.lo single-map-properties-dialog.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c single-map-properties-dialog.cc -fPIC -DPIC -o .libs/single-map-properties-dialog.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o validation.lo validation.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o view.lo view.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation.cc -fPIC -DPIC -o .libs/validation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c view.cc -fPIC -DPIC -o .libs/view.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o widget-from-builder.lo widget-from-builder.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c widget-from-builder.cc -fPIC -DPIC -o .libs/widget-from-builder.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from single-map-properties-dialog.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from tomo-tools.cc:139: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/bash ../src/post-process-coot-wrap-guile.sh coot_wrap_guile_pre.cc coot_wrap_guile.cc adding gtk2 and guile ifdefs from coot_wrap_guile_pre.cc coot_wrap_guile.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_wrap_guile.lo coot_wrap_guile.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_wrap_guile.cc -fPIC -DPIC -o .libs/coot_wrap_guile.o In file included from command-arg.hh:33, from graphics-info.h:66, from spherical-density.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from validation.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from single-map-properties-dialog.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from view.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from widget-from-builder.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from validation.cc:30: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3906, from /usr/include/c++/14/math.h:36, from /usr/include/python3.13/Python.h:22, from sdf-interface.cc:23: In constructor 'constexpr std::pair<_T1, _T2>::pair(_U1&&, _U2&&) [with _U1 = bool; _U2 = clipper::Coord_orth&; typename std::enable_if<(std::_PCC::_MoveConstructiblePair<_U1, _U2>() && std::_PCC::_ImplicitlyMoveConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)' at sdf-interface.cc:413:56: /usr/include/c++/14/bits/stl_pair.h:882:42: warning: 'v' may be used uninitialized [-Wmaybe-uninitialized] 882 | : first(std::forward<_U1>(__x)), second(std::forward<_U2>(__y)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sdf-interface.cc: In function 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)': sdf-interface.cc:403:24: note: 'v' declared here 403 | clipper::Coord_orth v; | ^ testing.cc: In function 'int test_ligand_conformer_torsion_angles()': testing.cc:1631:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1631 | std::pair p = conformer_info[i].get_set_and_real_torsions(itor); | ^ testing.cc: In function 'int test_lsq_plane()': testing.cc:2629:65: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2629 | std::pair d = coot::lsq_plane_deviation(v, pt); | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from spherical-density.cc:32: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from single-map-properties-dialog.hh:32, from single-map-properties-dialog.cc:31: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ single-map-properties-dialog.cc: In function 'void on_colour_chooser_dialog_response(GtkDialog*, int)': single-map-properties-dialog.cc:364:33: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 364 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(dialog), &color); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ single-map-properties-dialog.cc: In function 'void show_map_colour_selector_with_parent(int, GtkWidget*)': single-map-properties-dialog.cc:385:70: warning: 'GtkWidget* gtk_color_chooser_dialog_new(const char*, GtkWindow*)' is deprecated [-Wdeprecated-declarations] 385 | GtkWidget *colour_chooser_dialog = gtk_color_chooser_dialog_new("Test", GTK_WINDOW(parent_window)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:84: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooserdialog.h:38:13: note: declared here 38 | GtkWidget * gtk_color_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ single-map-properties-dialog.cc:392:33: warning: 'void gtk_color_chooser_set_rgba(GtkColorChooser*, const GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 392 | gtk_color_chooser_set_rgba(GTK_COLOR_CHOOSER(colour_chooser_dialog), map_colour_p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:69:10: note: declared here 69 | void gtk_color_chooser_set_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from widget-from-builder.hh:31, from widget-from-builder.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ testing.cc: In function 'int test_ligand_conformer_torsion_angles()': testing.cc:1596:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1596 | int test_ligand_conformer_torsion_angles() { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ testing.cc: In function 'int test_lsq_plane()': testing.cc:2615:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2615 | int test_lsq_plane() { | ^~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootsumo.la -rpath /usr/lib/aarch64-linux-gnu init_coot_as_python_module.lo boids.lo boot-python.lo atom-overlaps.lo git-revision-count.lo scm-boot-guile.lo c-interface-analysis.lo c-interface-bonds.lo c-interface-build.lo c-interface-build-morph.lo c-interface-build-main-chain.lo c-interface-build-side-chain.lo c-interface-build-symmetry.lo c-interface-build-gui.lo c-interface-curlew.lo c-interface-database.lo c-interface-gui.lo c-interface-gtk2.lo c-interface-info.lo c-interface-kk.lo c-interface-image.lo c-interface-ligands-gui.lo c-interface-ligands.lo c-interface-maps.lo c-interface-mmdb.lo c-interface-mogul.lo c-interface-mogul-scripting.lo c-interface-mutate.lo c-interface-ncs.lo c-interface-network.lo c-interface-nucleotides.lo c-interface-pisa.lo c-interface-pisa-gui.lo c-interface-preferences.lo c-interface-python.lo c-interface-refine.lo c-interface-residues.lo c-interface-refmac.lo simple-refmac.lo c-interface-scm.lo c-interface-sequence.lo c-interface-sfs.lo c-interface-sharpen.lo c-interface-superpose.lo c-interface-validate.lo c-interface-view.lo c-interface-widgets.lo c-interface-waters.lo c-interface-waters-gui.lo c-interface.lo c-interface-test.lo cc-interface-alignment.lo cc-interface-graphics.lo cc-interface-merge.lo cc-interface-molecular-representation.lo cc-interface-molecular-symmetry.lo cc-interface-scripting.lo cc-interface-map-utils.lo cc-interface-png.lo cc-interface-user-defined-atom-colours.lo cfc.lo change-dir.lo cmtz-interface.lo command-line.lo command-line-extern.lo coot-application.lo coot-colour.lo coot-align.lo coot-nomenclature.lo coot-glue-gtk2.lo coot-glue-gtk2-python.lo coot-hydrogens.lo coot-phi-psi.lo coot_pythonmodule.lo coot-setup-python.lo coot_wrap_guile.lo curlew-gtk4.lo draw.lo graphics-info-tick-function.lo drag-and-drop.lo draw-generic-display-objects.lo dynamic-validation.lo eyes.lo event-controller-callbacks.lo fit-loop-gui.lo flev.lo framebuffer.lo old-generic-display-object.lo gaussian-surface.lo generic-objects.lo geometry-graphs.lo get-residue.lo get-monomer.lo gl-rama-plot.lo globjects.lo globularize.lo graphics-info.lo graphics-info-defines.lo graphics-info-defines-gtk4.lo graphics-info-draw.lo graphics-info-draw-models.lo graphics-info-graphs.lo graphics-info-gui.lo graphics-info-init.lo graphics-info-intermediate.lo graphics-info-modelling.lo graphics-info-navigation.lo graphics-info-navigation-gtk2.lo graphics-info-preferences.lo graphics-info-network.lo graphics-info-mutate.lo graphics-info-lsq.lo graphics-info-opengl.lo graphics-info-pick.lo graphics-info-refmac.lo graphics-info-render.lo graphics-info-render-scene.lo graphics-info-residues.lo graphics-info-refine.lo graphics-info-scripting.lo graphics-info-state.lo graphics-info-statics.lo graphics-info-superpose.lo graphics-info-trackball.lo graphics-ligand-view.lo graphics-ligand-mesh-molecule.lo gl-matrix.lo gtkglarea-rama-plot.lo gtk-manual.lo gtk-widget-conversion-utils.lo gtk-utils.lo HUDMesh.lo HUDTextureMesh.lo Instanced-Markup-Mesh.lo init-from-gtkbuilder.lo key-bindings.lo LinesMesh.lo LigandViewMesh.lo lbg-callbacks-outer.lo lbg-interface.lo Model.lo make-a-dodec.lo matrix-utils.lo Mesh.lo Mesh-from-glTF.lo Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds.lo meshed-generic-display-object.lo model-molecule-meshes.lo molecule-class-info.lo molecule-class-info-alignment.lo molecule-class-info-analysis.lo molecule-class-info-bonds.lo molecule-class-info-build.lo molecule-class-info-maps.lo molecule-class-info-maps-2.lo molecule-class-info-molecular-symmetry.lo molecule-class-info-kdc.lo molecule-class-info-dots.lo molecule-class-info-dots-internal.lo molecule-class-info-other.lo molecule-class-info-mutate.lo molecule-class-info-residues.lo molecule-class-info-refine.lo molecule-class-info-kk.lo molecule-class-info-surface.lo molecule-class-info-string.lo molecule-class-info-patterson.lo molecule-class-info-ncs.lo molecule-class-info-mol-tris.lo molecule-class-info-widget-work.lo molecule-class-info-geometry.lo molecular-mesh-generator.lo molecular-mesh-generator-mol-tris.lo obj_loader.lo pick.lo positron-plot.lo probe-clash-score.lo protein_db-interface.lo pumpkin.lo python-classes.lo Particle.lo read-phs.lo read-cif.lo rama_mousey.lo rama_plot_with_canvas.lo text-rendering-utils.lo restraints-editor.lo rsr-functions.lo screendump-tga.lo sdf-interface.lo sequence-view.lo seq-view-interface.lo Shader.lo sound.lo startup-utils.lo testing.lo testing-2.lo Texture.lo TextureMesh.lo tomo-tools.lo trackball.lo user-mods.lo xmap-utils.lo rama-plot-phi-psi.lo spherical-density.lo single-map-properties-dialog.lo validation.lo view.lo widget-from-builder.lo -fopenmp ../api/libcoot-api.la ../pli/libcoot-pli.la ../layla/libcoot-layla.la ../ligand/libcoot-res-tracer.la ../ligand/libcoot-ligand.la ../validation-graphs/libcoot-validation-graphs.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../compat/libcoot-compat.la -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lm -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lfreetype -lsqlite3 -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o 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.libs/c-interface-residues.o .libs/c-interface-refmac.o .libs/simple-refmac.o .libs/c-interface-scm.o .libs/c-interface-sequence.o .libs/c-interface-sfs.o .libs/c-interface-sharpen.o .libs/c-interface-superpose.o .libs/c-interface-validate.o .libs/c-interface-view.o .libs/c-interface-widgets.o .libs/c-interface-waters.o .libs/c-interface-waters-gui.o .libs/c-interface.o .libs/c-interface-test.o .libs/cc-interface-alignment.o .libs/cc-interface-graphics.o .libs/cc-interface-merge.o .libs/cc-interface-molecular-representation.o .libs/cc-interface-molecular-symmetry.o .libs/cc-interface-scripting.o .libs/cc-interface-map-utils.o .libs/cc-interface-png.o .libs/cc-interface-user-defined-atom-colours.o .libs/cfc.o .libs/change-dir.o .libs/cmtz-interface.o .libs/command-line.o .libs/command-line-extern.o .libs/coot-application.o .libs/coot-colour.o .libs/coot-align.o .libs/coot-nomenclature.o .libs/coot-glue-gtk2.o .libs/coot-glue-gtk2-python.o .libs/coot-hydrogens.o .libs/coot-phi-psi.o .libs/coot_pythonmodule.o .libs/coot-setup-python.o .libs/coot_wrap_guile.o .libs/curlew-gtk4.o .libs/draw.o .libs/graphics-info-tick-function.o .libs/drag-and-drop.o .libs/draw-generic-display-objects.o .libs/dynamic-validation.o .libs/eyes.o .libs/event-controller-callbacks.o .libs/fit-loop-gui.o .libs/flev.o .libs/framebuffer.o .libs/old-generic-display-object.o .libs/gaussian-surface.o .libs/generic-objects.o .libs/geometry-graphs.o .libs/get-residue.o .libs/get-monomer.o .libs/gl-rama-plot.o .libs/globjects.o .libs/globularize.o .libs/graphics-info.o .libs/graphics-info-defines.o .libs/graphics-info-defines-gtk4.o .libs/graphics-info-draw.o .libs/graphics-info-draw-models.o .libs/graphics-info-graphs.o .libs/graphics-info-gui.o .libs/graphics-info-init.o .libs/graphics-info-intermediate.o .libs/graphics-info-modelling.o .libs/graphics-info-navigation.o .libs/graphics-info-navigation-gtk2.o .libs/graphics-info-preferences.o .libs/graphics-info-network.o .libs/graphics-info-mutate.o 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.libs/probe-clash-score.o .libs/protein_db-interface.o .libs/pumpkin.o .libs/python-classes.o .libs/Particle.o .libs/read-phs.o .libs/read-cif.o .libs/rama_mousey.o .libs/rama_plot_with_canvas.o .libs/text-rendering-utils.o .libs/restraints-editor.o .libs/rsr-functions.o .libs/screendump-tga.o .libs/sdf-interface.o .libs/sequence-view.o .libs/seq-view-interface.o .libs/Shader.o .libs/sound.o .libs/startup-utils.o .libs/testing.o .libs/testing-2.o .libs/Texture.o .libs/TextureMesh.o .libs/tomo-tools.o .libs/trackball.o .libs/user-mods.o .libs/xmap-utils.o .libs/rama-plot-phi-psi.o .libs/spherical-density.o .libs/single-map-properties-dialog.o .libs/validation.o .libs/view.o .libs/widget-from-builder.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/api/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/layla/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/density-contour/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/build/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/skeleton/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/angles/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/high-res/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/protein_db/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootilus/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/compat/.libs ../api/.libs/libcoot-api.so ../pli/.libs/libcoot-pli.so ../layla/.libs/libcoot-layla.so ../ligand/.libs/libcoot-res-tracer.so ../ligand/.libs/libcoot-ligand.so ../validation-graphs/.libs/libcoot-validation-graphs.so ../lidia-core/.libs/libcoot-lidia-core.so ../density-contour/.libs/libcoot-isosurface.so ../build/.libs/libcoot-cabuild.so ../skeleton/.libs/libcoot-skeleton.so ../angles/.libs/libcoot-AngleInfo.so ../db-main/.libs/libcoot-db-main.so ../high-res/.libs/libcoot-high-res.so ../ideal/.libs/libcoot-ideal.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../protein_db/.libs/libcoot-protein-db.so ../cootilus/.libs/libcootilus.so ../cootaneer/.libs/libcootaneer.so ../MoleculesToTriangles/CXXClasses/.libs/libMoleculesToTrianglesCXXClasses.so ../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so ../compat/.libs/libcoot-compat.so -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lfreetype -lsqlite3 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -fopenmp -Wl,-soname -Wl,libcootsumo.so.0 -o .libs/libcootsumo.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcootsumo.so.0" && ln -s "libcootsumo.so.0.0.0" "libcootsumo.so.0") libtool: link: (cd ".libs" && rm -f "libcootsumo.so" && ln -s "libcootsumo.so.0.0.0" "libcootsumo.so") libtool: link: ( cd ".libs" && rm -f "libcootsumo.la" && ln -s "../libcootsumo.la" "libcootsumo.la" ) make all-am make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main.o main.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks.o glade-callbacks.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks-main-window.o glade-callbacks-main-window.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks-preferences.o glade-callbacks-preferences.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks-shader-settings.o glade-callbacks-shader-settings.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o new-startup.o new-startup.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o setup-gui-components.o setup-gui-components.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o create-menu-item-actions.o create-menu-item-actions.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o density-score-by-residue-src.o density-score-by-residue-src.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot.lo coot.cc swig -o coot_wrap_python_pre.cc -DUSE_MOLECULES_TO_TRIANGLES -DCOOT_USE_GTK2_INTERFACE -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/python3.13 -DUSE_PYTHON -DUSE_LIBCURL -I../src -I.. -shadow -python -c++ ../src/coot.i libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot.cc -fPIC -DPIC -o .libs/coot.o In file included from ../coot-utils/coot-map-utils.hh:33, from density-score-by-residue-src.cc:50: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from density-score-by-residue-src.cc:52: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:37, from glade-callbacks-shader-settings.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from glade-callbacks-preferences.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ glade-callbacks-preferences.cc: In function 'void on_preferences_font_size_others_radiobutton_toggled(GtkToggleButton*, gpointer)': glade-callbacks-preferences.cc:1065:43: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1065 | gint ival = gtk_combo_box_get_active(GTK_COMBO_BOX(w)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94, from glade-callbacks-preferences.cc:28: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_font_size_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks-preferences.cc:1080:39: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1080 | gint ival = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_font_colour_own_radiobutton_toggled(GtkCheckButton*, gpointer)': glade-callbacks-preferences.cc:1119:36: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 1119 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(colorbutton), &col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_font_colorbutton_color_set(GtkColorButton*, gpointer)': glade-callbacks-preferences.cc:1135:30: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 1135 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(colorbutton), &col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_bond_width_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks-preferences.cc:1196:33: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1196 | val = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, from glade-callbacks.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from main.cc:75: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from glade-callbacks-main-window.cc:56: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-density-score-by-residue-bin density-score-by-residue-src.o libcootsumo.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../ligand/libcoot-ligand.la ../analysis/libcoot-analysis.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm In file included from command-arg.hh:33, from graphics-info.h:66, from create-menu-item-actions.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from glade-callbacks.cc:53: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from setup-gui-components.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from glade-callbacks-main-window.cc:57: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from main.cc:81: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../src/post-process-coot-wrap-python.sh gtk2 coot_wrap_python_pre.cc coot_wrap_python.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_wrap_python.lo coot_wrap_python.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_wrap_python.cc -fPIC -DPIC -o .libs/coot_wrap_python.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from new-startup.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from create-menu-item-actions.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from glade-callbacks.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from main.cc:23: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from create-menu-item-actions.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ glade-callbacks.cc: In function 'void on_save_coords_filechooser_dialog_response(GtkDialog*, int)': glade-callbacks.cc:868:48: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 868 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_save_coords_dialog_save_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:915:67: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 915 | GtkWidget *file_chooser_dialog = gtk_file_chooser_dialog_new("Save Coordinates", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 916 | parent_window, | ~~~~~~~~~~~~~~ 917 | action, | ~~~~~~~ 918 | ("_Cancel"), | ~~~~~~~~~~~~ 919 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 920 | ("_Save"), | ~~~~~~~~~~ 921 | GTK_RESPONSE_YES, | ~~~~~~~~~~~~~~~~~ 922 | NULL); | ~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:131: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from glade-callbacks-main-window.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from main.cc:96: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ create-menu-item-actions.cc: In function 'void on_coords_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:58:50: warning: 'const char* gtk_file_chooser_get_choice(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 58 | const char *r = gtk_file_chooser_get_choice(GTK_FILE_CHOOSER(dialog), "recentering"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:182:22: note: declared here 182 | const char * gtk_file_chooser_get_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:68:50: warning: 'GListModel* gtk_file_chooser_get_files(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 68 | GListModel *lm = gtk_file_chooser_get_files(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:125:22: note: declared here 125 | GListModel * gtk_file_chooser_get_files (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_dataset_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:98:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 98 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_map_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:128:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 128 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:131:65: warning: 'const char* gtk_file_chooser_get_choice(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 131 | const char *response_id_cstr = gtk_file_chooser_get_choice(GTK_FILE_CHOOSER(dialog), "is-diff-map"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:182:22: note: declared here 182 | const char * gtk_file_chooser_get_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void open_coordinates_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:148:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 148 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 149 | parent_window, | ~~~~~~~~~~~~~~ 150 | action, | ~~~~~~~ 151 | ("_Cancel"), | ~~~~~~~~~~~~ 152 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 153 | ("_Open"), | ~~~~~~~~~~ 154 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 155 | NULL); | ~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:131: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:156:40: warning: 'void gtk_file_chooser_set_select_multiple(GtkFileChooser*, gboolean)' is deprecated [-Wdeprecated-declarations] 156 | gtk_file_chooser_set_select_multiple(GTK_FILE_CHOOSER(dialog), TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:98:22: note: declared here 98 | void gtk_file_chooser_set_select_multiple (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:173:31: warning: 'void gtk_file_chooser_add_choice(GtkFileChooser*, const char*, const char*, const char**, const char**)' is deprecated [-Wdeprecated-declarations] 173 | gtk_file_chooser_add_choice(GTK_FILE_CHOOSER(dialog), "recentering", "Recentre", options, labels); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:169:22: note: declared here 169 | void gtk_file_chooser_add_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void open_dataset_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:199:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 199 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | ("_Cancel"), GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ("_Open"), GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:207:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 207 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_phs_coordinates_filechooserdialog1_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:5193:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 5193 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(phs_filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void auto_open_mtz_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:234:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 234 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 | ("_Cancel"), GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 | ("_Open"), GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:243:42: warning: 'gboolean gtk_file_chooser_set_current_folder(GtkFileChooser*, GFile*, GError**)' is deprecated [-Wdeprecated-declarations] 243 | gtk_file_chooser_set_current_folder(GTK_FILE_CHOOSER(dialog), f_dir, &error); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:127:22: note: declared here 127 | gboolean gtk_file_chooser_set_current_folder (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:250:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 250 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void open_map_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:269:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 269 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 270 | parent_window, | ~~~~~~~~~~~~~~ 271 | action, | ~~~~~~~ 272 | ("_Cancel"), | ~~~~~~~~~~~~ 273 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 274 | ("_Open"), | ~~~~~~~~~~ 275 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 276 | NULL); | ~~~~~ glade-callbacks.cc: In function 'void on_screendump_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:5301:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 5301 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(file_chooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:280:31: warning: 'void gtk_file_chooser_add_choice(GtkFileChooser*, const char*, const char*, const char**, const char**)' is deprecated [-Wdeprecated-declarations] 280 | gtk_file_chooser_add_choice(GTK_FILE_CHOOSER(dialog), "is-diff-map", "Is Difference Map", NULL, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:169:22: note: declared here 169 | void gtk_file_chooser_add_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:289:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 289 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_residue_editor_select_monomer_type_ok_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:5473:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 5473 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combo_box)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_cif_dictionary_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:349:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 349 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:354:50: warning: 'const char* gtk_file_chooser_get_choice(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 354 | const char *r = gtk_file_chooser_get_choice(GTK_FILE_CHOOSER(dialog), "create-molecule"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:182:22: note: declared here 182 | const char * gtk_file_chooser_get_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void import_cif_dictionary_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:375:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 375 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 | ("_Cancel"), GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 | ("_Open"), GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:382:31: warning: 'void gtk_file_chooser_add_choice(GtkFileChooser*, const char*, const char*, const char**, const char**)' is deprecated [-Wdeprecated-declarations] 382 | gtk_file_chooser_add_choice(GTK_FILE_CHOOSER(dialog), "create-molecule", "Create Molecule", options, labels); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:169:22: note: declared here 169 | void gtk_file_chooser_add_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:387:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 387 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_export_map_file_chooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6044:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6044 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_geman_mcclure_alpha_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6231:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6231 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_lennard_jones_epsilon_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6247:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6247 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6248:50: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6248 | int active_item_idx = gtk_combo_box_get_active(combobox); // save it for set active item next time | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_rama_restraints_weight_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6258:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6258 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6259:50: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6259 | int active_item_idx = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_torsion_weight_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6270:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6270 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6271:50: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6271 | int active_item_idx = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_overall_weight_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6282:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6282 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_simple_refmac_mtz_file_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:6480:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 6480 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(w), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_simple_refmac_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6494:43: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6494 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_save_state_dialog_response(GtkDialog*, int)': create-menu-item-actions.cc:579:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 579 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6514:42: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6514 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(file_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6515:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6515 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(file_combobox), file_name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void save_state_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:600:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 600 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Save State", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 601 | parent_window, | ~~~~~~~~~~~~~~ 602 | action, | ~~~~~~~ 603 | ("Cancel"), | ~~~~~~~~~~~ 604 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 605 | ("Save"), | ~~~~~~~~~ 606 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 607 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6516:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6516 | gtk_combo_box_set_active(GTK_COMBO_BOX(file_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:611:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 611 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_save_views_dialog_response(GtkDialog*, int)': create-menu-item-actions.cc:623:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 623 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_save_views_clicked(GtkButton*, gpointer)': create-menu-item-actions.cc:636:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 636 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Save Views", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 637 | parent_window, | ~~~~~~~~~~~~~~ 638 | action, | ~~~~~~~ 639 | ("Cancel"), | ~~~~~~~~~~~ 640 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 641 | ("Save"), | ~~~~~~~~~ 642 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 643 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:647:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 647 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_cif_dictionary_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6585:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6585 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_validation_graph_model_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6607:37: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6607 | if (gtk_combo_box_get_active_iter(self, &iter)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6609:49: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6609 | gtk_tree_model_get(gtk_combo_box_get_model(self),&iter,1,&new_active_model,-1); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6609:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 6609 | gtk_tree_model_get(gtk_combo_box_get_model(self),&iter,1,&new_active_model,-1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_validation_graph_chain_id_combobox_changed(GtkComboBoxText*, gpointer)': glade-callbacks.cc:6619:66: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6619 | auto chain_id = std::string(gtk_combo_box_text_get_active_text(self)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_ramachandran_plot_molecule_chooser_ok_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:6698:37: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6698 | if (gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6700:49: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6700 | gtk_tree_model_get(gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)),&iter,1,&imol_active,-1); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6700:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 6700 | gtk_tree_model_get(gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)),&iter,1,&imol_active,-1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_run_script_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:1108:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 1108 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void run_script_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:1131:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 1131 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Run Script File", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 1132 | parent_window, | ~~~~~~~~~~~~~~ 1133 | action, | ~~~~~~~ 1134 | ("_Cancel"), | ~~~~~~~~~~~~ 1135 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 1136 | ("_Open"), | ~~~~~~~~~~ 1137 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 1138 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from glade-callbacks-main-window.cc:59: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ create-menu-item-actions.cc: In function 'void screenshot_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:2240:38: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 2240 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(file_chooser), "coot-screendump.tga"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void show_validation_graphs_dialog(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:2393:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2393 | gtk_combo_box_set_active(GTK_COMBO_BOX(model_combobox), imol); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void ramachandran_plot_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:2408:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2408 | gtk_combo_box_set_active(GTK_COMBO_BOX(model_combobox), imol_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from setup-gui-components.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-main-window.cc: In function 'void on_save_coordinates_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:403:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 403 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-main-window.cc: In function 'void on_dataset_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:432:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 432 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-main-window.cc: In function 'void on_map_name_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:463:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 463 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void setup_validation_graph_dialog()': setup-gui-components.cc:162:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 162 | gtk_combo_box_set_model(GTK_COMBO_BOX(model_combobox),GTK_TREE_MODEL(graphics_info_t::validation_graph_model_list)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:163:31: warning: 'void gtk_combo_box_set_id_column(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 163 | gtk_combo_box_set_id_column(GTK_COMBO_BOX(model_combobox),0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:142:15: note: declared here 142 | void gtk_combo_box_set_id_column (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void setup_ramachandran_plot_chooser_dialog()': setup-gui-components.cc:170:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 170 | gtk_combo_box_set_model(GTK_COMBO_BOX(model_combobox), GTK_TREE_MODEL(graphics_info_t::ramachandran_plot_model_list)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:171:31: warning: 'void gtk_combo_box_set_id_column(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 171 | gtk_combo_box_set_id_column(GTK_COMBO_BOX(model_combobox),0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:142:15: note: declared here 142 | void gtk_combo_box_set_id_column (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void attach_css_style_class_to_overlays()': setup-gui-components.cc:188:36: warning: 'void gtk_css_provider_load_from_data(GtkCssProvider*, const char*, gssize)' is deprecated: Use 'gtk_css_provider_load_from_string' instead [-Wdeprecated-declarations] 188 | gtk_css_provider_load_from_data (provider, ".mainWindowOverlayChild { background: rgba(0,0,0,0.7); }", -1); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:99: /usr/include/gtk-4.0/gtk/gtkcssprovider.h:49:18: note: declared here 49 | void gtk_css_provider_load_from_data (GtkCssProvider *css_provider, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In lambda function: setup-gui-components.cc:191:62: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 191 | GtkStyleContext *context = gtk_widget_get_style_context(widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:192:38: warning: 'void gtk_style_context_add_provider(GtkStyleContext*, GtkStyleProvider*, guint)' is deprecated [-Wdeprecated-declarations] 192 | gtk_style_context_add_provider (context, GTK_STYLE_PROVIDER (provider), GTK_STYLE_PROVIDER_PRIORITY_APPLICATION); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:267: /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:64:6: note: declared here 64 | void gtk_style_context_add_provider (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:193:35: warning: 'void gtk_style_context_add_class(GtkStyleContext*, const char*)' is deprecated [-Wdeprecated-declarations] 193 | gtk_style_context_add_class (context, "mainWindowOverlayChild"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:90:10: note: declared here 90 | void gtk_style_context_add_class (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void add_python_scripting_entry_completion(GtkWidget*)': setup-gui-components.cc:215:61: warning: 'GtkEntryCompletion* gtk_entry_completion_new()' is deprecated [-Wdeprecated-declarations] 215 | GtkEntryCompletion *completion = gtk_entry_completion_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:66:21: note: declared here 66 | GtkEntryCompletion *gtk_entry_completion_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:216:45: warning: 'void gtk_entry_completion_set_popup_completion(GtkEntryCompletion*, gboolean)' is deprecated [-Wdeprecated-declarations] 216 | gtk_entry_completion_set_popup_completion(completion, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:108:21: note: declared here 108 | void gtk_entry_completion_set_popup_completion (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:217:40: warning: 'void gtk_entry_completion_set_text_column(GtkEntryCompletion*, int)' is deprecated [-Wdeprecated-declarations] 217 | gtk_entry_completion_set_text_column(completion, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:127:21: note: declared here 127 | void gtk_entry_completion_set_text_column (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:218:47: warning: 'void gtk_entry_completion_set_minimum_key_length(GtkEntryCompletion*, int)' is deprecated [-Wdeprecated-declarations] 218 | gtk_entry_completion_set_minimum_key_length(completion, 2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:85:21: note: declared here 85 | void gtk_entry_completion_set_minimum_key_length (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:219:28: warning: 'void gtk_entry_set_completion(GtkEntry*, GtkEntryCompletion*)' is deprecated [-Wdeprecated-declarations] 219 | gtk_entry_set_completion(GTK_ENTRY(entry), completion); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkentry.h:160:21: note: declared here 160 | void gtk_entry_set_completion (GtkEntry *entry, | ^~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:286:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 286 | GtkListStore *store = gtk_list_store_new(1, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ setup-gui-components.cc:290:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 290 | gtk_list_store_append( store, &iter ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:293:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 293 | gtk_list_store_set( store, &iter, 0, c.c_str(), -1 ); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ setup-gui-components.cc:296:34: warning: 'void gtk_entry_completion_set_model(GtkEntryCompletion*, GtkTreeModel*)' is deprecated [-Wdeprecated-declarations] 296 | gtk_entry_completion_set_model(completion, GTK_TREE_MODEL(store)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:74:21: note: declared here 74 | void gtk_entry_completion_set_model (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: link: g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-density-score-by-residue-bin density-score-by-residue-src.o ./.libs/libcootsumo.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-extras.so ../coords/.libs/libcoot-coords.so ../mini-mol/.libs/libcoot-mini-mol.so ../ligand/.libs/libcoot-ligand.so ../analysis/.libs/libcoot-analysis.so ../db-main/.libs/libcoot-db-main.so ../ideal/.libs/libcoot-ideal.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so ../cootaneer/.libs/libcootaneer.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from probe-clash-score.hh:32, from c-interface-ligands-swig.hh:35, from coot_wrap_python.cc:3466: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from new-startup.cc:29: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ new-startup.cc: In function 'void init_framebuffers(GtkWidget*)': new-startup.cc:60:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 60 | gtk_widget_get_allocation(GTK_WIDGET(glarea), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,--export-dynamic -Wl,-z,relro -o Coot main.o glade-callbacks.o glade-callbacks-main-window.o glade-callbacks-preferences.o glade-callbacks-shader-settings.o new-startup.o setup-gui-components.o create-menu-item-actions.o libcootsumo.la ../density-contour/libcoot-isosurface.la ../layla/libcoot-layla.la ../coot-utils/libcoot-map-utils.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lcurl -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lepoxy -L/usr/lib/aarch64-linux-gnu -lpython3.13 libtool: link: g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,--export-dynamic -Wl,-z -Wl,relro -o .libs/Coot main.o glade-callbacks.o glade-callbacks-main-window.o glade-callbacks-preferences.o glade-callbacks-shader-settings.o new-startup.o setup-gui-components.o create-menu-item-actions.o ./.libs/libcootsumo.so ../density-contour/.libs/libcoot-isosurface.so ../layla/.libs/libcoot-layla.so ../coot-utils/.libs/libcoot-map-utils.so ../coords/.libs/libcoot-coords.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lcurl -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lepoxy -L/usr/lib/aarch64-linux-gnu -lpython3.13 -fopenmp /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined libcootsumo.la ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../geometry/libcoot-geometry.la ../pli/libcoot-pli.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o _coot.la -rpath /usr/lib/python3/dist-packages coot.lo coot_wrap_python.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot.o .libs/coot_wrap_python.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/src/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcootsumo.so ../coot-utils/.libs/libcoot-coord-utils.so ../coords/.libs/libcoot-coords.so ../geometry/.libs/libcoot-geometry.so ../pli/.libs/libcoot-pli.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot.so.0 -o .libs/_coot.so.0.0.0 libtool: link: (cd ".libs" && rm -f "_coot.so.0" && ln -s "_coot.so.0.0.0" "_coot.so.0") libtool: link: (cd ".libs" && rm -f "_coot.so" && ln -s "_coot.so.0.0.0" "_coot.so") libtool: link: ( cd ".libs" && rm -f "_coot.la" && ln -s "../_coot.la" "_coot.la" ) make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' Making all in ui make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_build --buildsystem cmake cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/coot-1.1.09+dfsg -B/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/cootapi.dir/build.make CMakeFiles/cootapi.dir/depend make -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/build make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o [ 1%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp [ 1%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/cootapi.dir/DependInfo.cmake "--color=" [ 2%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -c /usr/share/nanobind/src/nb_func.cpp [ 2%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -c /usr/share/nanobind/src/nb_type.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -c /usr/share/nanobind/src/nb_enum.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -c /usr/share/nanobind/src/nb_ndarray.cpp make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/cootapi.dir/build.make CMakeFiles/cootapi.dir/build make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o [ 2%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/cod-types.cc [ 2%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -c /usr/share/nanobind/src/nb_static_property.cpp [ 2%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -c /usr/share/nanobind/src/common.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/svg-molecule.cc [ 3%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o [ 3%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o [ 3%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -c /usr/share/nanobind/src/error.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD 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-I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp [ 7%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCoord.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCreator.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCreator.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCreator.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXCreator.cpp [ 8%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXException.cpp [ 8%] Building CXX object 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-I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp [ 10%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereNode.cpp.o /usr/bin/c++ 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp [ 11%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB 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-I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp [ 11%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.cpp.o /usr/bin/c++ 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-I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp [ 14%] Building CXX object 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp [ 14%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ColorRule.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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-I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp [ 17%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.cpp.o /usr/bin/c++ 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-I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp [ 21%] Building CXX object 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-I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp [ 22%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SolidColorRule.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK 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-I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Vector2.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Vector2.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Vector2.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/Vector2.cpp [ 23%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Vector3.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp [ 24%] Building C object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/lfit.c.o /usr/bin/cc -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL 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/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/lfit.c [ 24%] Building CXX object CMakeFiles/cootapi.dir/api/rigid-body-fit.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/blender-mesh.cc.o -MF CMakeFiles/cootapi.dir/api/blender-mesh.cc.o.d -o CMakeFiles/cootapi.dir/api/blender-mesh.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/blender-mesh.cc [ 24%] Building CXX object CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o -MF CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o.d -o CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/add-terminal-residue.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/api/rigid-body-fit.hh:7, from /build/reproducible-path/coot-1.1.09+dfsg/api/rigid-body-fit.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 25%] Building CXX object CMakeFiles/cootapi.dir/api/interfaces.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/interfaces.cc.o -MF CMakeFiles/cootapi.dir/api/interfaces.cc.o.d -o CMakeFiles/cootapi.dir/api/interfaces.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/interfaces.cc [ 25%] Building CXX object CMakeFiles/cootapi.dir/api/instancing.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-colour.cc.o -MF CMakeFiles/cootapi.dir/api/coot-colour.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-colour.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-colour.cc [ 26%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc [ 26%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-backup.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB 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CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/api/add-terminal-residue.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds-instanced.cc [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-change-chain-id.cc [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-moltris.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc:37: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-validation.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-moltris.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:174, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc:38: /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-merge-molecules.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds.cc:39: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-refine.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds-instanced.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-change-chain-id.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-validation.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-merge-molecules.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-refine.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-replace-fragment.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-blender.cc [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-blender.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-replace-fragment.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-blender.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-blender.cc:3: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-gltf.cc [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-bucca-ml-growing.cc [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-maps.cc [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-mmrrcc.cc [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-superpose.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-modelling.cc [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-gltf.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o -MF CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o.d -o CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/phi-psi-prob.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-bucca-ml-growing.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc:40: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -MF CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o.d -o CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/moorhen-h-bonds.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -MF CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o.d -o CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/rama-plot-phi-psi.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-mmrrcc.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-maps.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-superpose.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/wligand.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-modelling.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/moorhen-h-bonds.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/daca.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/daca.cc.o -MF CMakeFiles/cootapi.dir/analysis/daca.cc.o.d -o CMakeFiles/cootapi.dir/analysis/daca.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/daca.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:6: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/daca.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o -MF CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o.d -o CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/kolmogorov.cc [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/stats.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/stats.cc.o -MF CMakeFiles/cootapi.dir/analysis/stats.cc.o.d -o CMakeFiles/cootapi.dir/analysis/stats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o -MF CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o.d -o CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/bfkurt.cc [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/mogul.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/mogul.cc.o -MF CMakeFiles/cootapi.dir/analysis/mogul.cc.o.d -o CMakeFiles/cootapi.dir/analysis/mogul.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/mogul.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/kolmogorov.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o -MF CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o.d -o CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/b-factor-histogram.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/mogul.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o -MF CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o.d -o CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/typed-distances.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/mogul.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/b-factor-histogram.cc:288: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/cablam.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/cablam.cc.o -MF CMakeFiles/cootapi.dir/analysis/cablam.cc.o.d -o CMakeFiles/cootapi.dir/analysis/cablam.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/cablam.cc [ 35%] Building CXX object CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o -MF CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/density-contour-triangles.cc /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc: In member function 'float molecules_container_t::fit_to_map_by_random_jiggle_with_blur_using_cid(int, int, const std::string&, float, int, float)': /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:414:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 414 | auto p = coot::util::mean_and_variance(xmap); | ^ [ 35%] Building CXX object CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o -MF CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o.d -o CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/Vectors.cpp [ 35%] Building CXX object CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o -MF CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o.d -o CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/CIsoSurface.cpp In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/density-contour/density-contour-triangles.cc:155: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 36%] Building CXX object CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o -MF CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/occlusion.cc [ 36%] Building CXX object CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o -MF CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/gaussian-surface.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/density-contour/CIsoSurface.cpp:1244: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 36%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/quat.cc [ 36%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/mgtree.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/density-contour/gaussian-surface.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 37%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/cartesian.cc [ 37%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/geomutil.cc [ 37%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/matrix.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o -MF CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o.d -o CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/skeleton/dm-utils.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o -MF CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o.d -o CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/skeleton/BuildCas.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o -MF CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o.d -o CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/skeleton/graphical_skel.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/ideal/pepflip.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/pepflip.cc.o -MF CMakeFiles/cootapi.dir/ideal/pepflip.cc.o.d -o CMakeFiles/cootapi.dir/ideal/pepflip.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/pepflip.cc [ 39%] Building CXX object CMakeFiles/cootapi.dir/ideal/parallel-planes.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/ng.cc.o -MF CMakeFiles/cootapi.dir/ideal/ng.cc.o.d -o CMakeFiles/cootapi.dir/ideal/ng.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/parallel-planes.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 39%] Building CXX object CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o -MF CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o.d -o CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/torsion-bonds.cc [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o -MF CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o.d -o CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/chi-squareds.cc [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o -MF CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o.d -o CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/trans-peptide.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc:50: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o -MF CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o.d -o CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/make-restraints.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/parallel-planes.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/torsion-bonds.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc: In member function 'std::pair coot::simple_restraint::distortion(mmdb::Atom**, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc:4068:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4068 | coot::simple_restraint::distortion(mmdb::PAtom *atoms, const double &lj_epsilon) const { | ^~~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -MF CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o.d -o CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/pull-restraint.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chi-squareds.cc:41: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/neutron.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/neutron.cc.o -MF CMakeFiles/cootapi.dir/ideal/neutron.cc.o.d -o CMakeFiles/cootapi.dir/ideal/neutron.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/neutron.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/trans-peptide.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/make-restraints.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/pull-restraint.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc: In member function 'void coot::restraints_container_t::analyze_for_bad_restraints(coot::restraint_type_t, double)': /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc:2354:97: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2354 | std::pair distortion_pair = rest.distortion(atom, lennard_jones_epsilon); // 2nd arg is not used for bonds | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/neutron.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -MF CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o.d -o CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/coot-compare-residues.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/link-restraints.cc [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/mods.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/mods.cc.o -MF CMakeFiles/cootapi.dir/ideal/mods.cc.o.d -o CMakeFiles/cootapi.dir/ideal/mods.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/mods.cc [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o -MF CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o.d -o CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints-kk.cc [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/chirals.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/chirals.cc.o -MF CMakeFiles/cootapi.dir/ideal/chirals.cc.o.d -o CMakeFiles/cootapi.dir/ideal/chirals.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/coot-compare-residues.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/link-restraints.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/gradients.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/gradients.cc.o -MF CMakeFiles/cootapi.dir/ideal/gradients.cc.o.d -o CMakeFiles/cootapi.dir/ideal/gradients.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/gradients.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mods.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints-kk.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -MF CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o.d -o CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/flanking.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/flanking.cc.o -MF CMakeFiles/cootapi.dir/ideal/flanking.cc.o.d -o CMakeFiles/cootapi.dir/ideal/flanking.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/flanking.cc [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/distortion.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/distortion.cc.o -MF CMakeFiles/cootapi.dir/ideal/distortion.cc.o.d -o CMakeFiles/cootapi.dir/ideal/distortion.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/distortion.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/gradients.cc:39: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -MF CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o.d -o CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint-kk.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/distortion.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -MF CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o.d -o CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/flanking.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -MF CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o.d -o CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/phi-psi.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/lograma.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/lograma.cpp.o -MF CMakeFiles/cootapi.dir/ideal/lograma.cpp.o.d -o CMakeFiles/cootapi.dir/ideal/lograma.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/lograma.cpp In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint-kk.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o -MF CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o.d -o CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/process-dfs-in-range.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 46%] Building CXX object CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -MF CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o.d -o CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.cc [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/align-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/align-utils.cc.o -MF CMakeFiles/cootapi.dir/utils/align-utils.cc.o.d -o CMakeFiles/cootapi.dir/utils/align-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/align-utils.cc [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o -MF CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o.d -o CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/atomic-numbers.cc [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/backward.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/backward.cpp.o -MF CMakeFiles/cootapi.dir/utils/backward.cpp.o.d -o CMakeFiles/cootapi.dir/utils/backward.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/backward.cpp In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/atomic-numbers.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/colour-holder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -MF CMakeFiles/cootapi.dir/utils/colour-holder.cc.o.d -o CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/colour-holder.cc [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -MF CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o.d -o CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-fasta.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-fasta.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/coot-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -MF CMakeFiles/cootapi.dir/utils/coot-utils.cc.o.d -o CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:37: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/dodec.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/dodec.cc.o -MF CMakeFiles/cootapi.dir/utils/dodec.cc.o.d -o CMakeFiles/cootapi.dir/utils/dodec.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/dodec.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1393:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1393 | const zo::rama_table_set &zorts) const { | ^~~~~ [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/radix.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/radix.cc.o -MF CMakeFiles/cootapi.dir/utils/radix.cc.o.d -o CMakeFiles/cootapi.dir/utils/radix.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/radix.cc [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o -MF CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o.d -o CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/gdk-keysyms.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.cc:59: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o -MF CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o.d -o CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/hsv-rgb.cc [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o -MF CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o.d -o CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/pir-alignment.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/process-dfs-in-range.cc:37: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/gdk-keysyms.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/hsv-rgb.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o -MF CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o.d -o CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/setup-syminfo.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/pir-alignment.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/split-indices.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/split-indices.cc.o -MF CMakeFiles/cootapi.dir/utils/split-indices.cc.o.d -o CMakeFiles/cootapi.dir/utils/split-indices.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/split-indices.cc [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/logging.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/logging.cc.o -MF CMakeFiles/cootapi.dir/utils/logging.cc.o.d -o CMakeFiles/cootapi.dir/utils/logging.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/logging.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:871:71: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 871 | std::pair grads = zorts.df(pp, rt); | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/setup-syminfo.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 50%] Building CXX object CMakeFiles/cootapi.dir/utils/threads.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/threads.cc.o -MF CMakeFiles/cootapi.dir/utils/threads.cc.o.d -o CMakeFiles/cootapi.dir/utils/threads.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/threads.cc [ 50%] Building CXX object CMakeFiles/cootapi.dir/utils/win-compat.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/win-compat.cc.o -MF CMakeFiles/cootapi.dir/utils/win-compat.cc.o.d -o CMakeFiles/cootapi.dir/utils/win-compat.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/win-compat.cc [ 50%] Building CXX object CMakeFiles/cootapi.dir/db-main/db-strands.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/db-main/db-strands.cc.o -MF CMakeFiles/cootapi.dir/db-main/db-strands.cc.o.d -o CMakeFiles/cootapi.dir/db-main/db-strands.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-strands.cc [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o -MF CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o.d -o CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/residue-distortions.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/threads.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-strands.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o -MF CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o.d -o CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.cc [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o -MF CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o.d -o CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/sequence-assignment.cc [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/high-res.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/high-res.cc.o -MF CMakeFiles/cootapi.dir/high-res/high-res.cc.o.d -o CMakeFiles/cootapi.dir/high-res/high-res.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/high-res.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o -MF CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o.d -o CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/flev-annotations.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/residue-distortions.cc:21: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/high-res.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/high-res.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/high-res/sequence-assignment.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -MF CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o.d -o CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/protein-ligand-interactions.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -MF CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o.d -o CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/sdf-interface.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cmtz-interface.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:833:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 833 | coot::crankshaft::optimize_a_triple::df(const gsl_vector *v, | ^~~~ /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/lidia-core-functions.cc [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/pli/sdf-interface.cc:147: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/merge-atom-selections.cc [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-least-squares.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/diff-diff-map-peaks.cc [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/gltf-export.cc [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -MF CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o.d -o CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shiftfield.cpp In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/merge-atom-selections.cc:34: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/stack-and-pair.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/spherical-harmonics.cc [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/peak-search-from-list.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/helix-analysis.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shiftfield.h:31, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::F_phi; C = clipper::datatypes::Compute_scale_u_aniso >; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/segmap.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cablam-markup.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/fib-sphere.cc [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/find-water-baddies.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc:915: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/blob-line.cc [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-glyco.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cablam-markup.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-glyco.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/find-water-baddies.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils.cc:34: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/blob-line.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/merge-molecules.cc [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/texture-as-floats.cc [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.cc [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/water-coordination.cc [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bonded-pairs.cc [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/c-beta-deviations.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/texture-as-floats.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tools.cc [ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-rama.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-rama.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/secondary-structure-headers.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB 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/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/polar-atoms.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/helix-like.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/plane-utils.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/pae.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/pae.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/pae.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/pae.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pae.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-tree-extras.cc [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-heavy.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-tree-extras.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pae.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/jed-flip.cc [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pepflip-using-difference-map.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-heavy.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-overlaps.cc [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bricks.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pepflip-using-difference-map.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-overlaps.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/jed-flip.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/jed-flip.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/mutate.cc [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/elastic.cc [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/elastic.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/mutate.cc:644: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-h-bonds.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:39: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:973:63: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:3842: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/core/hkl_compute.h:48, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:682:39: required from here 682 | fphis_out[hri] = fphis_in[hkl]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-nucleotides.cc In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:23: /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = const double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4416:45: required from here 4416 | data.push_back(std::make_pair(A_data[i].first, y)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4501:87: required from here 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4656:69: required from here 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/glyco-torsions.cc [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/fast-eigens.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-nucleotides.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/glyco-torsions.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-shelx-ins.cc /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:973:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^~~~ [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contacts-by-bricks.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-shelx-ins.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In lambda function: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'void coot::util::reverse_map(clipper::Xmap*)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4713:55: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4713 | std::pair mv = mean_and_variance(xmap); | ^ [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contacts-by-bricks.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/lsq-improve.cc [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/trim.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/trim.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/trim.cc [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o -MF CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In lambda function: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-lsq.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In lambda function: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4501:87: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.h:31, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:153:81: required from here 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/trim.cc:21: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:209:29: required from here 209 | fphi[ih] = fc[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-lsq.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:153:67: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:209:16: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-heavy.hh:28, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/strand-fragments.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc: In constructor 'coot::util::fffear_search::fffear_search(mmdb::Manager*, int, const clipper::Xmap&, float, bool)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc:159:70: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 159 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bonded-atoms.cc [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/fragment-container.cc [ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/positron.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/positron.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/positron.cc [ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/maps-spherical.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 121 | coot::shift_field_b_factor_refinement(const clipper::HKL_data< clipper::datatypes::F_sigF > &fo0, | ^~~~ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:209:29: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/positron.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/maps-spherical.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/peak-search.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/xmap-stats.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/sfcalc-genmap.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/reduce.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contact-info.cc [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/hole.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/hole.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/reduce.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/slurp-map.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/sfcalc-genmap.cc:30: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_abcd_from_phifom; T = clipper::datatypes::ABCD]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::ABCD' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc: In member function 'std::pair coot::hole::optimize_point(const clipper::Coord_orth&, int)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc:253:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 253 | coot::hole::optimize_point(const clipper::Coord_orth &pt, int selhnd) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/slurp-map.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/exp-fit.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/clipper_instance.h:49, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc:1096:38: required from here 1096 | if (!my_fsigf[ih.hkl()].missing()) { | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cylinder.cc [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cylinder-with-rotation-translation.cc [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/prideout-octasphere.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/oct.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/oct.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/oct.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/oct.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/oct.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shapes.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/simple-mesh.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o -MF CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o.d -o CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo-bonds.cc [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o -MF CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o.d -o CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines_ext.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo-bonds.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'bool coot::util::map_fill_from_mtz(clipper::Xmap*, std::string, std::string, std::string, std::string, short int, float, short int, float)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:59:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 59 | coot::util::map_fill_from_mtz(clipper::Xmap *xmap, | ^~~~ [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/utils.cc.o -MF CMakeFiles/cootapi.dir/coords/utils.cc.o.d -o CMakeFiles/cootapi.dir/coords/utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/utils.cc [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.cc [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -MF CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o.d -o CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc:48: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.cc:46: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc:50: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/Cartesian.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -MF CMakeFiles/cootapi.dir/coords/Cartesian.cc.o.d -o CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Cartesian.cc [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/loop-path.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/loop-path.cc.o -MF CMakeFiles/cootapi.dir/coords/loop-path.cc.o.d -o CMakeFiles/cootapi.dir/coords/loop-path.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/loop-path.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/coot-close.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/coot-close.cc.o -MF CMakeFiles/cootapi.dir/coords/coot-close.cc.o.d -o CMakeFiles/cootapi.dir/coords/coot-close.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/coot-close.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/cos-sin.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/cos-sin.cc.o -MF CMakeFiles/cootapi.dir/coords/cos-sin.cc.o.d -o CMakeFiles/cootapi.dir/coords/cos-sin.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/cos-sin.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o -MF CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o.d -o CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/rotamer-markup.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o -MF 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o -MF CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o.d -o CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc [ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-link.cc [ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/rotamer-markup.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/main-chain.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/main-chain.cc.o -MF CMakeFiles/cootapi.dir/geometry/main-chain.cc.o.d -o CMakeFiles/cootapi.dir/geometry/main-chain.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/main-chain.cc [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-mon-lib.cc [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-geometry.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-extras.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o -MF CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/dictionary-residue.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-mon-lib.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o -MF CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/dict-utils.cc [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -MF CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o.d -o CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/read-sbase.cc [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o -MF CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o.d -o CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/hydrophobic.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-link.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc:41: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o -MF CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o.d -o CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/energy-lib.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/read-sbase.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-geometry.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/dict-utils.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o -MF CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o.d -o CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/srs-interface.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/dictionary-residue.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/energy-lib.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/srs-interface.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK 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-DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-geometry-mmdb.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o -MF 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dreiding.cc.o -MF CMakeFiles/cootapi.dir/geometry/dreiding.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dreiding.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/dreiding.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o -MF CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o.d -o CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/chem_mods.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/link.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/link.cc.o -MF CMakeFiles/cootapi.dir/geometry/link.cc.o.d -o CMakeFiles/cootapi.dir/geometry/link.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/link.cc [ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o -MF CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o.d -o CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o -c 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-I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -MF CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o.d -o CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/glyco-tools.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/link.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o -MF CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o.d -o CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/mol-utils-2.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/glyco-tools.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 82%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-donor-acceptors.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o -MF CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o.d -o CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/intercept-3GP.cc [ 82%] Building CXX object CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o -MF CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o.d -o CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/build/CalphaBuild.cc [ 82%] Building CXX object CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o -MF CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o.d -o CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.hh:22, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 83%] Building CXX object CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o -MF CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o.d -o CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 83%] Building CXX object CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o -MF CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o.d -o CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/atom-quads.cc [ 83%] Building CXX object CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/cootilus/cootilus-build.cpp /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.cc: In member function 'std::pair coot::minimol::molecule::get_pos() const': /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.cc:1654:36: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1654 | coot::minimol::molecule::get_pos() const { | ^~~~~ [ 83%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/cootilus/nautilus-join.cpp [ 84%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nautilus-ss-find.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nautilus-tools.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nautilus-tools.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nautilus-tools.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/cootilus/nautilus-tools.cpp [ 85%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nucleicacid_db.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nucleicacid_db.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nucleicacid_db.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nucleicacid_db.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/cootilus/nucleicacid_db.cpp [ 85%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/lbg-shared.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 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85%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/lbg-molfile.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/lig-build.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/lig-build.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/lig-build.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.cc [ 86%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/get-residue.cc [ 86%] Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o -MF CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o.d -o CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/angles/AngleInfo-angle-torsions-autogen.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 86%] Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o -MF CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o.d -o CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/angles/AngleInfo-theta_2-autogen.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 87%] Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o -MF CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o.d -o CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/angles/AngleInfo.cc [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/dipole.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/dipole.cc.o -MF CMakeFiles/cootapi.dir/ligand/dipole.cc.o.d -o CMakeFiles/cootapi.dir/ligand/dipole.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/dipole.cc [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o -MF CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o.d -o CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/chi-angles.cc [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -MF CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o.d -o CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/monomer-utils.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-score-card.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/dipole.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o -MF CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o.d -o CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/chi-angles-autogen.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o -MF CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o.d -o CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/helix-placement.cc [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-score-card.hh:31, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-score-card.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -MF CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o.d -o CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/dunbrack.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/chi-angles.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:60: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/dunbrack.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:69: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:72: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -MF CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o.d -o CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/primitive-chi-angles.cc /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc: In function 'std::pair > coot::get_clash_score(const minimol::molecule&, atom_selection_container_t, int)': /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc:596:76: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 596 | std::pair rotamer_info = a_rotamer.get_pos(); | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/helix-placement.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o -MF CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer-tables.cc [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o -MF CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o.d -o CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer-tables.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:55: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -MF CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o.d -o CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/richardson-rotamers.cc [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligands-db.cc [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc:38: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o -MF CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o.d -o CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc:1293:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~~ /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc: In member function 'std::pair coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager*) const': /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc:176:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 176 | coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager *mol) const { | ^~~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o -MF CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o.d -o CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/base-pairing.cc /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc:2408:64: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2408 | std::pair mi = s.median_and_iqr(); | ^ [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o -MF CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ideal-rna.cc [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o -MF CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o.d -o CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/wiggly-ligand.cc [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o -MF CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o.d -o CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/torsion-general.cc [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/joining-residues.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/joining-residues.cc.o -MF 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/richardson-rotamer.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/side-chain.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/side-chain.cc.o -MF CMakeFiles/cootapi.dir/ligand/side-chain.cc.o.d -o CMakeFiles/cootapi.dir/ligand/side-chain.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o -MF CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/rigid-body.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o -MF CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o.d -o CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/smith-waterman.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rigid-body.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rigid-body.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/joining-residues.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/wiggly-ligand.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -MF CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o.d -o CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc [ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -MF CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o.d -o CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/fast-ss-search.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/smith-waterman.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/rotamer.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer.cc [ 95%] Building CXX object CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -MF CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o.d -o CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/src/coot-nomenclature.cc [ 95%] Building CXX object CMakeFiles/cootapi.dir/db-main/db-main.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/db-main/db-main.cc.o -MF CMakeFiles/cootapi.dir/db-main/db-main.cc.o.d -o CMakeFiles/cootapi.dir/db-main/db-main.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-main.cc [ 95%] Building CXX object CMakeFiles/cootapi.dir/compat/getopt.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/compat/getopt.cc.o -MF CMakeFiles/cootapi.dir/compat/getopt.cc.o.d -o CMakeFiles/cootapi.dir/compat/getopt.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/compat/getopt.cc /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc: In constructor 'coot::tube_finder_t::tube_finder_t(const clipper::Xmap&)': /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc:45:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mv = util::mean_and_variance(blurred_xmap); | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.hh:22, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/fast-ss-search.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 95%] Building CXX object CMakeFiles/cootapi.dir/compat/getopt1.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/compat/getopt1.cc.o -MF CMakeFiles/cootapi.dir/compat/getopt1.cc.o.d -o CMakeFiles/cootapi.dir/compat/getopt1.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/compat/getopt1.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-main.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 96%] Building CXX object CMakeFiles/cootapi.dir/src/gl-matrix.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/cootapi.dir/ligand/dipole.cc.o "CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o" "CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o" "CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o" "CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o" CMakeFiles/cootapi.dir/ligand/ligand.cc.o "CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o" "CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o" CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o "CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o" "CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o" "CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o" "CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o" "CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o" "CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o" CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o "CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o" "CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o" "CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o" 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'/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/chapi.dir/DependInfo.cmake "--color=" make -f CMakeFiles/findwaters.dir/build.make CMakeFiles/findwaters.dir/depend make -f CMakeFiles/coot-mini-rsr.dir/build.make CMakeFiles/coot-mini-rsr.dir/depend make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg 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/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/coot-mini-rsr.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/test-molecules-container.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/findligand.dir/build.make CMakeFiles/findligand.dir/build make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/chapi.dir/build.make CMakeFiles/chapi.dir/build make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/test-molecules-container.dir/build.make CMakeFiles/test-molecules-container.dir/build make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object CMakeFiles/findligand.dir/ligand/find-ligand.cc.o 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-Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o -MF CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o.d -o CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-nanobind.cc make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object CMakeFiles/findwaters.dir/ligand/find-waters.cc.o [ 98%] Building CXX object CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/findwaters.dir/ligand/find-waters.cc.o -MF CMakeFiles/findwaters.dir/ligand/find-waters.cc.o.d -o CMakeFiles/findwaters.dir/ligand/find-waters.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/find-waters.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o -MF CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/test-molecules-container.cc [ 98%] Building CXX object CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o -MF CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o.d -o CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc [ 98%] Building CXX object CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o [ 98%] Building CXX object CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o -MF CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o -MF CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/lucrezia-tests.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/find-waters.cc:45: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/find-ligand.cc:46: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:56: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:58: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/lucrezia-tests.hh:5, from /build/reproducible-path/coot-1.1.09+dfsg/api/lucrezia-tests.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-nanobind.cc:9: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.hh:23, from /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/test-molecules-container.cc:7: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:174, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:60: /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:66: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 98%] Linking CXX executable findwaters /usr/bin/cmake -E cmake_link_script CMakeFiles/findwaters.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/findwaters.dir/link.d "CMakeFiles/findwaters.dir/ligand/find-waters.cc.o" -o findwaters -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target findwaters In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:41: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ [ 98%] Linking CXX executable findligand /usr/bin/cmake -E cmake_link_script CMakeFiles/findligand.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/findligand.dir/link.d "CMakeFiles/findligand.dir/ligand/find-ligand.cc.o" -o findligand -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target findligand [ 99%] Linking CXX executable coot-mini-rsr /usr/bin/cmake -E cmake_link_script CMakeFiles/coot-mini-rsr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/coot-mini-rsr.dir/link.d "CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o" -o coot-mini-rsr -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target coot-mini-rsr [ 99%] Linking CXX shared module chapi.cpython-313-aarch64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/chapi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/chapi.dir/link.d -Wl,-z,relro -shared -o chapi.cpython-313-aarch64-linux-gnu.so "CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o" -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu: libnanobind-static.a libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so /usr/lib/aarch64-linux-gnu/libdw.so /usr/lib/aarch64-linux-gnu/libelf.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target chapi [100%] Linking CXX executable test-molecules-container /usr/bin/cmake -E cmake_link_script CMakeFiles/test-molecules-container.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test-molecules-container.dir/link.d "CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o" "CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o" "CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o" -o test-molecules-container -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libssm.so /usr/lib/aarch64-linux-gnu/libclipper-minimol.so /usr/lib/aarch64-linux-gnu/libclipper-mmdb.so /usr/lib/aarch64-linux-gnu/libclipper-cif.so /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libclipper-contrib.so /usr/lib/libsfftw.so /usr/lib/libsrfftw.so /usr/lib/aarch64-linux-gnu/libmmdb2.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libgsl.so /usr/lib/aarch64-linux-gnu/libgslcblas.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libgemmi_cpp.a /usr/lib/aarch64-linux-gnu/libdw.so /usr/lib/aarch64-linux-gnu/libelf.so /usr/lib/aarch64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [100%] Built target test-molecules-container make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' Making install in auxil make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making install in catcheck make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' Making install in rama make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' Making install in sec-str make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' Making install in strand-analysis make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' Making install in vectors make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making install in scheme make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/scheme' /usr/bin/install -c -m 644 0-auto-rot.scm coot-utils.scm get-ebi.scm mutate.scm background-demo.scm demo-script.scm gtkin.scm my-readline.scm bit.scm extra-top-level.scm hello.scm raster3d.scm brute-lsqman.scm file-utils.scm junk.scm refmac.scm coot-gui.scm filter.scm libcheck.scm simple.scm coot.scm get-ebi.save.scm local-code.scm trivial.scm gap.scm remote-control.scm povray.scm coot-lsq.scm shelx.scm group-settings.scm fitting.scm americanisms.scm tips.scm tips-gui.scm generic-objects.scm cns2coot.scm extensions.scm ncs.scm create-server.scsh coot-crash-catcher.scm '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/scheme' /usr/bin/install -c -m 644 snarf-coot-docs.scm clear-backup.scm bones-reader.scm matrices.scm fascinating-things.scm shelx-extensions.scm parse-pisa-xml.scm check-for-updates.scm 3d-generator-import.scm gui-hole.scm gui-prosmart.scm get-recent-pdbe.scm json-reader.scm jligand.scm jligand-gui.scm redefine-functions.scm user-define-restraints.scm template-key-bindings.scm gui-add-linked-cho.scm ligand-check.scm run-mogul.scm contact-score-isolated-ligand.scm enhanced-ligand.scm gui-ligand-sliders.scm dictionary-generators.scm cho-restraints-from-models.scm interactive-nudge-residues.scm acedrg-link.scm add-linked-cho.scm find-baddies.scm sharpen-blur.scm dynamic-atom-overlaps-and-other-outliers.scm '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/scheme' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' Making install in python make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' /usr/bin/install -c -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py coot_fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py coot_ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_generator_3d_import.py gui_hole.py gui_prosmart.py get_recent_pdbe.py jligand.py jligand_gui.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' /usr/bin/install -c -m 644 coot_redefine_functions.py user_define_restraints.py template_key_bindings.py gui_add_linked_cho.py coot_ligand_check.py run_mogul.py coot_contact_score_isolated_ligand.py gui_contact_score_isolated_ligand.py dictionary_generators.py cho_restraints_from_models.py interactive_nudge_residues.py pdbe_validation_data.py pathology_plots.py ligand_validation_sliders.py enhanced_ligand.py gui_ligand_sliders.py coot_sharpen_blur.py coot_acedrg_link.py coot_toolbuttons.py rcrane_loader.py add_linked_cho.py coot_find_baddies.py coot_chemical_feature_clusters.py coot_res_spec_utils.py coot_output_to_window.py populate_python_menus.py coot_hole.py refine.py what_check.py coot_testing_utils.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' Byte-compiling python modules... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py Byte-compiling python modules (optimized versions) ... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' Making install in pdb-templates make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 ASN-NAG-via-NAG-ASN.pdb pyranose-pyranose-via-BETA1-4.pdb pyranose-pyranose-via-ALPHA1-2.pdb pyranose-pyranose-via-ALPHA1-3.pdb pyranose-pyranose-via-ALPHA1-6.pdb SIA-pyranose-via-ALPHA2-3.pdb link-by-torsion-to-pyranose-core-ALPHA1-2.tab link-by-torsion-to-pyranose-core-ALPHA1-3.tab link-by-torsion-to-FUC-core-ALPHA1-3.tab link-by-torsion-to-FUC-core-ALPHA1-2.tab link-by-torsion-to-FUC-core-ALPHA1-6.tab link-by-torsion-to-NAG-core-NAG-SER.tab link-by-torsion-to-pyranose-core-ALPHA1-6.tab link-by-torsion-to-pyranose-core-ALPHA2-3.tab link-by-torsion-to-pyranose-core-BETA1-2.tab link-by-torsion-to-pyranose-core-BETA1-3.tab link-by-torsion-to-pyranose-core-BETA1-4.tab link-by-torsion-to-pyranose-core-BETA1-6.tab link-by-torsion-to-pyranose-core-NAG-ASN.tab link-by-torsion-to-pyranose-core-XYP-BMA.tab NAG-decorations.tab BMA-decorations.tab MAN-decorations.tab GLC-decorations.tab GAL-decorations.tab FUC-decorations.tab FUL-decorations.tab XYP-decorations.tab theor-helix-70.pdb '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' Making install in macros make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' Making install in compat make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-compat.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-compat.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-compat.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-compat.so.0.0.0 libcoot-compat.so.0 || { rm -f libcoot-compat.so.0 && ln -s libcoot-compat.so.0.0.0 libcoot-compat.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-compat.so.0.0.0 libcoot-compat.so || { rm -f libcoot-compat.so && ln -s libcoot-compat.so.0.0.0 libcoot-compat.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-compat.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-compat.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/compat' /usr/bin/install -c -m 644 coot-getopt.h coot-sysdep.h getopt_int.h sleep-fixups.h dirent.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/compat' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' Making install in utils make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-utils.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-utils.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-utils.so.0.0.0 libcoot-utils.so.0 || { rm -f libcoot-utils.so.0 && ln -s libcoot-utils.so.0.0.0 libcoot-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-utils.so.0.0.0 libcoot-utils.so || { rm -f libcoot-utils.so && ln -s libcoot-utils.so.0.0.0 libcoot-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-utils.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/utils' /usr/bin/install -c -m 644 coot-utils.hh coot-fasta.hh dodec.hh win-compat.hh ctpl_stl.h ctpl.h pir-alignment.hh align-utils.hh split-indices.hh radix.hh logging.hh insertion-sort.hh backward.hpp colour-holder.hh setup-syminfo.hh base64-encode-decode.hh xdg-base.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/utils' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' Making install in protein_db make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-protein-db.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-protein-db.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-protein-db.so.0.0.0 libcoot-protein-db.so.0 || { rm -f libcoot-protein-db.so.0 && ln -s libcoot-protein-db.so.0.0.0 libcoot-protein-db.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-protein-db.so.0.0.0 libcoot-protein-db.so || { rm -f libcoot-protein-db.so && ln -s libcoot-protein-db.so.0.0.0 libcoot-protein-db.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-protein-db.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/protein_db' /usr/bin/install -c -m 644 protein_db.h protein_db_utils.h rna_db.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/protein_db' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/protein_db' /usr/bin/install -c -m 644 protein.db '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/protein_db' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' Making install in mini-mol make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-mini-mol.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-mini-mol.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/mini-mol; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/aarch64-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-mini-mol.so.0 -o .libs/libcoot-mini-mol.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-mini-mol.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so.0 || { rm -f libcoot-mini-mol.so.0 && ln -s libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so || { rm -f libcoot-mini-mol.so && ln -s libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-mini-mol.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/mini-mol' /usr/bin/install -c -m 644 mini-mol.hh mini-mol-utils.hh atom-quads.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/mini-mol' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' Making install in geometry make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-geometry.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-geometry.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/geometry; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/aarch64-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/cif-parse.o .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/mol-utils.o .libs/dictionary-residue.o .libs/link.o .libs/glyco-tools.o .libs/dict-utils.o .libs/chem_mods.o .libs/srs-interface.o .libs/protein-donor-acceptors.o .libs/lbg-graph.o .libs/dreiding.o .libs/main-chain.o .libs/residue-and-atom-specs.o .libs/intercept-3GP.o .libs/mol-utils-2.o .libs/hydrophobic.o .libs/cif-parse-link.o .libs/cif-parse-mon-lib.o .libs/read-metals-json.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-mini-mol -lcoot-utils -lcoot-compat -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-geometry.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-geometry.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-geometry.so.0.0.0 libcoot-geometry.so.0 || { rm -f libcoot-geometry.so.0 && ln -s libcoot-geometry.so.0.0.0 libcoot-geometry.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-geometry.so.0.0.0 libcoot-geometry.so || { rm -f libcoot-geometry.so && ln -s libcoot-geometry.so.0.0.0 libcoot-geometry.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-geometry.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-geometry.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/geometry' /usr/bin/install -c -m 644 protein-geometry.hh read-sbase.hh lbg-graph.hh srs-interface.hh dict-utils.hh dict-mismatches.hh energy-lib.hh match-results.hh hb-types.hh main-chain.hh residue-and-atom-specs.hh chem_mods.hh mol-utils.hh mol-utils-2.hh bonded-quad.hh hydrophobic.hh metal-ligand.hh pdbe-chem-comp-atom-depiction.hh pdbx-chem-comp-description-generator.hh gphl-chem-comp-info.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/geometry' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' Making install in lidia-core make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-lidia-core.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-lidia-core.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/lidia-core; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/aarch64-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/lbg-shared.o .libs/lbg-molfile.o .libs/lig-build.o .libs/rdkit-interface.o .libs/cod-types.o .libs/atom-types.o .libs/bond-record-container-t.o .libs/cod-atom-type-t.o .libs/cod-atom-types.o .libs/bond-table-record-t.o .libs/chemical-feature-clusters.o .libs/get-residue.o .libs/svg-molecule.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-utils -lcoot-mini-mol -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lsqlite3 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-lidia-core.so.0 -o .libs/libcoot-lidia-core.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-lidia-core.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so.0 || { rm -f libcoot-lidia-core.so.0 && ln -s libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so || { rm -f libcoot-lidia-core.so && ln -s libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-lidia-core.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/lidia-core' /usr/bin/install -c -m 644 lbg-shared.hh lbg-molfile.hh lig-build.hh rdkit-interface.hh use-rdkit.hh cod-types.hh neighbour-sorter.hh bond-record-container-t.hh bond-table-record-t.hh cod-atom-types.hh cod-atom-type-t.hh primes.hh chemical-feature-clusters.hh third-neighbour-info-t.hh get-residue.hh svg-molecule.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/lidia-core' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' Making install in coot-utils make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-coord-utils.la libcoot-coord-extras.la libcoot-map-utils.la libcoot-map-heavy.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-coord-utils.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo glyco-torsions.lo coot-least-squares.lo atom-overlaps.lo reduce.lo atom-selection-container.lo contact-info.lo coot-shelx-ins.lo secondary-structure-headers.lo plane-utils.lo c-beta-deviations.lo lidia-core-functions.lo atom-tools.lo bonded-atoms.lo bricks.lo helix-like.lo merge-atom-selections.lo contacts-by-bricks.lo stack-and-pair.lo fast-eigens.lo strand-fragments.lo sfcalc-genmap.lo cablam-markup.lo coot_shiftfield.lo shiftfield.lo fib-sphere.lo polar-atoms.lo 3d-texture.lo merge-molecules.lo fragment-container.lo mutate.lo merge-C-and-N-terminii.lo cylinder.lo cylinder-with-rotation-translation.lo oct.lo prideout-octasphere.lo simple-mesh.lo shapes.lo cmtz-interface.lo pugixml.lo parse-pisa.lo gltf-export.lo pae.lo ../lidia-core/libcoot-lidia-core.la ../protein_db/libcoot-protein-db.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-utils.o .libs/coot-coord-utils-nucleotides.o .libs/coot-rama.o .libs/coot-h-bonds.o .libs/hole.o .libs/read-sm-cif.o .libs/bonded-pairs.o .libs/helix-analysis.o .libs/elastic.o .libs/glyco-torsions.o .libs/coot-least-squares.o .libs/atom-overlaps.o .libs/reduce.o .libs/atom-selection-container.o .libs/contact-info.o .libs/coot-shelx-ins.o .libs/secondary-structure-headers.o .libs/plane-utils.o .libs/c-beta-deviations.o .libs/lidia-core-functions.o .libs/atom-tools.o .libs/bonded-atoms.o .libs/bricks.o .libs/helix-like.o .libs/merge-atom-selections.o .libs/contacts-by-bricks.o .libs/stack-and-pair.o .libs/fast-eigens.o .libs/strand-fragments.o .libs/sfcalc-genmap.o .libs/cablam-markup.o .libs/coot_shiftfield.o .libs/shiftfield.o .libs/fib-sphere.o .libs/polar-atoms.o .libs/3d-texture.o .libs/merge-molecules.o .libs/fragment-container.o .libs/mutate.o .libs/merge-C-and-N-terminii.o .libs/cylinder.o .libs/cylinder-with-rotation-translation.o .libs/oct.o .libs/prideout-octasphere.o .libs/simple-mesh.o .libs/shapes.o .libs/cmtz-interface.o .libs/pugixml.o .libs/parse-pisa.o .libs/gltf-export.o .libs/pae.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-lidia-core -lcoot-protein-db -lcoot-geometry -lcoot-utils -lcoot-mini-mol -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-utils.so.0 -o .libs/libcoot-coord-utils.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so.0 || { rm -f libcoot-coord-utils.so.0 && ln -s libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so || { rm -f libcoot-coord-utils.so && ln -s libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-utils.la libtool: warning: relinking 'libcoot-coord-extras.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-extras.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo jed-flip.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-extras.o .libs/coot-coord-lsq.o .libs/coot-tree-extras.o .libs/water-coordination.o .libs/lsq-improve.o .libs/coot-coord-utils-glyco.o .libs/jed-flip.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-extras.so.0 -o .libs/libcoot-coord-extras.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-extras.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so.0 || { rm -f libcoot-coord-extras.so.0 && ln -s libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so || { rm -f libcoot-coord-extras.so && ln -s libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-extras.la libtool: warning: relinking 'libcoot-map-utils.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-map-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo pepflip-using-difference-map.lo exp-fit.lo blob-line.lo slurp-map.lo find-water-baddies.lo diff-diff-map-peaks.lo mini-texture.lo positron.lo texture-as-floats.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -lz -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-utils.o .libs/peak-search.o .libs/peak-search-from-list.o .libs/trim.o .libs/xmap-stats.o .libs/maps-spherical.o .libs/pepflip-using-difference-map.o .libs/exp-fit.o .libs/blob-line.o .libs/slurp-map.o .libs/find-water-baddies.o .libs/diff-diff-map-peaks.o .libs/mini-texture.o .libs/positron.o .libs/texture-as-floats.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -lz -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-utils.so.0 -o .libs/libcoot-map-utils.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-utils.so.0.0.0 libcoot-map-utils.so.0 || { rm -f libcoot-map-utils.so.0 && ln -s libcoot-map-utils.so.0.0.0 libcoot-map-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-utils.so.0.0.0 libcoot-map-utils.so || { rm -f libcoot-map-utils.so && ln -s libcoot-map-utils.so.0.0.0 libcoot-map-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-utils.la libtool: warning: relinking 'libcoot-map-heavy.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-map-heavy.la -rpath /usr/lib/aarch64-linux-gnu coot-map-heavy.lo coot-fffear.lo spherical-harmonics.lo segmap.lo libcoot-map-utils.la libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-heavy.o .libs/coot-fffear.o .libs/spherical-harmonics.o .libs/segmap.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-utils -lcoot-coord-utils -lcoot-lidia-core -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-heavy.so.0 -o .libs/libcoot-map-heavy.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-heavy.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so.0 || { rm -f libcoot-map-heavy.so.0 && ln -s libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so || { rm -f libcoot-map-heavy.so && ln -s libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-heavy.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c coot-mmrrcc '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' libtool: warning: './libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: './libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-mmrrcc /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin/coot-mmrrcc /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coot-utils' /usr/bin/install -c -m 644 peak-search.hh coot-trim.hh coot-coord-utils.hh coot-map-utils.hh coot-coord-extras.hh coot-map-heavy.hh coot-lsq-types.h coot-shelx.hh coot-rama.hh xmap-stats.hh coot-h-bonds.hh lsq-improve.hh coot-hole.hh read-sm-cif.hh bonded-pairs.hh tree.hh helix-analysis.hh elastic.hh emma.hh glyco-torsions.hh coot-least-squares.hh coot-density-stats.hh atom-overlaps.hh reduce.hh atom-selection-container.hh contact-info.hh plane-utils.hh secondary-structure-headers.hh c-beta-deviations.hh jed-flip.hh lidia-core-functions.hh bonded-atoms.hh spherical-harmonics.hh helix-like.hh merge-atom-selections.hh contacts-by-bricks.hh amp-reso.hh stack-and-pair.hh atom-tools.hh segmap.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coot-utils' /usr/bin/install -c -m 644 fast-eigens.hh strand-fragments.hh sfcalc-genmap.hh cablam-markup.hh slurp-map.hh merge-molecules.hh arc-info.hh exp-fit.hh coot_shiftfield.h shiftfield.h fib-sphere.hh cis-peptide-info.hh pepflip-using-difference-map.hh blob-line.hh shape-types.hh shapes.hh polar-atoms.hh 3d-texture.hh fragment-container.hh map-index.hh atom-tree.hh jed-flip.hh atom-vertex.hh merge-C-and-N-terminii.hh simple-mesh.hh vertex.hh g_triangle.hh cylinder.hh cylinder-with-rotation-translation.hh oct.hh prideout-octasphere.hh cmtz-interface.hh mtz-column-auto-read.hh pugixml.hpp pugiconfig.hpp find-water-baddies.hh voidp-buffer.hh parse-pisa.hh diff-diff-map-peaks.hh tiny_gltf.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coot-utils' /usr/bin/install -c -m 644 json.hpp stb_image.h stb_image_write.h glyco-tree.hh positron.hh mini-texture.hh texture-as-floats.hh pae.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coot-utils' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' Making install in angles make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-AngleInfo.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-AngleInfo.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so.0 || { rm -f libcoot-AngleInfo.so.0 && ln -s libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so || { rm -f libcoot-AngleInfo.so && ln -s libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-AngleInfo.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/angles' /usr/bin/install -c -m 644 AngleInfo.h ncube.h wrapped-ncube.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/angles' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' Making install in ccp4mg-utils make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libccp4mg-utils.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4mg-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4mg-utils.so.0.0.0 libccp4mg-utils.so.0 || { rm -f libccp4mg-utils.so.0 && ln -s libccp4mg-utils.so.0.0.0 libccp4mg-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4mg-utils.so.0.0.0 libccp4mg-utils.so || { rm -f libccp4mg-utils.so && ln -s libccp4mg-utils.so.0.0.0 libccp4mg-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4mg-utils.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ccp4mg-utils' /usr/bin/install -c -m 644 geomutil.h mgtree.h cartesian.h matrix.h quat.h ppmutil.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ccp4mg-utils' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' Making install in db-main make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-db-main.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-db-main.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/db-main; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-db-main.la -rpath /usr/lib/aarch64-linux-gnu db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/db-main.o .libs/db-strands.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-mini-mol -lcoot-lidia-core -lcoot-coord-utils -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-db-main.so.0 -o .libs/libcoot-db-main.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-db-main.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-db-main.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-db-main.so.0.0.0 libcoot-db-main.so.0 || { rm -f libcoot-db-main.so.0 && ln -s libcoot-db-main.so.0.0.0 libcoot-db-main.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-db-main.so.0.0.0 libcoot-db-main.so || { rm -f libcoot-db-main.so && ln -s libcoot-db-main.so.0.0.0 libcoot-db-main.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-db-main.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-db-main.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/db-main' /usr/bin/install -c -m 644 db-main.hh db-strands.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/db-main' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' Making install in analysis make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-analysis.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-analysis.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/analysis; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-analysis.la -rpath /usr/lib/aarch64-linux-gnu bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo b-factor-histogram.lo daca.lo rna-backbone.lo ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/bfkurt.o .libs/mogul.o .libs/kolmogorov.o .libs/stats.o .libs/cablam.o .libs/typed-distances.o .libs/b-factor-histogram.o .libs/daca.o .libs/rna-backbone.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-utils -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-analysis.so.0 -o .libs/libcoot-analysis.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-analysis.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-analysis.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-analysis.so.0.0.0 libcoot-analysis.so.0 || { rm -f libcoot-analysis.so.0 && ln -s libcoot-analysis.so.0.0.0 libcoot-analysis.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-analysis.so.0.0.0 libcoot-analysis.so || { rm -f libcoot-analysis.so && ln -s libcoot-analysis.so.0.0.0 libcoot-analysis.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-analysis.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-analysis.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c coot-bfactan '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' libtool: warning: 'libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-bfactan /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin/coot-bfactan /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/analysis' /usr/bin/install -c -m 644 bfkurt.hh mogul-interface.hh stats.hh daca.hh rna-backbone.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/analysis' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' Making install in cootaneer make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcootaneer.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcootaneer.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootaneer.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootaneer.so.0.0.0 libcootaneer.so.0 || { rm -f libcootaneer.so.0 && ln -s libcootaneer.so.0.0.0 libcootaneer.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootaneer.so.0.0.0 libcootaneer.so || { rm -f libcootaneer.so && ln -s libcootaneer.so.0.0.0 libcootaneer.so; }; }) libtool: install: /usr/bin/install -c .libs/libcootaneer.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootaneer.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 cootaneer-llk-2.40.dat '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' Making install in ideal make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-ideal.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-ideal.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ideal; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-ideal.la -rpath /usr/lib/aarch64-linux-gnu simple-restraint.lo make-restraints.lo ng.lo chi-squareds.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo process-dfs-in-range.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo pull-restraint.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo neutron.lo ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpng16 -lm -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/simple-restraint.o .libs/make-restraints.o .libs/ng.o .libs/chi-squareds.o .libs/mods.o .libs/distortion.o .libs/chirals.o .libs/flanking.o .libs/gradients.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/process-dfs-in-range.o .libs/extra-restraints-kk.o .libs/simple-restraint-kk.o .libs/torsion-bonds.o .libs/coot-compare-residues.o .libs/link-restraints.o .libs/parallel-planes.o .libs/pull-restraint.o .libs/trans-peptide.o .libs/model-bond-deltas.o .libs/write-png.o .libs/zo-rama.o .libs/crankshaft.o .libs/phi-psi.o .libs/neutron.o -lpthread -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-heavy -lcoot-map-utils -lcoot-geometry -lcoot-coord-extras -lcoot-coord-utils -lcoot-mini-mol -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-ideal.so.0 -o .libs/libcoot-ideal.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-ideal.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ideal.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ideal.so.0.0.0 libcoot-ideal.so.0 || { rm -f libcoot-ideal.so.0 && ln -s libcoot-ideal.so.0.0.0 libcoot-ideal.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ideal.so.0.0.0 libcoot-ideal.so || { rm -f libcoot-ideal.so && ln -s libcoot-ideal.so.0.0.0 libcoot-ideal.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-ideal.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ideal.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c coot-mini-rsr coot-ligand-validation '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' /bin/bash ../libtool --mode=install /usr/bin/install -c mini-rsr-bin coot-ligand-validation-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' libtool: warning: './libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mini-rsr-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/mini-rsr-bin libtool: warning: './libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-ligand-validation-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-ligand-validation-bin /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ideal' /usr/bin/install -c -m 644 test-indexing.hh simple-restraint.hh pepflip.hh regularize-minimol.hh lograma.h zo-rama.hh phi-psi.hh parallel-planes.hh torsion-bonds.hh extra-restraints.hh model-bond-deltas.hh refinement-lights.hh refinement-results-t.hh rama-types.hh new-linked-residue-t.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ideal' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' Making install in ligand make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-ligand.la libcoot-res-tracer.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-ligand.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ligand; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-ligand.la -rpath /usr/lib/aarch64-linux-gnu ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo joining-residues.lo ligand-score-card.lo side-chain-densities.lo tube-finder.lo smith-waterman.lo side-chain.lo refine-isolated-chain.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/trace.o .libs/trace-2.o .libs/multi-peptide.o .libs/ligands-db.o .libs/joining-residues.o .libs/ligand-score-card.o .libs/side-chain-densities.o .libs/tube-finder.o .libs/smith-waterman.o .libs/side-chain.o .libs/refine-isolated-chain.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ideal -lcoot-map-heavy -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-analysis -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-ligand.so.0 -o .libs/libcoot-ligand.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-ligand.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ligand.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ligand.so.0.0.0 libcoot-ligand.so.0 || { rm -f libcoot-ligand.so.0 && ln -s libcoot-ligand.so.0.0.0 libcoot-ligand.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ligand.so.0.0.0 libcoot-ligand.so || { rm -f libcoot-ligand.so && ln -s libcoot-ligand.so.0.0.0 libcoot-ligand.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-ligand.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ligand.la libtool: warning: relinking 'libcoot-res-tracer.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ligand; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-res-tracer.la -rpath /usr/lib/aarch64-linux-gnu libres-tracer.lo rama-rsr-extend-fragments.lo new-residue-by-3-phi-psi.lo dSFMT.lo libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libres-tracer.o .libs/rama-rsr-extend-fragments.o .libs/new-residue-by-3-phi-psi.o .libs/dSFMT.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ligand -lcoot-ideal -lcoot-map-utils -lcoot-coord-utils -lcoot-mini-mol -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-res-tracer.so.0 -o .libs/libcoot-res-tracer.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-res-tracer.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-res-tracer.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so.0 || { rm -f libcoot-res-tracer.so.0 && ln -s libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so || { rm -f libcoot-res-tracer.so && ln -s libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-res-tracer.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-res-tracer.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c coot-findwaters coot-findligand coot-identify-protein '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' /bin/bash ../libtool --mode=install /usr/bin/install -c coot-findligand-bin coot-findwaters-bin coot-make-ligands-db coot-identify-protein-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-findligand-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-findligand-bin libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-findwaters-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-findwaters-bin libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-make-ligands-db /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-make-ligands-db libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-identify-protein-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-identify-protein-bin /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' /usr/bin/install -c -m 644 ligands-2016.db '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' /usr/bin/mkdir -p /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/assign-side-chains && ${TAR-tar} -x -C /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/assign-side-chains -f ../ligand/side-chain-data.tar.gz /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/assign-side-chains' /usr/bin/install -c -m 644 useable-grid-points-nstep=5,box_radius=5.0-charybdis.data '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/assign-side-chains' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ligand' /usr/bin/install -c -m 644 ligand.hh residue_by_phi_psi.hh wligand.hh monomer-utils.hh chi-angles.hh dunbrack.hh helix-placement.hh fast-ss-search.hh rigid-body.hh ideal-rna.hh rotamer.hh richardson-rotamer.hh torsion-general.hh primitive-chi-angles.hh dipole.hh base-pairing.hh backrub-rotamer.hh trace.hh multi-peptide.hh ligands-db.hh scored-coord.hh ligand-score-card.hh scored-molecule.hh map-point-cluster.hh side-chain-densities.hh tube-finder.hh smith-waterman.hh side-chain.hh new-residue-by-3-phi-psi.hh refine-isolated-chain.hh libres-tracer.hh dSFMT.h dSFMT-params.h dSFMT-params19937.h dSFMT-common.h scored-node.hh rama-rsr-extend-fragments.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ligand' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' Making install in coords make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-coords.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-coords.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coords; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coords.la -rpath /usr/lib/aarch64-linux-gnu Bond_lines.lo Cartesian.lo cos-sin.lo phenix-geo-bonds.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo rotamer-markup.lo loop-path.lo rama-plot-phi-psi.lo phi-psi-prob.lo ramachandran-validation.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../cootaneer/libcootaneer.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/phenix-geo-bonds.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/phenix-geo.o .libs/rotamer-markup.o .libs/loop-path.o .libs/rama-plot-phi-psi.o .libs/phi-psi-prob.o .libs/ramachandran-validation.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ligand -lcoot-coord-utils -lcoot-coord-extras -lcoot-geometry -lcoot-mini-mol -lcootaneer -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-coords.so.0 -o .libs/libcoot-coords.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coords.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coords.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coords.so.0.0.0 libcoot-coords.so.0 || { rm -f libcoot-coords.so.0 && ln -s libcoot-coords.so.0.0.0 libcoot-coords.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coords.so.0.0.0 libcoot-coords.so || { rm -f libcoot-coords.so && ln -s libcoot-coords.so.0.0.0 libcoot-coords.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coords.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coords.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coords' /usr/bin/install -c -m 644 Bond_lines.h Cartesian.h cos-sin.h mmdb.hh mmdb-extras.h utils.h mmdb-crystal.h Bond_lines_ext.h coot-close.hh phenix-geo.hh ramachandran-container.hh loop-path.hh rotamer-container.hh graphical-bonds-container.hh graphics-line.hh torus-description.hh rama-plot-phi-psi.hh phi-psi-prob.hh ramachandran-validation.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coords' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' Making install in density-contour make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-isosurface.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-isosurface.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/density-contour; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-isosurface.la -rpath /usr/lib/aarch64-linux-gnu Vectors.lo CIsoSurface.lo density-contour-triangles.lo occlusion.lo gaussian-surface.lo ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o .libs/occlusion.o .libs/gaussian-surface.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coords -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-isosurface.so.0 -o .libs/libcoot-isosurface.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-isosurface.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-isosurface.so.0.0.0 libcoot-isosurface.so.0 || { rm -f libcoot-isosurface.so.0 && ln -s libcoot-isosurface.so.0.0.0 libcoot-isosurface.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-isosurface.so.0.0.0 libcoot-isosurface.so || { rm -f libcoot-isosurface.so && ln -s libcoot-isosurface.so.0.0.0 libcoot-isosurface.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-isosurface.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/density-contour' /usr/bin/install -c -m 644 Vectors.h CIsoSurface.h density-contour-triangles.hh occlusion.hh transfer-occlusions.hh gaussian-surface.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/density-contour' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' Making install in skeleton make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-skeleton.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-skeleton.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/skeleton; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-skeleton.la -rpath /usr/lib/aarch64-linux-gnu dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-AngleInfo -lcoot-ideal -lcoot-geometry -lcoot-coords -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-skeleton.so.0 -o .libs/libcoot-skeleton.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-skeleton.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-skeleton.so.0.0.0 libcoot-skeleton.so.0 || { rm -f libcoot-skeleton.so.0 && ln -s libcoot-skeleton.so.0.0.0 libcoot-skeleton.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-skeleton.so.0.0.0 libcoot-skeleton.so || { rm -f libcoot-skeleton.so && ln -s libcoot-skeleton.so.0.0.0 libcoot-skeleton.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-skeleton.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/skeleton' /usr/bin/install -c -m 644 graphical_skel.h dm-utils.h BuildCas.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/skeleton' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' Making install in high-res make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-high-res.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-high-res.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/high-res; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-high-res.la -rpath /usr/lib/aarch64-linux-gnu high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-coords -lcoot-ligand -lcoot-map-utils -lcoot-lidia-core -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-high-res.so.0 -o .libs/libcoot-high-res.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-high-res.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-high-res.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-high-res.so.0.0.0 libcoot-high-res.so.0 || { rm -f libcoot-high-res.so.0 && ln -s libcoot-high-res.so.0.0.0 libcoot-high-res.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-high-res.so.0.0.0 libcoot-high-res.so || { rm -f libcoot-high-res.so && ln -s libcoot-high-res.so.0.0.0 libcoot-high-res.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-high-res.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-high-res.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/high-res' /usr/bin/install -c -m 644 high-res.hh coot-atom-graph.hh coot-node-info.hh sequence-assignment.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/high-res' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' Making install in build make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/build' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/build' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-cabuild.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-cabuild.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/build; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-cabuild.la -rpath /usr/lib/aarch64-linux-gnu CalphaBuild.lo ../angles/libcoot-AngleInfo.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/CalphaBuild.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-AngleInfo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-cabuild.so.0 -o .libs/libcoot-cabuild.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-cabuild.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-cabuild.so.0.0.0 libcoot-cabuild.so.0 || { rm -f libcoot-cabuild.so.0 && ln -s libcoot-cabuild.so.0.0.0 libcoot-cabuild.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-cabuild.so.0.0.0 libcoot-cabuild.so || { rm -f libcoot-cabuild.so && ln -s libcoot-cabuild.so.0.0.0 libcoot-cabuild.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-cabuild.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/build' /usr/bin/install -c -m 644 CalphaBuild.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/build' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/build' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/build' Making install in MoleculesToTriangles make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making install in CXXSurface make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libMoleculesToTrianglesCXXSurface.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXSurface.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXSurface.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so.0 || { rm -f libMoleculesToTrianglesCXXSurface.so.0 && ln -s libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so || { rm -f libMoleculesToTrianglesCXXSurface.so && ln -s libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so; }; }) libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXSurface.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXSurface.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 ctpl_boost.h CXXCoord.h CXXNewHood.h CXXSphereNode.h CXXTorusElement.h surface.h CXXAlloc.h CXXCreator.h CXXPointyBit.h CXXSphereTriangleEdge.h CXXTorusNode.h TokenIterator.h CXXBall.h CXXException.h CXXQADSurface.h CXXSphereTriangle.h CXXTorusTriangle.h.h CXXChargeTable.h CXXFFTSolventMap.h CXXSpace.h CXXSurface.h CXXTriangle.h CXXCircle.h CXXFortranFile.h CXXSphereElement.h CXXSurfaceMaker.h CXXUtils.h CXXCircleNode.h CXXMatrix4x4.h CXXSphereFlatTriangle.h CXXSurfaceVertex.h CXXVCN.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' Making install in CXXClasses make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libMoleculesToTrianglesCXXClasses.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libMoleculesToTrianglesCXXClasses.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libMoleculesToTrianglesCXXClasses.la -rpath /usr/lib/aarch64-linux-gnu libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-Representation.lo libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo libMoleculesToTrianglesCXXClasses_la-Light.lo libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo libMoleculesToTrianglesCXXClasses_la-ColorRule.lo libMoleculesToTrianglesCXXClasses_la-NRStuff.lo libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo libMoleculesToTrianglesCXXClasses_la-Renderer.lo libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-Quaternion.lo libMoleculesToTrianglesCXXClasses_la-Vector2.lo libMoleculesToTrianglesCXXClasses_la-Vector3.lo libMoleculesToTrianglesCXXClasses_la-lfit.lo libMoleculesToTrianglesCXXClasses_la-DishyBase.lo libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo ../../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o .libs/libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -lMoleculesToTrianglesCXXSurface -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXClasses.so.0 -o .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so.0 || { rm -f libMoleculesToTrianglesCXXClasses.so.0 && ln -s libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so || { rm -f libMoleculesToTrianglesCXXClasses.so && ln -s libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so; }; }) libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXClasses.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXClasses.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 Quaternion.hpp Vector.hpp Vector2.hpp Vector3.hpp AtomPropertyRampColorRule.h DirectedPositionedEntity.h BallsPrimitive.h DiscreteSegment.h Representation.h BondsPrimitive.h DisplayPrimitive.h RepresentationInstance.h BoxSectionPrimitive.h GLIndexType.h RotatedTranslatedScaledEntity.h CXXMatrix.h Light.h SceneSetup.h Callbacks.h LinesPrimitive.h SecondaryColorScheme.h Camera.h MolecularRepresentation.h SolidColorRule.h MolecularRepresentationInstance.h SpherePrimitive.h ColorNamesMap.h MyMolecule.h SticksPrimitive.h ColorRule.h NRStuff.h SurfacePrimitive.h ColorScheme.h Polyhedron.h VertexColorNormalPrimitive.h CompoundSelection.h PositionedEntity.h lfit.h CylinderPoint.h Renderer.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 oglPolyhedron.h CylindersPrimitive.h RendererGL.h RendererGLSL.hpp DishyBase.h FlatFanPrimitive.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 MoleculesToTrianglesCXXClasses.pc '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making install in pli make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-pli.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-pli.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pli; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-pli.la -rpath /usr/lib/aarch64-linux-gnu protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo sdf-interface.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/protein-ligand-interactions.o .libs/flev-annotations.o .libs/pi-stacking.o .libs/sdf-interface.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-geometry -lcoot-lidia-core -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-pli.so.0 -o .libs/libcoot-pli.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-pli.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-pli.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-pli.so.0.0.0 libcoot-pli.so.0 || { rm -f libcoot-pli.so.0 && ln -s libcoot-pli.so.0.0.0 libcoot-pli.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-pli.so.0.0.0 libcoot-pli.so || { rm -f libcoot-pli.so && ln -s libcoot-pli.so.0.0.0 libcoot-pli.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-pli.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-pli.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/pli' /usr/bin/install -c -m 644 flev-annotations.hh protein-ligand-interactions.hh pi-stacking.hh specs.hh sdf-interface.hh sdf-internal.hh sdf-interface-for-export.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/pli' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' Making install in greg-tests make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' Making install in python-tests make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' Making install in cootilus make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcootilus.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcootilus.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootilus.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootilus.so.0.0.0 libcootilus.so.0 || { rm -f libcootilus.so.0 && ln -s libcootilus.so.0.0.0 libcootilus.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootilus.so.0.0.0 libcootilus.so || { rm -f libcootilus.so && ln -s libcootilus.so.0.0.0 libcootilus.so; }; }) libtool: install: /usr/bin/install -c .libs/libcootilus.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootilus.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 nautilus_lib.pdb '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' Making install in pyrogen make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c pyrogen '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot_py_restraints.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot_py_restraints.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot_py_restraints.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0 || { rm -f libcoot_py_restraints.so.0 && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so || { rm -f libcoot_py_restraints.so && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot_py_restraints.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /bin/bash ../libtool --mode=install /usr/bin/install -c _pyrogen_swig.la pyrogen_boost.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_pyrogen_swig.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/pyrogen-swig.o .libs/restraints.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-ideal -lcoot-coord-utils -lcoot-lidia-core -lcoot-analysis -lcoot-geometry -lcoot-utils -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,_pyrogen_swig.so.0 -o .libs/_pyrogen_swig.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_pyrogen_swig.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0 || { rm -f _pyrogen_swig.so.0 && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so || { rm -f _pyrogen_swig.so && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so; }; }) libtool: install: /usr/bin/install -c .libs/_pyrogen_swig.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.la libtool: warning: relinking 'pyrogen_boost.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/restraints-boost.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-pli -lcoot-ideal -lcoot-coord-utils -lcoot-geometry -lcoot-coords -lcoot-lidia-core -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,pyrogen_boost.so.0 -o .libs/pyrogen_boost.so.0.0.0 libtool: install: /usr/bin/install -c .libs/pyrogen_boost.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so.0 || { rm -f pyrogen_boost.so.0 && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so || { rm -f pyrogen_boost.so && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so; }; }) libtool: install: /usr/bin/install -c .libs/pyrogen_boost.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.la libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' make install-exec-hook make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[5]: Nothing to be done for 'install-exec-hook'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' /usr/bin/install -c -m 644 pyrogen.py atom_types.py jay_util.py tautomer.py pyrogen_swig.py coot_git.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' Byte-compiling python modules... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py Byte-compiling python modules (optimized versions) ... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' Making install in data make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' Making install in rama-coeffs make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/rama/zo-tables' /usr/bin/install -c -m 644 all-non-pre-pro.tab coeffsolution.dat '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/rama/zo-tables' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' Making install in cho-models make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-models' /usr/bin/install -c -m 644 model-level-1-NAG-NAG-ASN-ASN.tab model-level-4-BMA-BETA1-6-BMA.tab model-level-5-MAN-ALPHA1-3-BMA.tab model-level-2-FUC-BETA1-3-NAG.tab model-level-4-BMA-BETA1-6-MAN.tab model-level-5-MAN-ALPHA1-3-MAN.tab model-level-2-FUC-BETA1-6-NAG.tab model-level-4-MAN-ALPHA1-3-BMA.tab model-level-5-MAN-ALPHA1-6-BMA.tab model-level-2-FUL-ALPHA1-3-NAG.tab model-level-4-MAN-ALPHA1-4-BMA.tab model-level-5-MAN-ALPHA1-6-MAN.tab model-level-2-FUL-ALPHA1-6-NAG.tab model-level-4-MAN-ALPHA1-6-BMA.tab model-level-5-NAG-BETA1-2-MAN.tab model-level-2-NAG-BETA1-4-NAG.tab model-level-4-MAN-ALPHA1-6-MAN.tab model-level-6-GAL-BETA1-4-NAG.tab model-level-3-BMA-BETA1-3-NAG.tab model-level-4-NAG-BETA1-4-BMA.tab model-level-6-MAN-ALPHA1-2-MAN.tab model-level-3-BMA-BETA1-4-NAG.tab model-level-5-BMA-BETA1-2-BMA.tab model-level-7-GLC-ALPHA1-3-MAN.tab model-level-3-MAN-ALPHA1-4-NAG.tab model-level-5-BMA-BETA1-6-MAN.tab model-level-4-BMA-BETA1-3-BMA.tab model-level-5-MAN-ALPHA1-2-MAN.tab '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-models' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' Making install in cho-acedrg make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-acedrg' /usr/bin/install -c -m 644 BMA-acedrg.cif FUC-acedrg.cif MAN-acedrg.cif NAG-acedrg.cif SIA-acedrg.cif XYP-acedrg.cif '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-acedrg' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' Making install in metal make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal' /usr/bin/install -c -m 644 metal-O-distance.table metal-S-distance.table metal-N-distance.table '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' /usr/bin/install -c -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz ligands.db syminfo.lib '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' Making install in man make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/man' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/man' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'coot.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot.1' /usr/bin/install -c -m 644 'coot-density-score-by-residue.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-density-score-by-residue.1' /usr/bin/install -c -m 644 'coot-compare-dictionaries.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-compare-dictionaries.1' /usr/bin/install -c -m 644 'coot-available-comp-id.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-available-comp-id.1' /usr/bin/install -c -m 644 'coot-bfactan.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-bfactan.1' /usr/bin/install -c -m 644 'coot-fix-nomenclature-errors.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-fix-nomenclature-errors.1' /usr/bin/install -c -m 644 'coot-make-shelx-restraints.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-make-shelx-restraints.1' /usr/bin/install -c -m 644 'coot-mini-rsr.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-mini-rsr.1' /usr/bin/install -c -m 644 'lidia.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/lidia.1' /usr/bin/install -c -m 644 'findwaters.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/findwaters.1' /usr/bin/install -c -m 644 'findligand.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/findligand.1' /usr/bin/install -c -m 644 'layla.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/layla.1' /usr/bin/install -c -m 644 'pyrogen.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/pyrogen.1' /usr/bin/install -c -m 644 'coot-identify-protein.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-identify-protein.1' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/man' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/man' Making install in rama-data make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data' /usr/bin/install -c -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' Making install in doc make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/doc' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/doc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/doc' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/doc' Making install in glTF make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/glTF' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/glTF' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/glTF' /usr/bin/install -c -m 644 grey-eyelashes-many-lashes.glb '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/glTF' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/glTF' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/glTF' Making install in pixmaps make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' Making install in icons make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps/icons' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps/icons' make[5]: Nothing to be done for 'install-exec-am'. for icon in hicolor_apps_48x48_coot.png hicolor_apps_64x64_coot.png hicolor_apps_96x96_coot.png hicolor_apps_256x256_coot.png hicolor_apps_scalable_coot.svg hicolor_apps_scalable_coot-layla.svg hicolor_actions_scalable_Stock-dialog-warning.svg hicolor_actions_scalable_Stock-dialog-information.svg; do \ THEME=` echo $icon | cut -d_ -f1`; \ CONTEXT=` echo $icon | cut -d_ -f2`; \ SIZE=` echo $icon | cut -d_ -f3`; \ ICONFILE=`echo $icon | cut -d_ -f4`; \ mkdir -p /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/icons/$THEME/$SIZE/$CONTEXT; \ /usr/bin/install -c -m 644 ./$icon /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/icons/$THEME/$SIZE/$CONTEXT/$ICONFILE; \ done; make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps/icons' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps/icons' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 add-alt-conf.png dna.svg probe-clash.svg add-alt-conf.svg edit-backbone.svg radacina_handcuffs-small.svg add-peptide-1.png edit-chi.png ramachandran.png add-peptide-1.svg edit-chi.svg refine-1.svg add-water.svg emsley.jpg refine.png anchor.svg env-distances.png regularize-1.svg aniso-atom.png env-distances.svg regularize.png aniso-atom.svg eugene.jpg renumber-residues.svg appointment-new.png flip-peptide.png reset-view-32.png atom-at-pointer.png flip-peptide.svg reset-view-32.svg atom-at-pointer.svg generic-display-objects.svg reset-view.png auto-fit-rotamer.png geom.svg reset-view.svg auto-fit-rotamer.svg ghosts.png residue-info.png azerbaijan2.svg '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 ghosts.svg residue-info.svg azerbaijan.svg gln-asn-b-factors.svg rigid-body.png calculate-ghosts.svg gln-asn-b-factorssvg.svg rigid-body.svg cell+symm.png glyco-structures.svg rotamers.png cell+symm.svg gnome-run.png rotamers.svg change-chain-id.svg go-to-atom.svg rtz.png rrz.png chiral.png go-to-ligand.svg rtz.svg rrz.svg chiral.svg gtk-connect-16.png scroll-wheel.svg connect-to-ccp4.svg gtk-font.png secondary-structure.svg connect-to-oca.svg gtk-open-16.png sequence-view.png connect-to-usf.svg gtk-open-24.png sequence-view.svg connect-to-world.svg gtk-open.png side-chain-180.png kevin.jpg side-chain-180.svg kevin-orig.jpg '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 smiles.png kleywegt.svg smiles.svg map.svg spin-view.png coot-favicon.png merge-molecules.svg spin-view.svg coot-icon.png mutate-auto-fit.svg stereo-view.svg coot-save.png mutate.svg stop.svg coot-save-symm.png panel-screenshot.png temperature.png crosshairs.png peptide-omega.png temperature.svg crosshairs.svg peptide-omega.svg torsion-general.svg delete.png phenixed.svg undo-1.png delete.svg pink-pointer.png undo-1.svg density-fit.svg pink-pointer.svg unknown-blob.png diff-map.png plane-distances.png unknown-blob.svg diff-map.svg plane-distances.svg water-diff-map.svg display-manager.png pointer-distances.png '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 water-drop.svg display-manager.svg pointer-distances.svg edit-undo.png edit-redo.png edit-delete.png python-logo.svg koppi-green-tick-64.png rygle-red-cross-64.png forest51690-dwcheckno-incomplete-64.png go-to-ligand.png go-to-atom.png azerbaijan.png add-water.png mutate.png mutate-auto-fit.png edit-backbone.png torsion-general.png anchor.png regularize-1.png refine-1.png stock-zoom-follow-window-12.svg stock-zoom-follow-window-12.png rama_all.png rama_gly.png rama_pro.png rama_non_gly_pro.png curlew-long.png curlew-128-filled.svg refmac.svg broom.png broom.svg jed-flip-reverse.svg layla_3c.svg layla_4c.svg layla_5c.svg layla_6arom.svg layla_6c.svg layla_7c.svg layla_8c.svg '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 layla_charge_tool.svg layla_delete_hydrogens_tool.svg layla_double_bond.svg layla_format_tool.svg layla_geometry_tool-dark.svg layla_geometry_tool.svg layla_key.svg layla_move_tool.svg layla_single_bond.svg layla_triple_bond.svg rama2_all.png rama2_gly.png rama2_pro.png rama2_non_gly_pro.png rama2_ileval.png rama2_pre_pro.png rama2_non_gly_pro_pre_pro_ileval.png '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/images' /usr/bin/install -c -m 644 coot-1.png '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/images' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' Making install in textures make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/textures' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/textures' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/textures' /usr/bin/install -c -m 644 hud-label-nbc-rama.png hud-tooltip.png happy-face-marker.png sad-face-marker.png rama-plot-pro-normal.png rama-plot-pro-outlier.png rama-plot-gly-normal.png rama-plot-gly-outlier.png rama-plot-other-normal.png rama-plot-other-outlier.png rama-standard-inverted.png hud-label-NBC-small.png hud-label-pull-small.png hud-label-chiral-small.png hud-label-rama-small.png hud-label-rota-small.png anchor-for-fixed-atoms.png refinement-dialog-arrrow-highlighted.png refinement-dialog-arrrow.png angry-diego.svg angry-diego.png chiral-volume-outlier-marker.png '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/textures' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/textures' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/textures' Making install in sounds make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/sounds' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/sounds' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/sounds' /usr/bin/install -c -m 644 sounds.readme 325112_3246658-lq-fisch12345-success.ogg 538546_3725923-lq-Sjonas_Rising.ogg 538548_3725923-lq-Sjonas-Select-3.ogg 538549_3725923-lq-Sjonas-Select-2.ogg 538550_3725923-lq-Sjonas88-Deep-tone.ogg 538551_3725923-lq-Sjonas88-3-select.ogg 538553_3725923-lq-Sjonas88-Stars.ogg 538554_3725923-lq-Sjonas88-success.ogg cdonahueucsd-337132_5955158-lq.ogg pop-dodrio-554022_1433422-lq.ogg '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/sounds' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/sounds' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/sounds' Making install in api make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/api' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/api' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-api.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-api.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/api; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../ligand/libcoot-ligand.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../analysis/libcoot-analysis.la ../density-contour/libcoot-isosurface.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -Wl,-z,relro -o libcoot-api.la -rpath /usr/lib/aarch64-linux-gnu coot-molecule.lo coot-colour.lo add-terminal-residue.lo rama-plot-phi-psi.lo colour-functions.lo coot-molecule-maps.lo coot-molecule-merge-molecules.lo coot-molecule-bonds.lo coot-molecule-validation.lo molecules-container-modelling.lo molecules-container.lo make-a-dodec.lo molecules-container-ligand-fitting.lo phi-psi-prob.lo coot-molecule-moltris.lo coot-molecule-replace-fragment.lo coot-molecule-backup.lo coot-molecule-bonds-instanced.lo molecules-container-mmrrcc.lo molecules-container-gltf.lo coot-molecule-refine.lo molecules-container-superpose.lo rigid-body-fit.lo moorhen-h-bonds.lo molecules-container-bucca-ml-growing.lo instancing.lo molecules-container-maps.lo coot-molecule-change-chain-id.lo blender-mesh.lo coot-molecule-blender.lo molecules-container-blender.lo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-molecule.o .libs/coot-colour.o .libs/add-terminal-residue.o .libs/rama-plot-phi-psi.o .libs/colour-functions.o .libs/coot-molecule-maps.o .libs/coot-molecule-merge-molecules.o .libs/coot-molecule-bonds.o .libs/coot-molecule-validation.o .libs/molecules-container-modelling.o .libs/molecules-container.o .libs/make-a-dodec.o .libs/molecules-container-ligand-fitting.o .libs/phi-psi-prob.o .libs/coot-molecule-moltris.o .libs/coot-molecule-replace-fragment.o .libs/coot-molecule-backup.o .libs/coot-molecule-bonds-instanced.o .libs/molecules-container-mmrrcc.o .libs/molecules-container-gltf.o .libs/coot-molecule-refine.o .libs/molecules-container-superpose.o .libs/rigid-body-fit.o .libs/moorhen-h-bonds.o .libs/molecules-container-bucca-ml-growing.o .libs/instancing.o .libs/molecules-container-maps.o .libs/coot-molecule-change-chain-id.o .libs/blender-mesh.o .libs/coot-molecule-blender.o .libs/molecules-container-blender.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lMoleculesToTrianglesCXXClasses -lMoleculesToTrianglesCXXSurface -lcoot-ligand -lcoot-pli -lcoot-ideal -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-analysis -lcoot-isosurface -lcoot-map-heavy -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coords -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-api.so.0 -o .libs/libcoot-api.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-api.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-api.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-api.so.0.0.0 libcoot-api.so.0 || { rm -f libcoot-api.so.0 && ln -s libcoot-api.so.0.0.0 libcoot-api.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-api.so.0.0.0 libcoot-api.so || { rm -f libcoot-api.so && ln -s libcoot-api.so.0.0.0 libcoot-api.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-api.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-api.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /bin/bash ../libtool --mode=install /usr/bin/install -c _coot_headless_api.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_coot_headless_api.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/api; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined -Wl,-z,relro -o _coot_headless_api.la -rpath /usr/lib/python3/dist-packages _coot_headless_api_la-wrap-coot-api.lo _coot_headless_api_la-molecules-container-swig.lo libcoot-api.la -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/_coot_headless_api_la-wrap-coot-api.o .libs/_coot_headless_api_la-molecules-container-swig.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-api -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot_headless_api.so.0 -o .libs/_coot_headless_api.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_coot_headless_api.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot_headless_api.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot_headless_api.so.0.0.0 _coot_headless_api.so.0 || { rm -f _coot_headless_api.so.0 && ln -s _coot_headless_api.so.0.0.0 _coot_headless_api.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot_headless_api.so.0.0.0 _coot_headless_api.so || { rm -f _coot_headless_api.so && ln -s _coot_headless_api.so.0.0.0 _coot_headless_api.so; }; }) libtool: install: /usr/bin/install -c .libs/_coot_headless_api.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot_headless_api.la libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/install -c -m 644 coot_headless_api.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' Byte-compiling python modules... coot_headless_api.py Byte-compiling python modules (optimized versions) ... coot_headless_api.py /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/api' /usr/bin/install -c -m 644 coot-molecule.hh make-a-dodec.hh lsq-results.hh colour-functions.hh gensurf.hh validation-information.hh coot-colour.hh ghost-molecule-display.hh residue-validation-information.hh molecules-container.hh ncs.hh geometry-graphs.hh header-info.hh rama-plot-phi-psi.hh superpose-results.hh add-terminal-residue.hh interfaces.hh moorhen-h-bonds.hh atom-pull.hh rigid-body-fit.hh svg-store-key.hh phi-psi-prob.hh saved-strand-info.hh simple-molecule.hh generic-3d-lines.hh cell.hh coot-simple-molecule.hh api-cell.hh bond-colour.hh make-instanced-graphical-bonds.hh symmetry-info.hh instancing.hh merge-molecule-results-info-t.hh coot-molecule-bonds.hh clipper-ccp4-map-file-wrapper.hh blender-mesh.hh plain-atom-overlap.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/api' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/api' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/api' Making install in layla make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-layla.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-layla.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/layla; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-layla.la -rpath /usr/lib/aarch64-linux-gnu layla_embedded.lo generators.lo notifier.lo signals.lo state.lo ui.lo utils.lo ligand_editor_canvas/core.lo ligand_editor_canvas.lo ligand_editor_canvas/model.lo ligand_editor_canvas/tools.lo ligand_editor_canvas/render.lo python_utils.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/layla_embedded.o .libs/generators.o .libs/notifier.o .libs/signals.o .libs/state.o .libs/ui.o .libs/utils.o ligand_editor_canvas/.libs/core.o .libs/ligand_editor_canvas.o ligand_editor_canvas/.libs/model.o ligand_editor_canvas/.libs/tools.o ligand_editor_canvas/.libs/render.o .libs/python_utils.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-layla.so.0 -o .libs/libcoot-layla.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-layla.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-layla.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-layla.so.0.0.0 libcoot-layla.so.0 || { rm -f libcoot-layla.so.0 && ln -s libcoot-layla.so.0.0.0 libcoot-layla.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-layla.so.0.0.0 libcoot-layla.so || { rm -f libcoot-layla.so && ln -s libcoot-layla.so.0.0.0 libcoot-layla.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-layla.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-layla.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c layla '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' libtool: warning: 'libcoot-layla.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/layla /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin/layla /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/layla' /usr/bin/install -c -m 644 layla_embedded.hpp generators.hpp notifier.hpp ui.hpp utils.hpp state.hpp ligand_editor_canvas/core.hpp ligand_editor_canvas/model.hpp ligand_editor_canvas/tools.hpp ligand_editor_canvas/render.hpp ligand_editor_canvas.hpp python_utils.hpp '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/layla' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/ui' /usr/bin/install -c -m 644 layla.ui '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/ui' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' Making install in validation-graphs make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-validation-graphs.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-validation-graphs.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/validation-graphs; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-validation-graphs.la -rpath /usr/lib/aarch64-linux-gnu residue-validation-information.lo validation-graph-widget.lo validation-graphs.lo validation-information.lo sequence-view-widget.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/residue-validation-information.o .libs/validation-graph-widget.o .libs/validation-graphs.o .libs/validation-information.o .libs/sequence-view-widget.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ideal -lcoot-map-heavy -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-analysis -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-validation-graphs.so.0 -o .libs/libcoot-validation-graphs.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-validation-graphs.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-validation-graphs.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so.0 || { rm -f libcoot-validation-graphs.so.0 && ln -s libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so || { rm -f libcoot-validation-graphs.so && ln -s libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-validation-graphs.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-validation-graphs.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/test-validation' /usr/bin/install -c -m 644 residue-validation-information.hh validation-information.hh validation-graphs.hh validation-graph-widget.hh sequence-view-widget.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/test-validation' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' Making install in src make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make install-am make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcootsumo.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcootsumo.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/src; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootsumo.la -rpath /usr/lib/aarch64-linux-gnu init_coot_as_python_module.lo boids.lo boot-python.lo atom-overlaps.lo git-revision-count.lo scm-boot-guile.lo c-interface-analysis.lo c-interface-bonds.lo c-interface-build.lo c-interface-build-morph.lo c-interface-build-main-chain.lo c-interface-build-side-chain.lo c-interface-build-symmetry.lo c-interface-build-gui.lo c-interface-curlew.lo c-interface-database.lo c-interface-gui.lo c-interface-gtk2.lo c-interface-info.lo c-interface-kk.lo c-interface-image.lo c-interface-ligands-gui.lo c-interface-ligands.lo c-interface-maps.lo c-interface-mmdb.lo c-interface-mogul.lo c-interface-mogul-scripting.lo c-interface-mutate.lo c-interface-ncs.lo c-interface-network.lo c-interface-nucleotides.lo c-interface-pisa.lo c-interface-pisa-gui.lo c-interface-preferences.lo c-interface-python.lo c-interface-refine.lo c-interface-residues.lo c-interface-refmac.lo simple-refmac.lo c-interface-scm.lo c-interface-sequence.lo c-interface-sfs.lo c-interface-sharpen.lo c-interface-superpose.lo c-interface-validate.lo c-interface-view.lo c-interface-widgets.lo c-interface-waters.lo c-interface-waters-gui.lo c-interface.lo c-interface-test.lo cc-interface-alignment.lo cc-interface-graphics.lo cc-interface-merge.lo cc-interface-molecular-representation.lo cc-interface-molecular-symmetry.lo cc-interface-scripting.lo cc-interface-map-utils.lo cc-interface-png.lo cc-interface-user-defined-atom-colours.lo cfc.lo change-dir.lo cmtz-interface.lo command-line.lo command-line-extern.lo coot-application.lo coot-colour.lo coot-align.lo coot-nomenclature.lo coot-glue-gtk2.lo coot-glue-gtk2-python.lo coot-hydrogens.lo coot-phi-psi.lo coot_pythonmodule.lo coot-setup-python.lo coot_wrap_guile.lo curlew-gtk4.lo draw.lo graphics-info-tick-function.lo drag-and-drop.lo draw-generic-display-objects.lo dynamic-validation.lo eyes.lo event-controller-callbacks.lo fit-loop-gui.lo flev.lo framebuffer.lo old-generic-display-object.lo gaussian-surface.lo generic-objects.lo geometry-graphs.lo get-residue.lo get-monomer.lo gl-rama-plot.lo globjects.lo globularize.lo graphics-info.lo graphics-info-defines.lo graphics-info-defines-gtk4.lo graphics-info-draw.lo graphics-info-draw-models.lo graphics-info-graphs.lo graphics-info-gui.lo graphics-info-init.lo graphics-info-intermediate.lo graphics-info-modelling.lo graphics-info-navigation.lo graphics-info-navigation-gtk2.lo graphics-info-preferences.lo graphics-info-network.lo graphics-info-mutate.lo graphics-info-lsq.lo graphics-info-opengl.lo graphics-info-pick.lo graphics-info-refmac.lo graphics-info-render.lo graphics-info-render-scene.lo graphics-info-residues.lo graphics-info-refine.lo graphics-info-scripting.lo graphics-info-state.lo graphics-info-statics.lo graphics-info-superpose.lo graphics-info-trackball.lo graphics-ligand-view.lo graphics-ligand-mesh-molecule.lo gl-matrix.lo gtkglarea-rama-plot.lo gtk-manual.lo gtk-widget-conversion-utils.lo gtk-utils.lo HUDMesh.lo HUDTextureMesh.lo Instanced-Markup-Mesh.lo init-from-gtkbuilder.lo key-bindings.lo LinesMesh.lo LigandViewMesh.lo lbg-callbacks-outer.lo lbg-interface.lo Model.lo make-a-dodec.lo matrix-utils.lo Mesh.lo Mesh-from-glTF.lo Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds.lo meshed-generic-display-object.lo model-molecule-meshes.lo molecule-class-info.lo molecule-class-info-alignment.lo molecule-class-info-analysis.lo molecule-class-info-bonds.lo molecule-class-info-build.lo molecule-class-info-maps.lo molecule-class-info-maps-2.lo molecule-class-info-molecular-symmetry.lo molecule-class-info-kdc.lo molecule-class-info-dots.lo molecule-class-info-dots-internal.lo molecule-class-info-other.lo molecule-class-info-mutate.lo molecule-class-info-residues.lo molecule-class-info-refine.lo molecule-class-info-kk.lo molecule-class-info-surface.lo molecule-class-info-string.lo molecule-class-info-patterson.lo molecule-class-info-ncs.lo molecule-class-info-mol-tris.lo molecule-class-info-widget-work.lo molecule-class-info-geometry.lo molecular-mesh-generator.lo molecular-mesh-generator-mol-tris.lo obj_loader.lo pick.lo positron-plot.lo probe-clash-score.lo protein_db-interface.lo pumpkin.lo python-classes.lo Particle.lo read-phs.lo read-cif.lo rama_mousey.lo rama_plot_with_canvas.lo text-rendering-utils.lo restraints-editor.lo rsr-functions.lo screendump-tga.lo sdf-interface.lo sequence-view.lo seq-view-interface.lo Shader.lo sound.lo startup-utils.lo testing.lo testing-2.lo Texture.lo TextureMesh.lo tomo-tools.lo trackball.lo user-mods.lo xmap-utils.lo rama-plot-phi-psi.lo spherical-density.lo single-map-properties-dialog.lo validation.lo view.lo widget-from-builder.lo -fopenmp ../api/libcoot-api.la ../pli/libcoot-pli.la ../layla/libcoot-layla.la ../ligand/libcoot-res-tracer.la ../ligand/libcoot-ligand.la ../validation-graphs/libcoot-validation-graphs.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../compat/libcoot-compat.la -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lm -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lfreetype -lsqlite3 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/init_coot_as_python_module.o .libs/boids.o .libs/boot-python.o .libs/atom-overlaps.o .libs/git-revision-count.o .libs/scm-boot-guile.o .libs/c-interface-analysis.o .libs/c-interface-bonds.o .libs/c-interface-build.o .libs/c-interface-build-morph.o .libs/c-interface-build-main-chain.o .libs/c-interface-build-side-chain.o .libs/c-interface-build-symmetry.o .libs/c-interface-build-gui.o .libs/c-interface-curlew.o .libs/c-interface-database.o .libs/c-interface-gui.o .libs/c-interface-gtk2.o .libs/c-interface-info.o .libs/c-interface-kk.o .libs/c-interface-image.o .libs/c-interface-ligands-gui.o .libs/c-interface-ligands.o .libs/c-interface-maps.o .libs/c-interface-mmdb.o .libs/c-interface-mogul.o .libs/c-interface-mogul-scripting.o .libs/c-interface-mutate.o .libs/c-interface-ncs.o .libs/c-interface-network.o .libs/c-interface-nucleotides.o .libs/c-interface-pisa.o .libs/c-interface-pisa-gui.o .libs/c-interface-preferences.o .libs/c-interface-python.o .libs/c-interface-refine.o .libs/c-interface-residues.o .libs/c-interface-refmac.o .libs/simple-refmac.o .libs/c-interface-scm.o .libs/c-interface-sequence.o .libs/c-interface-sfs.o .libs/c-interface-sharpen.o .libs/c-interface-superpose.o .libs/c-interface-validate.o .libs/c-interface-view.o .libs/c-interface-widgets.o .libs/c-interface-waters.o .libs/c-interface-waters-gui.o .libs/c-interface.o .libs/c-interface-test.o .libs/cc-interface-alignment.o .libs/cc-interface-graphics.o .libs/cc-interface-merge.o .libs/cc-interface-molecular-representation.o .libs/cc-interface-molecular-symmetry.o .libs/cc-interface-scripting.o .libs/cc-interface-map-utils.o .libs/cc-interface-png.o .libs/cc-interface-user-defined-atom-colours.o .libs/cfc.o .libs/change-dir.o .libs/cmtz-interface.o .libs/command-line.o .libs/command-line-extern.o .libs/coot-application.o .libs/coot-colour.o .libs/coot-align.o .libs/coot-nomenclature.o .libs/coot-glue-gtk2.o .libs/coot-glue-gtk2-python.o .libs/coot-hydrogens.o .libs/coot-phi-psi.o .libs/coot_pythonmodule.o .libs/coot-setup-python.o .libs/coot_wrap_guile.o .libs/curlew-gtk4.o .libs/draw.o .libs/graphics-info-tick-function.o .libs/drag-and-drop.o .libs/draw-generic-display-objects.o .libs/dynamic-validation.o .libs/eyes.o .libs/event-controller-callbacks.o .libs/fit-loop-gui.o .libs/flev.o .libs/framebuffer.o .libs/old-generic-display-object.o .libs/gaussian-surface.o .libs/generic-objects.o .libs/geometry-graphs.o .libs/get-residue.o .libs/get-monomer.o .libs/gl-rama-plot.o .libs/globjects.o .libs/globularize.o .libs/graphics-info.o .libs/graphics-info-defines.o .libs/graphics-info-defines-gtk4.o .libs/graphics-info-draw.o .libs/graphics-info-draw-models.o .libs/graphics-info-graphs.o .libs/graphics-info-gui.o .libs/graphics-info-init.o .libs/graphics-info-intermediate.o .libs/graphics-info-modelling.o .libs/graphics-info-navigation.o .libs/graphics-info-navigation-gtk2.o .libs/graphics-info-preferences.o .libs/graphics-info-network.o .libs/graphics-info-mutate.o .libs/graphics-info-lsq.o .libs/graphics-info-opengl.o .libs/graphics-info-pick.o .libs/graphics-info-refmac.o .libs/graphics-info-render.o .libs/graphics-info-render-scene.o .libs/graphics-info-residues.o .libs/graphics-info-refine.o .libs/graphics-info-scripting.o .libs/graphics-info-state.o .libs/graphics-info-statics.o .libs/graphics-info-superpose.o .libs/graphics-info-trackball.o .libs/graphics-ligand-view.o .libs/graphics-ligand-mesh-molecule.o .libs/gl-matrix.o .libs/gtkglarea-rama-plot.o .libs/gtk-manual.o .libs/gtk-widget-conversion-utils.o .libs/gtk-utils.o .libs/HUDMesh.o .libs/HUDTextureMesh.o .libs/Instanced-Markup-Mesh.o .libs/init-from-gtkbuilder.o .libs/key-bindings.o .libs/LinesMesh.o .libs/LigandViewMesh.o .libs/lbg-callbacks-outer.o .libs/lbg-interface.o .libs/Model.o .libs/make-a-dodec.o .libs/matrix-utils.o .libs/Mesh.o .libs/Mesh-from-glTF.o .libs/Mesh-from-graphical-bonds-instanced.o .libs/Mesh-from-graphical-bonds.o .libs/meshed-generic-display-object.o .libs/model-molecule-meshes.o .libs/molecule-class-info.o .libs/molecule-class-info-alignment.o .libs/molecule-class-info-analysis.o .libs/molecule-class-info-bonds.o .libs/molecule-class-info-build.o .libs/molecule-class-info-maps.o .libs/molecule-class-info-maps-2.o .libs/molecule-class-info-molecular-symmetry.o .libs/molecule-class-info-kdc.o .libs/molecule-class-info-dots.o .libs/molecule-class-info-dots-internal.o .libs/molecule-class-info-other.o .libs/molecule-class-info-mutate.o .libs/molecule-class-info-residues.o .libs/molecule-class-info-refine.o .libs/molecule-class-info-kk.o .libs/molecule-class-info-surface.o .libs/molecule-class-info-string.o .libs/molecule-class-info-patterson.o .libs/molecule-class-info-ncs.o .libs/molecule-class-info-mol-tris.o .libs/molecule-class-info-widget-work.o .libs/molecule-class-info-geometry.o .libs/molecular-mesh-generator.o .libs/molecular-mesh-generator-mol-tris.o .libs/obj_loader.o .libs/pick.o .libs/positron-plot.o .libs/probe-clash-score.o .libs/protein_db-interface.o .libs/pumpkin.o .libs/python-classes.o .libs/Particle.o .libs/read-phs.o .libs/read-cif.o .libs/rama_mousey.o .libs/rama_plot_with_canvas.o .libs/text-rendering-utils.o .libs/restraints-editor.o .libs/rsr-functions.o .libs/screendump-tga.o .libs/sdf-interface.o .libs/sequence-view.o .libs/seq-view-interface.o .libs/Shader.o .libs/sound.o .libs/startup-utils.o .libs/testing.o .libs/testing-2.o .libs/Texture.o .libs/TextureMesh.o .libs/tomo-tools.o .libs/trackball.o .libs/user-mods.o .libs/xmap-utils.o .libs/rama-plot-phi-psi.o .libs/spherical-density.o .libs/single-map-properties-dialog.o .libs/validation.o .libs/view.o .libs/widget-from-builder.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-api -lcoot-pli -lcoot-layla -lcoot-res-tracer -lcoot-ligand -lcoot-validation-graphs -lcoot-lidia-core -lcoot-isosurface -lcoot-cabuild -lcoot-skeleton -lcoot-AngleInfo -lcoot-db-main -lcoot-high-res -lcoot-ideal -lcoot-geometry -lcoot-coords -lccp4mg-utils -lcoot-map-heavy -lcoot-map-utils -lcoot-coord-extras -lcoot-coord-utils -lcoot-utils -lcoot-mini-mol -lcoot-analysis -lcoot-protein-db -lcootilus -lcootaneer -lMoleculesToTrianglesCXXClasses -lMoleculesToTrianglesCXXSurface -lcoot-compat -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lpython3.13 -lepoxy -lgsl -lgslcblas -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lfreetype -lsqlite3 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -fopenmp -Wl,-soname -Wl,libcootsumo.so.0 -o .libs/libcootsumo.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcootsumo.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootsumo.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootsumo.so.0.0.0 libcootsumo.so.0 || { rm -f libcootsumo.so.0 && ln -s libcootsumo.so.0.0.0 libcootsumo.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootsumo.so.0.0.0 libcootsumo.so || { rm -f libcootsumo.so && ln -s libcootsumo.so.0.0.0 libcootsumo.so; }; }) libtool: install: /usr/bin/install -c .libs/libcootsumo.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootsumo.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c coot coot-density-score-by-residue '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' /bin/bash ../libtool --mode=install /usr/bin/install -c Coot coot-density-score-by-residue-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' libtool: warning: 'libcootsumo.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../density-contour/libcoot-isosurface.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../layla/libcoot-layla.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coords/libcoot-coords.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/Coot /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/Coot libtool: warning: 'libcootsumo.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coords/libcoot-coords.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ligand/libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-density-score-by-residue-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-density-score-by-residue-bin /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /bin/bash ../libtool --mode=install /usr/bin/install -c _coot.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_coot.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/src; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined libcootsumo.la ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../geometry/libcoot-geometry.la ../pli/libcoot-pli.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o _coot.la -rpath /usr/lib/python3/dist-packages coot.lo coot_wrap_python.lo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot.o .libs/coot_wrap_python.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcootsumo -lcoot-coord-utils -lcoot-coords -lcoot-geometry -lcoot-pli -lcoot-lidia-core -lcoot-utils -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot.so.0 -o .libs/_coot.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_coot.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot.so.0.0.0 _coot.so.0 || { rm -f _coot.so.0 && ln -s _coot.so.0.0.0 _coot.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot.so.0.0.0 _coot.so || { rm -f _coot.so && ln -s _coot.so.0.0.0 _coot.so; }; }) libtool: install: /usr/bin/install -c .libs/_coot.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot.la libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' make install-exec-hook make[6]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[6]: Nothing to be done for 'install-exec-hook'. make[6]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/shaders' /usr/bin/install -c -m 644 atom-label.shader blur.shader central-cube.shader hud-text.shader hud-bars.shader hud-labels.shader map.shader model.shader screen.shader moleculestotriangles.shader instanced-objects.shader particles.shader lines.shader draw-map-cap.shader lines-pulse.shader rama-balls.shader hud-geometry-tooltip-text.shader residue-markers.shader extra-distance-restraints.shader residue-markers-for-ssao.shader model-as-mesh.shader ligand-view.shader symmetry-atoms-lines.shader rama-plot-phi-psi-markers.shader rama-plot-axes-and-ticks.shader hud-image-texture.shader hud-lines.shader depth-of-field.shader blur-x.shader blur-y.shader texture-meshes.shader camera-facing-quad-shader-for-testing.shader outline-of-active-residue.shader meshes.shader meshes-for-shadow-map.shader instanced-meshes-for-shadow-map.shader meshes-with-shadows.shader instanced-meshes-with-shadows.shader meshes-for-ssao.shader effects.shader '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/shaders' /usr/bin/install -c -m 644 9.ssao_blur.shader 9.ssao_geometry.shader 9.ssao.shader instanced-meshes-for-ssao.shader texture-meshes-for-ssao.shader texture-meshes-with-shadows.shader texture-meshes-shadow-map.shader shadow-map-image-texture.shader rotation-centre-cross-hairs-for-ssao.shader background-image.shader '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/shaders' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/glade' /usr/bin/install -c -m 644 geometry_graphs_builder.glade '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/glade' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/install -c -m 644 coot.py coot.pth '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' Byte-compiling python modules... coot.py Byte-compiling python modules (optimized versions) ... coot.py /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/install -c coot.py coot.pth '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot' /usr/bin/install -c -m 644 crunch-model.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' Making install in ui make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/ui' /usr/bin/install -c -m 644 coot-gtk4.ui restraints-editor.ui preferences-gtk4.ui single-map-properties-dialog-gtk4.ui '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/ui' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/appdata' /usr/bin/install -c -m 644 coot.appdata.xml '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/appdata' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/applications' /usr/bin/install -c -m 644 coot.desktop '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/applications' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 standard-residues.pdb '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_install --buildsystem cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/coot-1.1.09+dfsg -B/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootapi.so.1.1 -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootapi.so -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/standard-residues.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/syminfo.lib -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/Makefile -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/Makefile.in -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/theor-helix-70.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-BETA1-4.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-ALPHA1-6.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-ALPHA1-3.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-ALPHA1-2.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-XYP-BMA.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-NAG-ASN.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-6.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-4.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-3.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-2.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA2-3.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA1-6.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA1-3.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA1-2.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-NAG-core-NAG-SER.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-FUC-core-ALPHA1-6.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-FUC-core-ALPHA1-3.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-FUC-core-ALPHA1-2.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/XYP-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/SIA-pyranose-via-ALPHA2-3.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/NAG-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/Makefile.am -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/MAN-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/GLC-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/GAL-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/FUL-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/FUC-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/BMA-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/ASN-NAG-via-NAG-ASN.pdb -- Up-to-date: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/Makefile -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/Makefile.in -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-val.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-trp.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-thr.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-ser.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-pro.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-phetyr.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-met.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-lys.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-leu.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-ile.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-his.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-glu.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-gln.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-cys.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-asp.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-asn.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-arg.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rama500-pro.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rama500-prepro.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rama500-gly-sym.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rama500-general.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/Makefile.am -- Up-to-date: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/Makefile -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/Makefile.in -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/metal-S-distance.table -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/metal-O-distance.table -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/metal-N-distance.table -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/Makefile.am -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/chapi.cpython-313-aarch64-linux-gnu.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/chapi.cpython-313-aarch64-linux-gnu.so" to "" -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/libcootapi.so.1.1 -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/libcootapi.so make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' dh_auto_install --sourcedirectory data cd data && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' Making install in rama-coeffs make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/rama/zo-tables' install --strip-program=true -m 644 all-non-pre-pro.tab coeffsolution.dat '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/rama/zo-tables' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' Making install in cho-models make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-models' install --strip-program=true -m 644 model-level-1-NAG-NAG-ASN-ASN.tab model-level-4-BMA-BETA1-6-BMA.tab model-level-5-MAN-ALPHA1-3-BMA.tab model-level-2-FUC-BETA1-3-NAG.tab model-level-4-BMA-BETA1-6-MAN.tab model-level-5-MAN-ALPHA1-3-MAN.tab model-level-2-FUC-BETA1-6-NAG.tab model-level-4-MAN-ALPHA1-3-BMA.tab model-level-5-MAN-ALPHA1-6-BMA.tab model-level-2-FUL-ALPHA1-3-NAG.tab model-level-4-MAN-ALPHA1-4-BMA.tab model-level-5-MAN-ALPHA1-6-MAN.tab model-level-2-FUL-ALPHA1-6-NAG.tab model-level-4-MAN-ALPHA1-6-BMA.tab model-level-5-NAG-BETA1-2-MAN.tab model-level-2-NAG-BETA1-4-NAG.tab model-level-4-MAN-ALPHA1-6-MAN.tab model-level-6-GAL-BETA1-4-NAG.tab model-level-3-BMA-BETA1-3-NAG.tab model-level-4-NAG-BETA1-4-BMA.tab model-level-6-MAN-ALPHA1-2-MAN.tab model-level-3-BMA-BETA1-4-NAG.tab model-level-5-BMA-BETA1-2-BMA.tab model-level-7-GLC-ALPHA1-3-MAN.tab model-level-3-MAN-ALPHA1-4-NAG.tab model-level-5-BMA-BETA1-6-MAN.tab model-level-4-BMA-BETA1-3-BMA.tab model-level-5-MAN-ALPHA1-2-MAN.tab '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-models' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' Making install in cho-acedrg make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-acedrg' install --strip-program=true -m 644 BMA-acedrg.cif FUC-acedrg.cif MAN-acedrg.cif NAG-acedrg.cif SIA-acedrg.cif XYP-acedrg.cif '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-acedrg' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' Making install in metal make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal' install --strip-program=true -m 644 metal-O-distance.table metal-S-distance.table metal-N-distance.table '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' install --strip-program=true -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz ligands.db syminfo.lib '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' dh_auto_install --sourcedirectory rama-data cd rama-data && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data' install --strip-program=true -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data' install: WARNING: ignoring --strip-program option as -s option was not specified make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' dh_auto_install --sourcedirectory python cd python && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install --strip-program=true -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py coot_fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py coot_ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_generator_3d_import.py gui_hole.py gui_prosmart.py get_recent_pdbe.py jligand.py jligand_gui.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 coot_redefine_functions.py user_define_restraints.py template_key_bindings.py gui_add_linked_cho.py coot_ligand_check.py run_mogul.py coot_contact_score_isolated_ligand.py gui_contact_score_isolated_ligand.py dictionary_generators.py cho_restraints_from_models.py interactive_nudge_residues.py pdbe_validation_data.py pathology_plots.py ligand_validation_sliders.py enhanced_ligand.py gui_ligand_sliders.py coot_sharpen_blur.py coot_acedrg_link.py coot_toolbuttons.py rcrane_loader.py add_linked_cho.py coot_find_baddies.py coot_chemical_feature_clusters.py coot_res_spec_utils.py coot_output_to_window.py populate_python_menus.py coot_hole.py refine.py what_check.py coot_testing_utils.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install: WARNING: ignoring --strip-program option as -s option was not specified Byte-compiling python modules... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py Byte-compiling python modules (optimized versions) ... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' dh_auto_install --sourcedirectory pyrogen cd pyrogen && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' /bin/bash ../libtool --mode=install install --strip-program=true libcoot_py_restraints.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' install --strip-program=true pyrogen '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 pyrogen.py atom_types.py jay_util.py tautomer.py pyrogen_swig.py coot_git.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install: WARNING: ignoring --strip-program option as -s option was not specified Byte-compiling python modules... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py libtool: warning: relinking 'libcoot_py_restraints.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) Byte-compiling python modules (optimized versions) ... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 libtool: install: install --strip-program=true .libs/libcoot_py_restraints.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.so.0.0.0 install: WARNING: ignoring --strip-program option as -s option was not specified libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0 || { rm -f libcoot_py_restraints.so.0 && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so || { rm -f libcoot_py_restraints.so && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so; }; }) libtool: install: install --strip-program=true .libs/libcoot_py_restraints.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.la install: WARNING: ignoring --strip-program option as -s option was not specified libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /bin/bash ../libtool --mode=install install --strip-program=true _pyrogen_swig.la pyrogen_boost.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_pyrogen_swig.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/pyrogen-swig.o .libs/restraints.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-ideal -lcoot-coord-utils -lcoot-lidia-core -lcoot-analysis -lcoot-geometry -lcoot-utils -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,_pyrogen_swig.so.0 -o .libs/_pyrogen_swig.so.0.0.0 libtool: install: install --strip-program=true .libs/_pyrogen_swig.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 install: WARNING: ignoring --strip-program option as -s option was not specified libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0 || { rm -f _pyrogen_swig.so.0 && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so || { rm -f _pyrogen_swig.so && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so; }; }) libtool: install: install --strip-program=true .libs/_pyrogen_swig.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.la install: WARNING: ignoring --strip-program option as -s option was not specified libtool: warning: relinking 'pyrogen_boost.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/restraints-boost.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-pli -lcoot-ideal -lcoot-coord-utils -lcoot-geometry -lcoot-coords -lcoot-lidia-core -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,pyrogen_boost.so.0 -o .libs/pyrogen_boost.so.0.0.0 libtool: install: install --strip-program=true .libs/pyrogen_boost.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 install: WARNING: ignoring --strip-program option as -s option was not specified libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so.0 || { rm -f pyrogen_boost.so.0 && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so || { rm -f pyrogen_boost.so && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so; }; }) libtool: install: install --strip-program=true .libs/pyrogen_boost.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.la install: WARNING: ignoring --strip-program option as -s option was not specified libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' make install-exec-hook make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[4]: Nothing to be done for 'install-exec-hook'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' # Drop the remaining *.la files find debian/tmp -name '*.la' | xargs --no-run-if-empty rm # Adjust the LD_LIBRARY_PATH setting sed -i 's/${exec_prefix}\/libexec\/Coot/LD_LIBRARY_PATH=${prefix}\/lib\/'aarch64-linux-gnu'\/coot ${exec_prefix}\/libexec\/Coot/' \ debian/tmp/usr/bin/coot sed -i 's/LD_LIBRARY_PATH=$COOT_PREFIX\/lib/LD_LIBRARY_PATH=$COOT_PREFIX\/lib\/'aarch64-linux-gnu'\/coot/g' \ debian/tmp/usr/bin/* sed -i 's/LD_LIBRARY_PATH=$prfx\/lib/LD_LIBRARY_PATH=\/usr\/lib\/'aarch64-linux-gnu'\/coot/g' \ debian/tmp/usr/bin/pyrogen # decode image and convert to smaller sizes # TODO: let us reuse pixmaps/coot-icon.png uudecode < debian/coot-button-64x64.png.uu for g in 22x22 24x24 32x32 48x48; do \ convert -geometry $g coot-button-64x64.png coot-button-$g.png;\ done # install the newly generated png's in the hicolor theme for g in 22x22 24x24 32x32 48x48 64x64; do \ install -D coot-button-$g.png debian/tmp/usr/share/icons/hicolor/$g/apps/coot.png;\ done make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_install -i --exclude=scheme make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_install -Ncoot-data -Ncoot-doc debian/rules execute_after_dh_install-arch make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' rm debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootapi.so* make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_installdocs RELEASE-NOTES # debian/citation.bib -- not available (?) make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_installchangelogs dh_installman dh_python3 I: dh_python3 fs:404: removing symlink: debian/coot/usr/lib/python3/dist-packages/_coot.so I: dh_python3 fs:406: renaming debian/coot/usr/lib/python3/dist-packages/_coot.so.0.0.0 to _coot.so I: dh_python3 fs:421: renaming _coot.so to _coot.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:300: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/_coot.so.0 I: dh_python3 fs:404: removing symlink: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.so I: dh_python3 fs:406: renaming debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.so.0.0.0 to _coot_headless_api.so I: dh_python3 fs:421: renaming _coot_headless_api.so to _coot_headless_api.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:300: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.so.0 I: dh_python3 fs:404: removing symlink: debian/coot/usr/lib/python3/dist-packages/_pyrogen_swig.so I: dh_python3 fs:406: renaming debian/coot/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 to _pyrogen_swig.so I: dh_python3 fs:421: renaming _pyrogen_swig.so to _pyrogen_swig.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:300: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/_pyrogen_swig.so.0 I: dh_python3 fs:404: removing symlink: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.so I: dh_python3 fs:406: renaming debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 to pyrogen_boost.so I: dh_python3 fs:421: renaming pyrogen_boost.so to pyrogen_boost.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:300: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.so.0 dh_icons dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_shlibdeps -l/usr/lib/aarch64-linux-gnu/coot dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: symbol _ZN4coot4util16density_at_pointERKN7clipper4XmapIfEERKNS1_10Coord_orthE used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util13calc_atom_mapEPN4mmdb7ManagerEiRKN7clipper4CellERKNS4_10SpacegroupERKNS4_13Grid_samplingE used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util7extentsEPN4mmdb7ManagerEi used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util16sharpen_blur_mapEPN7clipper4XmapIfEEf used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflate used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol cairo_destroy used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-api.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol cairo_get_reference_count used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-api.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.cpython-313-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_GivenExceptionMatches: it's probably a plugin dpkg-shlibdeps: warning: 93 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _ZN4coot4util13int_to_stringB5cxx11Ei used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-pli.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.cpython-313-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 was not linked against libblas.so.3 (it uses none of the library's symbols) make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libcootapi-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'coot-data' in '../coot-data_1.1.09+dfsg-4_all.deb'. dpkg-deb: building package 'libcootapi-dev' in '../libcootapi-dev_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'coot-dbgsym' in '../coot-dbgsym_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'coot' in '../coot_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'libcootapi1.1-dbgsym' in '../libcootapi1.1-dbgsym_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'libcootapi1.1' in '../libcootapi1.1_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'coot-doc' in '../coot-doc_1.1.09+dfsg-4_all.deb'. dpkg-genbuildinfo --build=binary -O../coot_1.1.09+dfsg-4_arm64.buildinfo dpkg-genchanges --build=binary -O../coot_1.1.09+dfsg-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2425547 and its subdirectories I: Current time: Wed Jan 22 07:06:26 -12 2025 I: pbuilder-time-stamp: 1737572787 Wed Jan 22 19:06:27 UTC 2025 I: Signing ./b1/coot_1.1.09+dfsg-4_arm64.buildinfo as coot_1.1.09+dfsg-4_arm64.buildinfo.asc Wed Jan 22 19:06:27 UTC 2025 I: Signed ./b1/coot_1.1.09+dfsg-4_arm64.buildinfo as ./b1/coot_1.1.09+dfsg-4_arm64.buildinfo.asc Wed Jan 22 19:06:27 UTC 2025 - build #1 for coot/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Wed Jan 22 19:06:27 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-GscGn707, removing. /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 19:09 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 18:34 b2 -rw-r--r-- 1 jenkins jenkins 2962 Jan 22 08:27 coot_1.1.09+dfsg-4.dsc -rw------- 1 jenkins jenkins 4083 Jan 22 18:34 rbuildlog.kJ0pfSK /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b1: total 349004 -rw-r--r-- 1 jenkins jenkins 4724171 Jan 22 19:06 build.log -rw-r--r-- 1 jenkins jenkins 11128752 Jan 22 19:06 coot-data_1.1.09+dfsg-4_all.deb -rw-r--r-- 1 jenkins jenkins 243263324 Jan 22 19:08 coot-dbgsym_1.1.09+dfsg-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 2110112 Jan 22 19:08 coot-doc_1.1.09+dfsg-4_all.deb -rw-r--r-- 1 jenkins jenkins 53392 Jan 22 19:08 coot_1.1.09+dfsg-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2962 Jan 22 19:08 coot_1.1.09+dfsg-4.dsc -rw-r--r-- 1 jenkins jenkins 21603 Jan 22 19:08 coot_1.1.09+dfsg-4_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 22485 Jan 22 19:08 coot_1.1.09+dfsg-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 3365 Jan 22 19:08 coot_1.1.09+dfsg-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 7779092 Jan 22 19:08 coot_1.1.09+dfsg-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1497 Jan 22 19:08 coot_1.1.09+dfsg-4_source.changes -rw-r--r-- 1 jenkins jenkins 82160 Jan 22 19:08 libcootapi-dev_1.1.09+dfsg-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 84581036 Jan 22 19:09 libcootapi1.1-dbgsym_1.1.09+dfsg-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 3214496 Jan 22 19:09 libcootapi1.1_1.1.09+dfsg-4_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b2: total 0 Wed Jan 22 19:09:06 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 22 06:34:09 -12 2025 I: pbuilder-time-stamp: 1737570849 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [coot_1.1.09+dfsg-4.dsc] I: copying [./coot_1.1.09+dfsg.orig.tar.xz] I: copying [./coot_1.1.09+dfsg-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./coot_1.1.09+dfsg-4.dsc: unsupported subcommand dpkg-source: info: extracting coot in coot-1.1.09+dfsg dpkg-source: info: unpacking coot_1.1.09+dfsg.orig.tar.xz dpkg-source: info: unpacking coot_1.1.09+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying drop-nonexistent-RDKit-libraries.patch dpkg-source: info: applying system-fonts.patch dpkg-source: info: applying no-RPATH.patch dpkg-source: info: applying 26c08247673834ba561feeb9260c4f1f339ef4b5.patch dpkg-source: info: applying SyntaxWarning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2425547/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='d5fb6b930a154750a0b54ebba3f12a85' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2425547' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/pbuilderrc_GRwE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b1 --logfile b1/build.log coot_1.1.09+dfsg-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2425547/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: bc, cmake, debhelper-compat (= 13), dh-sequence-python3, gemmi, gemmi-dev, ghostscript, imagemagick | graphicsmagick-imagemagick-compat, libasound2-dev, libblas-dev, libboost-dev, libboost-iostreams-dev, libboost-python-dev, libboost-system-dev, libboost-thread-dev, libcairo-dev, libccp4-data, libclipper-dev, libcurl4-gnutls-dev | libcurl-dev, libdw-dev, libeigen3-dev, libelf-dev, libgl-dev, libglib2.0-dev, libglm-dev, libgsl-dev, libgtkmm-4.0-dev, libmmdb2-dev, libpng-dev, libpython3-dev, librdkit-dev, libsqlite3-dev, libssm-dev, libvorbis-dev, nanobind-dev, python-gi-dev, python3-rdkit, python3-requests, python3-setuptools, sharutils, swig, tao-pegtl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on gemmi; however: Package gemmi is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev; however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on imagemagick | graphicsmagick-imagemagick-compat; however: Package imagemagick is not installed. Package graphicsmagick-imagemagick-compat is not installed. pbuilder-satisfydepends-dummy depends on libasound2-dev; however: Package libasound2-dev is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libcairo-dev; however: Package libcairo-dev is not installed. pbuilder-satisfydepends-dummy depends on libccp4-data; however: Package libccp4-data is not installed. pbuilder-satisfydepends-dummy depends on libclipper-dev; however: Package libclipper-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl-dev is not installed. pbuilder-satisfydepends-dummy depends on libdw-dev; however: Package libdw-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libelf-dev; however: Package libelf-dev is not installed. pbuilder-satisfydepends-dummy depends on libgl-dev; however: Package libgl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libglm-dev; however: Package libglm-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtkmm-4.0-dev; however: Package libgtkmm-4.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libpython3-dev; however: Package libpython3-dev is not installed. pbuilder-satisfydepends-dummy depends on librdkit-dev; however: Package librdkit-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libssm-dev; however: Package libssm-dev is not installed. pbuilder-satisfydepends-dummy depends on libvorbis-dev; however: Package libvorbis-dev is not installed. pbuilder-satisfydepends-dummy depends on nanobind-dev; however: Package nanobind-dev is not installed. pbuilder-satisfydepends-dummy depends on python-gi-dev; however: Package python-gi-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-rdkit; however: Package python3-rdkit is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on sharutils; however: Package sharutils is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} ca-certificates{a} cmake{a} cmake-data{a} comerr-dev{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fftw-dev{a} fftw2{a} file{a} fontconfig{a} fontconfig-config{a} fonts-freefont-ttf{a} fonts-urw-base35{a} gemmi{a} gemmi-dev{a} gettext{a} gettext-base{a} ghostscript{a} gir1.2-freedesktop{a} gir1.2-freedesktop-dev{a} gir1.2-gdkpixbuf-2.0{a} gir1.2-girepository-2.0{a} gir1.2-glib-2.0{a} gir1.2-glib-2.0-dev{a} gir1.2-graphene-1.0{a} gir1.2-gtk-4.0{a} gir1.2-harfbuzz-0.0{a} gir1.2-pango-1.0{a} girepository-tools{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} ibverbs-providers{a} icu-devtools{a} imagemagick{a} imagemagick-7-common{a} imagemagick-7.q16{a} intltool-debian{a} krb5-multidev{a} libamd-comgr2{a} libamdhip64-5{a} libapparmor1{a} libarchive-zip-perl{a} libarchive13t64{a} libasound2-data{a} libasound2-dev{a} libasound2t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas-dev{a} libblas3{a} libblkid-dev{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-numpy1.83.0{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcairomm-1.16-1{a} libcairomm-1.16-dev{a} libccp4-data{a} libccp4-dev{a} libccp4c0t64{a} libccp4f0t64{a} libclipper-dev{a} libclipper2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcoordgen3{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdatrie-dev{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libdw-dev{a} libdw1t64{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libegl1-mesa-dev{a} libeigen3-dev{a} libelf-dev{a} libelf1t64{a} libepoxy-dev{a} libepoxy0{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi-dev{a} libffi8{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfontconfig-dev{a} libfontconfig1{a} libfontenc1{a} libfreetype-dev{a} libfreetype6{a} libfribidi-dev{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf-2.0-dev{a} libgdk-pixbuf2.0-bin{a} libgdk-pixbuf2.0-common{a} libgfortran5{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-1.0-1{a} libgirepository-2.0-0{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libglibmm-2.68-1t64{a} libglibmm-2.68-dev{a} libglm-dev{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgraphene-1.0-0{a} libgraphene-1.0-dev{a} libgraphite2-3{a} libgraphite2-dev{a} libgs-common{a} libgs10{a} libgs10-common{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgtk-4-1{a} libgtk-4-common{a} libgtk-4-dev{a} libgtkmm-4.0-0{a} libgtkmm-4.0-dev{a} libharfbuzz-cairo0{a} libharfbuzz-dev{a} libharfbuzz-gobject0{a} libharfbuzz-icu0{a} libharfbuzz-subset0{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-plugins{a} libhwloc15{a} libibmad5{a} libibumad3{a} libibverbs1{a} libice-dev{a} libice6{a} libicu-dev{a} libicu72{a} libidn12{a} libidn2-0{a} libidn2-dev{a} libijs-0.35{a} libinchi1.07{a} libjbig-dev{a} libjbig0{a} libjbig2dec0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-dev{a} libldap2{a} liblerc-dev{a} liblerc4{a} libllvm17t64{a} libllvm19{a} liblqr-1-0{a} libltdl7{a} liblzma-dev{a} liblzo2-2{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libmagickcore-7.q16-10{a} libmagickwand-7.q16-10{a} libmmdb2-0{a} libmmdb2-dev{a} libmount-dev{a} libmunge2{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libogg-dev{a} libogg0{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libopenmpi40{a} libp11-kit-dev{a} libp11-kit0{a} libpam-systemd{a} libpango-1.0-0{a} libpango1.0-dev{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpangomm-2.48-1t64{a} libpangomm-2.48-dev{a} libpangoxft-1.0-0{a} libpaper2{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpkgconf3{a} libpmix2t64{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraw23t64{a} librdkit-dev{a} librdkit1t64{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libselinux1-dev{a} libsensors-config{a} libsensors5{a} libsepol-dev{a} libsharpyuv-dev{a} libsharpyuv0{a} libsigc++-3.0-0{a} libsigc++-3.0-dev{a} libsm-dev{a} libsm6{a} libsqlite3-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssm-dev{a} libssm2{a} libsysprof-capture-4-dev{a} libsystemd-shared{a} libtasn1-6{a} libtasn1-6-dev{a} libthai-data{a} libthai-dev{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtool{a} libuchardet0{a} libucx0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libvorbis-dev{a} libvorbis0a{a} libvorbisenc2{a} libvorbisfile3{a} libvulkan-dev{a} libvulkan1{a} libwayland-bin{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-dev{a} libwayland-egl1{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxcomposite-dev{a} libxcomposite1{a} libxcursor-dev{a} libxcursor1{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxft-dev{a} libxft2{a} libxi-dev{a} libxi6{a} libxinerama-dev{a} libxinerama1{a} libxkbcommon-dev{a} libxkbcommon0{a} libxml2{a} libxnvctrl0{a} libxrandr-dev{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} libxshmfence1{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} nanobind-dev{a} native-architecture{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} openssl{a} pango1.0-tools{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} poppler-data{a} procps{a} python-gi-dev{a} python3{a} python3-autocommand{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-dev{a} python3-gi{a} python3-idna{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-rdkit{a} python3-requests{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} rdkit-data{a} readline-common{a} robin-map-dev{a} sensible-utils{a} sfftw-dev{a} sfftw2{a} shared-mime-info{a} sharutils{a} swig{a} systemd{a} systemd-sysv{a} tao-pegtl-dev{a} tzdata{a} uuid-dev{a} wayland-protocols{a} x11-common{a} x11proto-core-dev{a} x11proto-dev{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf bzip2-doc chrony curl fonts-droid-fallback iso-codes javascript-common krb5-locales libarchive-cpio-perl libgtk-4-bin libgtk-4-media-gstreamer libheif-plugin-aomenc libheif-plugin-x265 libkmod2 libldap-common libltdl-dev libmagickcore-7.q16-10-extra libmail-sendmail-perl libnss-systemd libpaper-utils libpng-tools librsvg2-common libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mesa-vulkan-drivers netpbm ntpsec openntpd psmisc publicsuffix systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 503 newly installed, 0 to remove and 0 not upgraded. Need to get 298 MB of archives. After unpacking 1526 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libsystemd-shared arm64 257.2-2 [1907 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libapparmor1 arm64 3.1.7-1+b3 [41.8 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 systemd arm64 257.2-2 [2922 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 systemd-sysv arm64 257.2-2 [60.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libdbus-1-3 arm64 1.16.0-1 [168 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 dbus-bin arm64 1.16.0-1 [77.7 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 dbus-session-bus-common all 1.16.0-1 [51.1 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 dbus-daemon arm64 1.16.0-1 [150 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 dbus-system-bus-common all 1.16.0-1 [52.2 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 dbus arm64 1.16.0-1 [69.4 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libfftw3-double3 arm64 3.3.10-2+b1 [337 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.45-1 [273 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 fonts-freefont-ttf all 20211204+svn4273-2 [5318 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.2 [216 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 22 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libdav1d7 arm64 1.5.0-1+b1 [248 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libheif-plugin-dav1d arm64 1.19.5-1+b1 [11.5 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libde265-0 arm64 1.0.15-1+b2 [153 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libheif-plugin-libde265 arm64 1.19.5-1+b1 [15.4 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libheif1 arm64 1.19.5-1+b1 [438 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 liblqr-1-0 arm64 0.4.2-2.1+b2 [27.0 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.5.4-2 [415 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libraw23t64 arm64 0.21.3-1+b1 [370 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 imagemagick-7-common all 8:7.1.1.43+dfsg1-1 [67.4 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libmagickcore-7.q16-10 arm64 8:7.1.1.43+dfsg1-1 [1647 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libmagickwand-7.q16-10 arm64 8:7.1.1.43+dfsg1-1 [268 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 poppler-data all 0.4.12-1 [1601 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.1-3 [852 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.1-3 [1990 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-1 [259 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.1-3 [1912 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.1-3 [740 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 68 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.0-2 [1385 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20241223 [164 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libpam-systemd arm64 257.2-2 [272 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [311 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b1 [755 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.12+dfsg-1+b1 [131 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 gtk-update-icon-cache arm64 4.16.12+ds-1 [50.2 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 hicolor-icon-theme all 0.18-1 [12.0 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 adwaita-icon-theme all 47.0-2 [463 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 bc arm64 1.07.1-4+b1 [101 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.4-2 [2267 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 102 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.1-1+b1 [324 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.4-2 [9898 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-1 [55.9 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 dbus-user-session arm64 1.16.0-1 [51.0 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libdconf1 arm64 0.40.0-5 [40.4 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 dconf-service arm64 0.40.0-5 [30.9 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 dconf-gsettings-backend arm64 0.40.0-5 [27.3 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 132 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250108 [113 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10+b1 [126 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10+b1 [54.4 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 libnl-3-200 arm64 3.7.0-0.3+b1 [57.0 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 libnl-route-3-200 arm64 3.7.0-0.3+b1 [167 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 libibverbs1 arm64 55.0-1 [58.6 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 ibverbs-providers arm64 55.0-1 [328 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 librdmacm1t64 arm64 55.0-1 [67.0 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 libfabric1 arm64 1.17.0-3.1 [480 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 libhwloc15 arm64 2.11.2-1 [141 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 libmunge2 arm64 0.5.15-4+b1 [19.4 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 libpciaccess0 arm64 0.17-3+b3 [51.2 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 libxnvctrl0 arm64 535.171.04-1+b1 [14.1 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 ocl-icd-libopencl1 arm64 2.3.2-1+b2 [39.3 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 libhwloc-plugins arm64 2.11.2-1 [17.9 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 libpmix2t64 arm64 5.0.6-1 [577 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 libllvm17t64 arm64 1:17.0.6-20+b1 [21.3 MB] Get: 168 http://deb.debian.org/debian unstable/main arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3+b2 [12.1 MB] Get: 169 http://deb.debian.org/debian unstable/main arm64 libdrm-common all 2.4.123-1 [8084 B] Get: 170 http://deb.debian.org/debian unstable/main arm64 libdrm2 arm64 2.4.123-1 [38.0 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [21.6 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 libnuma1 arm64 2.0.18-1+b1 [21.8 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 libhsakmt1 arm64 6.1.2+ds-1 [56.9 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 libhsa-runtime64-1 arm64 6.1.2-2 [300 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 libamdhip64-5 arm64 5.7.1-5 [8823 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 libibumad3 arm64 55.0-1 [27.2 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 libibmad5 arm64 55.0-1 [41.3 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 libucx0 arm64 1.17.0+ds-3 [959 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 libopenmpi40 arm64 5.0.6-3 [2087 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 fftw2 arm64 2.1.5-7+b1 [203 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 fftw-dev arm64 2.1.5-7+b1 [242 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.15.0-2 [462 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 gemmi arm64 0.6.5+ds-2+b2 [1123 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Get: 185 http://deb.debian.org/debian unstable/main arm64 gemmi-dev arm64 0.6.5+ds-2+b2 [1087 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 libgs-common all 10.04.0~dfsg-2 [148 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 libgs10-common all 10.04.0~dfsg-2 [475 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 libavahi-common-data arm64 0.8-16 [112 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 libavahi-common3 arm64 0.8-16 [43.3 kB] Get: 190 http://deb.debian.org/debian unstable/main arm64 libavahi-client3 arm64 0.8-16 [46.7 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 libcups2t64 arm64 2.4.10-2+b1 [236 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 libidn12 arm64 1.42-2+b1 [80.2 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 libijs-0.35 arm64 0.35-15.1+b2 [14.9 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 libjbig2dec0 arm64 0.20-1+b3 [60.1 kB] Get: 195 http://deb.debian.org/debian unstable/main arm64 libpaper2 arm64 2.2.5-0.3 [16.3 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 libgs10 arm64 10.04.0~dfsg-2+b1 [2351 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 ghostscript arm64 10.04.0~dfsg-2+b1 [51.0 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 gir1.2-glib-2.0 arm64 2.82.4-2 [194 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b3 [27.2 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 libcairo-gobject2 arm64 1.18.2-2 [130 kB] Get: 208 http://deb.debian.org/debian unstable/main arm64 gir1.2-freedesktop arm64 1.82.0-4 [60.2 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 gir1.2-glib-2.0-dev arm64 2.82.4-2 [903 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 gir1.2-freedesktop-dev arm64 1.82.0-4 [51.3 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 gir1.2-gdkpixbuf-2.0 arm64 2.42.12+dfsg-1+b1 [14.3 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 libgirepository-1.0-1 arm64 1.82.0-4 [108 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 gir1.2-girepository-2.0 arm64 1.82.0-4 [39.4 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 libgraphene-1.0-0 arm64 1.10.8-5 [42.1 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 gir1.2-graphene-1.0 arm64 1.10.8-5 [12.8 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-gobject0 arm64 10.2.0-1 [31.9 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 gir1.2-harfbuzz-0.0 arm64 10.2.0-1 [42.0 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 222 http://deb.debian.org/debian unstable/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 libpango-1.0-0 arm64 1.56.1-1 [213 kB] Get: 225 http://deb.debian.org/debian unstable/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [52.8 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [33.8 kB] Get: 227 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b3 [51.6 kB] Get: 228 http://deb.debian.org/debian unstable/main arm64 libpangoxft-1.0-0 arm64 1.56.1-1 [27.0 kB] Get: 229 http://deb.debian.org/debian unstable/main arm64 gir1.2-pango-1.0 arm64 1.56.1-1 [39.0 kB] Get: 230 http://deb.debian.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3+b1 [49.6 kB] Get: 231 http://deb.debian.org/debian unstable/main arm64 libcairo-script-interpreter2 arm64 1.18.2-2 [57.4 kB] Get: 232 http://deb.debian.org/debian unstable/main arm64 libcloudproviders0 arm64 0.3.6-1+b1 [27.7 kB] Get: 233 http://deb.debian.org/debian unstable/main arm64 libcolord2 arm64 1.4.7-1+b2 [130 kB] Get: 234 http://deb.debian.org/debian unstable/main arm64 libepoxy0 arm64 1.5.10-2 [200 kB] Get: 235 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-subset0 arm64 10.2.0-1 [511 kB] Get: 236 http://deb.debian.org/debian unstable/main arm64 libvulkan1 arm64 1.4.304.0-1 [126 kB] Get: 237 http://deb.debian.org/debian unstable/main arm64 libwayland-client0 arm64 1.23.0-1+b1 [26.0 kB] Get: 238 http://deb.debian.org/debian unstable/main arm64 libwayland-egl1 arm64 1.23.0-1+b1 [5768 B] Get: 239 http://deb.debian.org/debian unstable/main arm64 libxfixes3 arm64 1:6.0.0-2+b3 [20.4 kB] Get: 240 http://deb.debian.org/debian unstable/main arm64 libxcursor1 arm64 1:1.2.3-1 [39.3 kB] Get: 241 http://deb.debian.org/debian unstable/main arm64 libxdamage1 arm64 1:1.1.6-1+b2 [15.6 kB] Get: 242 http://deb.debian.org/debian unstable/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB] Get: 243 http://deb.debian.org/debian unstable/main arm64 libxinerama1 arm64 2:1.1.4-3+b3 [16.1 kB] Get: 244 http://deb.debian.org/debian unstable/main arm64 xkb-data all 2.42-1 [790 kB] Get: 245 http://deb.debian.org/debian unstable/main arm64 libxkbcommon0 arm64 1.7.0-2 [106 kB] Get: 246 http://deb.debian.org/debian unstable/main arm64 libxrandr2 arm64 2:1.5.4-1+b2 [36.0 kB] Get: 247 http://deb.debian.org/debian unstable/main arm64 libglvnd0 arm64 1.7.0-1+b2 [41.6 kB] Get: 248 http://deb.debian.org/debian unstable/main arm64 libgles2 arm64 1.7.0-1+b2 [18.0 kB] Get: 249 http://deb.debian.org/debian unstable/main arm64 libgtk-4-common all 4.16.12+ds-1 [2759 kB] Get: 250 http://deb.debian.org/debian unstable/main arm64 libgtk-4-1 arm64 4.16.12+ds-1 [2938 kB] Get: 251 http://deb.debian.org/debian unstable/main arm64 gir1.2-gtk-4.0 arm64 4.16.12+ds-1 [210 kB] Get: 252 http://deb.debian.org/debian unstable/main arm64 native-architecture all 0.2.3 [2108 B] Get: 253 http://deb.debian.org/debian unstable/main arm64 libgirepository-2.0-0 arm64 2.82.4-2 [130 kB] Get: 254 http://deb.debian.org/debian unstable/main arm64 girepository-tools arm64 2.82.4-2 [135 kB] Get: 255 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 72.1-6 [196 kB] Get: 256 http://deb.debian.org/debian unstable/main arm64 imagemagick-7.q16 arm64 8:7.1.1.43+dfsg1-1 [726 kB] Get: 257 http://deb.debian.org/debian unstable/main arm64 imagemagick arm64 8:7.1.1.43+dfsg1-1 [20.0 kB] Get: 258 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-4 [56.9 kB] Get: 259 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4 [41.0 kB] Get: 260 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-4 [41.0 kB] Get: 261 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-4 [53.1 kB] Get: 262 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-4 [126 kB] Get: 263 http://deb.debian.org/debian unstable/main arm64 libasound2-data all 1.2.13-1 [21.1 kB] Get: 264 http://deb.debian.org/debian unstable/main arm64 libasound2t64 arm64 1.2.13-1+b1 [338 kB] Get: 265 http://deb.debian.org/debian unstable/main arm64 libasound2-dev arm64 1.2.13-1+b1 [120 kB] Get: 266 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 267 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.0-4 [106 kB] Get: 268 http://deb.debian.org/debian unstable/main arm64 uuid-dev arm64 2.40.4-1 [48.2 kB] Get: 269 http://deb.debian.org/debian unstable/main arm64 libblkid-dev arm64 2.40.4-1 [210 kB] Get: 270 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-4 [10.6 MB] Get: 271 http://deb.debian.org/debian unstable/main arm64 libboost-atomic1.83.0 arm64 1.83.0-4 [233 kB] Get: 272 http://deb.debian.org/debian unstable/main arm64 libboost-atomic1.83-dev arm64 1.83.0-4 [234 kB] Get: 273 http://deb.debian.org/debian unstable/main arm64 libboost-chrono1.83.0t64 arm64 1.83.0-4 [239 kB] Get: 274 http://deb.debian.org/debian unstable/main arm64 libboost-chrono1.83-dev arm64 1.83.0-4 [245 kB] Get: 275 http://deb.debian.org/debian unstable/main arm64 libboost-date-time1.83.0 arm64 1.83.0-4 [231 kB] Get: 276 http://deb.debian.org/debian unstable/main arm64 libboost-serialization1.83.0 arm64 1.83.0-4 [325 kB] Get: 277 http://deb.debian.org/debian unstable/main arm64 libboost-serialization1.83-dev arm64 1.83.0-4 [375 kB] Get: 278 http://deb.debian.org/debian unstable/main arm64 libboost-date-time1.83-dev arm64 1.83.0-4 [239 kB] Get: 279 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 280 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83.0 arm64 1.83.0-4 [314 kB] Get: 281 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 72.1-6 [10.3 MB] Get: 282 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83-dev arm64 1.83.0-4 [338 kB] Get: 283 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-4 [261 kB] Get: 284 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 285 http://deb.debian.org/debian unstable/main arm64 libboost-python1.83.0 arm64 1.83.0-4 [309 kB] Get: 286 http://deb.debian.org/debian unstable/main arm64 libboost-numpy1.83.0 arm64 1.83.0-4 [241 kB] Get: 287 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.1-3 [1971 kB] Get: 288 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 289 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 290 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.1-3 [4710 kB] Get: 291 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.13.1-2 [10.2 kB] Get: 292 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.1-3 [504 kB] Get: 293 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 294 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 295 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 296 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.13.1-2 [26.1 kB] Get: 297 http://deb.debian.org/debian unstable/main arm64 libboost-python1.83-dev arm64 1.83.0-4 [323 kB] Get: 298 http://deb.debian.org/debian unstable/main arm64 libboost-python-dev arm64 1.83.0.2+b2 [3880 B] Get: 299 http://deb.debian.org/debian unstable/main arm64 libboost-system1.83.0 arm64 1.83.0-4 [231 kB] Get: 300 http://deb.debian.org/debian unstable/main arm64 libboost-system1.83-dev arm64 1.83.0-4 [231 kB] Get: 301 http://deb.debian.org/debian unstable/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B] Get: 302 http://deb.debian.org/debian unstable/main arm64 libboost-thread1.83.0 arm64 1.83.0-4 [265 kB] Get: 303 http://deb.debian.org/debian unstable/main arm64 libboost-thread1.83-dev arm64 1.83.0-4 [277 kB] Get: 304 http://deb.debian.org/debian unstable/main arm64 libboost-thread-dev arm64 1.83.0.2+b2 [3616 B] Get: 305 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 306 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 307 http://deb.debian.org/debian unstable/main arm64 libpng-dev arm64 1.6.45-1 [361 kB] Get: 308 http://deb.debian.org/debian unstable/main arm64 libfreetype-dev arm64 2.13.3+dfsg-1 [600 kB] Get: 309 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 310 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 311 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 312 http://deb.debian.org/debian unstable/main arm64 libfontconfig-dev arm64 2.15.0-2 [412 kB] Get: 313 http://deb.debian.org/debian unstable/main arm64 libffi-dev arm64 3.4.6-1 [57.0 kB] Get: 314 http://deb.debian.org/debian unstable/main arm64 libsepol-dev arm64 3.7-1 [354 kB] Get: 315 http://deb.debian.org/debian unstable/main arm64 libpcre2-16-0 arm64 10.44-5 [230 kB] Get: 316 http://deb.debian.org/debian unstable/main arm64 libpcre2-32-0 arm64 10.44-5 [220 kB] Get: 317 http://deb.debian.org/debian unstable/main arm64 libpcre2-posix3 arm64 10.44-5 [60.5 kB] Get: 318 http://deb.debian.org/debian unstable/main arm64 libpcre2-dev arm64 10.44-5 [704 kB] Get: 319 http://deb.debian.org/debian unstable/main arm64 libselinux1-dev arm64 3.7-3+b1 [164 kB] Get: 320 http://deb.debian.org/debian unstable/main arm64 libmount-dev arm64 2.40.4-1 [29.3 kB] Get: 321 http://deb.debian.org/debian unstable/main arm64 libsysprof-capture-4-dev arm64 47.2-1 [49.1 kB] Get: 322 http://deb.debian.org/debian unstable/main arm64 libgio-2.0-dev arm64 2.82.4-2 [1698 kB] Get: 323 http://deb.debian.org/debian unstable/main arm64 libglib2.0-data all 2.82.4-2 [1276 kB] Get: 324 http://deb.debian.org/debian unstable/main arm64 libglib2.0-bin arm64 2.82.4-2 [123 kB] Get: 325 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 326 http://deb.debian.org/debian unstable/main arm64 libgio-2.0-dev-bin arm64 2.82.4-2 [162 kB] Get: 327 http://deb.debian.org/debian unstable/main arm64 libglib2.0-dev-bin arm64 2.82.4-2 [52.1 kB] Get: 328 http://deb.debian.org/debian unstable/main arm64 libglib2.0-dev arm64 2.82.4-2 [52.9 kB] Get: 329 http://deb.debian.org/debian unstable/main arm64 libpixman-1-dev arm64 0.44.0-3 [11.4 kB] Get: 330 http://deb.debian.org/debian unstable/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 331 http://deb.debian.org/debian unstable/main arm64 x11proto-dev all 2024.1-1 [603 kB] Get: 332 http://deb.debian.org/debian unstable/main arm64 x11proto-core-dev all 2024.1-1 [3312 B] Get: 333 http://deb.debian.org/debian unstable/main arm64 libice-dev arm64 2:1.1.1-1 [73.0 kB] Get: 334 http://deb.debian.org/debian unstable/main arm64 libsm-dev arm64 2:1.2.4-1 [38.0 kB] Get: 335 http://deb.debian.org/debian unstable/main arm64 libxau-dev arm64 1:1.0.11-1 [23.9 kB] Get: 336 http://deb.debian.org/debian unstable/main arm64 libxdmcp-dev arm64 1:1.1.5-1 [44.2 kB] Get: 337 http://deb.debian.org/debian unstable/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 338 http://deb.debian.org/debian unstable/main arm64 libxcb1-dev arm64 1.17.0-2+b1 [182 kB] Get: 339 http://deb.debian.org/debian unstable/main arm64 libx11-dev arm64 2:1.8.10-2 [877 kB] Get: 340 http://deb.debian.org/debian unstable/main arm64 libxcb-render0-dev arm64 1.17.0-2+b1 [119 kB] Get: 341 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0-dev arm64 1.17.0-2+b1 [108 kB] Get: 342 http://deb.debian.org/debian unstable/main arm64 libxext-dev arm64 2:1.3.4-1+b3 [105 kB] Get: 343 http://deb.debian.org/debian unstable/main arm64 libxrender-dev arm64 1:0.9.10-1.1+b3 [35.7 kB] Get: 344 http://deb.debian.org/debian unstable/main arm64 libcairo2-dev arm64 1.18.2-2 [43.0 kB] Get: 345 http://deb.debian.org/debian unstable/main arm64 libsigc++-3.0-0 arm64 3.6.0-2+b1 [29.2 kB] Get: 346 http://deb.debian.org/debian unstable/main arm64 libcairomm-1.16-1 arm64 1.18.0-1+b2 [57.6 kB] Get: 347 http://deb.debian.org/debian unstable/main arm64 libsigc++-3.0-dev arm64 3.6.0-2+b1 [51.5 kB] Get: 348 http://deb.debian.org/debian unstable/main arm64 libcairomm-1.16-dev arm64 1.18.0-1+b2 [64.4 kB] Get: 349 http://deb.debian.org/debian unstable/main arm64 libccp4-data all 8.0.0-4 [62.7 kB] Get: 350 http://deb.debian.org/debian unstable/main arm64 libccp4c0t64 arm64 8.0.0-4 [83.1 kB] Get: 351 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-14 [361 kB] Get: 352 http://deb.debian.org/debian unstable/main arm64 libmmdb2-0 arm64 2.0.22-1+b2 [309 kB] Get: 353 http://deb.debian.org/debian unstable/main arm64 libccp4f0t64 arm64 8.0.0-4 [175 kB] Get: 354 http://deb.debian.org/debian unstable/main arm64 libccp4-dev arm64 8.0.0-4 [42.9 kB] Get: 355 http://deb.debian.org/debian unstable/main arm64 sfftw2 arm64 2.1.5-7+b1 [203 kB] Get: 356 http://deb.debian.org/debian unstable/main arm64 libclipper2 arm64 2.1.20201109-2+b3 [1102 kB] Get: 357 http://deb.debian.org/debian unstable/main arm64 libmmdb2-dev arm64 2.0.22-1+b2 [92.9 kB] Get: 358 http://deb.debian.org/debian unstable/main arm64 sfftw-dev arm64 2.1.5-7+b1 [244 kB] Get: 359 http://deb.debian.org/debian unstable/main arm64 libclipper-dev arm64 2.1.20201109-2+b3 [82.4 kB] Get: 360 http://deb.debian.org/debian unstable/main arm64 libcoordgen3 arm64 3.0.2-1+b2 [204 kB] Get: 361 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 362 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 363 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 364 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.11.1-1+b1 [331 kB] Get: 365 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 366 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB] Get: 367 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 368 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 369 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 370 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 371 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 372 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 373 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 374 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 375 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 376 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-4 [15.9 kB] Get: 377 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.9+dfsg-1 [305 kB] Get: 378 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 379 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.6.0-2 [86.5 kB] Get: 380 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.9.1-1 [23.0 kB] Get: 381 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.9.1-1 [162 kB] Get: 382 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 383 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 384 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.4.0-2 [3234 kB] Get: 385 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 386 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [329 kB] Get: 387 http://deb.debian.org/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.11.1-1+b1 [461 kB] Get: 388 http://deb.debian.org/debian unstable/main arm64 libdatrie-dev arm64 0.2.13-3+b1 [18.5 kB] Get: 389 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-1+b1 [51.4 kB] Get: 390 http://deb.debian.org/debian unstable/main arm64 libdrm-radeon1 arm64 2.4.123-1 [21.3 kB] Get: 391 http://deb.debian.org/debian unstable/main arm64 libelf-dev arm64 0.192-4 [94.9 kB] Get: 392 http://deb.debian.org/debian unstable/main arm64 libdw1t64 arm64 0.192-4 [237 kB] Get: 393 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 394 http://deb.debian.org/debian unstable/main arm64 libdw-dev arm64 0.192-4 [320 kB] Get: 395 http://deb.debian.org/debian unstable/main arm64 libwayland-server0 arm64 1.23.0-1+b1 [33.4 kB] Get: 396 http://deb.debian.org/debian unstable/main arm64 libglapi-mesa arm64 24.3.3-1 [47.9 kB] Get: 397 http://deb.debian.org/debian unstable/main arm64 libllvm19 arm64 1:19.1.7-1 [23.3 MB] Get: 398 http://deb.debian.org/debian unstable/main arm64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 399 http://deb.debian.org/debian unstable/main arm64 libsensors5 arm64 1:3.6.0-10+b1 [34.3 kB] Get: 400 http://deb.debian.org/debian unstable/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [241 kB] Get: 401 http://deb.debian.org/debian unstable/main arm64 libxcb-dri3-0 arm64 1.17.0-2+b1 [107 kB] Get: 402 http://deb.debian.org/debian unstable/main arm64 libxcb-present0 arm64 1.17.0-2+b1 [106 kB] Get: 403 http://deb.debian.org/debian unstable/main arm64 libxcb-randr0 arm64 1.17.0-2+b1 [117 kB] Get: 404 http://deb.debian.org/debian unstable/main arm64 libxcb-sync1 arm64 1.17.0-2+b1 [109 kB] Get: 405 http://deb.debian.org/debian unstable/main arm64 libxcb-xfixes0 arm64 1.17.0-2+b1 [110 kB] Get: 406 http://deb.debian.org/debian unstable/main arm64 libxshmfence1 arm64 1.3-1+b3 [9104 B] Get: 407 http://deb.debian.org/debian unstable/main arm64 mesa-libgallium arm64 24.3.3-1 [7904 kB] Get: 408 http://deb.debian.org/debian unstable/main arm64 libgbm1 arm64 24.3.3-1 [42.9 kB] Get: 409 http://deb.debian.org/debian unstable/main arm64 libegl-mesa0 arm64 24.3.3-1 [119 kB] Get: 410 http://deb.debian.org/debian unstable/main arm64 libegl1 arm64 1.7.0-1+b2 [34.0 kB] Get: 411 http://deb.debian.org/debian unstable/main arm64 libxcb-glx0 arm64 1.17.0-2+b1 [123 kB] Get: 412 http://deb.debian.org/debian unstable/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b4 [19.2 kB] Get: 413 http://deb.debian.org/debian unstable/main arm64 libgl1-mesa-dri arm64 24.3.3-1 [44.6 kB] Get: 414 http://deb.debian.org/debian unstable/main arm64 libglx-mesa0 arm64 24.3.3-1 [142 kB] Get: 415 http://deb.debian.org/debian unstable/main arm64 libglx0 arm64 1.7.0-1+b2 [31.1 kB] Get: 416 http://deb.debian.org/debian unstable/main arm64 libgl1 arm64 1.7.0-1+b2 [90.9 kB] Get: 417 http://deb.debian.org/debian unstable/main arm64 libglx-dev arm64 1.7.0-1+b2 [15.8 kB] Get: 418 http://deb.debian.org/debian unstable/main arm64 libgl-dev arm64 1.7.0-1+b2 [101 kB] Get: 419 http://deb.debian.org/debian unstable/main arm64 libegl-dev arm64 1.7.0-1+b2 [19.5 kB] Get: 420 http://deb.debian.org/debian unstable/main arm64 libglvnd-core-dev arm64 1.7.0-1+b2 [13.4 kB] Get: 421 http://deb.debian.org/debian unstable/main arm64 libgles1 arm64 1.7.0-1+b2 [12.6 kB] Get: 422 http://deb.debian.org/debian unstable/main arm64 libgles-dev arm64 1.7.0-1+b2 [50.8 kB] Get: 423 http://deb.debian.org/debian unstable/main arm64 libopengl0 arm64 1.7.0-1+b2 [32.1 kB] Get: 424 http://deb.debian.org/debian unstable/main arm64 libopengl-dev arm64 1.7.0-1+b2 [5376 B] Get: 425 http://deb.debian.org/debian unstable/main arm64 libglvnd-dev arm64 1.7.0-1+b2 [5144 B] Get: 426 http://deb.debian.org/debian unstable/main arm64 libegl1-mesa-dev arm64 24.3.3-1 [22.8 kB] Get: 427 http://deb.debian.org/debian unstable/main arm64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 428 http://deb.debian.org/debian unstable/main arm64 libepoxy-dev arm64 1.5.10-2 [127 kB] Get: 429 http://deb.debian.org/debian unstable/main arm64 libfribidi-dev arm64 1.0.16-1 [65.9 kB] Get: 430 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf2.0-bin arm64 2.42.12+dfsg-1+b1 [19.0 kB] Get: 431 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 432 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 433 http://deb.debian.org/debian unstable/main arm64 libjbig-dev arm64 2.1-6.1+b2 [30.5 kB] Get: 434 http://deb.debian.org/debian unstable/main arm64 libwebpdecoder3 arm64 1.5.0-0.1 [182 kB] Get: 435 http://deb.debian.org/debian unstable/main arm64 libsharpyuv-dev arm64 1.5.0-0.1 [118 kB] Get: 436 http://deb.debian.org/debian unstable/main arm64 libwebp-dev arm64 1.5.0-0.1 [406 kB] Get: 437 http://deb.debian.org/debian unstable/main arm64 libtiffxx6 arm64 4.5.1+git230720-5 [149 kB] Get: 438 http://deb.debian.org/debian unstable/main arm64 liblerc-dev arm64 4.0.0+ds-5 [164 kB] Get: 439 http://deb.debian.org/debian unstable/main arm64 libtiff-dev arm64 4.5.1+git230720-5 [451 kB] Get: 440 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf-2.0-dev arm64 2.42.12+dfsg-1+b1 [52.7 kB] Get: 441 http://deb.debian.org/debian unstable/main arm64 libglibmm-2.68-1t64 arm64 2.82.0-1 [604 kB] Get: 442 http://deb.debian.org/debian unstable/main arm64 libglibmm-2.68-dev arm64 2.82.0-1 [465 kB] Get: 443 http://deb.debian.org/debian unstable/main arm64 libglm-dev all 0.9.9.8+ds-8 [183 kB] Get: 444 http://deb.debian.org/debian unstable/main arm64 libgraphene-1.0-dev arm64 1.10.8-5 [61.5 kB] Get: 445 http://deb.debian.org/debian unstable/main arm64 libgraphite2-dev arm64 1.3.14-2+b1 [20.3 kB] Get: 446 http://deb.debian.org/debian unstable/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB] Get: 447 http://deb.debian.org/debian unstable/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB] Get: 448 http://deb.debian.org/debian unstable/main arm64 libgsl-dev arm64 2.8+dfsg-5 [1118 kB] Get: 449 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-icu0 arm64 10.2.0-1 [15.5 kB] Get: 450 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-cairo0 arm64 10.2.0-1 [42.4 kB] Get: 451 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-dev arm64 10.2.0-1 [145 kB] Get: 452 http://deb.debian.org/debian unstable/main arm64 libthai-dev arm64 0.1.29-2+b1 [24.0 kB] Get: 453 http://deb.debian.org/debian unstable/main arm64 libxft-dev arm64 2.3.6-1+b3 [72.0 kB] Get: 454 http://deb.debian.org/debian unstable/main arm64 pango1.0-tools arm64 1.56.1-1 [43.0 kB] Get: 455 http://deb.debian.org/debian unstable/main arm64 libpango1.0-dev arm64 1.56.1-1 [155 kB] Get: 456 http://deb.debian.org/debian unstable/main arm64 libwayland-cursor0 arm64 1.23.0-1+b1 [11.5 kB] Get: 457 http://deb.debian.org/debian unstable/main arm64 libwayland-bin arm64 1.23.0-1+b1 [20.5 kB] Get: 458 http://deb.debian.org/debian unstable/main arm64 libwayland-dev arm64 1.23.0-1+b1 [73.6 kB] Get: 459 http://deb.debian.org/debian unstable/main arm64 libxcomposite1 arm64 1:0.4.6-1 [16.4 kB] Get: 460 http://deb.debian.org/debian unstable/main arm64 libxfixes-dev arm64 1:6.0.0-2+b3 [22.9 kB] Get: 461 http://deb.debian.org/debian unstable/main arm64 libxcomposite-dev arm64 1:0.4.6-1 [20.2 kB] Get: 462 http://deb.debian.org/debian unstable/main arm64 libxcursor-dev arm64 1:1.2.3-1 [51.9 kB] Get: 463 http://deb.debian.org/debian unstable/main arm64 libxdamage-dev arm64 1:1.1.6-1+b2 [15.5 kB] Get: 464 http://deb.debian.org/debian unstable/main arm64 libxi-dev arm64 2:1.8.2-1 [240 kB] Get: 465 http://deb.debian.org/debian unstable/main arm64 libxinerama-dev arm64 2:1.1.4-3+b3 [18.4 kB] Get: 466 http://deb.debian.org/debian unstable/main arm64 libxkbcommon-dev arm64 1.7.0-2 [53.6 kB] Get: 467 http://deb.debian.org/debian unstable/main arm64 libxrandr-dev arm64 2:1.5.4-1+b2 [44.4 kB] Get: 468 http://deb.debian.org/debian unstable/main arm64 libvulkan-dev arm64 1.4.304.0-1 [1452 kB] Get: 469 http://deb.debian.org/debian unstable/main arm64 wayland-protocols all 1.39-1 [107 kB] Get: 470 http://deb.debian.org/debian unstable/main arm64 libgtk-4-dev arm64 4.16.12+ds-1 [986 kB] Get: 471 http://deb.debian.org/debian unstable/main arm64 libpangomm-2.48-1t64 arm64 2.56.1-1 [81.0 kB] Get: 472 http://deb.debian.org/debian unstable/main arm64 libgtkmm-4.0-0 arm64 4.16.0-1 [965 kB] Get: 473 http://deb.debian.org/debian unstable/main arm64 libpangomm-2.48-dev arm64 2.56.1-1 [73.2 kB] Get: 474 http://deb.debian.org/debian unstable/main arm64 libgtkmm-4.0-dev arm64 4.16.0-1 [547 kB] Get: 475 http://deb.debian.org/debian unstable/main arm64 libinchi1.07 arm64 1.07.2+dfsg-1 [500 kB] Get: 476 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 477 http://deb.debian.org/debian unstable/main arm64 libmaeparser1 arm64 1.3.1-1+b2 [84.6 kB] Get: 478 http://deb.debian.org/debian unstable/main arm64 libogg0 arm64 1.3.5-3+b2 [23.6 kB] Get: 479 http://deb.debian.org/debian unstable/main arm64 libogg-dev arm64 1.3.5-3+b2 [200 kB] Get: 480 http://deb.debian.org/debian unstable/main arm64 librdkit1t64 arm64 202409.4-1 [4811 kB] Get: 481 http://deb.debian.org/debian unstable/main arm64 librdkit-dev arm64 202409.4-1 [471 kB] Get: 482 http://deb.debian.org/debian unstable/main arm64 libsqlite3-dev arm64 3.46.1-1 [1058 kB] Get: 483 http://deb.debian.org/debian unstable/main arm64 libssm2 arm64 1.4.0-2+b3 [75.3 kB] Get: 484 http://deb.debian.org/debian unstable/main arm64 libssm-dev arm64 1.4.0-2+b3 [15.2 kB] Get: 485 http://deb.debian.org/debian unstable/main arm64 libvorbis0a arm64 1.3.7-2+b1 [84.5 kB] Get: 486 http://deb.debian.org/debian unstable/main arm64 libvorbisenc2 arm64 1.3.7-2+b1 [76.3 kB] Get: 487 http://deb.debian.org/debian unstable/main arm64 libvorbisfile3 arm64 1.3.7-2+b1 [20.8 kB] Get: 488 http://deb.debian.org/debian unstable/main arm64 libvorbis-dev arm64 1.3.7-2+b1 [320 kB] Get: 489 http://deb.debian.org/debian unstable/main arm64 robin-map-dev all 1.3.0-1 [29.8 kB] Get: 490 http://deb.debian.org/debian unstable/main arm64 nanobind-dev all 2.4.0-1 [161 kB] Get: 491 http://deb.debian.org/debian unstable/main arm64 python3-gi arm64 3.50.0-4 [257 kB] Get: 492 http://deb.debian.org/debian unstable/main arm64 python-gi-dev arm64 3.50.0-4 [13.5 kB] Get: 493 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.12.14+ds-1 [9624 B] Get: 494 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 495 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1+b1 [129 kB] Get: 496 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 497 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-13 [3815 kB] Get: 498 http://deb.debian.org/debian unstable/main arm64 rdkit-data all 202409.4-1 [13.2 MB] Get: 499 http://deb.debian.org/debian unstable/main arm64 python3-rdkit arm64 202409.4-1 [4314 kB] Get: 500 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 501 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 502 http://deb.debian.org/debian unstable/main arm64 sharutils arm64 1:4.15.2-10 [260 kB] Get: 503 http://deb.debian.org/debian unstable/main arm64 swig arm64 4.3.0-0.1 [1406 kB] Fetched 298 MB in 3s (96.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libsystemd-shared_257.2-2_arm64.deb ... Unpacking libsystemd-shared:arm64 (257.2-2) ... Selecting previously unselected package libapparmor1:arm64. Preparing to unpack .../libapparmor1_3.1.7-1+b3_arm64.deb ... Unpacking libapparmor1:arm64 (3.1.7-1+b3) ... Setting up libsystemd-shared:arm64 (257.2-2) ... Selecting previously unselected package systemd. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19978 files and directories currently installed.) Preparing to unpack .../systemd_257.2-2_arm64.deb ... Unpacking systemd (257.2-2) ... Setting up libapparmor1:arm64 (3.1.7-1+b3) ... Setting up systemd (257.2-2) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' -> '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' -> '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' -> '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20921 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_257.2-2_arm64.deb ... Unpacking systemd-sysv (257.2-2) ... Selecting previously unselected package libdbus-1-3:arm64. Preparing to unpack .../01-libdbus-1-3_1.16.0-1_arm64.deb ... Unpacking libdbus-1-3:arm64 (1.16.0-1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../02-dbus-bin_1.16.0-1_arm64.deb ... Unpacking dbus-bin (1.16.0-1) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../03-dbus-session-bus-common_1.16.0-1_all.deb ... Unpacking dbus-session-bus-common (1.16.0-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../04-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../05-dbus-daemon_1.16.0-1_arm64.deb ... Unpacking dbus-daemon (1.16.0-1) ... Selecting previously unselected package dbus-system-bus-common. Preparing to unpack .../06-dbus-system-bus-common_1.16.0-1_all.deb ... Unpacking dbus-system-bus-common (1.16.0-1) ... Selecting previously unselected package dbus. Preparing to unpack .../07-dbus_1.16.0-1_arm64.deb ... Unpacking dbus (1.16.0-1) ... Selecting previously unselected package libfftw3-double3:arm64. Preparing to unpack .../08-libfftw3-double3_3.3.10-2+b1_arm64.deb ... Unpacking libfftw3-double3:arm64 (3.3.10-2+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../09-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../10-libpng16-16t64_1.6.45-1_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.45-1) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../11-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-freefont-ttf. Preparing to unpack .../12-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... Selecting previously unselected package libfontenc1:arm64. Preparing to unpack .../13-libfontenc1_1%3a1.1.8-1+b2_arm64.deb ... Unpacking libfontenc1:arm64 (1:1.1.8-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../14-x11-common_1%3a7.7+23.2_all.deb ... Unpacking x11-common (1:7.7+23.2) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../15-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../16-xfonts-utils_1%3a7.7+7_arm64.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../17-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../18-fontconfig-config_2.15.0-2_arm64.deb ... Unpacking fontconfig-config (2.15.0-2) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../19-libfontconfig1_2.15.0-2_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-2) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../20-libsharpyuv0_1.5.0-0.1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... Selecting previously unselected package libdav1d7:arm64. Preparing to unpack .../21-libdav1d7_1.5.0-1+b1_arm64.deb ... Unpacking libdav1d7:arm64 (1.5.0-1+b1) ... Selecting previously unselected package libheif-plugin-dav1d:arm64. Preparing to unpack .../22-libheif-plugin-dav1d_1.19.5-1+b1_arm64.deb ... Unpacking libheif-plugin-dav1d:arm64 (1.19.5-1+b1) ... Selecting previously unselected package libde265-0:arm64. Preparing to unpack .../23-libde265-0_1.0.15-1+b2_arm64.deb ... Unpacking libde265-0:arm64 (1.0.15-1+b2) ... Selecting previously unselected package libheif-plugin-libde265:arm64. Preparing to unpack .../24-libheif-plugin-libde265_1.19.5-1+b1_arm64.deb ... Unpacking libheif-plugin-libde265:arm64 (1.19.5-1+b1) ... Selecting previously unselected package libheif1:arm64. Preparing to unpack .../25-libheif1_1.19.5-1+b1_arm64.deb ... Unpacking libheif1:arm64 (1.19.5-1+b1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../26-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../27-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../28-liblcms2-2_2.16-2_arm64.deb ... Unpacking liblcms2-2:arm64 (2.16-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../29-libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../30-libglib2.0-0t64_2.82.4-2_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.82.4-2) ... Selecting previously unselected package liblqr-1-0:arm64. Preparing to unpack .../31-liblqr-1-0_0.4.2-2.1+b2_arm64.deb ... Unpacking liblqr-1-0:arm64 (0.4.2-2.1+b2) ... Selecting previously unselected package libltdl7:arm64. Preparing to unpack .../32-libltdl7_2.5.4-2_arm64.deb ... Unpacking libltdl7:arm64 (2.5.4-2) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../33-libopenjp2-7_2.5.0-2+b4_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.0-2+b4) ... Selecting previously unselected package libraw23t64:arm64. Preparing to unpack .../34-libraw23t64_0.21.3-1+b1_arm64.deb ... Unpacking libraw23t64:arm64 (0.21.3-1+b1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../35-libdeflate0_1.23-1+b1_arm64.deb ... Unpacking libdeflate0:arm64 (1.23-1+b1) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../36-liblerc4_4.0.0+ds-5_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-5) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../37-libwebp7_1.5.0-0.1_arm64.deb ... Unpacking libwebp7:arm64 (1.5.0-0.1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../38-libtiff6_4.5.1+git230720-5_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-5) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../39-libwebpdemux2_1.5.0-0.1_arm64.deb ... Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../40-libwebpmux3_1.5.0-0.1_arm64.deb ... Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../41-libxau6_1%3a1.0.11-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../42-libxdmcp6_1%3a1.1.5-1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../43-libxcb1_1.17.0-2+b1_arm64.deb ... Unpacking libxcb1:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../44-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../45-libx11-6_2%3a1.8.10-2_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.10-2) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../46-libxext6_2%3a1.3.4-1+b3_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b3) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../47-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../48-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package imagemagick-7-common. Preparing to unpack .../49-imagemagick-7-common_8%3a7.1.1.43+dfsg1-1_all.deb ... Unpacking imagemagick-7-common (8:7.1.1.43+dfsg1-1) ... Selecting previously unselected package libmagickcore-7.q16-10:arm64. Preparing to unpack .../50-libmagickcore-7.q16-10_8%3a7.1.1.43+dfsg1-1_arm64.deb ... Unpacking libmagickcore-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... Selecting previously unselected package libmagickwand-7.q16-10:arm64. Preparing to unpack .../51-libmagickwand-7.q16-10_8%3a7.1.1.43+dfsg1-1_arm64.deb ... Unpacking libmagickwand-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../52-poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../53-libpython3.13-minimal_3.13.1-3_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.1-3) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../54-python3.13-minimal_3.13.1-3_arm64.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Setting up libpython3.13-minimal:arm64 (3.13.1-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.1-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23129 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_arm64.deb ... 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Setting up libk5crypto3:arm64 (1.21.3-4) ... Setting up libltdl7:arm64 (2.5.4-2) ... Setting up libfftw3-double3:arm64 (3.3.10-2+b1) ... Setting up libglapi-mesa:arm64 (24.3.3-1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:arm64 (14.2.0-14) ... Setting up libraw23t64:arm64 (0.21.3-1+b1) ... Setting up libvulkan1:arm64 (1.4.304.0-1) ... Setting up libboost-atomic1.83-dev:arm64 (1.83.0-4) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.6.0-2) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libnghttp3-dev:arm64 (1.6.0-2) ... Setting up liblzma-dev:arm64 (5.6.3-1+b1) ... Setting up libsigc++-3.0-0:arm64 (3.6.0-2+b1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up robin-map-dev (1.3.0-1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up libnuma1:arm64 (2.0.18-1+b1) ... Setting up libpcre2-posix3:arm64 (10.44-5) ... Setting up dwz (0.15-1+b1) ... Setting up wayland-protocols (1.39-1) ... 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Setting up libinchi1.07 (1.07.2+dfsg-1) ... Setting up libdeflate-dev:arm64 (1.23-1+b1) ... Setting up libdrm-common (2.4.123-1) ... Setting up libxcomposite1:arm64 (1:0.4.6-1) ... Setting up readline-common (8.2-6) ... Setting up libicu-dev:arm64 (72.1-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up dbus-bin (1.16.0-1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b6) ... Setting up libblas-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up tao-pegtl-dev (3.2.7-1) ... Setting up libvorbisenc2:arm64 (1.3.7-2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up libxkbcommon0:arm64 (1.7.0-2) ... Setting up libwayland-client0:arm64 (1.23.0-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up libxcb-dri3-0:arm64 (1.17.0-2+b1) ... Setting up libblkid-dev:arm64 (2.40.4-1) ... Setting up libllvm19:arm64 (1:19.1.7-1) ... Setting up libwayland-server0:arm64 (1.23.0-1+b1) ... Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libgsl-dev (2.8+dfsg-5) ... Setting up libxdamage1:arm64 (1:1.1.6-1+b2) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-3) ... Setting up libssm2:arm64 (1.4.0-2+b3) ... Setting up libxau-dev:arm64 (1:1.0.11-1) ... Setting up libboost-chrono1.83-dev:arm64 (1.83.0-4) ... Setting up libpcre2-dev:arm64 (10.44-5) ... Setting up nettle-dev:arm64 (3.10-1+b1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b3) ... Setting up libice-dev:arm64 (2:1.1.1-1) ... Setting up libtool (2.5.4-2) ... Setting up libselinux1-dev:arm64 (3.7-3+b1) ... Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libfribidi-dev:arm64 (1.0.16-1) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libxkbcommon-dev:arm64 (1.7.0-2) ... Setting up gemmi-dev (0.6.5+ds-2+b2) ... Setting up libboost-system-dev:arm64 (1.83.0.2+b2) ... Setting up libpng-dev:arm64 (1.6.45-1) ... Setting up libavahi-common3:arm64 (0.8-16) ... Setting up libboost-serialization1.83-dev:arm64 (1.83.0-4) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libjbig-dev:arm64 (2.1-6.1+b2) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up dbus-daemon (1.16.0-1) ... Setting up libngtcp2-dev:arm64 (1.9.1-1) ... Setting up libffi-dev:arm64 (3.4.6-1) ... Setting up libccp4f0t64:arm64 (8.0.0-4) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:arm64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:arm64 (535.171.04-1+b1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libvorbisfile3:arm64 (1.3.7-2+b1) ... Setting up libsigc++-3.0-dev:arm64 (3.6.0-2+b1) ... Setting up libxdmcp-dev:arm64 (1:1.1.5-1) ... Setting up libwayland-bin (1.23.0-1+b1) ... Setting up libglib2.0-0t64:arm64 (2.82.4-2) ... Setting up libwebp-dev:arm64 (1.5.0-0.1) ... Setting up libllvm17t64:arm64 (1:17.0.6-20+b1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libtiff-dev:arm64 (4.5.1+git230720-5) ... Setting up libxfixes3:arm64 (1:6.0.0-2+b3) ... Setting up libboost-date-time1.83-dev:arm64 (1.83.0-4) ... Setting up x11proto-core-dev (2024.1-1) ... Setting up libldap-dev:arm64 (2.6.9+dfsg-1) ... Setting up dbus (1.16.0-1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-5+b1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libxinerama1:arm64 (2:1.1.4-3+b3) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up libxrandr2:arm64 (2:1.5.4-1+b2) ... Setting up libelf-dev:arm64 (0.192-4) ... Setting up libboost-regex1.83-dev:arm64 (1.83.0-4) ... Setting up gir1.2-glib-2.0:arm64 (2.82.4-2) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.7-2+b1) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up libssm-dev:arm64 (1.4.0-2+b3) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up libdrm2:arm64 (2.4.123-1) ... Setting up libdatrie-dev:arm64 (0.2.13-3+b1) ... Setting up liblqr-1-0:arm64 (0.4.2-2.1+b2) ... Setting up gir1.2-glib-2.0-dev:arm64 (2.82.4-2) ... Setting up groff-base (1.23.0-7) ... Setting up libwayland-cursor0:arm64 (1.23.0-1+b1) ... Setting up libpam-systemd:arm64 (257.2-2) ... Setting up libharfbuzz0b:arm64 (10.2.0-1) ... Setting up libgirepository-1.0-1:arm64 (1.82.0-4) ... Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.12+dfsg-1+b1) ... Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libfontconfig1:arm64 (2.15.0-2) ... Setting up libsm6:arm64 (2:1.2.4-1) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-3) ... Setting up libavahi-client3:arm64 (0.8-16) ... Setting up libmount-dev:arm64 (2.40.4-1) ... Setting up libp11-kit-dev:arm64 (0.25.5-3) ... Setting up libgraphene-1.0-0:arm64 (1.10.8-5) ... Setting up libpython3-stdlib:arm64 (3.13.1-2) ... Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ... Setting up libpython3.13:arm64 (3.13.1-3) ... Setting up libgnutls30t64:arm64 (3.8.8-2) ... Setting up gir1.2-graphene-1.0:arm64 (1.10.8-5) ... Setting up libboost-thread1.83-dev:arm64 (1.83.0-4) ... Setting up libvorbis-dev:arm64 (1.3.7-2+b1) ... Setting up libgnutls-openssl27t64:arm64 (3.8.8-2) ... Setting up gtk-update-icon-cache (4.16.12+ds-1) ... Setting up libnghttp2-dev:arm64 (1.64.0-1) ... Setting up libibverbs1:arm64 (55.0-1) ... Setting up fontconfig (2.15.0-2) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b3) ... Setting up libgio-2.0-dev:arm64 (2.82.4-2) ... Setting up libharfbuzz-icu0:arm64 (10.2.0-1) ... Setting up libxcb1-dev:arm64 (1.17.0-2+b1) ... Setting up libglibmm-2.68-1t64:arm64 (2.82.0-1) ... Setting up libxi6:arm64 (2:1.8.2-1) ... Setting up gir1.2-gdkpixbuf-2.0:arm64 (2.42.12+dfsg-1+b1) ... Setting up libccp4-dev:arm64 (8.0.0-4) ... Setting up ibverbs-providers:arm64 (55.0-1) ... Setting up python3.13 (3.13.1-3) ... Setting up libgirepository-2.0-0:arm64 (2.82.4-2) ... Setting up libsm-dev:arm64 (2:1.2.4-1) ... Setting up libdrm-radeon1:arm64 (2.4.123-1) ... Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxcursor1:arm64 (1:1.2.3-1) ... Setting up nanobind-dev (2.4.0-1) ... Setting up libpango-1.0-0:arm64 (1.56.1-1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libx11-dev:arm64 (2:1.8.10-2) ... Setting up libcloudproviders0:arm64 (0.3.6-1+b1) ... Setting up bc (1.07.1-4+b1) ... Setting up libglib2.0-bin (2.82.4-2) ... Setting up python3 (3.13.1-2) ... Setting up libharfbuzz-gobject0:arm64 (10.2.0-1) ... Setting up libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Setting up python3-zipp (3.21.0-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhwloc-plugins:arm64 (2.11.2-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' -> '/usr/lib/systemd/system/man-db.timer'. Setting up libwayland-dev:arm64 (1.23.0-1+b1) ... Setting up libdw-dev:arm64 (0.192-4) ... Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libcolord2:arm64 (1.4.7-1+b2) ... Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libfreetype-dev:arm64 (2.13.3+dfsg-1) ... Setting up libdconf1:arm64 (0.40.0-5) ... Setting up libcairomm-1.16-1:arm64 (1.18.0-1+b2) ... Setting up libxfixes-dev:arm64 (1:6.0.0-2+b3) ... Setting up libxcb-shm0-dev:arm64 (1.17.0-2+b1) ... Setting up dbus-user-session (1.16.0-1) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libgnutls-dane0t64:arm64 (3.8.8-2) ... Setting up libharfbuzz-cairo0:arm64 (10.2.0-1) ... Setting up adwaita-icon-theme (47.0-2) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up python3-certifi (2024.12.14+ds-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up gir1.2-girepository-2.0:arm64 (1.82.0-4) ... Setting up libgssrpc4t64:arm64 (1.21.3-4) ... Setting up libpython3.13-dev:arm64 (3.13.1-3) ... Setting up python3-gi (3.50.0-4) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b2) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up libxcb-render0-dev:arm64 (1.17.0-2+b1) ... Setting up libpmix2t64:arm64 (5.0.6-1) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up libxext-dev:arm64 (2:1.3.4-1+b3) ... Setting up libthai-dev:arm64 (0.1.29-2+b1) ... Setting up libgdk-pixbuf2.0-bin (2.42.12+dfsg-1+b1) ... Setting up libharfbuzz-subset0:arm64 (10.2.0-1) ... Setting up librdmacm1t64:arm64 (55.0-1) ... Setting up libcairo-gobject2:arm64 (1.18.2-2) ... Setting up libpangoft2-1.0-0:arm64 (1.56.1-1) ... Setting up libxi-dev:arm64 (2:1.8.2-1) ... Setting up libxrender-dev:arm64 (1:0.9.10-1.1+b3) ... Setting up libcups2t64:arm64 (2.4.10-2+b1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ... Setting up libhsakmt1:arm64 (6.1.2+ds-1) ... Setting up libboost-thread-dev:arm64 (1.83.0.2+b2) ... Setting up libpangocairo-1.0-0:arm64 (1.56.1-1) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-4) ... Setting up libxdamage-dev:arm64 (1:1.1.6-1+b2) ... Setting up libgnutls28-dev:arm64 (3.8.8-2) ... Setting up libcairo-script-interpreter2:arm64 (1.18.2-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up libfabric1:arm64 (1.17.0-3.1) ... Setting up mesa-libgallium:arm64 (24.3.3-1) ... Setting up libgio-2.0-dev-bin (2.82.4-2) ... Setting up libvulkan-dev:arm64 (1.4.304.0-1) ... Setting up gir1.2-freedesktop:arm64 (1.82.0-4) ... Setting up girepository-tools:arm64 (2.82.4-2) ... Setting up libpython3-dev:arm64 (3.13.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpangoxft-1.0-0:arm64 (1.56.1-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:arm64 (8.11.1-1+b1) ... Setting up librdkit1t64 (202409.4-1) ... Setting up libkdb5-10t64:arm64 (1.21.3-4) ... Setting up libgbm1:arm64 (24.3.3-1) ... Setting up libfontconfig-dev:arm64 (2.15.0-2) ... Setting up libxcomposite-dev:arm64 (1:0.4.6-1) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3.13-dev (3.13.1-3) ... Setting up libxcursor-dev:arm64 (1:1.2.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libgl1-mesa-dri:arm64 (24.3.3-1) ... Setting up pango1.0-tools (1.56.1-1) ... Setting up libcurl3t64-gnutls:arm64 (8.11.1-1+b1) ... Setting up debhelper (13.24.1) ... Setting up dconf-service (0.40.0-5) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.9.1-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up gir1.2-harfbuzz-0.0:arm64 (10.2.0-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up gir1.2-pango-1.0:arm64 (1.56.1-1) ... Setting up libxrandr-dev:arm64 (2:1.5.4-1+b2) ... Setting up libegl-mesa0:arm64 (24.3.3-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-rdkit (202409.4-1) ... Setting up python3-dev (3.13.1-2) ... Setting up gir1.2-freedesktop-dev:arm64 (1.82.0-4) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up libboost-python1.83-dev (1.83.0-4) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up librdkit-dev (202409.4-1) ... Setting up libxinerama-dev:arm64 (2:1.1.4-3+b3) ... Setting up libhsa-runtime64-1:arm64 (6.1.2-2) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-4) ... Setting up libegl1:arm64 (1.7.0-1+b2) ... Setting up cmake (3.31.4-2) ... Setting up libpangomm-2.48-1t64:arm64 (2.56.1-1) ... Setting up libxft-dev:arm64 (2.3.6-1+b3) ... Setting up krb5-multidev:arm64 (1.21.3-4) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up libgs10-common (10.04.0~dfsg-2) ... Setting up libglib2.0-dev-bin (2.82.4-2) ... Setting up libglx-mesa0:arm64 (24.3.3-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up libglx0:arm64 (1.7.0-1+b2) ... Setting up dconf-gsettings-backend:arm64 (0.40.0-5) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up libkrb5-dev:arm64 (1.21.3-4) ... Setting up libgl1:arm64 (1.7.0-1+b2) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up libglib2.0-dev:arm64 (2.82.4-2) ... Setting up libgraphene-1.0-dev:arm64 (1.10.8-5) ... Setting up libglx-dev:arm64 (1.7.0-1+b2) ... Setting up libcairo2-dev:arm64 (1.18.2-2) ... Setting up libglibmm-2.68-dev:arm64 (2.82.0-1) ... Setting up libgtk-4-common (4.16.12+ds-1) ... Setting up libcairomm-1.16-dev:arm64 (1.18.0-1+b2) ... Setting up libgl-dev:arm64 (1.7.0-1+b2) ... Setting up libgs10:arm64 (10.04.0~dfsg-2+b1) ... Setting up dh-python (6.20250108) ... Setting up libgdk-pixbuf-2.0-dev:arm64 (2.42.12+dfsg-1+b1) ... Setting up python-gi-dev (3.50.0-4) ... Setting up libucx0:arm64 (1.17.0+ds-3) ... Setting up libharfbuzz-dev:arm64 (10.2.0-1) ... Setting up libegl-dev:arm64 (1.7.0-1+b2) ... Setting up libepoxy-dev:arm64 (1.5.10-2) ... Setting up ghostscript (10.04.0~dfsg-2+b1) ... Setting up libcurl4-gnutls-dev:arm64 (8.11.1-1+b1) ... Setting up libpango1.0-dev:arm64 (1.56.1-1) ... Setting up libgtk-4-1:arm64 (4.16.12+ds-1) ... Setting up libpangomm-2.48-dev:arm64 (2.56.1-1) ... Setting up libgles-dev:arm64 (1.7.0-1+b2) ... Setting up gir1.2-gtk-4.0:arm64 (4.16.12+ds-1) ... Setting up libopenmpi40:arm64 (5.0.6-3) ... Setting up sfftw2 (2.1.5-7+b1) ... Setting up libglvnd-dev:arm64 (1.7.0-1+b2) ... Setting up fftw2 (2.1.5-7+b1) ... Setting up sfftw-dev (2.1.5-7+b1) ... Setting up libgtkmm-4.0-0:arm64 (4.16.0-1) ... Setting up libclipper2:arm64 (2.1.20201109-2+b3) ... Setting up fftw-dev (2.1.5-7+b1) ... Setting up libegl1-mesa-dev:arm64 (24.3.3-1) ... Setting up libgtk-4-dev:arm64 (4.16.12+ds-1) ... Setting up libclipper-dev:arm64 (2.1.20201109-2+b3) ... Setting up libgtkmm-4.0-dev:arm64 (4.16.0-1) ... Setting up libheif-plugin-dav1d:arm64 (1.19.5-1+b1) ... Setting up libheif-plugin-libde265:arm64 (1.19.5-1+b1) ... Setting up libheif1:arm64 (1.19.5-1+b1) ... Setting up libmagickcore-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... Setting up libmagickwand-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... Setting up imagemagick-7.q16 (8:7.1.1.43+dfsg1-1) ... update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist Setting up imagemagick (8:7.1.1.43+dfsg1-1) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for systemd (257.2-2) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/coot-1.1.09+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../coot_1.1.09+dfsg-4_source.changes dpkg-buildpackage: info: source package coot dpkg-buildpackage: info: source version 1.1.09+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_clean --buildsystem cmake make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'macros'. libtoolize: copying file 'macros/libtool.m4' libtoolize: copying file 'macros/ltoptions.m4' libtoolize: copying file 'macros/ltsugar.m4' libtoolize: copying file 'macros/ltversion.m4' libtoolize: copying file 'macros/lt~obsolete.m4' configure.ac:41: installing './compile' configure.ac:31: installing './missing' MoleculesToTriangles/CXXClasses/Makefile.am: installing './depcomp' api/Makefile.am:113: installing './py-compile' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_configure -- --with-enhanced-ligand-tools --disable-static --with-gemmi=/usr/lib/aarch64-linux-gnu --with-libdw --with-sound ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-enhanced-ligand-tools --disable-static --with-gemmi=/usr/lib/aarch64-linux-gnu --with-libdw --with-sound checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking which libtool initialization strategy to adopt... AC-PROG-LIBTOOL checking what warning flags to pass to the C compiler... -Wall -Wunused checking what language compliance flags to pass to the C compiler... checking what warning flags to pass to the C++ compiler... -Wall -Wno-unused checking what language compliance flags to pass to the C++ compiler... checking for sys/stdtypes.h... no checking for OpenMP flag of C compiler... -fopenmp checking whether g++ supports C++11 features by default... yes checking for std::thread in thread... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking if this is MINGW on Windows... no checking if this is msys2 windows 64... no checking for libpng >= 1.2... yes checking for cairo >= 1.14... yes checking for SQLite3... yes checking for libdw >= 0.20... yes checking for mmdb2... yes checking for ssm... yes checking for non-prefixed single-precision FFTW2 (fftw.h)... no yes checking for Clipper... yes checking for gsl... yes checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_blas_dgemm in -lgsl... yes checking for glm >= 0.9.9... yes checking for gtk4 >= 4.4... yes checking for epoxy >= 1.5... yes checking for a Python interpreter with version >= 3.7... python3 checking for python3... /usr/bin/python3 checking for python3 version... 3.13 checking for python3 platform... linux checking for python3 script directory... ${prefix}/lib/python3/dist-packages checking for python3 extension module directory... ${exec_prefix}/lib/python3/dist-packages checking for python3.13... (cached) /usr/bin/python3 checking for a version of Python >= '2.1.0'... yes checking for the sysconfig Python package... yes checking for Python include path... -I/usr/include/python3.13 checking for Python library path... -L/usr/lib/aarch64-linux-gnu -lpython3.13 checking for Python site-packages path... /usr/lib/python3.13/site-packages checking for Python platform specific site-packages path... /usr/lib/python3.13/site-packages checking python extra libraries... -ldl -lm checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... yes checking python3 module: requests... yes checking for pygobject-3.0 >= 3.36... yes checking for boostlib >= (102000)... yes checking whether the Boost::Thread library is available... yes checking for exit in -lboost_thread... yes checking whether the Boost::Python library is available... yes checking whether boost_python is the correct library... no checking whether boost_python312 is the correct library... yes checking for RDKit in /usr OK, good we found RDKit in /usr ENHANCED_LIGAND_TOOLS_CPPFLAGS -DMAKE_ENHANCED_LIGAND_TOOLS checking for GEMMI... yes checking build type... Linux-aarch64-debian-trixie-sid-gtk4 checking for sound... yes checking for vorbisfile >= 1.2... yes checking for alsa >= 1.2... yes Not using MySQL database checking for curl >= 7.9.7... 8.11.1 checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating macros/Makefile config.status: creating pdb-templates/Makefile config.status: creating scheme/Makefile config.status: creating python/Makefile config.status: creating compat/Makefile config.status: creating utils/Makefile config.status: creating coot-utils/Makefile config.status: creating protein_db/Makefile config.status: creating ccp4mg-utils/Makefile config.status: creating coords/Makefile config.status: creating db-main/Makefile config.status: creating density-contour/Makefile config.status: creating angles/Makefile config.status: creating mini-mol/Makefile config.status: creating skeleton/Makefile config.status: creating ligand/Makefile config.status: creating geometry/Makefile config.status: creating ideal/Makefile config.status: creating build/Makefile config.status: creating analysis/Makefile config.status: creating high-res/Makefile config.status: creating cootaneer/Makefile config.status: creating cootilus/Makefile config.status: creating greg-tests/Makefile config.status: creating python-tests/Makefile config.status: creating lidia-core/Makefile config.status: creating doc/Makefile config.status: creating validation-graphs/Makefile config.status: creating python/coot_load_modules.py config.status: creating data/Makefile config.status: creating data/rama-coeffs/Makefile config.status: creating data/metal/Makefile config.status: creating data/cho-models/Makefile config.status: creating data/cho-acedrg/Makefile config.status: creating glTF/Makefile config.status: creating pixmaps/Makefile config.status: creating pixmaps/icons/Makefile config.status: creating textures/Makefile config.status: creating sounds/Makefile config.status: creating rama-data/Makefile config.status: creating man/Makefile config.status: creating api/Makefile config.status: creating pli/Makefile config.status: creating pyrogen/Makefile config.status: creating pyrogen/pyrogen config.status: creating layla/Makefile config.status: creating MoleculesToTriangles/Makefile config.status: creating MoleculesToTriangles/CXXSurface/Makefile config.status: creating MoleculesToTriangles/CXXSurface/MoleculesToTrianglesCXXSurface.pc config.status: creating MoleculesToTriangles/CXXClasses/Makefile config.status: creating MoleculesToTriangles/CXXClasses/MoleculesToTrianglesCXXClasses.pc config.status: creating auxil/Makefile config.status: creating auxil/catcheck/Makefile config.status: creating auxil/rama/Makefile config.status: creating auxil/sec-str/Makefile config.status: creating auxil/strand-analysis/Makefile config.status: creating auxil/vectors/Makefile config.status: creating src/Makefile config.status: creating src/coot config.status: creating src/coot-relocatable-binaries config.status: creating ui/Makefile config.status: executing depfiles commands config.status: executing libtool commands dh_auto_configure --buildsystem cmake cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Looking for mmdb2/mmdb_defs.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libmmdb2.so -- Looking for ssm/ssm_vxedge.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libssm.so -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for clipper/clipper.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-core.so -- FFTW2 libraries - /usr/lib/libsfftw.so -- - /usr/lib/libsrfftw.so -- FFTW2 header directory - /usr/include -- Performing Test _LINKING_WITH_CLIPPER_CORE -- Performing Test _LINKING_WITH_CLIPPER_CORE - Success -- Looking for clipper/clipper-mmdb.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-mmdb.so -- Looking for clipper/clipper-ccp4.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so -- Looking for clipper/clipper-contrib.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-contrib.so -- Looking for clipper/clipper-minimol.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-minimol.so -- Looking for clipper/clipper-cif.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-cif.so -- CCP4 include directory: /usr/include -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/aarch64-linux-gnu/libblas.so -- Found GSL: /usr/include (found version "2.8") -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found PNG: /usr/lib/aarch64-linux-gnu/libpng.so (found version "1.6.45") -- Found gemmi version 0.6.5 -- Found Python: /usr/bin/python3 (found version "3.13.1") found components: Interpreter CMake Warning (dev) at CMakeLists.txt:27 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams system python regex thread serialization -- Found Python: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3.10") found components: Interpreter Development.Module Development.SABIModule -- Note: MAKE_ENHANCED_LIGAND_TOOLS was not enabled -- Configuring done (4.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' Making all in auxil make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making all in catcheck make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' Making all in rama make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' Making all in sec-str make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' Making all in strand-analysis make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' Making all in vectors make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making all in scheme make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' Making all in python make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' Making all in pdb-templates make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' Making all in macros make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' Making all in compat make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o getopt.lo getopt.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 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-DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c getopt.cc -fPIC -DPIC -o .libs/getopt.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-compat.la -rpath /usr/lib/aarch64-linux-gnu getopt.lo getopt1.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/getopt.o .libs/getopt1.o -L/usr/lib/gcc/aarch64-linux-gnu/14 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'/build/reproducible-path/coot-1.1.09+dfsg/compat' Making all in utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 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-I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o setup-syminfo.lo setup-syminfo.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gdk-keysyms.lo gdk-keysyms.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 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-DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dodec.lo dodec.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o win-compat.lo win-compat.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o threads.lo threads.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pir-alignment.lo pir-alignment.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atomic-numbers.cc -fPIC -DPIC -o .libs/atomic-numbers.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-utils.cc -fPIC -DPIC -o .libs/coot-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gdk-keysyms.cc -fPIC -DPIC -o .libs/gdk-keysyms.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-fasta.cc -fPIC -DPIC -o .libs/coot-fasta.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c setup-syminfo.cc -fPIC -DPIC -o .libs/setup-syminfo.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dodec.cc -fPIC -DPIC -o .libs/dodec.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c hsv-rgb.cc -fPIC -DPIC -o .libs/hsv-rgb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pir-alignment.cc -fPIC -DPIC -o .libs/pir-alignment.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c base64-encode-decode.cc -fPIC -DPIC -o .libs/base64-encode-decode.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c win-compat.cc -fPIC -DPIC -o .libs/win-compat.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c threads.cc -fPIC -DPIC -o .libs/threads.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c align-utils.cc -fPIC -DPIC -o .libs/align-utils.o In file included from atomic-numbers.cc:22: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from gdk-keysyms.cc:23: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from setup-syminfo.cc:27: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o split-indices.lo split-indices.cc In file included from pir-alignment.cc:28: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from hsv-rgb.cc:29: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o radix.lo radix.cc In file included from coot-fasta.cc:25: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o logging.lo logging.cc In file included from threads.cc:27: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o insertion-sort.lo insertion-sort.cc In file included from coot-utils.cc:59: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c split-indices.cc -fPIC -DPIC -o .libs/split-indices.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o colour-holder.lo colour-holder.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c radix.cc -fPIC -DPIC -o .libs/radix.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c logging.cc -fPIC -DPIC -o .libs/logging.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c insertion-sort.cc -fPIC -DPIC -o .libs/insertion-sort.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c colour-holder.cc -fPIC -DPIC -o .libs/colour-holder.o /bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-utils.lo coot-fasta.lo atomic-numbers.lo setup-syminfo.lo gdk-keysyms.lo hsv-rgb.lo dodec.lo win-compat.lo threads.lo align-utils.lo base64-encode-decode.lo pir-alignment.lo split-indices.lo radix.lo logging.lo insertion-sort.lo colour-holder.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -ldw -lelf libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-utils.o .libs/coot-fasta.o .libs/atomic-numbers.o .libs/setup-syminfo.o .libs/gdk-keysyms.o .libs/hsv-rgb.o .libs/dodec.o .libs/win-compat.o .libs/threads.o .libs/align-utils.o .libs/base64-encode-decode.o .libs/pir-alignment.o .libs/split-indices.o .libs/radix.o .libs/logging.o .libs/insertion-sort.o .libs/colour-holder.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -ldw -lelf -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-utils.so.0 -o .libs/libcoot-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-utils.so.0" && ln -s "libcoot-utils.so.0.0.0" "libcoot-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-utils.so" && ln -s "libcoot-utils.so.0.0.0" "libcoot-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-utils.la" && ln -s "../libcoot-utils.la" "libcoot-utils.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' Making all in protein_db make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db.lo protein_db.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db_utils.lo protein_db_utils.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rna_db.lo rna_db.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db.cpp -fPIC -DPIC -o .libs/protein_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rna_db.cpp -fPIC -DPIC -o .libs/rna_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db_utils.cpp -fPIC -DPIC -o .libs/protein_db_utils.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-protein-db.la -rpath /usr/lib/aarch64-linux-gnu protein_db.lo protein_db_utils.lo rna_db.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/protein_db.o .libs/protein_db_utils.o .libs/rna_db.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-protein-db.so.0 -o .libs/libcoot-protein-db.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-protein-db.so.0" && ln -s "libcoot-protein-db.so.0.0.0" "libcoot-protein-db.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-protein-db.so" && ln -s "libcoot-protein-db.so.0.0.0" "libcoot-protein-db.so") libtool: link: ( cd ".libs" && rm -f "libcoot-protein-db.la" && ln -s "../libcoot-protein-db.la" "libcoot-protein-db.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' Making all in mini-mol make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-mol.lo mini-mol.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-mol-utils.lo mini-mol-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-quads.lo atom-quads.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-quads.cc -fPIC -DPIC -o .libs/atom-quads.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-mol.cc -fPIC -DPIC -o .libs/mini-mol.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-mol-utils.cc -fPIC -DPIC -o .libs/mini-mol-utils.o In file included from mini-mol.hh:29, from mini-mol.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from mini-mol.hh:29, from mini-mol-utils.hh:22, from mini-mol-utils.cc:22: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ mini-mol.cc: In member function 'std::pair coot::minimol::molecule::get_pos() const': mini-mol.cc:1654:36: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1654 | coot::minimol::molecule::get_pos() const { | ^~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/aarch64-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-mini-mol.so.0 -o .libs/libcoot-mini-mol.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so.0" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so") libtool: link: ( cd ".libs" && rm -f "libcoot-mini-mol.la" && ln -s "../libcoot-mini-mol.la" "libcoot-mini-mol.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' Making all in geometry make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' 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-Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o srs-interface.lo srs-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-geometry.cc -fPIC -DPIC -o .libs/protein-geometry.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-geometry-mmdb.cc -fPIC -DPIC -o .libs/protein-geometry-mmdb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dict-utils.cc -fPIC -DPIC -o .libs/dict-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mol-utils.cc -fPIC -DPIC -o .libs/mol-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse.cc -fPIC -DPIC -o .libs/cif-parse.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c energy-lib.cc -fPIC -DPIC -o .libs/energy-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c link.cc -fPIC -DPIC -o .libs/link.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-sbase.cc -fPIC -DPIC -o .libs/read-sbase.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c glyco-tools.cc -fPIC -DPIC -o .libs/glyco-tools.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dictionary-residue.cc -fPIC -DPIC -o .libs/dictionary-residue.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c srs-interface.cc -fPIC -DPIC -o .libs/srs-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chem_mods.cc -fPIC -DPIC -o .libs/chem_mods.o In file included from srs-interface.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from dict-utils.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-donor-acceptors.lo protein-donor-acceptors.cc In file included from energy-lib.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from read-sbase.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from link.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-graph.lo lbg-graph.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-donor-acceptors.cc -fPIC -DPIC -o .libs/protein-donor-acceptors.o In file included from protein-geometry.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-graph.cc -fPIC -DPIC -o .libs/lbg-graph.o In file included from chem_mods.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cif-parse.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from glyco-tools.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from dictionary-residue.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dreiding.lo dreiding.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dreiding.cc -fPIC -DPIC -o .libs/dreiding.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main-chain.lo main-chain.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c main-chain.cc -fPIC -DPIC -o .libs/main-chain.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o residue-and-atom-specs.lo residue-and-atom-specs.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o intercept-3GP.lo intercept-3GP.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-and-atom-specs.cc -fPIC -DPIC -o .libs/residue-and-atom-specs.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c intercept-3GP.cc -fPIC -DPIC -o .libs/intercept-3GP.o In file included from residue-and-atom-specs.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mol-utils-2.lo mol-utils-2.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o hydrophobic.lo hydrophobic.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mol-utils-2.cc -fPIC -DPIC -o .libs/mol-utils-2.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" 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-DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c hydrophobic.cc -fPIC -DPIC -o .libs/hydrophobic.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-metals-json.lo read-metals-json.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse-link.cc -fPIC -DPIC -o .libs/cif-parse-link.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 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-D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-metals-json.cc -fPIC -DPIC -o .libs/read-metals-json.o In file included from cif-parse-mon-lib.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from read-metals-json.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cif-parse-link.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/aarch64-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/cif-parse.o .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/mol-utils.o .libs/dictionary-residue.o .libs/link.o .libs/glyco-tools.o .libs/dict-utils.o .libs/chem_mods.o .libs/srs-interface.o .libs/protein-donor-acceptors.o .libs/lbg-graph.o .libs/dreiding.o .libs/main-chain.o .libs/residue-and-atom-specs.o .libs/intercept-3GP.o .libs/mol-utils-2.o .libs/hydrophobic.o .libs/cif-parse-link.o .libs/cif-parse-mon-lib.o .libs/read-metals-json.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/compat/.libs ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so.0" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so") libtool: link: ( cd ".libs" && rm -f "libcoot-geometry.la" && ln -s "../libcoot-geometry.la" "libcoot-geometry.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' Making all in lidia-core make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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"-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-molfile.cc -fPIC -DPIC -o .libs/lbg-molfile.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lig-build.cc -fPIC -DPIC -o .libs/lig-build.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-atom-type-t.cc -fPIC -DPIC -o .libs/cod-atom-type-t.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-atom-types.cc -fPIC -DPIC -o .libs/cod-atom-types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-residue.cc -fPIC -DPIC -o .libs/get-residue.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chemical-feature-clusters.cc -fPIC -DPIC -o .libs/chemical-feature-clusters.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bond-table-record-t.cc -fPIC -DPIC -o .libs/bond-table-record-t.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o svg-molecule.lo svg-molecule.cc In file included from lig-build.cc:25: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c svg-molecule.cc -fPIC -DPIC -o .libs/svg-molecule.o In file included from atom-types.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from lbg-molfile.hh:32, from lbg-molfile.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cod-types.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from rdkit-interface.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from chemical-feature-clusters.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from svg-molecule.hh:31, from svg-molecule.cc:29: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from atom-types.cc:30: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-atom-types.cc:28: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-types.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from bond-record-container-t.cc:28: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cod-atom-types.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-atom-type-t.cc:28: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from chemical-feature-clusters.cc:33: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from rdkit-interface.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from bond-record-container-t.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cod-atom-type-t.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/aarch64-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs 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/usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-lidia-core.so.0 -o .libs/libcoot-lidia-core.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so.0" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so") libtool: link: ( cd ".libs" && rm -f "libcoot-lidia-core.la" && ln -s "../libcoot-lidia-core.la" "libcoot-lidia-core.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' Making all in coot-utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c maps-spherical.cc -fPIC -DPIC -o .libs/maps-spherical.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c exp-fit.cc -fPIC -DPIC -o .libs/exp-fit.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trim.cc -fPIC -DPIC -o .libs/trim.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c find-water-baddies.cc -fPIC -DPIC -o .libs/find-water-baddies.o In file included from mmrrcc.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from pepflip-using-difference-map.cc:28: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from maps-spherical.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o diff-diff-map-peaks.lo diff-diff-map-peaks.cc In file included from coot-map-utils.hh:33, from blob-line.cc:27: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-map-utils.hh:33, from trim.cc:21: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-map-utils.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-map-utils.hh:33, from find-water-baddies.cc:29: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c diff-diff-map-peaks.cc -fPIC -DPIC -o .libs/diff-diff-map-peaks.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-texture.lo mini-texture.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o positron.lo positron.cc In file included from slurp-map.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o texture-as-floats.lo texture-as-floats.cc coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': coot-map-utils.cc:973:63: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils.lo coot-coord-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils-nucleotides.lo coot-coord-utils-nucleotides.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-texture.cc -fPIC -DPIC -o .libs/mini-texture.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c positron.cc -fPIC -DPIC -o .libs/positron.o In file included from coot-map-utils.cc:3842: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c texture-as-floats.cc -fPIC -DPIC -o .libs/texture-as-floats.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils.cc -fPIC -DPIC -o .libs/coot-coord-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils-nucleotides.cc -fPIC -DPIC -o .libs/coot-coord-utils-nucleotides.o In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/core/hkl_compute.h:48, from coot-map-utils.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': coot-map-utils.cc:682:39: required from here 682 | fphis_out[hri] = fphis_in[hkl]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/algorithm:60, from coot-map-utils.cc:23: /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = const double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': coot-map-utils.cc:4416:45: required from here 4416 | data.push_back(std::make_pair(A_data[i].first, y)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': coot-map-utils.cc:4501:87: required from here 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': coot-map-utils.cc:4656:69: required from here 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ In file included from positron.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-rama.lo coot-rama.cc In file included from coot-coord-utils.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-coord-utils-nucleotides.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from mini-texture.cc:28: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-h-bonds.lo coot-h-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-rama.cc -fPIC -DPIC -o .libs/coot-rama.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o hole.lo hole.cc In file included from coot-map-utils.hh:33, from texture-as-floats.cc:27: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-h-bonds.cc -fPIC -DPIC -o .libs/coot-h-bonds.o In file included from coot-rama.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-sm-cif.lo read-sm-cif.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c hole.cc -fPIC -DPIC -o .libs/hole.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bonded-pairs.lo bonded-pairs.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o helix-analysis.lo helix-analysis.cc /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': coot-map-utils.cc:973:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^~~~ coot-map-utils.cc: In lambda function: coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-sm-cif.cc -fPIC -DPIC -o .libs/read-sm-cif.o coot-map-utils.cc: In function 'void coot::util::reverse_map(clipper::Xmap*)': coot-map-utils.cc:4713:55: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4713 | std::pair mv = mean_and_variance(xmap); | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bonded-pairs.cc -fPIC -DPIC -o .libs/bonded-pairs.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c helix-analysis.cc -fPIC -DPIC -o .libs/helix-analysis.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o elastic.lo elastic.cc In file included from hole.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c elastic.cc -fPIC -DPIC -o .libs/elastic.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glyco-torsions.lo glyco-torsions.cc hole.cc: In member function 'std::pair coot::hole::optimize_point(const clipper::Coord_orth&, int)': hole.cc:253:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 253 | coot::hole::optimize_point(const clipper::Coord_orth &pt, int selhnd) { | ^ In file included from read-sm-cif.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-least-squares.lo coot-least-squares.cc In file included from elastic.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/clipper_instance.h:49, from read-sm-cif.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': read-sm-cif.cc:1096:38: required from here 1096 | if (!my_fsigf[ih.hkl()].missing()) { | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c glyco-torsions.cc -fPIC -DPIC -o .libs/glyco-torsions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-least-squares.cc -fPIC -DPIC -o .libs/coot-least-squares.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-overlaps.lo atom-overlaps.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o reduce.lo reduce.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-selection-container.lo atom-selection-container.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-overlaps.cc -fPIC -DPIC -o .libs/atom-overlaps.o In file included from glyco-torsions.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c reduce.cc -fPIC -DPIC -o .libs/reduce.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-selection-container.cc -fPIC -DPIC -o .libs/atom-selection-container.o coot-map-utils.cc: In lambda function: coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o contact-info.lo contact-info.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-shelx-ins.lo coot-shelx-ins.cc coot-map-utils.cc: In lambda function: coot-map-utils.cc:4501:87: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from atom-overlaps.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c contact-info.cc -fPIC -DPIC -o .libs/contact-info.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-shelx-ins.cc -fPIC -DPIC -o .libs/coot-shelx-ins.o In file included from reduce.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from atom-selection-container.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-shelx-ins.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o secondary-structure-headers.lo secondary-structure-headers.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o plane-utils.lo plane-utils.cc In file included from atom-selection-container.cc:33: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c secondary-structure-headers.cc -fPIC -DPIC -o .libs/secondary-structure-headers.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c plane-utils.cc -fPIC -DPIC -o .libs/plane-utils.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-beta-deviations.lo c-beta-deviations.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-beta-deviations.cc -fPIC -DPIC -o .libs/c-beta-deviations.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lidia-core-functions.lo lidia-core-functions.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lidia-core-functions.cc -fPIC -DPIC -o .libs/lidia-core-functions.o In file included from atom-selection-container.cc:915: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c contacts-by-bricks.cc -fPIC -DPIC -o .libs/contacts-by-bricks.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o stack-and-pair.lo stack-and-pair.cc In file included from merge-atom-selections.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c stack-and-pair.cc -fPIC -DPIC -o .libs/stack-and-pair.o In file included from contacts-by-bricks.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fast-eigens.lo fast-eigens.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fast-eigens.cc -fPIC -DPIC -o .libs/fast-eigens.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from lidia-core-functions.cc:29: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o strand-fragments.lo strand-fragments.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c strand-fragments.cc -fPIC -DPIC -o .libs/strand-fragments.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sfcalc-genmap.lo sfcalc-genmap.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 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-DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_shiftfield.lo coot_shiftfield.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cablam-markup.cc -fPIC -DPIC -o .libs/cablam-markup.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o shiftfield.lo shiftfield.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_shiftfield.cpp -fPIC -DPIC -o .libs/coot_shiftfield.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c shiftfield.cpp -fPIC -DPIC -o .libs/shiftfield.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fib-sphere.lo fib-sphere.cc coot-map-utils.cc: In function 'bool coot::util::map_fill_from_mtz(clipper::Xmap*, std::string, std::string, std::string, std::string, short int, float, short int, float)': coot-map-utils.cc:59:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 59 | coot::util::map_fill_from_mtz(clipper::Xmap *xmap, | ^~~~ In file included from cablam-markup.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o polar-atoms.lo polar-atoms.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from coot_shiftfield.h:31, from coot_shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': coot_shiftfield.cpp:153:81: required from here 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': coot_shiftfield.cpp:209:29: required from here 209 | fphi[ih] = fc[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fib-sphere.cc -fPIC -DPIC -o .libs/fib-sphere.o coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': coot_shiftfield.cpp:153:67: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; coot_shiftfield.cpp:209:16: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c polar-atoms.cc -fPIC -DPIC -o .libs/polar-atoms.o In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from shiftfield.h:31, from shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::F_phi; C = clipper::datatypes::Compute_scale_u_aniso >; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from sfcalc-genmap.cc:30: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_abcd_from_phifom; T = clipper::datatypes::ABCD]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::ABCD' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o 3d-texture.lo 3d-texture.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c 3d-texture.cc -fPIC -DPIC -o .libs/3d-texture.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o merge-molecules.lo merge-molecules.cc /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fragment-container.lo fragment-container.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c merge-molecules.cc -fPIC -DPIC -o .libs/merge-molecules.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fragment-container.cc -fPIC -DPIC -o .libs/fragment-container.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mutate.lo mutate.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o merge-C-and-N-terminii.lo merge-C-and-N-terminii.cc coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 121 | coot::shift_field_b_factor_refinement(const clipper::HKL_data< clipper::datatypes::F_sigF > &fo0, | ^~~~ coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mutate.cc -fPIC -DPIC -o .libs/mutate.o coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 coot_shiftfield.cpp:209:29: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c merge-C-and-N-terminii.cc -fPIC -DPIC -o .libs/merge-C-and-N-terminii.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cylinder.lo cylinder.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cylinder.cc -fPIC -DPIC -o .libs/cylinder.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o oct.lo oct.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo 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prideout-octasphere.cc -fPIC -DPIC -o .libs/prideout-octasphere.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit 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-DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-tree-extras.lo coot-tree-extras.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 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-I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lsq-improve.lo lsq-improve.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lsq-improve.cc -fPIC -DPIC -o .libs/lsq-improve.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c water-coordination.cc -fPIC -DPIC -o .libs/water-coordination.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils-glyco.lo coot-coord-utils-glyco.cc In file included from coot-coord-extras.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-tree-extras.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-coord-lsq.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" 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-mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils-glyco.cc -fPIC -DPIC -o .libs/coot-coord-utils-glyco.o In file included from coot-coord-utils-glyco.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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-DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c jed-flip.cc -fPIC -DPIC -o .libs/jed-flip.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-map-heavy.lo coot-map-heavy.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-map-heavy.cc -fPIC -DPIC -o .libs/coot-map-heavy.o In file included from ../mini-mol/mini-mol.hh:29, from coot-coord-extras.hh:33, from jed-flip.hh:32, from jed-flip.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-fffear.lo coot-fffear.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o spherical-harmonics.lo spherical-harmonics.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o segmap.lo segmap.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-fffear.cc -fPIC -DPIC -o .libs/coot-fffear.o In file included from coot-map-heavy.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c spherical-harmonics.cc -fPIC -DPIC -o .libs/spherical-harmonics.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c segmap.cc -fPIC -DPIC -o .libs/segmap.o In file included from ../mini-mol/mini-mol.hh:29, from coot-map-heavy.hh:28, from coot-fffear.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ coot-fffear.cc: In constructor 'coot::util::fffear_search::fffear_search(mmdb::Manager*, int, const clipper::Xmap&, float, bool)': coot-fffear.cc:159:70: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 159 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo glyco-torsions.lo coot-least-squares.lo atom-overlaps.lo reduce.lo atom-selection-container.lo contact-info.lo coot-shelx-ins.lo secondary-structure-headers.lo plane-utils.lo c-beta-deviations.lo lidia-core-functions.lo atom-tools.lo bonded-atoms.lo bricks.lo helix-like.lo merge-atom-selections.lo contacts-by-bricks.lo stack-and-pair.lo fast-eigens.lo strand-fragments.lo sfcalc-genmap.lo cablam-markup.lo coot_shiftfield.lo shiftfield.lo fib-sphere.lo polar-atoms.lo 3d-texture.lo merge-molecules.lo fragment-container.lo mutate.lo merge-C-and-N-terminii.lo cylinder.lo cylinder-with-rotation-translation.lo oct.lo prideout-octasphere.lo simple-mesh.lo shapes.lo cmtz-interface.lo pugixml.lo parse-pisa.lo gltf-export.lo pae.lo ../lidia-core/libcoot-lidia-core.la ../protein_db/libcoot-protein-db.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-utils.o .libs/coot-coord-utils-nucleotides.o .libs/coot-rama.o .libs/coot-h-bonds.o .libs/hole.o .libs/read-sm-cif.o .libs/bonded-pairs.o .libs/helix-analysis.o .libs/elastic.o .libs/glyco-torsions.o .libs/coot-least-squares.o .libs/atom-overlaps.o .libs/reduce.o .libs/atom-selection-container.o .libs/contact-info.o .libs/coot-shelx-ins.o .libs/secondary-structure-headers.o .libs/plane-utils.o .libs/c-beta-deviations.o .libs/lidia-core-functions.o .libs/atom-tools.o .libs/bonded-atoms.o .libs/bricks.o .libs/helix-like.o .libs/merge-atom-selections.o .libs/contacts-by-bricks.o .libs/stack-and-pair.o .libs/fast-eigens.o .libs/strand-fragments.o .libs/sfcalc-genmap.o .libs/cablam-markup.o .libs/coot_shiftfield.o .libs/shiftfield.o .libs/fib-sphere.o .libs/polar-atoms.o .libs/3d-texture.o .libs/merge-molecules.o .libs/fragment-container.o .libs/mutate.o .libs/merge-C-and-N-terminii.o .libs/cylinder.o .libs/cylinder-with-rotation-translation.o .libs/oct.o .libs/prideout-octasphere.o .libs/simple-mesh.o .libs/shapes.o .libs/cmtz-interface.o .libs/pugixml.o .libs/parse-pisa.o .libs/gltf-export.o .libs/pae.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/protein_db/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs ../lidia-core/.libs/libcoot-lidia-core.so ../protein_db/.libs/libcoot-protein-db.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-utils.so.0 -o .libs/libcoot-coord-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-coord-utils.so.0" && ln -s "libcoot-coord-utils.so.0.0.0" "libcoot-coord-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coord-utils.so" && ln -s "libcoot-coord-utils.so.0.0.0" "libcoot-coord-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coord-utils.la" && ln -s "../libcoot-coord-utils.la" "libcoot-coord-utils.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-map-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo pepflip-using-difference-map.lo exp-fit.lo blob-line.lo slurp-map.lo find-water-baddies.lo diff-diff-map-peaks.lo mini-texture.lo positron.lo texture-as-floats.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-extras.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo jed-flip.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-extras.o .libs/coot-coord-lsq.o .libs/coot-tree-extras.o .libs/water-coordination.o .libs/lsq-improve.o .libs/coot-coord-utils-glyco.o .libs/jed-flip.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-extras.so.0 -o .libs/libcoot-coord-extras.so.0.0.0 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-utils.o .libs/peak-search.o .libs/peak-search-from-list.o .libs/trim.o .libs/xmap-stats.o .libs/maps-spherical.o .libs/pepflip-using-difference-map.o .libs/exp-fit.o .libs/blob-line.o .libs/slurp-map.o .libs/find-water-baddies.o .libs/diff-diff-map-peaks.o .libs/mini-texture.o .libs/positron.o .libs/texture-as-floats.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -lz -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-utils.so.0 -o .libs/libcoot-map-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so.0" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so") libtool: link: (cd ".libs" && rm -f "libcoot-coord-extras.so.0" && ln -s "libcoot-coord-extras.so.0.0.0" "libcoot-coord-extras.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coord-extras.so" && ln -s "libcoot-coord-extras.so.0.0.0" "libcoot-coord-extras.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coord-extras.la" && ln -s "../libcoot-coord-extras.la" "libcoot-coord-extras.la" ) libtool: link: ( cd ".libs" && rm -f "libcoot-map-utils.la" && ln -s "../libcoot-map-utils.la" "libcoot-map-utils.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-mmrrcc mmrrcc.o ./libcoot-map-utils.la ./libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-map-heavy.la -rpath /usr/lib/aarch64-linux-gnu coot-map-heavy.lo coot-fffear.lo spherical-harmonics.lo segmap.lo libcoot-map-utils.la libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-heavy.o .libs/coot-fffear.o .libs/spherical-harmonics.o .libs/segmap.o -Wl,-rpath 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/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-heavy.so.0 -o .libs/libcoot-map-heavy.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so.0" && ln -s "libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so" && ln -s "libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so") libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-mmrrcc mmrrcc.o ./.libs/libcoot-map-utils.so ./.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: ( cd ".libs" && rm -f "libcoot-map-heavy.la" && ln -s "../libcoot-map-heavy.la" "libcoot-map-heavy.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' Making all in angles make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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-DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo `test -f 'AngleInfo-theta_2-autogen.cc' || echo './'`AngleInfo-theta_2-autogen.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo-theta_2-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo-angle-torsions-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-AngleInfo.la -rpath /usr/lib/aarch64-linux-gnu libcoot_AngleInfo_la-AngleInfo.lo libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-AngleInfo.so.0 -o .libs/libcoot-AngleInfo.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-AngleInfo.so.0" && ln -s "libcoot-AngleInfo.so.0.0.0" "libcoot-AngleInfo.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-AngleInfo.so" && ln -s "libcoot-AngleInfo.so.0.0.0" "libcoot-AngleInfo.so") libtool: link: ( cd ".libs" && rm -f "libcoot-AngleInfo.la" && ln -s "../libcoot-AngleInfo.la" "libcoot-AngleInfo.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' Making all in ccp4mg-utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o geomutil.lo geomutil.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mgtree.lo mgtree.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cartesian.lo cartesian.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o matrix.lo matrix.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o quat.lo quat.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ppmutil.lo ppmutil.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cartesian.cc -fPIC -DPIC -o .libs/cartesian.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mgtree.cc -fPIC -DPIC -o .libs/mgtree.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c geomutil.cc -fPIC -DPIC -o .libs/geomutil.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c matrix.cc -fPIC -DPIC -o .libs/matrix.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c quat.cc -fPIC -DPIC -o .libs/quat.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ppmutil.cc -fPIC -DPIC -o .libs/ppmutil.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libccp4mg-utils.la -rpath /usr/lib/aarch64-linux-gnu geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo -lpng16 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/geomutil.o .libs/mgtree.o .libs/cartesian.o .libs/matrix.o .libs/quat.o .libs/ppmutil.o -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4mg-utils.so.0 -o .libs/libccp4mg-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libccp4mg-utils.so.0" && ln -s "libccp4mg-utils.so.0.0.0" "libccp4mg-utils.so.0") libtool: link: (cd ".libs" && rm -f "libccp4mg-utils.so" && ln -s "libccp4mg-utils.so.0.0.0" "libccp4mg-utils.so") libtool: link: ( cd ".libs" && rm -f "libccp4mg-utils.la" && ln -s "../libccp4mg-utils.la" "libccp4mg-utils.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' Making all in db-main make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o db-main.lo db-main.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o db-strands.lo db-strands.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c db-main.cc -fPIC -DPIC -o .libs/db-main.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c db-strands.cc -fPIC -DPIC -o .libs/db-strands.o In file included from db-main.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from db-strands.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-db-main.la -rpath /usr/lib/aarch64-linux-gnu db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/db-main.o .libs/db-strands.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../mini-mol/.libs/libcoot-mini-mol.so ../lidia-core/.libs/libcoot-lidia-core.so ../coot-utils/.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-db-main.so.0 -o .libs/libcoot-db-main.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-db-main.so.0" && ln -s "libcoot-db-main.so.0.0.0" "libcoot-db-main.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-db-main.so" && ln -s "libcoot-db-main.so.0.0.0" "libcoot-db-main.so") libtool: link: ( cd ".libs" && rm -f "libcoot-db-main.la" && ln -s "../libcoot-db-main.la" "libcoot-db-main.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' Making all in analysis make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bfactan.o bfactan.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bfkurt.lo bfkurt.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mogul.lo mogul.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o kolmogorov.lo kolmogorov.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o stats.lo stats.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" 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"-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bfkurt.cc -fPIC -DPIC -o .libs/bfkurt.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mogul.cc -fPIC -DPIC -o .libs/mogul.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c kolmogorov.cc -fPIC -DPIC -o .libs/kolmogorov.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c typed-distances.cc -fPIC -DPIC -o .libs/typed-distances.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c stats.cc -fPIC -DPIC -o .libs/stats.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c daca.cc -fPIC -DPIC -o .libs/daca.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cablam.cc -fPIC -DPIC -o .libs/cablam.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c b-factor-histogram.cc -fPIC -DPIC -o .libs/b-factor-histogram.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rna-backbone.cc -fPIC -DPIC -o .libs/rna-backbone.o In file included from stats.cc:25: stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from kolmogorov.cc:25: stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from mogul.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from mogul.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from b-factor-histogram.cc:288: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from daca.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from rna-backbone.cc:31: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-analysis.la -rpath /usr/lib/aarch64-linux-gnu bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo b-factor-histogram.lo daca.lo rna-backbone.lo ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams libtool: link: g++ -fPIC -DPIC -shared -nostdlib 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/usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-analysis.so.0 -o .libs/libcoot-analysis.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-analysis.so.0" && ln -s "libcoot-analysis.so.0.0.0" "libcoot-analysis.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-analysis.so" && ln -s "libcoot-analysis.so.0.0.0" "libcoot-analysis.so") libtool: link: ( cd ".libs" && rm -f "libcoot-analysis.la" && ln -s "../libcoot-analysis.la" "libcoot-analysis.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-bfactan bfactan.o libcoot-analysis.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-bfactan bfactan.o ./.libs/libcoot-analysis.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' Making all in cootaneer make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o buccaneer-prot.lo buccaneer-prot.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time 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-DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cootaneer-sequence.lo cootaneer-sequence.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 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-DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c buccaneer-prot.cpp -fPIC -DPIC -o .libs/buccaneer-prot.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c buccaneer-sequence.cpp -fPIC -DPIC -o .libs/buccaneer-sequence.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootaneer.la -rpath /usr/lib/aarch64-linux-gnu buccaneer-lib.lo buccaneer-prot.lo buccaneer-sequence.lo cootaneer-sequence.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/buccaneer-lib.o .libs/buccaneer-prot.o .libs/buccaneer-sequence.o .libs/cootaneer-sequence.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcootaneer.so.0 -o .libs/libcootaneer.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcootaneer.so.0" && ln -s "libcootaneer.so.0.0.0" "libcootaneer.so.0") libtool: link: (cd ".libs" && rm -f "libcootaneer.so" && ln -s "libcootaneer.so.0.0.0" "libcootaneer.so") libtool: link: ( cd ".libs" && rm -f "libcootaneer.la" && ln -s "../libcootaneer.la" "libcootaneer.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' Making all in ideal make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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-DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mods.lo mods.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 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-DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pepflip.lo pepflip.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ng.cc -fPIC -DPIC -o .libs/ng.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-restraints.cc -fPIC -DPIC -o .libs/make-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mods.cc -fPIC -DPIC -o .libs/mods.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pepflip.cc -fPIC -DPIC -o .libs/pepflip.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-restraint.cc -fPIC -DPIC -o .libs/simple-restraint.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-squareds.cc -fPIC -DPIC -o .libs/chi-squareds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c distortion.cc -fPIC -DPIC -o .libs/distortion.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chirals.cc -fPIC -DPIC -o .libs/chirals.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flanking.cc -fPIC -DPIC -o .libs/flanking.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c extra-restraints.cc -fPIC -DPIC -o .libs/extra-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gradients.cc -fPIC -DPIC -o .libs/gradients.o In file included from mini-rsr.cc:56: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from mini-rsr.cc:58: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o regularize-minimol.lo regularize-minimol.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from chirals.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from distortion.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from make-restraints.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from gradients.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c regularize-minimol.cc -fPIC -DPIC -o .libs/regularize-minimol.o In file included from simple-restraint.hh:162, from flanking.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from ng.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:174, from mini-rsr.cc:60: zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from mini-rsr.cc:66: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from simple-restraint.hh:162, from simple-restraint.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from mods.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from extra-restraints.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from chi-squareds.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from chirals.cc:35: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.cc: In member function 'std::pair coot::simple_restraint::distortion(mmdb::Atom**, const double&) const': simple-restraint.cc:4068:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4068 | coot::simple_restraint::distortion(mmdb::PAtom *atoms, const double &lj_epsilon) const { | ^~~~~ In file included from simple-restraint.hh:162, from regularize-minimol.hh:25, from regularize-minimol.cc:22: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from mini-rsr.cc:41: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lograma.lo lograma.cpp ng.cc: In member function 'void coot::restraints_container_t::analyze_for_bad_restraints(coot::restraint_type_t, double)': ng.cc:2354:97: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2354 | std::pair distortion_pair = rest.distortion(atom, lennard_jones_epsilon); // 2nd arg is not used for bonds | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lograma.cpp -fPIC -DPIC -o .libs/lograma.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o process-dfs-in-range.lo process-dfs-in-range.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c process-dfs-in-range.cc -fPIC -DPIC -o .libs/process-dfs-in-range.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o extra-restraints-kk.lo extra-restraints-kk.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c extra-restraints-kk.cc -fPIC -DPIC -o .libs/extra-restraints-kk.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-restraint-kk.lo simple-restraint-kk.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-restraint-kk.cc -fPIC -DPIC -o .libs/simple-restraint-kk.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o torsion-bonds.lo torsion-bonds.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-compare-residues.lo coot-compare-residues.cc In file included from simple-restraint.hh:162, from process-dfs-in-range.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c torsion-bonds.cc -fPIC -DPIC -o .libs/torsion-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-compare-residues.cc -fPIC -DPIC -o .libs/coot-compare-residues.o In file included from simple-restraint.hh:162, from extra-restraints-kk.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o link-restraints.lo link-restraints.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c link-restraints.cc -fPIC -DPIC -o .libs/link-restraints.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o parallel-planes.lo parallel-planes.cc In file included from simple-restraint.hh:162, from torsion-bonds.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c parallel-planes.cc -fPIC -DPIC -o .libs/parallel-planes.o In file included from simple-restraint.hh:162, from simple-restraint-kk.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from coot-compare-residues.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from parallel-planes.cc:22: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pull-restraint.lo pull-restraint.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trans-peptide.lo trans-peptide.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pull-restraint.cc -fPIC -DPIC -o .libs/pull-restraint.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trans-peptide.cc -fPIC -DPIC -o .libs/trans-peptide.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o model-bond-deltas.lo model-bond-deltas.cc In file included from simple-restraint.hh:162, from link-restraints.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o write-png.lo write-png.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c model-bond-deltas.cc -fPIC -DPIC -o .libs/model-bond-deltas.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o zo-rama.lo zo-rama.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o crankshaft.lo crankshaft.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c write-png.cc -fPIC -DPIC -o .libs/write-png.o simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c zo-rama.cc -fPIC -DPIC -o .libs/zo-rama.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi.lo phi-psi.cc In file included from parallel-planes.cc:23: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c crankshaft.cc -fPIC -DPIC -o .libs/crankshaft.o In file included from zo-rama.hh:42, from write-png.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi.cc -fPIC -DPIC -o .libs/phi-psi.o In file included from simple-restraint.hh:162, from pull-restraint.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o neutron.lo neutron.cc In file included from zo-rama.hh:42, from zo-rama.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lv.o lv.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c neutron.cc -fPIC -DPIC -o .libs/neutron.o simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from model-bond-deltas.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from trans-peptide.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from lv.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from zo-rama.hh:42, from crankshaft.hh:37, from crankshaft.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from model-bond-deltas.cc:29: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from crankshaft.cc:36: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from crankshaft.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1393:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1393 | const zo::rama_table_set &zorts) const { | ^~~~~ In file included from simple-restraint.hh:162, from neutron.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from lv.cc:29: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': crankshaft.cc:871:71: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 871 | std::pair grads = zorts.df(pp, rt); | ^ crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': crankshaft.cc:833:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 833 | coot::crankshaft::optimize_a_triple::df(const gsl_vector *v, | ^~~~ crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-ideal.la -rpath /usr/lib/aarch64-linux-gnu simple-restraint.lo make-restraints.lo ng.lo chi-squareds.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo process-dfs-in-range.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo pull-restraint.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo neutron.lo ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpng16 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/simple-restraint.o .libs/make-restraints.o .libs/ng.o .libs/chi-squareds.o .libs/mods.o .libs/distortion.o .libs/chirals.o .libs/flanking.o .libs/gradients.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/process-dfs-in-range.o .libs/extra-restraints-kk.o .libs/simple-restraint-kk.o .libs/torsion-bonds.o .libs/coot-compare-residues.o .libs/link-restraints.o .libs/parallel-planes.o .libs/pull-restraint.o .libs/trans-peptide.o .libs/model-bond-deltas.o .libs/write-png.o .libs/zo-rama.o .libs/crankshaft.o .libs/phi-psi.o .libs/neutron.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -lpthread ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-ideal.so.0 -o .libs/libcoot-ideal.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-ideal.so.0" && ln -s "libcoot-ideal.so.0.0.0" "libcoot-ideal.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-ideal.so" && ln -s "libcoot-ideal.so.0.0.0" "libcoot-ideal.so") libtool: link: ( cd ".libs" && rm -f "libcoot-ideal.la" && ln -s "../libcoot-ideal.la" "libcoot-ideal.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o mini-rsr-bin mini-rsr.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -lpthread /bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o coot-ligand-validation-bin lv.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lpthread libtool: link: g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/mini-rsr-bin mini-rsr.o ./.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread libtool: link: g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-ligand-validation-bin lv.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 ./.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so -lpthread make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' Making all in ligand make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' g++ 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../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rigid-body.lo rigid-body.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand-extras.cc -fPIC -DPIC -o .libs/ligand-extras.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand.cc -fPIC -DPIC -o .libs/ligand.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c wiggly-ligand.cc -fPIC -DPIC -o .libs/wiggly-ligand.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c monomer-utils.cc -fPIC -DPIC -o .libs/monomer-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue_by_phi_psi.cc -fPIC -DPIC -o .libs/residue_by_phi_psi.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dunbrack.cc -fPIC -DPIC -o .libs/dunbrack.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fast-ss-search.cc -fPIC -DPIC -o .libs/fast-ss-search.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rigid-body.cc -fPIC -DPIC -o .libs/rigid-body.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-angles-autogen.cc -fPIC -DPIC -o .libs/chi-angles-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c helix-placement.cc -fPIC -DPIC -o .libs/helix-placement.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-angles.cc -fPIC -DPIC -o .libs/chi-angles.o In file included from find-ligand.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from dunbrack.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from ligand.cc:60: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ligand-extras.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from rigid-body.hh:25, from rigid-body.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../mini-mol/mini-mol-utils.hh:22, from fast-ss-search.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from ligand.cc:69: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from ligand.cc:72: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from chi-angles.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ligand-extras.cc: In member function 'std::pair coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager*) const': ligand-extras.cc:176:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 176 | coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager *mol) const { | ^~~~~ In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, from residue_by_phi_psi.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, from helix-placement.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ideal-rna.lo ideal-rna.cc In file included from ../ideal/simple-restraint.hh:162, from ../ideal/regularize-minimol.hh:25, from wiggly-ligand.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ideal-rna.cc -fPIC -DPIC -o .libs/ideal-rna.o ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from ligand.cc:55: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o richardson-rotamers.lo richardson-rotamers.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c richardson-rotamers.cc -fPIC -DPIC -o .libs/richardson-rotamers.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o richardson-rotamer.lo richardson-rotamer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c richardson-rotamer.cc -fPIC -DPIC -o .libs/richardson-rotamer.o In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from residue_by_phi_psi.cc:22: In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t<((bool)std::__and_, std::is_move_assignable<_T2> >::value), std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::residue_by_phi_psi::connecting_atoms_t& coot::residue_by_phi_psi::connecting_atoms_t::operator=(coot::residue_by_phi_psi::connecting_atoms_t&&)' at residue_by_phi_psi.hh:46:13, inlined from 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const' at residue_by_phi_psi.cc:682:73: /usr/include/c++/14/bits/stl_pair.h:938:9: warning: '.coot::residue_by_phi_psi::connecting_atoms_t::upstream_C.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 938 | second = std::forward(__p.second); | ^~~~~~ residue_by_phi_psi.cc: In member function 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const': residue_by_phi_psi.cc:682:80: note: '' declared here 682 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t<((bool)std::__and_, std::is_move_assignable<_T2> >::value), std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::residue_by_phi_psi::connecting_atoms_t& coot::residue_by_phi_psi::connecting_atoms_t::operator=(coot::residue_by_phi_psi::connecting_atoms_t&&)' at residue_by_phi_psi.hh:46:13, inlined from 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const' at residue_by_phi_psi.cc:682:73: /usr/include/c++/14/bits/stl_pair.h:938:9: warning: '.coot::residue_by_phi_psi::connecting_atoms_t::downstream_N.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 938 | second = std::forward(__p.second); | ^~~~~~ residue_by_phi_psi.cc: In member function 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const': residue_by_phi_psi.cc:682:80: note: '' declared here 682 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rotamer.lo rotamer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer.cc -fPIC -DPIC -o .libs/rotamer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o torsion-general.lo torsion-general.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rotamer-tables.lo rotamer-tables.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o primitive-chi-angles.lo primitive-chi-angles.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c torsion-general.cc -fPIC -DPIC -o .libs/torsion-general.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer-tables.cc -fPIC -DPIC -o .libs/rotamer-tables.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c primitive-chi-angles.cc -fPIC -DPIC -o .libs/primitive-chi-angles.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dipole.lo dipole.cc In file included from rotamer.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dipole.cc -fPIC -DPIC -o .libs/dipole.o In file included from dipole.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from rotamer-tables.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o base-pairing.lo base-pairing.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o backrub-rotamer.lo backrub-rotamer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 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-DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trace.lo trace.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c backrub-rotamer.cc -fPIC -DPIC -o .libs/backrub-rotamer.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trace.cc -fPIC -DPIC -o .libs/trace.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trace-2.lo trace-2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trace-2.cc -fPIC -DPIC -o .libs/trace-2.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o multi-peptide.lo multi-peptide.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligands-db.lo ligands-db.cc In file included from backrub-rotamer.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from multi-peptide.hh:32, from trace.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c multi-peptide.cc -fPIC -DPIC -o .libs/multi-peptide.o In file included from ../mini-mol/mini-mol.hh:29, from trace.hh:29, from trace-2.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligands-db.cc -fPIC -DPIC -o .libs/ligands-db.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o joining-residues.lo joining-residues.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand-score-card.lo ligand-score-card.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c joining-residues.cc -fPIC -DPIC -o .libs/joining-residues.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand-score-card.cc -fPIC -DPIC -o .libs/ligand-score-card.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o side-chain-densities.lo side-chain-densities.cc In file included from ligands-db.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ backrub-rotamer.cc: In function 'std::pair > coot::get_clash_score(const minimol::molecule&, atom_selection_container_t, int)': backrub-rotamer.cc:596:76: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 596 | std::pair rotamer_info = a_rotamer.get_pos(); | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c side-chain-densities.cc -fPIC -DPIC -o .libs/side-chain-densities.o In file included from ../mini-mol/mini-mol.hh:29, from ligand-score-card.hh:31, from ligand-score-card.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o tube-finder.lo tube-finder.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o smith-waterman.lo smith-waterman.cc trace.cc: In constructor 'coot::trace::trace(const clipper::Xmap&)': trace.cc:53:61: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 53 | std::pair mv = util::mean_and_variance(xmap); | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c tube-finder.cc -fPIC -DPIC -o .libs/tube-finder.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o side-chain.lo side-chain.cc In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, from joining-residues.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c smith-waterman.cc -fPIC -DPIC -o .libs/smith-waterman.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c side-chain.cc -fPIC -DPIC -o .libs/side-chain.o In file included from tube-finder.cc:30: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o refine-isolated-chain.lo refine-isolated-chain.cc In file included from ../ideal/simple-restraint.hh:162, from multi-peptide.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from smith-waterman.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c refine-isolated-chain.cc -fPIC -DPIC -o .libs/refine-isolated-chain.o In file included from side-chain-densities.cc:38: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from side-chain.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ tube-finder.cc: In constructor 'coot::tube_finder_t::tube_finder_t(const clipper::Xmap&)': tube-finder.cc:45:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mv = util::mean_and_variance(blurred_xmap); | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from multi-peptide.cc:32: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': side-chain-densities.cc:1293:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~~ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o find-waters.o find-waters.cc In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from find-waters.cc:45: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-ligands-db.o make-ligands-db.cc In file included from ../ideal/simple-restraint.hh:162, from refine-isolated-chain.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o identify-protein.o identify-protein.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libres-tracer.lo libres-tracer.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-rsr-extend-fragments.lo rama-rsr-extend-fragments.cc ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /usr/include/clipper/core/cell.h:50, from /usr/include/clipper/core/coords.h:49, from /usr/include/clipper/core/fftmap.h:49, from /usr/include/clipper/core/xmap.h:49, from multi-peptide.hh:30: In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:228:34: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][0]' may be used uninitialized [-Wmaybe-uninitialized] 228 | { return Vec3( m(0,0)*v[0]+m(0,1)*v[1]+m(0,2)*v[2], | ~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][0]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:228:46: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][2]' may be used uninitialized [-Wmaybe-uninitialized] 228 | { return Vec3( m(0,0)*v[0]+m(0,1)*v[1]+m(0,2)*v[2], | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:228:41: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][1]' may be used uninitialized [-Wmaybe-uninitialized] 228 | { return Vec3( m(0,0)*v[0]+m(0,1)*v[1]+m(0,2)*v[2], | ~~~~~~^~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][1]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:230:46: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][2]' may be used uninitialized [-Wmaybe-uninitialized] 230 | m(2,0)*v[0]+m(2,1)*v[1]+m(2,2)*v[2] ); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:229:34: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][0]' may be used uninitialized [-Wmaybe-uninitialized] 229 | m(1,0)*v[0]+m(1,1)*v[1]+m(1,2)*v[2], | ~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][0]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:229:46: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][2]' may be used uninitialized [-Wmaybe-uninitialized] 229 | m(1,0)*v[0]+m(1,1)*v[1]+m(1,2)*v[2], | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:229:41: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][1]' may be used uninitialized [-Wmaybe-uninitialized] 229 | m(1,0)*v[0]+m(1,1)*v[1]+m(1,2)*v[2], | ~~~~~~^~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][1]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:230:41: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][1]' may be used uninitialized [-Wmaybe-uninitialized] 230 | m(2,0)*v[0]+m(2,1)*v[1]+m(2,2)*v[2] ); } | ~~~~~~^~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][1]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:230:34: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][0]' may be used uninitialized [-Wmaybe-uninitialized] 230 | m(2,0)*v[0]+m(2,1)*v[1]+m(2,2)*v[2] ); } | ~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][0]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator+(const Vec3&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:128, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:171:110: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[0]' may be used uninitialized [-Wmaybe-uninitialized] 171 | template inline Vec3 operator +( const Vec3& v1, const Vec3 &v2 ) { return Vec3( v1[0]+v2[0], v1[1]+v2[1], v1[2]+v2[2]); } | ~~~~~^~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[0]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator+(const Vec3&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:128, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:171:123: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[1]' may be used uninitialized [-Wmaybe-uninitialized] 171 | template inline Vec3 operator +( const Vec3& v1, const Vec3 &v2 ) { return Vec3( v1[0]+v2[0], v1[1]+v2[1], v1[2]+v2[2]); } | ~~~~~^~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[1]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator+(const Vec3&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:128, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:171:136: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[2]' may be used uninitialized [-Wmaybe-uninitialized] 171 | template inline Vec3 operator +( const Vec3& v1, const Vec3 &v2 ) { return Vec3( v1[0]+v2[0], v1[1]+v2[1], v1[2]+v2[2]); } | ~~~~~^~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': side-chain-densities.cc:2408:64: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2408 | std::pair mi = s.median_and_iqr(); | ^ multi-peptide.cc: In function 'coot::minimol::fragment coot::multi_build_N_terminal_ALA(mmdb::Residue*, mmdb::Residue*, const std::string&, float, int, const protein_geometry&, const clipper::Xmap&, std::pair, bool)': multi-peptide.cc:701:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 701 | coot::multi_build_N_terminal_ALA(mmdb::Residue *res_p, | ^~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c libres-tracer.cc -fPIC -DPIC -o .libs/libres-tracer.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-rsr-extend-fragments.cc -fPIC -DPIC -o .libs/rama-rsr-extend-fragments.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o new-residue-by-3-phi-psi.lo new-residue-by-3-phi-psi.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c new-residue-by-3-phi-psi.cc -fPIC -DPIC -o .libs/new-residue-by-3-phi-psi.o In file included from identify-protein.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o dSFMT.lo dSFMT.c In file included from ../mini-mol/mini-mol.hh:29, from libres-tracer.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c dSFMT.c -fPIC -DPIC -o .libs/dSFMT.o In file included from ../coot-utils/coot-map-utils.hh:33, from rama-rsr-extend-fragments.cc:28: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from new-residue-by-3-phi-psi.cc:29: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from libres-tracer.cc:46: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libres-tracer.cc: In lambda function: libres-tracer.cc:1932:77: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1932 | return std::make_pair(sum_forward, sum_backward); | ^ side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': side-chain-densities.cc:1293:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~ In file included from rama-rsr-extend-fragments.cc:32: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libres-tracer.cc: In function 'std::vector > make_spin_scored_pairs(const std::vector >&, unsigned int, const clipper::Xmap&, mmdb::Manager*, mmdb::Atom**, int)': libres-tracer.cc:496:67: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 496 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ libres-tracer.cc: In lambda function: libres-tracer.cc:1940:89: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1940 | std::pair score = get_tree_scores(tree); | ^ side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': side-chain-densities.cc:2302:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2302 | coot::side_chain_densities::combine_directory(const std::string &rot_dir, int n_steps, | ^~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/string:51, from /usr/include/c++/14/stdexcept:39, from ../coot-utils/coot-coord-utils.hh:26, from new-residue-by-3-phi-psi.cc:28: In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t<((bool)std::__and_, std::is_move_assignable<_T2> >::value), std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t& coot::new_residue_by_3_phi_psi::connecting_atoms_t::operator=(coot::new_residue_by_3_phi_psi::connecting_atoms_t&&)' at new-residue-by-3-phi-psi.hh:54:13, inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const' at new-residue-by-3-phi-psi.cc:127:80: /usr/include/c++/14/bits/stl_pair.h:938:9: warning: '.coot::new_residue_by_3_phi_psi::connecting_atoms_t::upstream_C.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 938 | second = std::forward(__p.second); | ^~~~~~ new-residue-by-3-phi-psi.cc: In member function 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const': new-residue-by-3-phi-psi.cc:127:80: note: '' declared here 127 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t<((bool)std::__and_, std::is_move_assignable<_T2> >::value), std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t& coot::new_residue_by_3_phi_psi::connecting_atoms_t::operator=(coot::new_residue_by_3_phi_psi::connecting_atoms_t&&)' at new-residue-by-3-phi-psi.hh:54:13, inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const' at new-residue-by-3-phi-psi.cc:127:80: /usr/include/c++/14/bits/stl_pair.h:938:9: warning: '.coot::new_residue_by_3_phi_psi::connecting_atoms_t::downstream_N.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 938 | second = std::forward(__p.second); | ^~~~~~ new-residue-by-3-phi-psi.cc: In member function 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const': new-residue-by-3-phi-psi.cc:127:80: note: '' declared here 127 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-ligand.la -rpath /usr/lib/aarch64-linux-gnu ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo joining-residues.lo ligand-score-card.lo side-chain-densities.lo tube-finder.lo smith-waterman.lo side-chain.lo refine-isolated-chain.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/trace.o .libs/trace-2.o .libs/multi-peptide.o .libs/ligands-db.o .libs/joining-residues.o .libs/ligand-score-card.o .libs/side-chain-densities.o .libs/tube-finder.o .libs/smith-waterman.o .libs/side-chain.o .libs/refine-isolated-chain.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../analysis/.libs/libcoot-analysis.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-ligand.so.0 -o .libs/libcoot-ligand.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-ligand.so.0" && ln -s "libcoot-ligand.so.0.0.0" "libcoot-ligand.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-ligand.so" && ln -s "libcoot-ligand.so.0.0.0" "libcoot-ligand.so") libtool: link: ( cd ".libs" && rm -f "libcoot-ligand.la" && ln -s "../libcoot-ligand.la" "libcoot-ligand.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-findligand-bin find-ligand.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../db-main/libcoot-db-main.la ../cootaneer/libcootaneer.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-findwaters-bin find-waters.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../ccp4mg-utils/libccp4mg-utils.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-make-ligands-db make-ligands-db.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../cootaneer/libcootaneer.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-identify-protein-bin identify-protein.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libres-tracer.cc: In function 'std::vector > make_spin_scored_pairs(const std::vector >&, unsigned int, const clipper::Xmap&, mmdb::Manager*, mmdb::Atom**, int)': libres-tracer.cc:481:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 481 | make_spin_scored_pairs(const std::vector > &atom_pairs_within_distance, | ^~~~~~~~~~~~~~~~~~~~~~ libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-identify-protein-bin identify-protein.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-findwaters-bin find-waters.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-make-ligands-db make-ligands-db.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../cootaneer/.libs/libcootaneer.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-findligand-bin find-ligand.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../db-main/.libs/libcoot-db-main.so ../cootaneer/.libs/libcootaneer.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-res-tracer.la -rpath /usr/lib/aarch64-linux-gnu libres-tracer.lo rama-rsr-extend-fragments.lo new-residue-by-3-phi-psi.lo dSFMT.lo libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libres-tracer.o .libs/rama-rsr-extend-fragments.o .libs/new-residue-by-3-phi-psi.o .libs/dSFMT.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-res-tracer.so.0 -o .libs/libcoot-res-tracer.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-res-tracer.so.0" && ln -s "libcoot-res-tracer.so.0.0.0" "libcoot-res-tracer.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-res-tracer.so" && ln -s "libcoot-res-tracer.so.0.0.0" "libcoot-res-tracer.so") libtool: link: ( cd ".libs" && rm -f "libcoot-res-tracer.la" && ln -s "../libcoot-res-tracer.la" "libcoot-res-tracer.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' Making all in coords make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Bond_lines.lo Bond_lines.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 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-DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phenix-geo-bonds.cc -fPIC -DPIC -o .libs/phenix-geo-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Bond_lines_ext.cc -fPIC -DPIC -o .libs/Bond_lines_ext.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmdb-extras.cc -fPIC -DPIC -o .libs/mmdb-extras.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cos-sin.cc -fPIC -DPIC -o .libs/cos-sin.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c utils.cc -fPIC -DPIC -o .libs/utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-close.cc -fPIC -DPIC -o .libs/coot-close.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmdb.cc -fPIC -DPIC -o .libs/mmdb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer-markup.cc -fPIC -DPIC -o .libs/rotamer-markup.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmdb-crystal.cc -fPIC -DPIC -o .libs/mmdb-crystal.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phenix-geo.cc -fPIC -DPIC -o .libs/phenix-geo.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o loop-path.lo loop-path.cc In file included from phenix-geo.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c loop-path.cc -fPIC -DPIC -o .libs/loop-path.o In file included from rotamer-markup.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-plot-phi-psi.lo rama-plot-phi-psi.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi-prob.lo phi-psi-prob.cc In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from phenix-geo-bonds.cc:25: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from Bond_lines.cc:36: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from Bond_lines.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from mmdb-crystal.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o In file included from mmdb-crystal.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi-prob.cc -fPIC -DPIC -o .libs/phi-psi-prob.o In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from mmdb-extras.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ramachandran-validation.lo ramachandran-validation.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ramachandran-validation.cc -fPIC -DPIC -o .libs/ramachandran-validation.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from mmdb.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from mmdb.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coords.la -rpath /usr/lib/aarch64-linux-gnu Bond_lines.lo Cartesian.lo cos-sin.lo phenix-geo-bonds.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo rotamer-markup.lo loop-path.lo rama-plot-phi-psi.lo phi-psi-prob.lo ramachandran-validation.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../cootaneer/libcootaneer.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/phenix-geo-bonds.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/phenix-geo.o .libs/rotamer-markup.o .libs/loop-path.o .libs/rama-plot-phi-psi.o .libs/phi-psi-prob.o .libs/ramachandran-validation.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../ligand/.libs/libcoot-ligand.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../cootaneer/.libs/libcootaneer.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-coords.so.0 -o .libs/libcoot-coords.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-coords.so.0" && ln -s "libcoot-coords.so.0.0.0" "libcoot-coords.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coords.so" && ln -s "libcoot-coords.so.0.0.0" "libcoot-coords.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coords.la" && ln -s "../libcoot-coords.la" "libcoot-coords.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' Making all in density-contour make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Vectors.lo Vectors.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CIsoSurface.lo CIsoSurface.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gaussian-surface.lo gaussian-surface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CIsoSurface.cpp -fPIC -DPIC -o .libs/CIsoSurface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Vectors.cpp -fPIC -DPIC -o .libs/Vectors.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c occlusion.cc -fPIC -DPIC -o .libs/occlusion.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c density-contour-triangles.cc -fPIC -DPIC -o .libs/density-contour-triangles.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gaussian-surface.cc -fPIC -DPIC -o .libs/gaussian-surface.o In file included from ../coot-utils/coot-map-utils.hh:33, from density-contour-triangles.cc:155: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from CIsoSurface.cpp:1244: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from gaussian-surface.cc:36: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ CIsoSurface.cpp: In member function 'coot::CartesianPairInfo CIsoSurface::GenerateSurface_from_NXmap(const clipper::NXmap&, T, float, coot::Cartesian, int) [with T = float]': CIsoSurface.cpp:786:24: warning: 'grid_min' may be used uninitialized [-Wmaybe-uninitialized] 786 | clipper::Grid_range grid(grid_min, grid_max); | ^~~~ In file included from ../coords/Cartesian.h:31, from CIsoSurface.h:44, from CIsoSurface.cpp:55: /usr/include/clipper/core/coords.h:590:5: note: by argument 2 of type 'const clipper::Coord_grid&' to 'clipper::Grid_range::Grid_range(const clipper::Coord_grid&, const clipper::Coord_grid&)' declared here 590 | Grid_range( const Coord_grid& min, const Coord_grid& max ); | ^~~~~~~~~~ CIsoSurface.cpp:784:24: note: 'grid_min' declared here 784 | clipper::Coord_grid grid_min; | ^~~~~~~~ CIsoSurface.cpp:786:24: warning: 'grid_max' may be used uninitialized [-Wmaybe-uninitialized] 786 | clipper::Grid_range grid(grid_min, grid_max); | ^~~~ /usr/include/clipper/core/coords.h:590:5: note: by argument 3 of type 'const clipper::Coord_grid&' to 'clipper::Grid_range::Grid_range(const clipper::Coord_grid&, const clipper::Coord_grid&)' declared here 590 | Grid_range( const Coord_grid& min, const Coord_grid& max ); | ^~~~~~~~~~ CIsoSurface.cpp:785:24: note: 'grid_max' declared here 785 | clipper::Coord_grid grid_max; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-isosurface.la -rpath /usr/lib/aarch64-linux-gnu Vectors.lo CIsoSurface.lo density-contour-triangles.lo occlusion.lo gaussian-surface.lo ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o .libs/occlusion.o .libs/gaussian-surface.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs ../coords/.libs/libcoot-coords.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib 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'/build/reproducible-path/coot-1.1.09+dfsg/skeleton' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dm-utils.lo dm-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphical_skel.lo graphical_skel.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o BuildCas.lo BuildCas.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dm-utils.cc -fPIC -DPIC -o .libs/dm-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphical_skel.cc -fPIC -DPIC -o .libs/graphical_skel.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BuildCas.cc -fPIC -DPIC -o .libs/BuildCas.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-skeleton.la -rpath /usr/lib/aarch64-linux-gnu dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/angles/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs ../angles/.libs/libcoot-AngleInfo.so ../ideal/.libs/libcoot-ideal.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-skeleton.so.0 -o .libs/libcoot-skeleton.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-skeleton.so.0" && ln -s "libcoot-skeleton.so.0.0.0" "libcoot-skeleton.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-skeleton.so" && ln -s "libcoot-skeleton.so.0.0.0" "libcoot-skeleton.so") libtool: link: ( cd ".libs" && rm -f "libcoot-skeleton.la" && ln -s "../libcoot-skeleton.la" "libcoot-skeleton.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' Making all in high-res make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" 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-DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o residue-distortions.lo residue-distortions.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sequence-assignment.lo sequence-assignment.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-distortions.cc -fPIC -DPIC -o .libs/residue-distortions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c high-res.cc -fPIC -DPIC -o .libs/high-res.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-atom-graph.cc -fPIC -DPIC -o .libs/coot-atom-graph.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-assignment.cc -fPIC -DPIC -o .libs/sequence-assignment.o In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from residue-distortions.cc:21: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from coot-atom-graph.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from sequence-assignment.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from high-res.cc:24: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from high-res.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-high-res.la -rpath /usr/lib/aarch64-linux-gnu high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o 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'/build/reproducible-path/coot-1.1.09+dfsg/build' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall 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-s "../libcoot-cabuild.la" "libcoot-cabuild.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/build' Making all in MoleculesToTriangles make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making all in CXXSurface make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSurface.lo CXXSurface.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSurfaceVertex.lo CXXSurfaceVertex.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXTorusElement.lo CXXTorusElement.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCircleNode.cpp -fPIC -DPIC -o .libs/CXXCircleNode.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXNewHood.cpp -fPIC -DPIC -o .libs/CXXNewHood.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCoord.cpp -fPIC -DPIC -o .libs/CXXCoord.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereTriangleEdge.cpp -fPIC -DPIC -o .libs/CXXSphereTriangleEdge.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXFortranFile.cpp -fPIC -DPIC -o .libs/CXXFortranFile.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCircle.cpp -fPIC -DPIC -o .libs/CXXCircle.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereTriangle.cpp -fPIC -DPIC -o .libs/CXXSphereTriangle.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereElement.cpp -fPIC -DPIC -o .libs/CXXSphereElement.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurface.cpp -fPIC -DPIC -o .libs/CXXSurface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereNode.cpp -fPIC -DPIC -o .libs/CXXSphereNode.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurfaceVertex.cpp -fPIC -DPIC -o .libs/CXXSurfaceVertex.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXTorusElement.cpp -fPIC -DPIC -o .libs/CXXTorusElement.o In file included from CXXSurfaceVertex.h:26, from CXXCircleNode.cpp:24: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSphereNode.h:30, from CXXSphereNode.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXCircle.cpp:26: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSphereTriangle.h:28, from CXXSphereTriangle.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXNewHood.cpp:27: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXCoord.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXSphereElement.cpp:26: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ In file included from CXXSurfaceVertex.h:26, from CXXTriangle.h:27, from CXXSurface.h:39, from CXXSurface.cpp:29: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXTorusElement.cpp:26: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXTorusNode.lo CXXTorusNode.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXTriangle.lo CXXTriangle.cpp CXXCircleNode.cpp: In static member function 'static int CXXCircleNode::probeContacts(std::vector&, double, std::map >&)': CXXCircleNode.cpp:176:59: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<__gnu_cxx::__normal_iterator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 176 | for (int iCentralProbe = 0; iCentralProbe < centralBin.size(); iCentralProbe++){ | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ CXXFortranFile.cpp: In member function 'size_t CXXFortranFile::getFortranData(char*, size_t, size_t, int)': CXXFortranFile.cpp:192:20: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 192 | for (int i=0; i() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' CXXSurface.cpp: In member function 'int CXXSurface::readGraspFile(std::string)': CXXSurface.cpp:155:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 155 | for (int i=0; i&, mmdb::Manager*, int)': CXXSurface.cpp:497:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 497 | for (int i=0; i< nVerts; i++){ | ~^~~~~~~~ CXXSurface.cpp: In member function 'size_t CXXSurface::updateWithVectorData(size_t, std::string, size_t, double*)': CXXSurface.cpp:585:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 585 | if (int(vertices.size()) < start + count){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ CXXSurface.cpp: In member function 'size_t CXXSurface::updateWithPointerData(size_t, std::string, size_t, void**)': CXXSurface.cpp:599:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 599 | if (int(vertices.size()) < start + count){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ CXXSurface.cpp: In member function 'size_t CXXSurface::setCoord(const std::string&, size_t, const CXXCoord&)': CXXSurface.cpp:817:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 817 | if (int(vertices.size()) <= iVertex){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ CXXSurface.cpp: In member function 'int CXXSurface::getCoord(size_t, size_t, double*)': CXXSurface.cpp:950:14: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] 950 | if (type <= int(vectors.size())){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from CXXSurfaceVertex.h:26, from CXXSurfaceVertex.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXSurface.cpp: In member function 'void CXXSurface::compress(double)': CXXSurface.cpp:1013:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1013 | for (int i=0; i' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' CXXSurface.cpp:1015:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1015 | for (int j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1031 | for (int i=0; i&)': CXXSphereElement.cpp:673:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 673 | for (int i=0; i() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXQADSurfaceStaticData.cpp -fPIC -DPIC -o .libs/CXXQADSurfaceStaticData.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXFFTSolventMap.lo CXXFFTSolventMap.cpp In file included from CXXTorusNode.h:27, from CXXTorusNode.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCreator.cpp -fPIC -DPIC -o .libs/CXXCreator.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSpace.cpp -fPIC -DPIC -o .libs/CXXSpace.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXChargeTable.lo CXXChargeTable.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXException.lo CXXException.cpp CXXCreator.cpp:803:2: warning: #warning Compiling for OMP [-Wcpp] 803 | #warning Compiling for OMP | ^~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXFFTSolventMap.cpp -fPIC -DPIC -o .libs/CXXFFTSolventMap.o In file included from CXXSurfaceVertex.h:26, from CXXQADSurfaceStaticData.cpp:24: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXUtils.lo CXXUtils.cpp In file included from CXXSurfaceVertex.h:26, from CXXQADSurface.cpp:24: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXBall.lo CXXBall.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSurfaceMaker.lo CXXSurfaceMaker.cpp In file included from CXXCreator.h:41, from CXXCreator.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSpace.h:25, from CXXSpace.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXChargeTable.cpp -fPIC -DPIC -o .libs/CXXChargeTable.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXException.cpp -fPIC -DPIC -o .libs/CXXException.o CXXSpace.cpp: In constructor 'CXXSpace::CXXSpace(float, float, float, float, float, float, float, float)': CXXSpace.cpp:51:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 51 | if (chargeGrid == 0 | potentialGrid == 0 | dielGrid == 0) { | ~~~~~~~~~~~^~~~ CXXSpace.cpp:51:104: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 51 | if (chargeGrid == 0 | potentialGrid == 0 | dielGrid == 0) { | ~~~~~~~~~^~~~ CXXSpace.cpp: In member function 'double CXXSpace::getGridCharge(int, int, int)': CXXSpace.cpp:184:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:184:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:184:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:184:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:184:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getGridSolvationParameter(int, int, int)': CXXSpace.cpp:203:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:203:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:203:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:203:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:203:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getEpsilonKappaSq(int, int, int)': CXXSpace.cpp:222:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:222:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:222:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:222:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:222:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getPotential(int, int, int)': CXXSpace.cpp:240:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:240:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:240:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:240:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:240:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getBoundaryMap(int, int, int)': CXXSpace.cpp:261:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:261:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:261:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:261:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:261:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'int CXXSpace::dumpSpaceSlice(int, int, int)': CXXSpace.cpp:507:23: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 507 | if (dimension > 2 | dimension < 0) { | ~~~~~~~~~~^~~ CXXSpace.cpp:531:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 531 | if (j == (dim[1]-1)) | ^~ CXXSpace.cpp:533:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 533 | break; | ^~~~~ CXXSpace.cpp:538:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 538 | if (j == (dim[1]-1)) | ^~ CXXSpace.cpp:541:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 541 | break; | ^~~~~ CXXSpace.cpp:578:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 578 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:581:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 581 | break; | ^~~~~ CXXSpace.cpp:586:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 586 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:590:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 590 | break; | ^~~~~ CXXSpace.cpp:620:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 620 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:623:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 623 | break; | ^~~~~ CXXSpace.cpp:628:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 628 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:631:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 631 | break; | ^~~~~ CXXFFTSolventMap.cpp: In constructor 'SolventMap::SolventMap(fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real)': CXXFFTSolventMap.cpp:32:25: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 32 | if (probeRadius < 0 | gridSpacing < 0) { | ~~~~~~~~~~~~^~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXUtils.cpp -fPIC -DPIC -o .libs/CXXUtils.o CXXFFTSolventMap.cpp: In member function 'int SolventMap::convoluteSolidProbe(fftw_real, int, int, float)': CXXFFTSolventMap.cpp:361:22: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { | ~~~~~~~~~^~~~ CXXFFTSolventMap.cpp:361:59: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { | ~~~~~~~~~~~~~~~^~~~ CXXFFTSolventMap.cpp:361:72: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { | ~~~~~~^~~~ CXXFFTSolventMap.cpp: In member function 'int SolventMap::dumpXSlice(int, int, int)': CXXFFTSolventMap.cpp:743:21: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 743 | if (SliceNr > dim[0] | SliceNr < 1) { | ~~~~~~~~^~~~~~~~ CXXCreator.cpp: In member function 'int CXXCreator::distributeAtomCharge(CXXCoord, CXXCoord, CXXCoord, CXXCoord, int)': CXXCreator.cpp:261:28: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:261:78: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:289:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 289 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~~ CXXCreator.cpp:289:38: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 289 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~ CXXCreator.cpp:311:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 311 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:311:68: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 311 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp: In member function 'double CXXCreator::getGridVolumeOfAtom(CXXCoord, CXXCoord, CXXCoord, CXXCoord, int)': CXXCreator.cpp:389:28: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 389 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:389:78: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 389 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:414:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 414 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~~ CXXCreator.cpp:414:38: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 414 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~ CXXCreator.cpp:433:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 433 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:433:68: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 433 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp: In member function 'int CXXCreator::evolve(int, double)': CXXCreator.cpp:789:34: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 789 | for (size_t i = 0; i < space->getDimI(); i++) { | ~~^~~~~~~~~~~~~~~~~~ CXXCreator.cpp:793:35: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 793 | for (size_t j=0; jgetDimJ(); j++) largestChangeOfRow[j]=-1e30; | ~^~~~~~~~~~~~~~~~~ CXXCreator.cpp:796:35: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 796 | for (size_t j=0; jgetDimJ(); j++) largestPotentialOfRow[j]=-1e30; | ~^~~~~~~~~~~~~~~~~ CXXCreator.cpp:804:38: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 804 | for (size_t j = 0; j < passableSpace->getDimJ(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:809:42: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 809 | for (size_t k = 0; k < passableSpace->getDimK(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:812:41: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 812 | if (((i+j+k)%2) == (n%2)) { | ~~~~~~~~~~~~^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXBall.cpp -fPIC -DPIC -o .libs/CXXBall.o CXXQADSurface.cpp: In member function 'int CXXQADSurface::contourMap(double)': CXXQADSurface.cpp:599:75: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 599 | iCompare >=compareStart && !iEquivalent; | ~~~~~~~~~^~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurfaceMaker.cpp -fPIC -DPIC -o .libs/CXXSurfaceMaker.o CXXBall.cpp:87:2: warning: #warning Compiling for OMP [-Wcpp] 87 | #warning Compiling for OMP | ^~~~~~~ CXXBall.cpp:157:2: warning: #warning Compiling for OMP [-Wcpp] 157 | #warning Compiling for OMP | ^~~~~~~ CXXSurfaceMaker.cpp:431:2: warning: #warning Compiling for OMP [-Wcpp] 431 | #warning Compiling for OMP | ^~~~~~~ CXXSurfaceMaker.cpp:569:2: warning: #warning Compiling for OMP [-Wcpp] 569 | #warning Compiling for OMP | ^~~~~~~ In file included from CXXSurfaceVertex.h:26, from CXXBall.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXSurfaceMaker.cpp:31: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' CXXBall.cpp: In static member function 'static int CXXBall::triangulateBalls(std::vector&, std::vector&, double, CXXSurfaceMaker*, int)': CXXBall.cpp:88:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 88 | for (int i=0; i< nBalls; i++){ | ~^~~~~~~~ CXXBall.cpp:93:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 93 | if (!(i%100) || i==nBalls-1) { | ~^~~~~~~~~~ CXXBall.cpp:129:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 129 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 160 | for (int i=0; i&, std::vector&, std::map >&)': CXXBall.cpp:295:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 295 | for (int iBall=0; iBall< balls.size(); iBall++){ | ~~~~~^~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'int CXXSurfaceMaker::calculateVDWFromAtoms(mmdb::Manager*, int, int, double, double, double, bool)': CXXSurfaceMaker.cpp:193:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 193 | for (int i = 0; i < vdwBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:196:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 196 | delete static_cast(vdwBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:198:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 198 | for (int i = 0; i < contextBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:204:17: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 204 | delete static_cast(contextBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'int CXXSurfaceMaker::calculateAccessibleFromAtoms(mmdb::Manager*, int, int, double, double, double, bool)': CXXSurfaceMaker.cpp:255:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 255 | for (int i = 0; i < vdwBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:258:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 258 | delete static_cast(vdwBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:260:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 260 | for (int i = 0; i < contextBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:266:17: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 266 | delete static_cast(contextBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'int CXXSurfaceMaker::calculateFromAtoms(mmdb::Manager*, int, int, double, double, double, bool)': CXXSurfaceMaker.cpp:509:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 509 | for (int i = 0; i < vdwBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:512:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 512 | delete static_cast(vdwBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:514:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 514 | for (int i = 0; i < contextBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:517:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 517 | delete static_cast(contextBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:520:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 520 | for (int i = 0; i < reentrantProbes.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:522:9: warning: deleting object of polymorphic class type 'CXXReentrantProbeBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 522 | delete static_cast(reentrantProbes[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'SurfaceParameters CXXSurfaceMaker::measuredProperties()': CXXSurfaceMaker.cpp:571:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 571 | for (int iChildSurface = 0; iChildSurface < childSurfaces.size(); iChildSurface++) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libMoleculesToTrianglesCXXSurface.la -rpath /usr/lib/aarch64-linux-gnu CXXCircle.lo CXXCircleNode.lo CXXCoord.lo CXXFortranFile.lo CXXNewHood.lo CXXSphereElement.lo CXXSphereNode.lo CXXSphereTriangle.lo CXXSphereTriangleEdge.lo CXXSurface.lo CXXSurfaceVertex.lo CXXTorusElement.lo CXXTorusNode.lo CXXTriangle.lo CXXQADSurface.lo CXXQADSurfaceStaticData.lo CXXCreator.lo CXXSpace.lo CXXFFTSolventMap.lo CXXChargeTable.lo CXXException.lo CXXUtils.lo CXXBall.lo CXXSurfaceMaker.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsrfftw -lsfftw -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/CXXCircle.o .libs/CXXCircleNode.o .libs/CXXCoord.o .libs/CXXFortranFile.o .libs/CXXNewHood.o .libs/CXXSphereElement.o .libs/CXXSphereNode.o .libs/CXXSphereTriangle.o .libs/CXXSphereTriangleEdge.o .libs/CXXSurface.o .libs/CXXSurfaceVertex.o .libs/CXXTorusElement.o .libs/CXXTorusNode.o .libs/CXXTriangle.o .libs/CXXQADSurface.o .libs/CXXQADSurfaceStaticData.o .libs/CXXCreator.o .libs/CXXSpace.o .libs/CXXFFTSolventMap.o .libs/CXXChargeTable.o .libs/CXXException.o .libs/CXXUtils.o .libs/CXXBall.o .libs/CXXSurfaceMaker.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lsrfftw -lsfftw -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXSurface.so.0 -o .libs/libMoleculesToTrianglesCXXSurface.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.so.0" && ln -s "libMoleculesToTrianglesCXXSurface.so.0.0.0" "libMoleculesToTrianglesCXXSurface.so.0") libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.so" && ln -s "libMoleculesToTrianglesCXXSurface.so.0.0.0" "libMoleculesToTrianglesCXXSurface.so") libtool: link: ( cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.la" && ln -s "../libMoleculesToTrianglesCXXSurface.la" "libMoleculesToTrianglesCXXSurface.la" ) make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' Making all in CXXClasses make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo `test -f 'AtomPropertyRampColorRule.cpp' || echo './'`AtomPropertyRampColorRule.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. 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-I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Representation.lo `test -f 'Representation.cpp' || echo './'`Representation.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" 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libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo `test -f 'BoxSectionPrimitive.cpp' || echo './'`BoxSectionPrimitive.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection 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-I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AtomPropertyRampColorRule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXMatrix.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BallsPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BondsPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c RepresentationInstance.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Light.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DisplayPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c RotatedTranslatedScaledEntity.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DiscreteSegment.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BoxSectionPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o In file included from DisplayPrimitive.h:32, from Representation.h:36, from Representation.cpp:33: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from ColorRule.h:29, from AtomPropertyRampColorRule.h:27, from AtomPropertyRampColorRule.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from RotatedTranslatedScaledEntity.h:28, from RotatedTranslatedScaledEntity.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from PositionedEntity.h:28, from DirectedPositionedEntity.h:28, from DirectedPositionedEntity.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from RotatedTranslatedScaledEntity.h:28, from Light.h:29, from Light.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from RotatedTranslatedScaledEntity.h:28, from RepresentationInstance.h:32, from RepresentationInstance.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from BallsPrimitive.h:33, from BallsPrimitive.cpp:28: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from CXXMatrix.h:28, from CXXMatrix.cpp:24: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from BondsPrimitive.h:28, from BondsPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from DisplayPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from NRStuff.h:31, from DiscreteSegment.h:26, from DiscreteSegment.cpp:26: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from CylindersPrimitive.h:29, from BoxSectionPrimitive.h:31, from BoxSectionPrimitive.cpp:32: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo `test -f 'MolecularRepresentation.cpp' || echo './'`MolecularRepresentation.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo `test -f 'SecondaryColorScheme.cpp' || echo './'`SecondaryColorScheme.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo `test -f 'MyMolecule.cpp' || echo './'`MyMolecule.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo `test -f 'SolidColorRule.cpp' || echo './'`SolidColorRule.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' DiscreteSegment.cpp: In member function 'void DiscreteSegment::evaluateNormals()': DiscreteSegment.cpp:44:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 44 | for (int i=1; i<(calphas.size()-1); i++){ | ~^~~~~~~~~~~~~~~~~~~ DiscreteSegment.cpp: In member function 'void DiscreteSegment::smoothBetas()': DiscreteSegment.cpp:83:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 83 | for (int iCalpha=0; iCalpha::size_type' {aka 'long unsigned int'} [-Wsign-compare] 88 | && iCalpha+nInStrand < calphas.size()){ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ DiscreteSegment.cpp:98:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 98 | if (iCalpha+nInStrand < calphas.size()){ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ BoxSectionPrimitive.cpp: In member function 'virtual void BoxSectionPrimitive::generateArrays()': BoxSectionPrimitive.cpp:72:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 72 | for (int i=0; i< points.size(); i++){ | ~^~~~~~~~~~~~~~~ DiscreteSegment.cpp: In member function 'void DiscreteSegment::evaluateSplines()': DiscreteSegment.cpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 135 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 105 | for (int i=0; i< points.size()-1; i++){ | ~^~~~~~~~~~~~~~~~~ In file included from oglPolyhedron.h:29, from SpherePrimitive.h:30, from Representation.cpp:36: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from oglPolyhedron.h:29, from BallsPrimitive.cpp:30: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ BallsPrimitive.cpp: In member function 'virtual void BallsPrimitive::generateArrays()': BallsPrimitive.cpp:96:39: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 96 | for (int iVertex = 0; iVertex < ((Polyhedron *)poly)->nVertices(); iVertex++){ | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BallsPrimitive.cpp:110:35: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 110 | for (int iFace = 0; iFace < ((Polyhedron *)poly)->nFaces(); iFace++){ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MolecularRepresentation.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-ColorRule.lo `test -f 'ColorRule.cpp' || echo './'`ColorRule.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SolidColorRule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SecondaryColorScheme.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MyMolecule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-NRStuff.lo `test -f 'NRStuff.cpp' || echo './'`NRStuff.cpp In file included from MyMolecule.h:28, from MolecularRepresentation.h:32, from MolecularRepresentation.cpp:27: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo `test -f 'SpherePrimitive.cpp' || echo './'`SpherePrimitive.cpp In file included from ColorRule.h:29, from SolidColorRule.h:27, from SolidColorRule.cpp:26: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo `test -f 'ColorScheme.cpp' || echo './'`ColorScheme.cpp In file included from ColorRule.h:29, from ColorScheme.h:32, from SecondaryColorScheme.h:29, from SecondaryColorScheme.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from MyMolecule.h:28, from MyMolecule.cpp:27: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo `test -f 'Polyhedron.cpp' || echo './'`Polyhedron.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ColorRule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo `test -f 'SticksPrimitive.cpp' || echo './'`SticksPrimitive.cpp In file included from ColorRule.h:29, from ColorRule.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c NRStuff.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SpherePrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ColorScheme.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o In file included from NRStuff.h:31, from NRStuff.cpp:29: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo `test -f 'CompoundSelection.cpp' || echo './'`CompoundSelection.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo `test -f 'PositionedEntity.cpp' || echo './'`PositionedEntity.cpp In file included from DisplayPrimitive.h:32, from SpherePrimitive.h:29, from SpherePrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Polyhedron.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o In file included from MolecularRepresentation.cpp:28: DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from oglPolyhedron.h:29, from SpherePrimitive.h:30, from MolecularRepresentation.cpp:29: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ColorScheme.h:95:23: warning: 'virtual FCXXCoord ColorScheme::colorForAtom(const mmdb::Atom*, std::map, int>&)' was hidden [-Woverloaded-virtual=] 95 | virtual FCXXCoord colorForAtom(const mmdb::Atom* atom, std::map, int> &handles){ | ^~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SticksPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o SecondaryColorScheme.h:52:23: note: by 'virtual FCXXCoord SecondaryColorScheme::colorForAtom(mmdb::Atom*)' 52 | virtual FCXXCoord colorForAtom(mmdb::Atom* atom){ | ^~~~~~~~~~~~ In file included from MyMolecule.cpp:36: DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 542 | for (int iSegment = 0; iSegment < segments.size(); iSegment++){ | ~~~~~~~~~^~~~~~~~~~~~~~~~~ MolecularRepresentation.cpp: In member function 'int MolecularRepresentation::drawCalphas()': MolecularRepresentation.cpp:740:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 740 | for (int iSegment = 0; iSegment < segments.size(); iSegment++){ | ~~~~~~~~~^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c PositionedEntity.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo `test -f 'CylinderPoint.cpp' || echo './'`CylinderPoint.cpp In file included from MyMolecule.h:28, from CompoundSelection.h:35, from CompoundSelection.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SurfacePrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Renderer.lo `test -f 'Renderer.cpp' || echo './'`Renderer.cpp In file included from PositionedEntity.h:28, from PositionedEntity.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from SurfacePrimitive.h:28, from SurfacePrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from oglPolyhedron.h:29, from SpherePrimitive.h:30: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CylinderPoint.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Renderer.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o In file included from CylinderPoint.h:29, from CylinderPoint.cpp:28: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ColorScheme.cpp: In static member function 'static std::shared_ptr ColorScheme::colorRampChainsScheme()': ColorScheme.cpp:61:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 61 | for (int i=0; i() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo `test -f 'VertexColorNormalPrimitive.cpp' || echo './'`VertexColorNormalPrimitive.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo `test -f 'CylindersPrimitive.cpp' || echo './'`CylindersPrimitive.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo `test -f 'oglPolyhedron.cpp' || echo './'`oglPolyhedron.cpp CompoundSelection.cpp: In destructor 'CompoundSelection::~CompoundSelection()': CompoundSelection.cpp:36:13: warning: deleting object of polymorphic class type 'CompoundSelection' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 36 | delete p; | ^~~~~~~~ CompoundSelection.cpp:39:13: warning: deleting object of polymorphic class type 'MMDBStringPrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 39 | delete p; | ^~~~~~~~ CompoundSelection.cpp:42:13: warning: deleting object of polymorphic class type 'MMDBSecondaryTypePrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 42 | delete p; | ^~~~~~~~ CompoundSelection.cpp:45:13: warning: deleting object of polymorphic class type 'MMDBSubsetTypePrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 45 | delete p; | ^~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo `test -f 'MolecularRepresentationInstance.cpp' || echo './'`MolecularRepresentationInstance.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c VertexColorNormalPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CylindersPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c oglPolyhedron.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from VertexColorNormalPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from Polyhedron.h:32, from oglPolyhedron.h:29, from oglPolyhedron.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Quaternion.lo `test -f 'Quaternion.cpp' || echo './'`Quaternion.cpp In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from CylindersPrimitive.h:29, from CylindersPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd SurfacePrimitive.cpp: In member function 'virtual void SurfacePrimitive::generateArrays()': SurfacePrimitive.cpp:100:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 100 | for (int i=0; i< childSurface.numberOfTriangles(); i++){ | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SurfacePrimitive.cpp: In constructor 'SurfacePrimitive::SurfacePrimitive(mmdb::Manager*, int, int, std::shared_ptr, SurfaceType, float, float)': SurfacePrimitive.cpp:145:42: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 145 | for (int iVertex = 0; iVertex() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ oglPolyhedron.cpp: In member function 'virtual void oglPolyhedron::generateArrays()': oglPolyhedron.cpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 48 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 63 | for (int i=0; i() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' CylindersPrimitive.cpp: In member function 'virtual void CylindersPrimitive::generateArrays()': CylindersPrimitive.cpp:85:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 85 | for (int i=0; i< points.size(); i++){ | ~^~~~~~~~~~~~~~~ CylindersPrimitive.cpp:113:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 113 | for (int i=0; i< points.size()-1; i++){ | ~^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Vector2.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Vector3.lo `test -f 'Vector3.cpp' || echo './'`Vector3.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o libMoleculesToTrianglesCXXClasses_la-lfit.lo `test -f 'lfit.c' || echo './'`lfit.c libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Vector3.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DishyBase.lo `test -f 'DishyBase.cpp' || echo './'`DishyBase.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo `test -f 'FlatFanPrimitive.cpp' || echo './'`FlatFanPrimitive.cpp libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c lfit.c -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DishyBase.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c FlatFanPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o In file included from DishyBase.h:31, from DishyBase.cpp:23: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from FlatFanPrimitive.h:29, from FlatFanPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' MyMolecule.cpp: In member function 'int MyMolecule::loadCoords(char*, int)': MyMolecule.cpp:92:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 8 bytes from a string of length 225 [-Wstringop-truncation] 92 | strncpy (field, tokenBuffer+30, 8); | ^ MyMolecule.cpp:94:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 8 bytes from a string of length 217 [-Wstringop-truncation] 94 | strncpy (field, tokenBuffer+38, 8); | ^ MyMolecule.cpp:96:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 8 bytes from a string of length 209 [-Wstringop-truncation] 96 | strncpy (field, tokenBuffer+46, 8); | ^ MyMolecule.cpp:99:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 6 bytes from a string of length 201 [-Wstringop-truncation] 99 | strncpy (field, tokenBuffer+54, 6); | ^ MyMolecule.cpp:101:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 6 bytes from a string of length 195 [-Wstringop-truncation] 101 | strncpy (field, tokenBuffer+60, 6); | ^ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libMoleculesToTrianglesCXXClasses.la -rpath /usr/lib/aarch64-linux-gnu libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-Representation.lo libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo libMoleculesToTrianglesCXXClasses_la-Light.lo libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo libMoleculesToTrianglesCXXClasses_la-ColorRule.lo libMoleculesToTrianglesCXXClasses_la-NRStuff.lo libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo libMoleculesToTrianglesCXXClasses_la-Renderer.lo libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-Quaternion.lo libMoleculesToTrianglesCXXClasses_la-Vector2.lo libMoleculesToTrianglesCXXClasses_la-Vector3.lo libMoleculesToTrianglesCXXClasses_la-lfit.lo libMoleculesToTrianglesCXXClasses_la-DishyBase.lo libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo ../../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o .libs/libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/.libs -L/usr/lib/aarch64-linux-gnu ../../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXClasses.so.0 -o .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.so.0" && ln -s "libMoleculesToTrianglesCXXClasses.so.0.0.0" "libMoleculesToTrianglesCXXClasses.so.0") libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.so" && ln -s "libMoleculesToTrianglesCXXClasses.so.0.0.0" "libMoleculesToTrianglesCXXClasses.so") libtool: link: ( cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.la" && ln -s "../libMoleculesToTrianglesCXXClasses.la" "libMoleculesToTrianglesCXXClasses.la" ) make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making all in pli make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-ligand-interactions.lo protein-ligand-interactions.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flev-annotations.lo flev-annotations.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pi-stacking.lo pi-stacking.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sdf-interface.lo sdf-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pi-stacking.cc -fPIC -DPIC -o .libs/pi-stacking.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sdf-interface.cc -fPIC -DPIC -o .libs/sdf-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-ligand-interactions.cc -fPIC -DPIC -o .libs/protein-ligand-interactions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flev-annotations.cc -fPIC -DPIC -o .libs/flev-annotations.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from pi-stacking.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from sdf-interface-for-export.hh:31, from sdf-interface.cc:49: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from sdf-interface.cc:147: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from sdf-interface.cc:37: In constructor 'constexpr std::pair<_T1, _T2>::pair(_U1&&, _U2&&) [with _U1 = bool; _U2 = clipper::Coord_orth&; typename std::enable_if<(std::_PCC::_MoveConstructiblePair<_U1, _U2>() && std::_PCC::_ImplicitlyMoveConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)' at sdf-interface.cc:419:56: /usr/include/c++/14/bits/stl_pair.h:882:42: warning: 'v' may be used uninitialized [-Wmaybe-uninitialized] 882 | : first(std::forward<_U1>(__x)), second(std::forward<_U2>(__y)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sdf-interface.cc: In function 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)': sdf-interface.cc:409:24: note: 'v' declared here 409 | clipper::Coord_orth v; | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-pli.la -rpath /usr/lib/aarch64-linux-gnu protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo sdf-interface.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral 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-fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-pli.so.0 -o .libs/libcoot-pli.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-pli.so.0" && ln -s "libcoot-pli.so.0.0.0" "libcoot-pli.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-pli.so" && ln -s "libcoot-pli.so.0.0.0" "libcoot-pli.so") libtool: link: ( cd ".libs" && rm -f "libcoot-pli.la" && ln -s "../libcoot-pli.la" "libcoot-pli.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' Making all in greg-tests make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' Making all in python-tests make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' Making all in cootilus make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. 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-DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cootilus-build.lo cootilus-build.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-ss-find.cpp -fPIC -DPIC -o .libs/nautilus-ss-find.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-target.cpp -fPIC -DPIC -o .libs/nautilus-target.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-tools.cpp -fPIC -DPIC -o .libs/nautilus-tools.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cootilus-build.cpp -fPIC -DPIC -o .libs/cootilus-build.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nucleicacid_db.cpp -fPIC -DPIC -o .libs/nucleicacid_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-join.cpp -fPIC -DPIC -o .libs/nautilus-join.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootilus.la -rpath /usr/lib/aarch64-linux-gnu nucleicacid_db.lo nautilus-tools.lo nautilus-ss-find.lo nautilus-join.lo nautilus-target.lo cootilus-build.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/nucleicacid_db.o .libs/nautilus-tools.o .libs/nautilus-ss-find.o .libs/nautilus-join.o .libs/nautilus-target.o .libs/cootilus-build.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro 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-I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom_types.lo atom_types.cc swig -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -o pyrogen-swig.cc -python -shadow -c++ ../pyrogen/pyrogen-swig.i /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o restraints.lo restraints.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o restraints-boost.lo restraints-boost.cc ../pyrogen/restraints.hh:57: Warning 389: operator[] ignored (consider using %extend) libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cairo-molecule.cc -fPIC -DPIC -o .libs/cairo-molecule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmff-restraints.cc -fPIC -DPIC -o .libs/mmff-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c py-restraints.cc -fPIC -DPIC -o .libs/py-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c restraints.cc -fPIC -DPIC -o .libs/restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom_types.cc -fPIC -DPIC -o .libs/atom_types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c restraints-boost.cc -fPIC -DPIC -o .libs/restraints-boost.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pyrogen-swig.lo pyrogen-swig.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pyrogen-swig.cc -fPIC -DPIC -o .libs/pyrogen-swig.o In file included from cairo-molecule.hh:34, from cairo-molecule.cc:27: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cairo-molecule.hh:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from atom_types.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from mmff-restraints.hh:27, from mmff-restraints.cc:23: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from ../pyrogen/restraints-private.hh:33, from ../pyrogen/restraints.hh:39, from pyrogen-swig.cc:5383: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ ../lidia-core/lig-build.hh: In instantiation of 'std::pair lig_build::molecule_t::ligand_extents() const [with Ta = coot::cairo_atom_t; Tb = coot::cairo_bond_t]': cairo-molecule.cc:687:70: required from here 687 | std::pair ext = ligand_extents(); | ~~~~~~~~~~~~~~^~ ../lidia-core/lig-build.hh:1503:7: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1503 | ligand_extents() const { | ^~~~~~~~~~~~~~ In file included from ../ideal/simple-restraint.hh:162, from restraints-boost.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-boost.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-private.hh:33, from restraints.hh:39, from py-restraints.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-private.hh:33, from restraints.hh:39, from restraints.cc:26: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from restraints.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from restraints.cc:34: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol 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-L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot_py_restraints.so.0" && ln -s "libcoot_py_restraints.so.0.0.0" "libcoot_py_restraints.so.0") libtool: link: (cd ".libs" && rm -f "libcoot_py_restraints.so" && ln -s "libcoot_py_restraints.so.0.0.0" "libcoot_py_restraints.so") libtool: link: ( cd ".libs" && rm -f "libcoot_py_restraints.la" && ln -s "../libcoot_py_restraints.la" "libcoot_py_restraints.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/restraints-boost.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pyrogen/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs ./.libs/libcoot_py_restraints.so ../pli/.libs/libcoot-pli.so ../ideal/.libs/libcoot-ideal.so 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"-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-merge-molecules.cc -fPIC -DPIC -o .libs/coot-molecule-merge-molecules.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-colour.cc -fPIC -DPIC -o .libs/coot-colour.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule.cc -fPIC -DPIC -o .libs/coot-molecule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container.cc -fPIC -DPIC -o .libs/molecules-container.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-bonds.cc -fPIC -DPIC -o .libs/coot-molecule-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c colour-functions.cc -fPIC -DPIC -o .libs/colour-functions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-modelling.cc -fPIC -DPIC -o .libs/molecules-container-modelling.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-maps.cc -fPIC -DPIC -o .libs/coot-molecule-maps.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-validation.cc -fPIC -DPIC -o .libs/coot-molecule-validation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-a-dodec.cc -fPIC -DPIC -o .libs/make-a-dodec.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-ligand-fitting.lo molecules-container-ligand-fitting.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-ligand-fitting.cc -fPIC -DPIC -o .libs/molecules-container-ligand-fitting.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi-prob.lo phi-psi-prob.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-moltris.lo coot-molecule-moltris.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi-prob.cc -fPIC -DPIC -o .libs/phi-psi-prob.o In file included from coot-molecule-maps.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-moltris.cc -fPIC -DPIC -o .libs/coot-molecule-moltris.o In file included from ../mini-mol/mini-mol.hh:29, from ../ligand/ligand.hh:32, from ../ligand/residue_by_phi_psi.hh:37, from add-terminal-residue.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-replace-fragment.lo coot-molecule-replace-fragment.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-backup.lo coot-molecule-backup.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-replace-fragment.cc -fPIC -DPIC -o .libs/coot-molecule-replace-fragment.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-backup.cc -fPIC -DPIC -o .libs/coot-molecule-backup.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from coot-molecule.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-bonds.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-modelling.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47, from coot-molecule-maps.cc:36: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-validation.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-merge-molecules.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from coot-molecule-moltris.cc:31: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from ../ideal/simple-restraint.hh:174, from coot-molecule.hh:47, from coot-molecule.cc:38: ../ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': ../ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule-backup.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../ligand/ligand.hh:32, from ../ligand/wligand.hh:25, from molecules-container-ligand-fitting.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47, from molecules-container.hh:19, from molecules-container-ligand-fitting.cc:6: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47, from coot-molecule-backup.cc:29: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-moltris.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-replace-fragment.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-bonds-instanced.lo coot-molecule-bonds-instanced.cc In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-bonds-instanced.cc -fPIC -DPIC -o .libs/coot-molecule-bonds-instanced.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-bonds-instanced.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-mmrrcc.lo molecules-container-mmrrcc.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-mmrrcc.cc -fPIC -DPIC -o .libs/molecules-container-mmrrcc.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ molecules-container-ligand-fitting.cc: In member function 'float molecules_container_t::fit_to_map_by_random_jiggle_with_blur_using_cid(int, int, const std::string&, float, int, float)': molecules-container-ligand-fitting.cc:414:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 414 | auto p = coot::util::mean_and_variance(xmap); | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-gltf.lo molecules-container-gltf.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-mmrrcc.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-gltf.cc -fPIC -DPIC -o .libs/molecules-container-gltf.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-refine.lo coot-molecule-refine.cc In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-refine.cc -fPIC -DPIC -o .libs/coot-molecule-refine.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-superpose.lo molecules-container-superpose.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-superpose.cc -fPIC -DPIC -o .libs/molecules-container-superpose.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rigid-body-fit.lo rigid-body-fit.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rigid-body-fit.cc -fPIC -DPIC -o .libs/rigid-body-fit.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o moorhen-h-bonds.lo moorhen-h-bonds.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-gltf.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from rigid-body-fit.hh:7, from rigid-body-fit.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c moorhen-h-bonds.cc -fPIC -DPIC -o .libs/moorhen-h-bonds.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-bucca-ml-growing.lo molecules-container-bucca-ml-growing.cc In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-superpose.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-bucca-ml-growing.cc -fPIC -DPIC -o .libs/molecules-container-bucca-ml-growing.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-refine.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o instancing.lo instancing.cc In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-maps.lo molecules-container-maps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c instancing.cc -fPIC -DPIC -o .libs/instancing.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-maps.cc -fPIC -DPIC -o .libs/molecules-container-maps.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from moorhen-h-bonds.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-change-chain-id.lo coot-molecule-change-chain-id.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o blender-mesh.lo blender-mesh.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-change-chain-id.cc -fPIC -DPIC -o .libs/coot-molecule-change-chain-id.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-blender.lo coot-molecule-blender.cc In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c blender-mesh.cc -fPIC -DPIC -o .libs/blender-mesh.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-blender.cc -fPIC -DPIC -o .libs/coot-molecule-blender.o In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-bucca-ml-growing.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-maps.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-blender.lo molecules-container-blender.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-blender.cc -fPIC -DPIC -o .libs/molecules-container-blender.o In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ swig -o wrap-coot-api.cc -python -c++ coot-headless-api.i molecules-container.hh:953: Warning 325: Nested class not currently supported (auto_read_mtz_info_t ignored) molecules-container.hh:1042: Warning 325: Nested class not currently supported (r_factor_stats ignored) molecules-container.hh:1709: Warning 325: Nested class not currently supported (fit_ligand_info_t ignored) molecules-container.hh:1824: Warning 325: Nested class not currently supported (ltj_stats_t ignored) In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-change-chain-id.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o _coot_headless_api_la-molecules-container-swig.lo `test -f 'molecules-container-swig.cc' || echo './'`molecules-container-swig.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-swig.cc -fPIC -DPIC -o .libs/_coot_headless_api_la-molecules-container-swig.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-blender.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-blender.cc:3: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o _coot_headless_api_la-wrap-coot-api.lo `test -f 'wrap-coot-api.cc' || echo './'`wrap-coot-api.cc In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c wrap-coot-api.cc -fPIC -DPIC -o .libs/_coot_headless_api_la-wrap-coot-api.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-swig.cc:6: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from wrap-coot-api.cc:3435: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../ligand/libcoot-ligand.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../analysis/libcoot-analysis.la ../density-contour/libcoot-isosurface.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -Wl,-z,relro -o libcoot-api.la -rpath /usr/lib/aarch64-linux-gnu coot-molecule.lo coot-colour.lo add-terminal-residue.lo rama-plot-phi-psi.lo colour-functions.lo coot-molecule-maps.lo coot-molecule-merge-molecules.lo coot-molecule-bonds.lo coot-molecule-validation.lo molecules-container-modelling.lo molecules-container.lo make-a-dodec.lo molecules-container-ligand-fitting.lo phi-psi-prob.lo coot-molecule-moltris.lo coot-molecule-replace-fragment.lo coot-molecule-backup.lo coot-molecule-bonds-instanced.lo molecules-container-mmrrcc.lo molecules-container-gltf.lo coot-molecule-refine.lo molecules-container-superpose.lo rigid-body-fit.lo moorhen-h-bonds.lo molecules-container-bucca-ml-growing.lo instancing.lo molecules-container-maps.lo coot-molecule-change-chain-id.lo blender-mesh.lo coot-molecule-blender.lo molecules-container-blender.lo In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-molecule.o .libs/coot-colour.o .libs/add-terminal-residue.o .libs/rama-plot-phi-psi.o .libs/colour-functions.o .libs/coot-molecule-maps.o .libs/coot-molecule-merge-molecules.o .libs/coot-molecule-bonds.o .libs/coot-molecule-validation.o .libs/molecules-container-modelling.o .libs/molecules-container.o .libs/make-a-dodec.o .libs/molecules-container-ligand-fitting.o .libs/phi-psi-prob.o .libs/coot-molecule-moltris.o .libs/coot-molecule-replace-fragment.o .libs/coot-molecule-backup.o .libs/coot-molecule-bonds-instanced.o .libs/molecules-container-mmrrcc.o .libs/molecules-container-gltf.o .libs/coot-molecule-refine.o .libs/molecules-container-superpose.o .libs/rigid-body-fit.o .libs/moorhen-h-bonds.o .libs/molecules-container-bucca-ml-growing.o .libs/instancing.o .libs/molecules-container-maps.o .libs/coot-molecule-change-chain-id.o .libs/blender-mesh.o .libs/coot-molecule-blender.o .libs/molecules-container-blender.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/density-contour/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../MoleculesToTriangles/CXXClasses/.libs/libMoleculesToTrianglesCXXClasses.so ../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so ../ligand/.libs/libcoot-ligand.so ../pli/.libs/libcoot-pli.so ../ideal/.libs/libcoot-ideal.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../analysis/.libs/libcoot-analysis.so ../density-contour/.libs/libcoot-isosurface.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coords/.libs/libcoot-coords.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-api.so.0 -o .libs/libcoot-api.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-api.so.0" && ln -s "libcoot-api.so.0.0.0" "libcoot-api.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-api.so" && ln -s "libcoot-api.so.0.0.0" "libcoot-api.so") libtool: link: ( cd ".libs" && rm -f "libcoot-api.la" && ln -s "../libcoot-api.la" "libcoot-api.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined -Wl,-z,relro -o _coot_headless_api.la -rpath /usr/lib/python3/dist-packages _coot_headless_api_la-wrap-coot-api.lo _coot_headless_api_la-molecules-container-swig.lo libcoot-api.la libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/_coot_headless_api_la-wrap-coot-api.o .libs/_coot_headless_api_la-molecules-container-swig.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/api/.libs ./.libs/libcoot-api.so -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot_headless_api.so.0 -o .libs/_coot_headless_api.so.0.0.0 libtool: link: (cd ".libs" && rm -f "_coot_headless_api.so.0" && ln -s "_coot_headless_api.so.0.0.0" "_coot_headless_api.so.0") libtool: link: (cd ".libs" && rm -f "_coot_headless_api.so" && ln -s "_coot_headless_api.so.0.0.0" "_coot_headless_api.so") libtool: link: ( cd ".libs" && rm -f "_coot_headless_api.la" && ln -s "../_coot_headless_api.la" "_coot_headless_api.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/api' Making all in layla make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" 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-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o layla_embedded.lo layla_embedded.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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-DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 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-I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c state.cpp -fPIC -DPIC -o .libs/state.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c layla_embedded.cpp -fPIC -DPIC -o .libs/layla_embedded.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c signals.cpp -fPIC -DPIC -o .libs/signals.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c notifier.cpp -fPIC -DPIC -o .libs/notifier.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ui.cpp -fPIC -DPIC -o .libs/ui.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas.cpp -fPIC -DPIC -o .libs/ligand_editor_canvas.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c python_utils.cpp -fPIC -DPIC -o .libs/python_utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/model.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/model.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c utils.cpp -fPIC -DPIC -o .libs/utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/core.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/core.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/tools.lo ligand_editor_canvas/tools.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/tools.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/tools.o In file included from python_utils.cpp:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/render.lo ligand_editor_canvas/render.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/render.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/render.o In file included from main.cpp:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ui.cpp:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ligand_editor_canvas/core.cpp: In member function 'void coot::ligand_editor_canvas::impl::WidgetCoreData::undo_edition()': ligand_editor_canvas/core.cpp:74:34: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 74 | if(this->state_stack->size() > this->state_stack_pos + 1) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp: In member function 'std::pair<_graphene_point_t, _graphene_point_t> coot::ligand_editor_canvas::impl::MoleculeRenderContext::cropped_bond_coords(const graphene_point_t&, unsigned int, const graphene_point_t&, unsigned int)': ligand_editor_canvas/render.cpp:756:219: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 756 | std::pair MoleculeRenderContext::cropped_bond_coords(const graphene_point_t& first_atom, unsigned int first_atom_idx, const graphene_point_t& second_atom, unsigned int second_atom_idx) { | ^ ligand_editor_canvas/model.cpp: In member function 'std::pair coot::ligand_editor_canvas::CanvasMolecule::get_on_screen_coords(float, float) const': ligand_editor_canvas/model.cpp:144:85: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 144 | std::pair CanvasMolecule::get_on_screen_coords(float x, float y) const noexcept { | ^~~~~~~~ ligand_editor_canvas/model.cpp: In member function 'void coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()': ligand_editor_canvas/model.cpp:564:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 564 | while(i!=ring.size()) { | ~^~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:586:62: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] 586 | bool x_requirement = bond_ptr->second_atom_x > bond_ptr->first_atom_x == sign_of_y_offset_from_center; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:588:62: warning: suggest parentheses around comparison in operand of '!=' [-Wparentheses] 588 | bool y_requirement = bond_ptr->second_atom_y <= bond_ptr->first_atom_y != sign_of_x_offset_from_center; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:615:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 615 | if(j==ring.size()) { | ~^~~~~~~~~~~~~ ligand_editor_canvas/model.cpp: In member function 'void coot::ligand_editor_canvas::CanvasMolecule::build_internal_molecule_representation(const RDGeom::INT_POINT2D_MAP&)': ligand_editor_canvas/model.cpp:786:54: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'std::tuple_element<0, const std::pair >::type' {aka 'const int'} [-Wsign-compare] 786 | auto the_other_atom_idx = first_atom_idx == atom_idx ? second_atom_idx : first_atom_idx; | ~~~~~~~~~~~~~~~^~~~~~~~~~~ ligand_editor_canvas/model.cpp: In lambda function: ligand_editor_canvas/model.cpp:872:68: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 872 | unsigned int the_other_atom_idx = bond->first_atom_idx == atom_idx ? bond->second_atom_idx : bond->first_atom_idx; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ signals.cpp: In lambda function: signals.cpp:68:36: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 68 | if(gtk_combo_box_get_active(cb) == -1) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94, from signals.cpp:22: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:69:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 69 | gtk_combo_box_set_active(cb,0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_apply(GtkButton*, gpointer)': signals.cpp:73:34: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 73 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(molecule_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:83:39: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 83 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(molecule_combobox), smiles.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_generator_monomer_id_combobox_changed(GtkComboBox*, gpointer)': signals.cpp:96:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 96 | if(strcmp(gtk_combo_box_get_active_id(self),"Custom") != 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_generator_program_combobox_changed(GtkComboBox*, gpointer)': signals.cpp:108:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 108 | if(strcmp(gtk_combo_box_get_active_id(self),"acedrg") == 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_generator_input_format_combobox_changed(GtkComboBox*, gpointer)': signals.cpp:121:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 121 | if(strcmp(gtk_combo_box_get_active_id(self),"molfile") == 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_apply_dialog_accepted(GtkButton*, gpointer)': signals.cpp:159:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 159 | if(strcmp(gtk_combo_box_get_active_id(GTK_COMBO_BOX(monomer_id_combobox)),"Custom") != 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:160:73: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 160 | auto monomer_id = std::string(gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(monomer_id_combobox))); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:169:71: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 169 | auto program_name = std::string(gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(program_combobox))); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:172:76: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 172 | auto input_format_name = std::string(gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(input_format_combobox))); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:175:74: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 175 | const auto* molecule_smiles_cstr = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(molecule_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_wedge(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:869:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 869 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_dashed_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:910:95: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 910 | auto [current,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); | ^ ligand_editor_canvas/render.cpp:912:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 912 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_wavy_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:943:110: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 943 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_side_bond_line(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool, std::optional, std::optional)': ligand_editor_canvas/render.cpp:1067:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1067 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp:1115:5: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1115 | ); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_centered_double_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:1171:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1171 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp:1185:110: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1185 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from state.cpp:38: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ state.cpp: In member function 'void coot::layla::LaylaState::load_from_smiles()': state.cpp:147:39: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 147 | auto* load_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43, from ligand_editor_canvas/render.hpp:25, from ligand_editor_canvas/core.hpp:30, from ligand_editor_canvas.hpp:25, from state.hpp:24, from state.cpp:22: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:30, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcssenumtypes.h:11, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:33, from /usr/include/gtk-4.0/gtk/gtk.h:29: state.cpp: In lambda function: state.cpp:167:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 167 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:166:41: note: in expansion of macro 'G_CALLBACK' 166 | g_signal_connect(entry, "activate", G_CALLBACK(+[](GtkEntry* entry, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:176:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 176 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:175:48: note: in expansion of macro 'G_CALLBACK' 175 | g_signal_connect(submit_button, "clicked", G_CALLBACK(+[](GtkButton* btn, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:200:51: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 200 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 201 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 202 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 204 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 205 | "Error: Molecule could not be constructed.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 | e.what() | ~~~~~~~~ 207 | ); | ~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:179:47: note: in expansion of macro 'G_CALLBACK' 179 | g_signal_connect(load_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:192: /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:211:28: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 211 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:179:47: note: in expansion of macro 'G_CALLBACK' 179 | g_signal_connect(load_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::file_import_molecule()': state.cpp:221:44: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 221 | GtkWidget *load_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:246:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 246 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:293:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 293 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 294 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 295 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 297 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 298 | "Error: Monomer \"%s\" could not be found.\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 | monomer_type.c_str() | ~~~~~~~~~~~~~~~~~~~~ 300 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:304:32: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 304 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::run_choose_element_dialog()': state.cpp:313:49: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 313 | auto* choose_element_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:337:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 337 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:336:48: note: in expansion of macro 'G_CALLBACK' 336 | g_signal_connect(submit_button, "clicked", G_CALLBACK(+[](GtkButton* btn, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:353:51: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 353 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 354 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 355 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 357 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 358 | "Error: Invalid symbol:\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | e.what() | ~~~~~~~~ 360 | ); | ~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:340:57: note: in expansion of macro 'G_CALLBACK' 340 | g_signal_connect(choose_element_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:364:28: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 364 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:340:57: note: in expansion of macro 'G_CALLBACK' 340 | g_signal_connect(choose_element_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::file_fetch_molecule()': state.cpp:374:44: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 374 | GtkWidget *load_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:396:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 396 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:429:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 429 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 430 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 431 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 433 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 434 | "Error: Molecule could not be fetched.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 | e.what() | ~~~~~~~~ 436 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:440:32: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 440 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::save_file(unsigned int, const char*, GtkWindow*)': state.cpp:479:47: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 479 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 480 | parent, | ~~~~~~~ 481 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 483 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 484 | "Error: Molecule could not be saved to file.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 | e.what() | ~~~~~~~~ 486 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:487:24: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 487 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:570:56: warning: too many arguments for format [-Wformat-extra-args] 570 | "Nothing was chosen!", | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:561:58: note: in expansion of macro 'G_CALLBACK' 561 | g_signal_connect(G_OBJECT(ok_button), "clicked", G_CALLBACK(+[](GtkButton* button, gpointer userdata){ | ^~~~~~~~~~ state.cpp:566:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 566 | auto* message = gtk_message_dialog_new(window, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 567 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 569 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 570 | "Nothing was chosen!", | ~~~~~~~~~~~~~~~~~~~~~~ 571 | NULL); | ~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:561:58: note: in expansion of macro 'G_CALLBACK' 561 | g_signal_connect(G_OBJECT(ok_button), "clicked", G_CALLBACK(+[](GtkButton* button, gpointer userdata){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:572:32: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 572 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:561:58: note: in expansion of macro 'G_CALLBACK' 561 | g_signal_connect(G_OBJECT(ok_button), "clicked", G_CALLBACK(+[](GtkButton* button, gpointer userdata){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:607:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 607 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 608 | GTK_WINDOW(source_object), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 611 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 612 | "Error: Molecule could not be loaded.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 | e.what() | ~~~~~~~~ 614 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas.cpp: In function 'void on_hover(GtkEventControllerMotion*, gdouble, gdouble, gpointer)': ligand_editor_canvas.cpp:260:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 260 | auto coords = target.get_on_screen_coords(atom.x, atom.y); | ^ ligand_editor_canvas/model.cpp: In instantiation of 'coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings():: [with auto:30 = std::shared_ptr]': /usr/include/c++/14/bits/predefined_ops.h:318:23: required from 'bool __gnu_cxx::__ops::_Iter_pred<_Predicate>::operator()(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()::]' 318 | { return bool(_M_pred(*__it)); } | ~~~~~~~^~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2101:14: required from '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' 2101 | if (__pred(__first)) | ~~~~~~^~~~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2146:23: required from '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' 2146 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2147 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:3876:28: required from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()::]' 3876 | return std::__find_if(__first, __last, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 3877 | __gnu_cxx::__ops::__pred_iter(__pred)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:572:37: required from here 572 | auto bond = std::find_if(bonds_of_atom_one->second.begin(),bonds_of_atom_one->second.end(),[=](const auto bond){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 | }); | ~~ ligand_editor_canvas/model.cpp:573:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:573:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:574:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:574:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp: In instantiation of 'coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int):: [with auto:35 = std::shared_ptr]': /usr/include/c++/14/bits/predefined_ops.h:318:23: required from 'bool __gnu_cxx::__ops::_Iter_pred<_Predicate>::operator()(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int)::]' 318 | { return bool(_M_pred(*__it)); } | ~~~~~~~^~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2101:14: required from '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' 2101 | if (__pred(__first)) | ~~~~~~^~~~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2146:23: required from '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' 2146 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2147 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:3876:28: required from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int)::]' 3876 | return std::__find_if(__first, __last, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 3877 | __gnu_cxx::__ops::__pred_iter(__pred)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:928:31: required from here 928 | auto target = std::find_if(bonds_for_atom_a->second.begin(),bonds_for_atom_a->second.end(),[=](const auto& bond){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 | }); | ~~ ligand_editor_canvas/model.cpp:929:38: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ ligand_editor_canvas/model.cpp:929:72: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_wedge(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:846:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 846 | void MoleculeRenderContext::draw_straight_wedge(const CanvasMolecule::Bond& bond, bool reversed) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:846:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:846:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:867:63: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 867 | auto [origin_cropped,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:869:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 869 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_dashed_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:889:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 889 | void MoleculeRenderContext::draw_straight_dashed_bond(const CanvasMolecule::Bond& bond, bool reversed) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:889:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:889:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:889:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:910:56: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 910 | auto [current,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:912:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 912 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_wavy_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:934:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 934 | void MoleculeRenderContext::draw_wavy_bond(const CanvasMolecule::Bond& bond) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_side_bond_line(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool, std::optional, std::optional)': ligand_editor_canvas/render.cpp:1066:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1066 | void MoleculeRenderContext::draw_side_bond_line(const CanvasMolecule::Bond& bond, bool addOrSub, std::optional first_shortening_proportion, std::optional second_shortening_proportion) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:1066:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1066:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1066:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1067:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1067 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp:1110:50: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1110 | auto [first_c,second_c] = cropped_bond_coords( | ~~~~~~~~~~~~~~~~~~~^ 1111 | first_atom_centered, | ~~~~~~~~~~~~~~~~~~~~ 1112 | bond.first_atom_idx, | ~~~~~~~~~~~~~~~~~~~~ 1113 | second_atom_centered, | ~~~~~~~~~~~~~~~~~~~~~ 1114 | bond.second_atom_idx | ~~~~~~~~~~~~~~~~~~~~ 1115 | ); | ~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_centered_double_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:1170:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1170 | void MoleculeRenderContext::draw_centered_double_bond(const CanvasMolecule::Bond& bond) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:1170:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1170:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1170:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1171:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1171 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp:1185:46: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1185 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-layla.la -rpath /usr/lib/aarch64-linux-gnu layla_embedded.lo generators.lo notifier.lo signals.lo state.lo ui.lo utils.lo ligand_editor_canvas/core.lo ligand_editor_canvas.lo ligand_editor_canvas/model.lo ligand_editor_canvas/tools.lo ligand_editor_canvas/render.lo python_utils.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/layla_embedded.o .libs/generators.o .libs/notifier.o .libs/signals.o .libs/state.o .libs/ui.o .libs/utils.o ligand_editor_canvas/.libs/core.o .libs/ligand_editor_canvas.o ligand_editor_canvas/.libs/model.o ligand_editor_canvas/.libs/tools.o ligand_editor_canvas/.libs/render.o .libs/python_utils.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-layla.so.0 -o .libs/libcoot-layla.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-layla.so.0" && ln -s "libcoot-layla.so.0.0.0" "libcoot-layla.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-layla.so" && ln -s "libcoot-layla.so.0.0.0" "libcoot-layla.so") libtool: link: ( cd ".libs" && rm -f "libcoot-layla.la" && ln -s "../libcoot-layla.la" "libcoot-layla.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o layla main.o libcoot-layla.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/layla main.o -lcurl ./.libs/libcoot-layla.so ../utils/.libs/libcoot-utils.so -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' Making all in validation-graphs make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o residue-validation-information.lo residue-validation-information.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi 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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o validation-information.lo validation-information.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-validation-information.cc -fPIC -DPIC -o .libs/residue-validation-information.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-information.cc -fPIC -DPIC -o .libs/validation-information.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-view-widget.cc -fPIC -DPIC -o .libs/sequence-view-widget.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-graphs.cc -fPIC -DPIC -o .libs/validation-graphs.o validation-graph-widget.cc: In function 'void coot_validation_graph_snapshot(GtkWidget*, GtkSnapshot*)': validation-graph-widget.cc:229:66: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 229 | GtkStyleContext* style_context = gtk_widget_get_style_context(widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from validation-graph-widget.hh:28, from validation-graph-widget.cc:26: /usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ validation-graph-widget.cc:230:32: warning: 'void gtk_style_context_get_color(GtkStyleContext*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 230 | gtk_style_context_get_color(style_context,&attribute_color); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:267: /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:112:6: note: declared here 112 | void gtk_style_context_get_color (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused 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-Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../analysis/.libs/libcoot-analysis.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-validation-graphs.so.0 -o .libs/libcoot-validation-graphs.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-validation-graphs.so.0" && ln -s "libcoot-validation-graphs.so.0.0.0" "libcoot-validation-graphs.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-validation-graphs.so" && ln -s "libcoot-validation-graphs.so.0.0.0" "libcoot-validation-graphs.so") libtool: link: ( cd ".libs" && rm -f "libcoot-validation-graphs.la" && ln -s "../libcoot-validation-graphs.la" "libcoot-validation-graphs.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' Making all in src make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 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-I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o boot-python.lo boot-python.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ 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-DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-side-chain.lo c-interface-build-side-chain.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c init_coot_as_python_module.cc -fPIC -DPIC -o .libs/init_coot_as_python_module.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c boids.cc -fPIC -DPIC -o .libs/boids.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c boot-python.cc -fPIC -DPIC -o .libs/boot-python.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-overlaps.cc -fPIC -DPIC -o .libs/atom-overlaps.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c scm-boot-guile.cc -fPIC -DPIC -o .libs/scm-boot-guile.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c git-revision-count.cc -fPIC -DPIC -o .libs/git-revision-count.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-analysis.cc -fPIC -DPIC -o .libs/c-interface-analysis.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-side-chain.cc -fPIC -DPIC -o .libs/c-interface-build-side-chain.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-main-chain.cc -fPIC -DPIC -o .libs/c-interface-build-main-chain.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-bonds.cc -fPIC -DPIC -o .libs/c-interface-bonds.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-symmetry.lo c-interface-build-symmetry.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-morph.cc -fPIC -DPIC -o .libs/c-interface-build-morph.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build.cc -fPIC -DPIC -o .libs/c-interface-build.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-gui.lo c-interface-build-gui.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-symmetry.cc -fPIC -DPIC -o .libs/c-interface-build-symmetry.o In file included from boids.cc:108: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-gui.cc -fPIC -DPIC -o .libs/c-interface-build-gui.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-curlew.lo c-interface-curlew.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-curlew.cc -fPIC -DPIC -o .libs/c-interface-curlew.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-database.lo c-interface-database.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-database.cc -fPIC -DPIC -o .libs/c-interface-database.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-gui.lo c-interface-gui.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-main-chain.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-gui.cc -fPIC -DPIC -o .libs/c-interface-gui.o In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-analysis.cc:34: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-bonds.cc:42: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-side-chain.cc:56: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build.cc:56: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-morph.cc:55: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-symmetry.cc:55: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-gui.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from atom-overlaps.cc:40: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:37, from c-interface-curlew.cc:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-main-chain.cc:63: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-bonds.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from init_coot_as_python_module.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-analysis.cc:36: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-gui.cc:72: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build.cc:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-side-chain.cc:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-morph.cc:65: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-curlew.cc:70: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-gui.cc:59: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-symmetry.cc:64: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from atom-overlaps.cc:39: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from atom-overlaps.cc:42: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-main-chain.cc:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:39, from c-interface-bonds.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-utils.hh:26, from curl-utils.hh:36, from c-interface-gui.cc:70: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-gui.cc:78: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-curlew.cc:63: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void open_cif_dictionary_file_selector_dialog()': c-interface-gui.cc:156:65: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 156 | GtkWidget *aa_hbutton_box = gtk_dialog_get_content_area(GTK_DIALOG(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void fill_remarks_browswer_chooser(GtkWidget*)': c-interface-gui.cc:267:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 267 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_coot_references_button(GtkWidget*)': c-interface-gui.cc:823:47: warning: 'GtkWidget* gtk_dialog_get_header_bar(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 823 | GtkWidget *hbox = gtk_dialog_get_header_bar(GTK_DIALOG(widget)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:174:13: note: declared here 174 | GtkWidget * gtk_dialog_get_header_bar (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_recentre_on_read_pdb_combobox(GtkWidget*)': c-interface-gui.cc:1194:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1194 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1196:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1196 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), 1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void store_window_size(int, GtkWidget*)': c-interface-gui.cc:1317:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1317 | gtk_widget_get_allocation(widget, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_filechooser_filter_button(GtkWidget*, short int)': c-interface-gui.cc:1649:30: warning: 'void gtk_file_chooser_add_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1649 | gtk_file_chooser_add_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1650 | GTK_FILE_FILTER (filterall)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:136:22: note: declared here 136 | void gtk_file_chooser_add_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1651:30: warning: 'void gtk_file_chooser_add_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1651 | gtk_file_chooser_add_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1652 | GTK_FILE_FILTER (filterselect)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:136:22: note: declared here 136 | void gtk_file_chooser_add_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1656:32: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1656 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1657 | GTK_FILE_FILTER (filterselect)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1660:32: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1660 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1661 | GTK_FILE_FILTER (filterall)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_filechooser_extra_filter_button(GtkWidget*, const gchar*, const gchar*)': c-interface-gui.cc:1676:31: warning: 'void gtk_file_chooser_add_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1676 | gtk_file_chooser_add_filter (GTK_FILE_CHOOSER (fileselection), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1677 | GTK_FILE_FILTER (filter)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:136:22: note: declared here 136 | void gtk_file_chooser_add_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void set_refine_params_comboboxes()': c-interface-gui.cc:2115:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2115 | if (cb1) gtk_combo_box_set_active(GTK_COMBO_BOX(cb1), g.refine_params_dialog_geman_mcclure_alpha_combobox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2116:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2116 | if (cb2) gtk_combo_box_set_active(GTK_COMBO_BOX(cb2), g.refine_params_dialog_rama_restraints_weight_combobox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2117:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2117 | if (cb3) gtk_combo_box_set_active(GTK_COMBO_BOX(cb3), g.refine_params_dialog_lennard_jones_epsilon_combobox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2118:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2118 | if (cb4) gtk_combo_box_set_active(GTK_COMBO_BOX(cb4), g.refine_params_dialog_torsions_weight_combox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void fill_chiral_volume_molecule_combobox(GtkWidget*)': c-interface-gui.cc:2180:50: warning: 'GtkWidget* gtk_combo_box_new()' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2180 | GtkWidget *combobox_new = gtk_combo_box_new(); | ~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:74:15: note: declared here 74 | GtkWidget *gtk_combo_box_new (void); | ^~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void pepflips_by_difference_map_dialog()': c-interface-gui.cc:2205:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 2205 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(model_combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2206:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 2206 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(map_combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In lambda function: c-interface-gui.cc:3359:40: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 3359 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(self), &rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'GtkWidget* wrapped_create_show_symmetry_window()': c-interface-gui.cc:3368:68: warning: 'GtkWidget* gtk_color_button_new_with_rgba(const GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 3368 | GtkWidget *colour_button = gtk_color_button_new_with_rgba(&rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:82: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorbutton.h:53:14: note: declared here 53 | GtkWidget * gtk_color_button_new_with_rgba (const GdkRGBA *rgba); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void save_coordinates_using_widget(GtkWidget*)': c-interface-gui.cc:3746:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 3746 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void save_symmetry_coords_from_filechooser(GtkWidget*)': c-interface-gui.cc:3773:43: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 3773 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'GtkWidget* wrapped_create_residue_editor_select_monomer_type_dialog()': c-interface-gui.cc:4475:36: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4475 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(combo_box)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:4484:38: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4484 | gtk_combo_box_text_append_text (GTK_COMBO_BOX_TEXT(combo_box), s.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:4485:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 4485 | gtk_combo_box_set_active(GTK_COMBO_BOX(combo_box), i); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from init_coot_as_python_module.cc:34: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build.cc:74: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-side-chain.cc:72: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-morph.cc:71: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-gui.cc:65: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-symmetry.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-build-gui.cc: In function 'void fill_move_molecule_here_dialog(GtkWidget*)': c-interface-build-gui.cc:248:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 248 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc: In function 'bool renumber_residues_from_widget(GtkWidget*)': c-interface-build-gui.cc:420:64: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 420 | std::string chain_id = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(chain_id_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc: In function 'void mutate_sequence_chain_combobox_changed(GtkWidget*, gpointer)': c-interface-build-gui.cc:914:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 914 | char *atc = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc: In function 'GtkWidget* wrapped_create_fast_ss_search_dialog()': c-interface-build-gui.cc:1617:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1617 | gtk_combo_box_set_active(GTK_COMBO_BOX(helix_temp_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1618:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1618 | gtk_combo_box_set_active(GTK_COMBO_BOX(helix_noaa_combobox), 1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1619:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1619 | gtk_combo_box_set_active(GTK_COMBO_BOX(strand_temp_combobox), 1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1620:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1620 | gtk_combo_box_set_active(GTK_COMBO_BOX(strand_noaa_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1621:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1621 | gtk_combo_box_set_active(GTK_COMBO_BOX(radius_combobox),1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread 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-Wno-unused -std=c++17 -c -o c-interface-gtk2.lo c-interface-gtk2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-gtk2.cc -fPIC -DPIC -o .libs/c-interface-gtk2.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-info.cc -fPIC -DPIC -o .libs/c-interface-info.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-kk.cc -fPIC -DPIC -o .libs/c-interface-kk.o In file included from c-interface-gtk2.cc:54: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-image.lo c-interface-image.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ligands-gui.lo c-interface-ligands-gui.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-image.cc -fPIC -DPIC -o .libs/c-interface-image.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ligands-gui.cc -fPIC -DPIC -o .libs/c-interface-ligands-gui.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-info.cc:64: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-info.cc:67: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-gtk2.cc:59: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ligands.lo c-interface-ligands.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ligands.cc -fPIC -DPIC -o .libs/c-interface-ligands.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-maps.lo c-interface-maps.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-info.cc:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-maps.cc -fPIC -DPIC -o .libs/c-interface-maps.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mmdb.lo c-interface-mmdb.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mmdb.cc -fPIC -DPIC -o .libs/c-interface-mmdb.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-kk.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface.h:82, from c-interface-gtk2.cc:56: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' c-interface-gtk2.cc: In function 'gboolean fileselection_sort_button_foreach_func(GtkTreeModel*, GtkTreePath*, GtkTreeIter*, gpointer)': c-interface-gtk2.cc:101:23: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 101 | gtk_tree_model_get (model, iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 102 | 0, &file_name, | ~~~~~~~~~~~~~~ 103 | -1); | ~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc:104:43: warning: 'char* gtk_tree_path_to_string(GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 104 | tree_path_str = gtk_tree_path_to_string(path); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:209:14: note: declared here 209 | char *gtk_tree_path_to_string (GtkTreePath *path); | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc: In function 'gboolean fileselection_filter_button_foreach_func(GtkTreeModel*, GtkTreePath*, GtkTreeIter*, gpointer)': c-interface-gtk2.cc:143:23: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 143 | gtk_tree_model_get (model, iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 144 | 0, &file_name, | ~~~~~~~~~~~~~~ 145 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc:151:34: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 151 | if (gtk_tree_model_get_iter(model, iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc:154:31: warning: 'gboolean gtk_list_store_remove(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 154 | gtk_list_store_remove(GTK_LIST_STORE(model), iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:95:15: note: declared here 95 | gboolean gtk_list_store_remove (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ligands-gui.cc:51: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ligands.cc:46: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mogul.lo c-interface-mogul.cc In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-maps.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mogul.cc -fPIC -DPIC -o .libs/c-interface-mogul.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mogul-scripting.lo c-interface-mogul-scripting.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mogul-scripting.cc -fPIC -DPIC -o .libs/c-interface-mogul-scripting.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mutate.lo c-interface-mutate.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from c-interface-image.cc:38: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-ligands-gui.cc:54: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from c-interface-image.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-maps.cc:52: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-ligands.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from c-interface-mogul.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mutate.cc -fPIC -DPIC -o .libs/c-interface-mutate.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from c-interface-mogul-scripting.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-mmdb.cc:40: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-image.cc:47: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ c-interface-info.cc: In function 'PyObject* get_pointer_position_frac_py()': c-interface-info.cc:2631:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2631 | std::pair xy = g.get_pointer_position_frac(); | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ncs.lo c-interface-ncs.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ncs.cc -fPIC -DPIC -o .libs/c-interface-ncs.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-network.lo c-interface-network.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-network.cc -fPIC -DPIC -o .libs/c-interface-network.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from c-interface-ligands-gui.cc:57: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-mogul.cc:33: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from c-interface-maps.cc:60: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-ligands.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-mutate.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ncs.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:37, from c-interface-network.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-image.cc: In function 'GtkWidget* get_image_widget_for_comp_id(const std::string&, int)': c-interface-image.cc:132:45: warning: 'GtkWidget* gtk_image_new_from_pixbuf(GdkPixbuf*)' is deprecated: Use 'gtk_image_new_from_paintable' instead [-Wdeprecated-declarations] 132 | r = gtk_image_new_from_pixbuf(pixbuf); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkentry.h:40, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/gtkimage.h:78:12: note: declared here 78 | GtkWidget* gtk_image_new_from_pixbuf (GdkPixbuf *pixbuf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'GtkCellRenderer* coot::mogul_results_add_cell_renderer(GtkTreeView*, GtkTreeStore*, const std::string&, int, int)': c-interface-mogul.cc:218:63: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 218 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:219:56: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 219 | GtkTreeViewColumn *column = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:220:34: warning: 'void gtk_tree_view_column_set_title(GtkTreeViewColumn*, const char*)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 220 | gtk_tree_view_column_set_title(column, column_title.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:165:25: note: declared here 165 | void gtk_tree_view_column_set_title (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:221:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 221 | gtk_tree_view_append_column(tree_view, column); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:222:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 222 | gtk_tree_view_column_pack_start(column, cell_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:223:38: warning: 'void gtk_tree_view_column_add_attribute(GtkTreeViewColumn*, GtkCellRenderer*, const char*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 223 | gtk_tree_view_column_add_attribute(column, cell_renderer, "text", pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:101:25: note: declared here 101 | void gtk_tree_view_column_add_attribute (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:225:43: warning: 'void gtk_tree_view_column_set_sort_column_id(GtkTreeViewColumn*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 225 | gtk_tree_view_column_set_sort_column_id(column, pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:201:25: note: declared here 201 | void gtk_tree_view_column_set_sort_column_id (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::fill_mogul_bonds_tab(GtkTreeView*, GtkWidget*, const mogul&, mmdb::Residue*)': c-interface-mogul.cc:289:55: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 289 | GtkTreeStore *tree_store_bonds = gtk_tree_store_new(8, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 | G_TYPE_INT, | ~~~~~~~~~~~ 291 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 | G_TYPE_STRING, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:292: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:295:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 295 | gtk_tree_view_set_model(tv_bonds, GTK_TREE_MODEL(tree_store_bonds)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:320:37: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 320 | gtk_tree_store_append(tree_store_bonds, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:321:34: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 321 | gtk_tree_store_set(tree_store_bonds, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 | 0, atom_name_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 323 | 1, atom_name_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 324 | 2, m[i].counts, | ~~~~~~~~~~~~~~~ 325 | 3, m_value.c_str(), | ~~~~~~~~~~~~~~~~~~~ 326 | 4, m_mean.c_str(), | ~~~~~~~~~~~~~~~~~~ 327 | 5, m_median.c_str(), | ~~~~~~~~~~~~~~~~~~~~ 328 | 6, m_std_dev.c_str(), | ~~~~~~~~~~~~~~~~~~~~~ 329 | 7, m[i].z, | ~~~~~~~~~~ 330 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:346:61: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 346 | GtkTreeSelection *sel_bonds = gtk_tree_view_get_selection(GTK_TREE_VIEW(mogul_bonds_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::on_mogul_bonds_selection_changed(GtkTreeSelection*, gpointer)': c-interface-mogul.cc:362:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 362 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:290: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:368:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 368 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 369 | 0, &atom_id_1, | ~~~~~~~~~~~~~~ 370 | 1, &atom_id_2, | ~~~~~~~~~~~~~~ 371 | 2, &value, | ~~~~~~~~~~ 372 | 3, &mean, | ~~~~~~~~~ 373 | 4, &median, | ~~~~~~~~~~~ 374 | 5, &esd, | ~~~~~~~~ 375 | 6, &z, | ~~~~~~ 376 | -1); | ~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::fill_mogul_angles_tab(GtkTreeView*, GtkWidget*, const mogul&, mmdb::Residue*)': c-interface-mogul.cc:427:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 427 | GtkTreeStore *tree_store_angles = gtk_tree_store_new(9, | ~~~~~~~~~~~~~~~~~~^~~ 428 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 | G_TYPE_INT, | ~~~~~~~~~~~ 430 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 | G_TYPE_STRING, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:434:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 434 | gtk_tree_view_set_model(tv_angles, GTK_TREE_MODEL(tree_store_angles)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:463:40: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 463 | gtk_tree_store_append(tree_store_angles, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:464:37: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 464 | gtk_tree_store_set(tree_store_angles, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 | 0, atom_name_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 466 | 1, atom_name_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 467 | 2, atom_name_3.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 468 | 3, m[i].counts, | ~~~~~~~~~~~~~~~ 469 | 4, m_value.c_str(), | ~~~~~~~~~~~~~~~~~~~ 470 | 5, m_mean.c_str(), | ~~~~~~~~~~~~~~~~~~ 471 | 6, m_median.c_str(), | ~~~~~~~~~~~~~~~~~~~~ 472 | 7, m_std_dev.c_str(), | ~~~~~~~~~~~~~~~~~~~~~ 473 | 8, m[i].z, | ~~~~~~~~~~ 474 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:492:62: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 492 | GtkTreeSelection *sel_angles = gtk_tree_view_get_selection(GTK_TREE_VIEW(mogul_angles_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::on_mogul_angles_selection_changed(GtkTreeSelection*, gpointer)': c-interface-mogul.cc:507:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 507 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:515:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 515 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 516 | 0, &atom_id_1, | ~~~~~~~~~~~~~~ 517 | 1, &atom_id_2, | ~~~~~~~~~~~~~~ 518 | 2, &atom_id_3, | ~~~~~~~~~~~~~~ 519 | 3, &value, | ~~~~~~~~~~ 520 | 4, &mean, | ~~~~~~~~~ 521 | 5, &median, | ~~~~~~~~~~~ 522 | 6, &esd, | ~~~~~~~~ 523 | 7, &z, | ~~~~~~ 524 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::fill_mogul_torsions_tab(GtkTreeView*, GtkWidget*, const mogul&, mmdb::Residue*)': c-interface-mogul.cc:591:58: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 591 | GtkTreeStore *tree_store_torsions = gtk_tree_store_new(6, | ~~~~~~~~~~~~~~~~~~^~~ 592 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 | G_TYPE_FLOAT, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:597:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 597 | gtk_tree_view_set_model(tv_torsions, GTK_TREE_MODEL(tree_store_torsions)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:622:31: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 622 | gtk_tree_store_append(tree_store_torsions, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:623:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 623 | gtk_tree_store_set(tree_store_torsions, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 | 0, atom_name_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 625 | 1, atom_name_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 626 | 2, atom_name_3.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 627 | 3, atom_name_4.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 628 | 4, m[i].value, | ~~~~~~~~~~~~~~ 629 | 5, m[i].dmin, | ~~~~~~~~~~~~~ 630 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:641:62: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 641 | GtkTreeSelection *sel_angles = gtk_tree_view_get_selection(GTK_TREE_VIEW(mogul_torsions_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::on_mogul_torsions_selection_changed(GtkTreeSelection*, gpointer)': c-interface-mogul.cc:655:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 655 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:663:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 663 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 664 | 0, &atom_id_1, | ~~~~~~~~~~~~~~ 665 | 1, &atom_id_2, | ~~~~~~~~~~~~~~ 666 | 2, &atom_id_3, | ~~~~~~~~~~~~~~ 667 | 3, &atom_id_4, | ~~~~~~~~~~~~~~ 668 | 4, &value, | ~~~~~~~~~~ 669 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-network.cc:52: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-nucleotides.lo c-interface-nucleotides.cc In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-ncs.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-nucleotides.cc -fPIC -DPIC -o .libs/c-interface-nucleotides.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-mutate.cc:44: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-mutate.cc:58: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-pisa.lo c-interface-pisa.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-pisa.cc -fPIC -DPIC -o .libs/c-interface-pisa.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-pisa-gui.lo c-interface-pisa-gui.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-network.cc:35: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-network.cc: In function 'PyObject* curl_progress_info_py(const char*)': c-interface-network.cc:427:13: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 427 | info = CURLINFO_CONTENT_LENGTH_DOWNLOAD; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-info.h:138: /usr/include/aarch64-linux-gnu/curl/curl.h:2897:3: note: declared here 2897 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-network.cc:435:13: warning: 'CURLINFO_SIZE_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_SIZE_DOWNLOAD_T [-Wdeprecated-declarations] 435 | info = CURLINFO_SIZE_DOWNLOAD; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/aarch64-linux-gnu/curl/curl.h:2880:3: note: declared here 2880 | CURLINFO_SIZE_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-pisa-gui.cc -fPIC -DPIC -o .libs/c-interface-pisa-gui.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-ncs.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-nucleotides.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-preferences.lo c-interface-preferences.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-python.lo c-interface-python.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-refine.lo c-interface-refine.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-preferences.cc -fPIC -DPIC -o .libs/c-interface-preferences.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-python.cc -fPIC -DPIC -o .libs/c-interface-python.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-refine.cc -fPIC -DPIC -o .libs/c-interface-refine.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ c-interface-ncs.cc: In function 'std::vector make_ncs_maps(int, int)': c-interface-ncs.cc:954:115: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 954 | graphics_info_t::molecules[imol_model].chain_centre_and_radius(ncs_ghosts[ighst].target_chain_id); | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-pisa.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cc-interface.hh:39, from c-interface-nucleotides.cc:59: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-residues.lo c-interface-residues.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-refmac.lo c-interface-refmac.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-residues.cc -fPIC -DPIC -o .libs/c-interface-residues.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-refmac.lo simple-refmac.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-refmac.cc -fPIC -DPIC -o .libs/c-interface-refmac.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-pisa-gui.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from c-interface-python.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-refmac.cc -fPIC -DPIC -o .libs/simple-refmac.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-pisa.cc:32: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-scm.lo c-interface-scm.cc In file included from cc-interface.hh:39, from c-interface-pisa.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-scm.cc -fPIC -DPIC -o .libs/c-interface-scm.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-preferences.cc:64: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:37, from c-interface-refmac.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-python.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from ../coot-utils/glyco-tree.hh:32, from c-interface-residues.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-pisa-gui.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-pisa-gui.cc:35: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-pisa-gui.cc: In function 'void coot::pisa_interfaces_gui(const std::vector&)': c-interface-pisa-gui.cc:53:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 53 | gtk_tree_store_new (12, G_TYPE_INT, G_TYPE_INT, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 | G_TYPE_FLOAT, G_TYPE_FLOAT, G_TYPE_FLOAT, G_TYPE_INT, G_TYPE_INT, G_TYPE_INT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | G_TYPE_INT); | ~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:292: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:58:30: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 58 | gtk_tree_view_set_model(tv_interfaces, GTK_TREE_MODEL(tree_store_interfaces)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:60:31: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 60 | gtk_tree_store_append(tree_store_interfaces, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:61:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 61 | gtk_tree_store_set(tree_store_interfaces, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 | 0, gui_info[i].imol_1, | ~~~~~~~~~~~~~~~~~~~~~~ 63 | 1, gui_info[i].imol_2, | ~~~~~~~~~~~~~~~~~~~~~~ 64 | 2, gui_info[i].chain_id_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | 3, gui_info[i].chain_id_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | 4, gui_info[i].symop.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 | 5, gui_info[i].interface_area, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | 6, gui_info[i].interface_solv_en, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | 7, gui_info[i].interface_pvalue, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | 8, gui_info[i].n_h_bonds, | ~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | 9, gui_info[i].n_salt_bridges, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | 10, gui_info[i].n_ss_bonds, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | 11, gui_info[i].n_cov_bonds, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:89:58: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 89 | GtkTreeSelection *sel = gtk_tree_view_get_selection(GTK_TREE_VIEW(treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc: In function 'void coot::add_pisa_interfaces_cell_renderer(GtkTreeView*, const std::string&, int)': c-interface-pisa-gui.cc:107:63: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 107 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:108:56: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 108 | GtkTreeViewColumn *column = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:109:34: warning: 'void gtk_tree_view_column_set_title(GtkTreeViewColumn*, const char*)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 109 | gtk_tree_view_column_set_title(column, column_title.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:165:25: note: declared here 165 | void gtk_tree_view_column_set_title (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:110:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 110 | gtk_tree_view_append_column(tree_view, column); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:111:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 111 | gtk_tree_view_column_pack_start(column, cell_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:112:38: warning: 'void gtk_tree_view_column_add_attribute(GtkTreeViewColumn*, GtkCellRenderer*, const char*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 112 | gtk_tree_view_column_add_attribute(column, cell_renderer, "text", pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:101:25: note: declared here 101 | void gtk_tree_view_column_add_attribute (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:114:43: warning: 'void gtk_tree_view_column_set_sort_column_id(GtkTreeViewColumn*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 114 | gtk_tree_view_column_set_sort_column_id(column, pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:201:25: note: declared here 201 | void gtk_tree_view_column_set_sort_column_id (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc: In function 'void coot::on_pisa_interfaces_seletion_changed(GtkTreeSelection*, gpointer)': c-interface-pisa-gui.cc:135:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 135 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:290: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:142:26: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 142 | gtk_tree_model_get (model, &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 143 | 0, &imol_1, | ~~~~~~~~~~~ 144 | 1, &imol_2, | ~~~~~~~~~~~ 145 | 2, &chain_id_1, | ~~~~~~~~~~~~~~~ 146 | 3, &chain_id_2, | ~~~~~~~~~~~~~~~ 147 | -1); | ~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-refine.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from c-interface-scm.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sequence.lo c-interface-sequence.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-refmac.cc:33: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sequence.cc -fPIC -DPIC -o .libs/c-interface-sequence.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-residues.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from simple-refmac.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-preferences.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-preferences.cc: In function 'void show_preferences()': c-interface-preferences.cc:102:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 102 | gtk_combo_box_text_append_text(combobox, s.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc:118:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 118 | gtk_combo_box_text_append_text(combobox, fonts[j].c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc: In function 'void update_preference_gui()': c-interface-preferences.cc:291:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 291 | gtk_combo_box_set_active(GTK_COMBO_BOX(w), ivalue); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc: In lambda function: c-interface-preferences.cc:473:49: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 473 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(self), &rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc: In function 'void update_preference_gui()': c-interface-preferences.cc:484:77: warning: 'GtkWidget* gtk_color_button_new_with_rgba(const GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 484 | GtkWidget *colour_button = gtk_color_button_new_with_rgba(&bg_colour); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:82: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorbutton.h:53:14: note: declared here 53 | GtkWidget * gtk_color_button_new_with_rgba (const GdkRGBA *rgba); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sfs.lo c-interface-sfs.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-scm.cc:35: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-refine.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sfs.cc -fPIC -DPIC -o .libs/c-interface-sfs.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sharpen.lo c-interface-sharpen.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sharpen.cc -fPIC -DPIC -o .libs/c-interface-sharpen.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30, from c-interface-residues.cc:39: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from c-interface-sfs.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-sequence.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:39, from simple-refmac.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-superpose.lo c-interface-superpose.cc simple-refmac.cc: In function 'void wrapped_create_simple_refmac_dialog()': simple-refmac.cc:63:37: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 63 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox_file), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 | g.mtz_file_for_refmac.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ simple-refmac.cc:65:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 65 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox_file), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-superpose.cc -fPIC -DPIC -o .libs/c-interface-superpose.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-validate.lo c-interface-validate.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-view.lo c-interface-view.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-validate.cc -fPIC -DPIC -o .libs/c-interface-validate.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-view.cc -fPIC -DPIC -o .libs/c-interface-view.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-widgets.lo c-interface-widgets.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-waters.lo c-interface-waters.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-widgets.cc -fPIC -DPIC -o .libs/c-interface-widgets.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-sequence.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-waters.cc -fPIC -DPIC -o .libs/c-interface-waters.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-validate.cc:49: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-sharpen.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from /usr/include/c++/14/istream:41, from /usr/include/c++/14/sstream:40, from ../validation-graphs/../geometry/residue-and-atom-specs.hh:26, from ../validation-graphs/residue-validation-information.hh:30, from ../validation-graphs/validation-information.hh:30, from graphics-info.h:32: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(const void*) [with _CharT = char; _Traits = std::char_traits]', inlined from 'void update_preference_gui()' at c-interface-preferences.cc:452:86: /usr/include/c++/14/ostream:299:25: warning: 'colour_button' may be used uninitialized [-Wmaybe-uninitialized] 299 | { return _M_insert(__p); } | ~~~~~~~~~^~~~~ c-interface-preferences.cc: In function 'void update_preference_gui()': c-interface-preferences.cc:225:14: note: 'colour_button' was declared here 225 | GtkWidget *colour_button; | ^~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-waters-gui.lo c-interface-waters-gui.cc In file included from cc-interface.hh:37, from c-interface-view.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-waters-gui.cc -fPIC -DPIC -o .libs/c-interface-waters-gui.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface.lo c-interface.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface.cc -fPIC -DPIC -o .libs/c-interface.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-validate.cc:52: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-superpose.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-test.lo c-interface-test.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-waters.cc:47: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-test.cc -fPIC -DPIC -o .libs/c-interface-test.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-view.cc:34: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-alignment.lo cc-interface-alignment.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-widgets.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-graphics.lo cc-interface-graphics.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-alignment.cc -fPIC -DPIC -o .libs/cc-interface-alignment.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-waters-gui.cc:46: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-graphics.cc -fPIC -DPIC -o .libs/cc-interface-graphics.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface.cc:91: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from c-interface.cc:96: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-waters.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-widgets.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:39, from c-interface-validate.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-validate.cc: In function 'GtkWidget* wrapped_create_check_waters_dialog()': c-interface-validate.cc:136:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 136 | gtk_combo_box_set_active(GTK_COMBO_BOX(check_waters_action_combobox), 0); // "Check" | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-validate.cc:143:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 143 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-validate.cc: In function 'void do_check_waters_by_widget(GtkWidget*)': c-interface-validate.cc:294:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 294 | gchar *at = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(action_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-superpose.cc:46: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-merge.lo cc-interface-merge.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-waters-gui.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-merge.cc -fPIC -DPIC -o .libs/cc-interface-merge.o In file included from cc-interface.hh:37, from cc-interface-graphics.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-molecular-representation.lo cc-interface-molecular-representation.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface.cc:102: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-molecular-representation.cc -fPIC -DPIC -o .libs/cc-interface-molecular-representation.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-alignment.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-test.cc:89: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from c-interface-test.cc:94: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cc-interface-graphics.cc:31: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-widgets.cc:34: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc: In function 'void remarks_dialog(int)': c-interface-widgets.cc:164:42: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 164 | GtkWidget *d = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ c-interface-widgets.cc:169:58: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 169 | GtkWidget *vbox = gtk_dialog_get_content_area(GTK_DIALOG(d)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc:250:37: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 250 | gtk_dialog_add_button(GTK_DIALOG(d), "Close", GTK_RESPONSE_CLOSE); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc: In function 'void simple_text_dialog(const std::string&, const std::string&, int, int)': c-interface-widgets.cc:608:36: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 608 | GtkWidget *d = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ c-interface-widgets.cc:612:52: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 612 | GtkWidget *vbox = gtk_dialog_get_content_area(GTK_DIALOG(d)); // new method to get vbox fromm dialog | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc:634:54: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 634 | GtkWidget *close_button = gtk_dialog_add_button(GTK_DIALOG(d), "Close", 2); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-widgets.cc:741: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from cc-interface.hh:39, from c-interface-waters.cc:66: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ c-interface.cc: In function 'void mono_mode()': c-interface.cc:1174:53: warning: 'int gtk_widget_get_allocated_width(GtkWidget*)' is deprecated: Use 'gtk_widget_get_width' instead [-Wdeprecated-declarations] 1174 | int x_size = gtk_widget_get_allocated_width(gl_widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:472:23: note: declared here 472 | int gtk_widget_get_allocated_width (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc:1175:54: warning: 'int gtk_widget_get_allocated_height(GtkWidget*)' is deprecated: Use 'gtk_widget_get_height' instead [-Wdeprecated-declarations] 1175 | int y_size = gtk_widget_get_allocated_height(gl_widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:474:23: note: declared here 474 | int gtk_widget_get_allocated_height (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void make_image_povray(const char*)': c-interface.cc:4500:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4500 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void make_image_povray_py(const char*)': c-interface.cc:4524:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4524 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void sequence_view(int)': c-interface.cc:7653:57: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 7653 | GtkStyleContext *sc = gtk_widget_get_style_context(button); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc:7654:34: warning: 'void gtk_style_context_add_class(GtkStyleContext*, const char*)' is deprecated [-Wdeprecated-declarations] 7654 | gtk_style_context_add_class(sc, "circular"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:267: /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:90:10: note: declared here 90 | void gtk_style_context_add_class (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-test.cc:102: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-merge.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-molecular-representation.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-molecular-symmetry.lo cc-interface-molecular-symmetry.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from cc-interface-alignment.cc:43: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-molecular-symmetry.cc -fPIC -DPIC -o .libs/cc-interface-molecular-symmetry.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from cc-interface-molecular-representation.cc:39: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from c-interface-test.cc:438: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from cc-interface-merge.cc:42: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from cc-interface.hh:37, from cc-interface-molecular-symmetry.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-scripting.lo cc-interface-scripting.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-scripting.cc -fPIC -DPIC -o .libs/cc-interface-scripting.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-map-utils.lo cc-interface-map-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE 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1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 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-Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-map-utils.cc -fPIC -DPIC -o .libs/cc-interface-map-utils.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-user-defined-atom-colours.lo cc-interface-user-defined-atom-colours.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-png.cc -fPIC -DPIC -o .libs/cc-interface-png.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-user-defined-atom-colours.cc -fPIC -DPIC -o .libs/cc-interface-user-defined-atom-colours.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cfc.lo cfc.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o change-dir.lo change-dir.cc c-interface-test.cc: In function 'PyObject* test_function_py(PyObject*, PyObject*)': c-interface-test.cc:1569:31: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1569 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cfc.cc -fPIC -DPIC -o .libs/cfc.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c change-dir.cc -fPIC -DPIC -o .libs/change-dir.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cc-interface-molecular-symmetry.cc:37: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cmtz-interface.lo cmtz-interface.cc In file included from change-dir.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o command-line.lo command-line.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cmtz-interface.cc -fPIC -DPIC -o .libs/cmtz-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c command-line.cc -fPIC -DPIC -o .libs/command-line.o In file included from cc-interface-png.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o command-line-extern.lo command-line-extern.cc In file included from cc-interface.hh:37, from cc-interface-user-defined-atom-colours.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c command-line-extern.cc -fPIC -DPIC -o .libs/command-line-extern.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-application.lo coot-application.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-application.cc -fPIC -DPIC -o .libs/coot-application.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-scripting.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cc-interface-user-defined-atom-colours.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-map-utils.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cmtz-interface.cc:53: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cc-interface-png.cc:55: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cmtz-interface.cc:58: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from command-line.cc:61: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-colour.lo coot-colour.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-colour.cc -fPIC -DPIC -o .libs/coot-colour.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface.h:82, from cc-interface-user-defined-atom-colours.cc:26: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from command-line-extern.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-align.lo coot-align.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, from cfc.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:39, from cc-interface-map-utils.cc:31: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-align.cc -fPIC -DPIC -o .libs/coot-align.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from coot-application.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30, from cc-interface-png.cc:53: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cfc.cc:45: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from coot-align.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cmtz-interface.cc:43: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc: In function 'void my_combo_box_text_add_items(GtkComboBox*, const std::vector&, int)': cmtz-interface.cc:541:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 541 | GtkListStore *store = gtk_list_store_new(1, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ cmtz-interface.cc:545:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 545 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:546:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 546 | gtk_list_store_set(store, &iter, 0, col_lab.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ cmtz-interface.cc:553:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 553 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:554:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 554 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox), renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:556:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 556 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:559:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 559 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), active_label_index); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-nomenclature.lo coot-nomenclature.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from command-line.cc:56: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-nomenclature.cc -fPIC -DPIC -o .libs/coot-nomenclature.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:39, from command-line.cc:68: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ coot-application.cc: In function 'int start_using_application(int, char**)': coot-application.cc:103:69: warning: 'G_APPLICATION_FLAGS_NONE' is deprecated: Use 'G_APPLICATION_DEFAULT_FLAGS' instead [-Wdeprecated-declarations] 103 | GtkApplication *app = gtk_application_new ("org.emsley.coot", G_APPLICATION_FLAGS_NONE); | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gio/giotypes.h:30, from /usr/include/glib-2.0/gio/gio.h:28, from /usr/include/gtk-4.0/gtk/css/gtkcsssection.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:36, from /usr/include/gtk-4.0/gtk/gtk.h:29: /usr/include/glib-2.0/gio/gioenums.h:1545:3: note: declared here 1545 | G_APPLICATION_FLAGS_NONE GIO_DEPRECATED_ENUMERATOR_IN_2_74_FOR(G_APPLICATION_DEFAULT_FLAGS), | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o coot-glue-gtk2.lo coot-glue-gtk2.c In file included from cc-interface.hh:39, from command-line-extern.cc:49: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c coot-glue-gtk2.c -fPIC -DPIC -o .libs/coot-glue-gtk2.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-glue-gtk2-python.lo coot-glue-gtk2-python.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-hydrogens.lo coot-hydrogens.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-glue-gtk2-python.cc -fPIC -DPIC -o .libs/coot-glue-gtk2-python.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-hydrogens.cc -fPIC -DPIC -o .libs/coot-hydrogens.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-phi-psi.lo coot-phi-psi.cc In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cfc-widgets.hh:28, from cfc.cc:40: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-phi-psi.cc -fPIC -DPIC -o .libs/coot-phi-psi.o In file included from ../ideal/simple-restraint.hh:162, from coot-nomenclature.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_pythonmodule.lo coot_pythonmodule.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_pythonmodule.cc -fPIC -DPIC -o .libs/coot_pythonmodule.o ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-setup-python.lo coot-setup-python.cc swig -o coot_wrap_guile_pre.cc -DUSE_MOLECULES_TO_TRIANGLES -DCOOT_USE_GTK2_INTERFACE -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_LIBCURL -I../src -I.. -guile -c++ ../src/coot.i /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o curlew-gtk4.lo curlew-gtk4.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-setup-python.cc -fPIC -DPIC -o .libs/coot-setup-python.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o draw.lo draw.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c curlew-gtk4.cc -fPIC -DPIC -o .libs/curlew-gtk4.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c draw.cc -fPIC -DPIC -o .libs/draw.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-tick-function.lo graphics-info-tick-function.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-tick-function.cc -fPIC -DPIC -o .libs/graphics-info-tick-function.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-hydrogens.cc:28: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o drag-and-drop.lo drag-and-drop.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o draw-generic-display-objects.lo draw-generic-display-objects.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c drag-and-drop.cc -fPIC -DPIC -o .libs/drag-and-drop.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c draw-generic-display-objects.cc -fPIC -DPIC -o .libs/draw-generic-display-objects.o In file included from command-arg.hh:33, from graphics-info.h:66, from coot_pythonmodule.cc:123: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dynamic-validation.lo dynamic-validation.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o eyes.lo eyes.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:37, from coot-setup-python.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dynamic-validation.cc -fPIC -DPIC -o .libs/dynamic-validation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c eyes.cc -fPIC -DPIC -o .libs/eyes.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o event-controller-callbacks.lo event-controller-callbacks.cc In file included from curlew-gtk4.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fit-loop-gui.lo fit-loop-gui.cc In file included from draw-generic-display-objects.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c event-controller-callbacks.cc -fPIC -DPIC -o .libs/event-controller-callbacks.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fit-loop-gui.cc -fPIC -DPIC -o .libs/fit-loop-gui.o In file included from cc-interface.hh:37, from drag-and-drop.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from draw.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flev.lo flev.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from coot-setup-python.cc:41: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flev.cc -fPIC -DPIC -o .libs/flev.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from curlew-gtk4.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-tick-function.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from coot_pythonmodule.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from draw-generic-display-objects.cc:38: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o framebuffer.lo framebuffer.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from dynamic-validation.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c framebuffer.cc -fPIC -DPIC -o .libs/framebuffer.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from event-controller-callbacks.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from coot-setup-python.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ coot-setup-python.cc: In function 'void setup_python_basic(int, char**)': coot-setup-python.cc:71:17: warning: 'void PySys_SetArgv(int, wchar_t**)' is deprecated [-Wdeprecated-declarations] 71 | PySys_SetArgv(argc, _argv); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/python3.13/Python.h:125, from coot-setup-python.cc:24: /usr/include/python3.13/sysmodule.h:10:38: note: declared here 10 | Py_DEPRECATED(3.11) PyAPI_FUNC(void) PySys_SetArgv(int, wchar_t **); | ^~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from fit-loop-gui.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from probe-clash-score.hh:32, from ligand-check.hh:30, from c-interface-ligands.hh:34, from flev.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from curlew-gtk4.hh:29, from curlew-gtk4.cc:29: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o old-generic-display-object.lo old-generic-display-object.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-tick-function.cc:38: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c old-generic-display-object.cc -fPIC -DPIC -o .libs/old-generic-display-object.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ draw-generic-display-objects.cc: In static member function 'static void graphics_info_t::draw_generic_objects(unsigned int)': draw-generic-display-objects.cc:213:47: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 213 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gaussian-surface.lo gaussian-surface.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o generic-objects.lo generic-objects.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gaussian-surface.cc -fPIC -DPIC -o .libs/gaussian-surface.o In file included from c-interface-ligands.hh:35: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from flev.cc:39: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c generic-objects.cc -fPIC -DPIC -o .libs/generic-objects.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from event-controller-callbacks.hh:29, from event-controller-callbacks.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In lambda function: event-controller-callbacks.cc:168:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 168 | gtk_widget_get_allocation(gl_area, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In member function 'void graphics_info_t::do_drag_pan_gtk4(GtkWidget*, double, double)': event-controller-callbacks.cc:487:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 487 | gtk_widget_get_allocation(widget, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In member function 'void graphics_info_t::do_drag_pan_gtk3(GtkWidget*, double, double)': event-controller-callbacks.cc:561:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 561 | gtk_widget_get_allocation(widget, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In member function 'void graphics_info_t::on_glarea_motion(GtkEventControllerMotion*, gdouble, gdouble, gpointer)': event-controller-callbacks.cc:812:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 812 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o geometry-graphs.lo geometry-graphs.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c geometry-graphs.cc -fPIC -DPIC -o .libs/geometry-graphs.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-residue.lo get-residue.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-residue.cc -fPIC -DPIC -o .libs/get-residue.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from flev.cc:41: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from widget-from-builder.hh:31, from fit-loop-gui.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ fit-loop-gui.cc: In function 'void fit_loop_using_dialog()': fit-loop-gui.cc:184:64: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 184 | std::string chain_id = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(chain_combobox_text)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, from gaussian-surface.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cc-interface.hh:37, from generic-objects.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from gaussian-surface.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from old-generic-display-object.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-monomer.lo get-monomer.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gl-rama-plot.lo gl-rama-plot.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-monomer.cc -fPIC -DPIC -o .libs/get-monomer.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gl-rama-plot.cc -fPIC -DPIC -o .libs/gl-rama-plot.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from generic-objects.cc:50: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from get-residue.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o globjects.lo globjects.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o globularize.lo globularize.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c globjects.cc -fPIC -DPIC -o .libs/globjects.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info.lo graphics-info.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c globularize.cc -fPIC -DPIC -o .libs/globularize.o In file included from cc-interface.hh:39, from flev.cc:57: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from gl-rama-plot.cc:329: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ gl-rama-plot.cc: In member function 'std::pair, glm::vec<2, float, glm::packed_highp> > gl_rama_plot_t::get_munged_offset_and_scale(screen_position_origins_t, const glm::vec2&, float, float, int, int) const': gl-rama-plot.cc:418:82: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 418 | int glarea_width, int glarea_height) const { | ^~~~~ In file included from get-monomer.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info.cc -fPIC -DPIC -o .libs/graphics-info.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-defines.lo graphics-info-defines.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-defines.cc -fPIC -DPIC -o .libs/graphics-info-defines.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from generic-objects.cc:40: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-defines-gtk4.lo graphics-info-defines-gtk4.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-defines-gtk4.cc -fPIC -DPIC -o .libs/graphics-info-defines-gtk4.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from get-monomer.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-draw.lo graphics-info-draw.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-draw.cc -fPIC -DPIC -o .libs/graphics-info-draw.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info.cc:64: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-draw-models.lo graphics-info-draw-models.cc In file included from command-arg.hh:33, from graphics-info.h:66, from globularize.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-draw-models.cc -fPIC -DPIC -o .libs/graphics-info-draw-models.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from get-monomer.cc:34: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info.cc:72: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-graphs.lo graphics-info-graphs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-graphs.cc -fPIC -DPIC -o .libs/graphics-info-graphs.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-defines.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-defines-gtk4.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-gui.lo graphics-info-gui.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-init.lo graphics-info-init.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-gui.cc -fPIC -DPIC -o .libs/graphics-info-gui.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-init.cc -fPIC -DPIC -o .libs/graphics-info-init.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-draw-models.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-draw.cc:48: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info.cc:43: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from graphics-info.cc:97: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-graphs.cc:51: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-graphs.cc:60: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-draw.cc:43: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw-models.cc: In static member function 'static void graphics_info_t::draw_models_for_ssao()': graphics-info-draw-models.cc:37:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 37 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw-models.cc: In static member function 'static void graphics_info_t::draw_molecules_for_ssao()': graphics-info-draw-models.cc:58:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 58 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-gui.cc:63: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info-draw.cc: In static member function 'static glm::mat4 graphics_info_t::get_molecule_mvp(bool)': graphics-info-draw.cc:632:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 632 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static glm::vec4 graphics_info_t::unproject(float)': graphics-info-draw.cc:722:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 722 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_intermediate_atoms(unsigned int)': graphics-info-draw.cc:1041:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1041 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In lambda function: graphics-info-draw.cc:1665:107: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 1665 | return std::pair(offset_rel, scales_new); | ^ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_refinement_dialog_arrow_tab()': graphics-info-draw.cc:1678:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1678 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_colour_bar()': graphics-info-draw.cc:1712:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1712 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_meshed_generic_display_object_meshes(unsigned int)': graphics-info-draw.cc:2222:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 2222 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_molecules_other_meshes(unsigned int)': graphics-info-draw.cc:2380:47: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 2380 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'void graphics_info_t::setup_hud_geometry_bars()': graphics-info-draw.cc:3020:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3020 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_buttons()': graphics-info-draw.cc:3240:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3240 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_ramachandran_plot()': graphics-info-draw.cc:3304:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3304 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In lambda function: graphics-info-draw.cc:3345:67: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3345 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'void graphics_info_t::show_accept_reject_hud_buttons()': graphics-info-draw.cc:3517:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3517 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'void graphics_info_t::reset_hud_buttons_size_and_position()': graphics-info-draw.cc:3629:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3629 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static float graphics_info_t::get_x_base_for_hud_geometry_bars()': graphics-info-draw.cc:3645:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3645 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_geometry_bars()': graphics-info-draw.cc:3670:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3670 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'std::pair graphics_info_t::check_if_hud_bar_moused_over_or_act_on_hud_bar_clicked(double, double, bool)': graphics-info-draw.cc:4008:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4008 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'bool graphics_info_t::check_if_hud_button_moused_over_or_act_on_hit(double, double, bool, bool)': graphics-info-draw.cc:4339:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4339 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_geometry_tooltip()': graphics-info-draw.cc:4420:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4420 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-info-draw.cc:4435: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ graphics-info-draw.cc: In lambda function: graphics-info-draw.cc:4612:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4612 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_bad_nbc_atom_pair_markers(unsigned int)': graphics-info-draw.cc:5481:38: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 5481 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_chiral_volume_outlier_markers(unsigned int)': graphics-info-draw.cc:5531:48: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 5531 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_ligand_view()': graphics-info-draw.cc:5724:38: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 5724 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_extra_distance_restraints(int)': graphics-info-draw.cc:6164:38: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 6164 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-init.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-intermediate.lo graphics-info-intermediate.cc In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-gui.cc:71: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-intermediate.cc -fPIC -DPIC -o .libs/graphics-info-intermediate.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-modelling.lo graphics-info-modelling.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-navigation.lo graphics-info-navigation.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-modelling.cc -fPIC -DPIC -o .libs/graphics-info-modelling.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-navigation-gtk2.lo graphics-info-navigation-gtk2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-navigation.cc -fPIC -DPIC -o .libs/graphics-info-navigation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-navigation-gtk2.cc -fPIC -DPIC -o .libs/graphics-info-navigation-gtk2.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info-graphs.cc:24: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-preferences.lo graphics-info-preferences.cc In file included from ../coot-utils/coot-map-utils.hh:33, from graphics-info-graphs.cc:83: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info-graphs.cc: In lambda function: graphics-info-graphs.cc:97:60: warning: 'gboolean gtk_list_store_remove(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 97 | return ! gtk_list_store_remove(list,iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:95:15: note: declared here 95 | gboolean gtk_list_store_remove (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc: In static member function 'static void graphics_info_t::refresh_validation_graph_model_list()': graphics-info-graphs.cc:93:26: warning: 'void gtk_tree_model_foreach(GtkTreeModel*, GtkTreeModelForeachFunc, gpointer)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 93 | gtk_tree_model_foreach( | ~~~~~~~~~~~~~~~~~~~~~~^ 94 | GTK_TREE_MODEL(validation_graph_model_list), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 | +[](GtkTreeModel* model, GtkTreePath* path, GtkTreeIter* iter, gpointer data) -> gboolean { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | GtkListStore* list = GTK_LIST_STORE(model); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 | return ! gtk_list_store_remove(list,iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 | }, | ~~ 99 | NULL | ~~~~ 100 | ); | ~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:379:19: note: declared here 379 | void gtk_tree_model_foreach (GtkTreeModel *model, | ^~~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:107:31: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 107 | gtk_list_store_append(validation_graph_model_list, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:108:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 108 | gtk_list_store_set(validation_graph_model_list, &iter, 0, label.c_str(), 1, i, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc: In lambda function: graphics-info-graphs.cc:169:45: warning: 'gboolean gtk_list_store_remove(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 169 | return gboolean(!gtk_list_store_remove(list,iter)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:95:15: note: declared here 95 | gboolean gtk_list_store_remove (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc: In static member function 'static void graphics_info_t::refresh_ramachandran_plot_model_list()': graphics-info-graphs.cc:172:26: warning: 'void gtk_tree_model_foreach(GtkTreeModel*, GtkTreeModelForeachFunc, gpointer)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 172 | gtk_tree_model_foreach(GTK_TREE_MODEL(ramachandran_plot_model_list), fn, NULL); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:379:19: note: declared here 379 | void gtk_tree_model_foreach (GtkTreeModel *model, | ^~~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:179:31: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 179 | gtk_list_store_append(ramachandran_plot_model_list, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:180:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 180 | gtk_list_store_set(ramachandran_plot_model_list, &iter, 0, label.c_str(), 1, i, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-network.lo graphics-info-network.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-preferences.cc -fPIC -DPIC -o .libs/graphics-info-preferences.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-network.cc -fPIC -DPIC -o .libs/graphics-info-network.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-gui.cc:42: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::show_refinement_and_regularization_parameters_frame()': graphics-info-gui.cc:136:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 136 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(overall_weight_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:142:37: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 142 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(overall_weight_combobox), t.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:144:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 144 | gtk_combo_box_set_active(GTK_COMBO_BOX(overall_weight_combobox), 4); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::add_status_bar_text(const std::string&)': graphics-info-gui.cc:334:28: warning: 'guint gtk_statusbar_push(GtkStatusbar*, guint, const char*)' is deprecated [-Wdeprecated-declarations] 334 | gtk_statusbar_push(GTK_STATUSBAR(statusbar), statusbar_context_id, sbt.c_str()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:263: /usr/include/gtk-4.0/gtk/deprecated/gtkstatusbar.h:50:12: note: declared here 50 | guint gtk_statusbar_push (GtkStatusbar *statusbar, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::save_directory_from_filechooser(const GtkWidget*)': graphics-info-gui.cc:357:49: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 357 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::save_directory_for_saving_from_filechooser(const GtkWidget*)': graphics-info-gui.cc:376:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 376 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::set_file_for_save_filechooser(GtkWidget*) const': graphics-info-gui.cc:464:35: warning: 'gboolean gtk_file_chooser_set_file(GtkFileChooser*, GFile*, GError**)' is deprecated [-Wdeprecated-declarations] 464 | gtk_file_chooser_set_file(GTK_FILE_CHOOSER(filechooser), file, &error); // deprecated | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-init.cc: In member function 'void graphics_info_t::init()': graphics-info-init.cc:485:55: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 485 | validation_graph_model_list = gtk_list_store_new(2,G_TYPE_STRING,G_TYPE_INT); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:121:22: note: declared here 121 | gboolean gtk_file_chooser_set_file (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:476:43: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 476 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(filechooser), stripped_name.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-init.cc:488:56: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 488 | ramachandran_plot_model_list = gtk_list_store_new(2,G_TYPE_STRING,G_TYPE_INT); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'GtkWidget* graphics_info_t::dialog_box_of_buttons_internal(const std::string&, const std::vector, std::allocator >, void (*)(), void*> >&, const std::string&)': graphics-info-gui.cc:664:38: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 664 | GtkWidget *dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ graphics-info-gui.cc:668:55: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 668 | GtkWidget *vbox_outer = gtk_dialog_get_content_area(GTK_DIALOG(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:694:25: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 694 | gtk_dialog_add_button(GTK_DIALOG(dialog), close_button_label.c_str(), GTK_RESPONSE_CLOSE); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::new_fill_combobox_with_coordinates_options(GtkWidget*, GCallback, int)': graphics-info-gui.cc:1778:51: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1778 | GtkTreeModel *model_1 = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1784:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1784 | GtkListStore *store = gtk_list_store_new(2, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1788:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 1788 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1795:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1795 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1796:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1796 | gtk_list_store_set(store, &iter, 0, imol, 1, ss.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1800:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 1800 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1801:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 1801 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox_molecule), renderer, true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1802:34: warning: 'void gtk_cell_layout_set_attributes(GtkCellLayout*, GtkCellRenderer*, ...)' is deprecated [-Wdeprecated-declarations] 1802 | gtk_cell_layout_set_attributes(GTK_CELL_LAYOUT(combobox_molecule), renderer, "text", 1, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:125:7: note: declared here 125 | void gtk_cell_layout_set_attributes (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1803:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1803 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox_molecule), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1812:34: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1812 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox_molecule), imol_active); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1813:96: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1813 | std::cout << "!!!!!!!!!!! combobox get_active() returns " << gtk_combo_box_get_active(GTK_COMBO_BOX(combobox_molecule)) << std::endl; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::fill_combobox_with_molecule_options(GtkWidget*, GCallback, int, const std::vector&)': graphics-info-gui.cc:1835:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 1835 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1837:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1837 | GtkListStore *store = gtk_list_store_new(2, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1857:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1857 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1858:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1858 | gtk_list_store_set(store, &iter, 0, imol, 1, ss.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1867:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 1867 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1868:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 1868 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox), renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1869:35: warning: 'void gtk_cell_layout_set_attributes(GtkCellLayout*, GtkCellRenderer*, ...)' is deprecated [-Wdeprecated-declarations] 1869 | gtk_cell_layout_set_attributes (GTK_CELL_LAYOUT(combobox), renderer, "text", 1, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:125:7: note: declared here 125 | void gtk_cell_layout_set_attributes (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1870:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1870 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1874:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1874 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), active_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::fill_combobox_with_coordinates_options(GtkWidget*, GCallback, int)': graphics-info-gui.cc:1902:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1902 | GtkListStore *store = gtk_list_store_new(2, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1923:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1923 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1924:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1924 | gtk_list_store_set(store, &iter, 0, imol, 1, ss.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1936:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 1936 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1937:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 1937 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox), renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1938:35: warning: 'void gtk_cell_layout_set_attributes(GtkCellLayout*, GtkCellRenderer*, ...)' is deprecated [-Wdeprecated-declarations] 1938 | gtk_cell_layout_set_attributes (GTK_CELL_LAYOUT(combobox), renderer, "text", 1, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:125:7: note: declared here 125 | void gtk_cell_layout_set_attributes (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1939:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1939 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1945:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1945 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), active_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::fill_combobox_with_undo_options(GtkWidget*)': graphics-info-gui.cc:2192:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 2192 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': graphics-info-gui.cc:3101:50: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { | ^ graphics-info-gui.cc: In static member function 'static void graphics_info_t::fill_bond_parameters_internals(GtkWidget*, int)': graphics-info-gui.cc:3652:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 3652 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(bond_width_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3668:32: warning: 'void gtk_combo_box_text_append(GtkComboBoxText*, const char*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 3668 | gtk_combo_box_text_append(GTK_COMBO_BOX_TEXT(bond_width_combobox), nullptr, s.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:65:15: note: declared here 65 | void gtk_combo_box_text_append (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3673:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3673 | gtk_combo_box_set_active(GTK_COMBO_BOX(bond_width_combobox), idx_active); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::bond_parameters_bond_width_combobox_changed(GtkWidget*, gpointer)': graphics-info-gui.cc:3747:37: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3747 | int id = gtk_combo_box_get_active(GTK_COMBO_BOX(bond_width_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::string graphics_info_t::get_active_label_in_comboboxtext(GtkComboBoxText*)': graphics-info-gui.cc:3956:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 3956 | gchar *at = gtk_combo_box_text_get_active_text(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::string graphics_info_t::get_active_label_in_combobox(GtkComboBox*) const': graphics-info-gui.cc:3967:49: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3967 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3969:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3969 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3973:31: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 3973 | gtk_tree_model_get_value(model, &iter, 0, &f_label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static std::string graphics_info_t::fill_combobox_with_chain_options(GtkWidget*, int, GCallback, const std::string&)': graphics-info-gui.cc:4015:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4015 | gtk_combo_box_text_remove_all(cb_as_text); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:4022:40: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4022 | gtk_combo_box_text_append_text(cb_as_text, ch_id.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:4024:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 4024 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox_text), i); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-mutate.lo graphics-info-mutate.cc graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4509:46: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4509 | graphics_info_t::get_pointer_position_frac() const { | ^~~~~ graphics-info-gui.cc:4516:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4516 | gtk_widget_get_allocation(glarea, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-navigation.cc:54: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-modelling.cc:65: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-mutate.cc -fPIC -DPIC -o .libs/graphics-info-mutate.o graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_refinement_dialog_arrow_tab()': graphics-info-draw.cc:1686:105: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 1686 | auto p_s = get_munged_offset_and_scale(HUDTextureMesh::TOP_RIGHT, position_natural, 1.0, 1.0, w, h); | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-navigation.cc:61: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-modelling.cc:80: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-intermediate.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-navigation-gtk2.cc:42: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-network.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-preferences.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': graphics-info-gui.cc:3101:1: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { | ^~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-mutate.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4509:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4509 | graphics_info_t::get_pointer_position_frac() const { | ^~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-navigation.cc:48: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-navigation.cc:63: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info-navigation.cc: In member function 'void graphics_info_t::update_go_to_atom_window_on_new_mol()': graphics-info-navigation.cc:825:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 825 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc: In member function 'void graphics_info_t::update_go_to_atom_window_on_other_molecule_chosen(int)': graphics-info-navigation.cc:874:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 874 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc: In static member function 'static void graphics_info_t::go_to_atom_mol_combobox_changed(GtkWidget*, gpointer)': graphics-info-navigation.cc:949:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 949 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:951:52: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 951 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:953:31: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 953 | gtk_tree_model_get_value(model, &iter, 0, &label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc: In member function 'int graphics_info_t::combobox_get_imol(GtkComboBox*) const': graphics-info-navigation.cc:982:53: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 982 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:984:55: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 984 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:989:37: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 989 | gtk_tree_model_get_value(model, &iter, 0, &label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-modelling.cc:48: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info-modelling.cc: In static member function 'static void graphics_info_t::move_molecule_here_combobox_changed(GtkWidget*, gpointer)': graphics-info-modelling.cc:5576:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 5576 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-modelling.cc:5578:52: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 5578 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-modelling.cc:5580:31: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 5580 | gtk_tree_model_get_value(model, &iter, 0, &label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-mutate.cc:61: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-navigation-gtk2.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:26, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcssenumtypes.h:11, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:33, from /usr/include/gtk-4.0/gtk/gtk.h:29: graphics-info-navigation-gtk2.cc: In lambda function: graphics-info-navigation-gtk2.cc:177:98: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 177 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:177:67: note: in expansion of macro 'GTK_TREE_VIEW' 177 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In lambda function: graphics-info-navigation-gtk2.cc:195:56: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 195 | atom_list = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:195:25: note: in expansion of macro 'GTK_TREE_VIEW' 195 | atom_list = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::fill_go_to_atom_window_residue_and_atom_lists_gtk4()': graphics-info-navigation-gtk2.cc:228:43: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 228 | tv = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:228:12: note: in expansion of macro 'GTK_TREE_VIEW' 228 | tv = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:230:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 230 | GtkTreeModel *model = gtk_tree_view_get_model(tv); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:234:27: warning: 'void gtk_tree_store_clear(GtkTreeStore*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 234 | gtk_tree_store_clear(GTK_TREE_STORE(model)); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:292: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:142:15: note: declared here 142 | void gtk_tree_store_clear (GtkTreeStore *tree_store); | ^~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:254:50: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 254 | GtkTreeStore *tree_store = gtk_tree_store_new (2, G_TYPE_STRING, G_TYPE_POINTER); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:258:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 258 | gtk_tree_view_set_model(GTK_TREE_VIEW(gtktree), GTK_TREE_MODEL(tree_store)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:261:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 261 | gtk_tree_store_append(GTK_TREE_STORE(tree_store), &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:265:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 265 | gtk_tree_store_set (tree_store, &toplevel, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 266 | CHAIN_COL, residue_chains[ichain].chain_id.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 | RESIDUE_COL, NULL, | ~~~~~~~~~~~~~~~~~~ 268 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:275:31: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 275 | gtk_tree_store_append(GTK_TREE_STORE(tree_store), &child, &toplevel); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:280:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 280 | gtk_tree_store_set(tree_store, &child, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 281 | CHAIN_COL, lab.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 282 | RESIDUE_COL, res_spec_ptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:288:66: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 288 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:290:76: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new_with_attributes(const char*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 290 | GtkTreeViewColumn *column = gtk_tree_view_column_new_with_attributes ("Chains", cell_renderer, "markup", 0, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:87:25: note: declared here 87 | GtkTreeViewColumn *gtk_tree_view_column_new_with_attributes (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:293:34: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 293 | gtk_tree_view_append_column(GTK_TREE_VIEW (tv), GTK_TREE_VIEW_COLUMN (column)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:295:66: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 295 | GtkTreeSelection* tree_sel = gtk_tree_view_get_selection (tv); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:296:34: warning: 'void gtk_tree_selection_set_mode(GtkTreeSelection*, GtkSelectionMode)' is deprecated [-Wdeprecated-declarations] 296 | gtk_tree_selection_set_mode(tree_sel, GTK_SELECTION_SINGLE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:290: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:76:18: note: declared here 76 | void gtk_tree_selection_set_mode (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:300:45: warning: 'void gtk_tree_selection_set_select_function(GtkTreeSelection*, GtkTreeSelectionFunc, gpointer, GDestroyNotify)' is deprecated [-Wdeprecated-declarations] 300 | gtk_tree_selection_set_select_function(tree_sel, residue_tree_selection_func, NULL, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:81:18: note: declared here 81 | void gtk_tree_selection_set_select_function (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:307:52: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 307 | GtkTreeModel *model = gtk_tree_view_get_model(GTK_TREE_VIEW(atom_list)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:310:30: warning: 'void gtk_list_store_clear(GtkListStore*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 310 | gtk_list_store_clear(list_store); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:128:15: note: declared here 128 | void gtk_list_store_clear (GtkListStore *list_store); | ^~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In lambda function: graphics-info-navigation-gtk2.cc:332:98: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 332 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:332:67: note: in expansion of macro 'GTK_TREE_VIEW' 332 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static gboolean graphics_info_t::residue_tree_selection_func(GtkTreeSelection*, GtkTreeModel*, GtkTreePath*, gboolean, gpointer)': graphics-info-navigation-gtk2.cc:420:32: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 420 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:422:26: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 422 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:432:35: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 432 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &residue_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::residue_tree_residue_row_activated(GtkTreeView*, GtkTreePath*, GtkTreeViewColumn*, gpointer)': graphics-info-navigation-gtk2.cc:487:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 487 | GtkTreeModel *model = gtk_tree_view_get_model(treeview); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:490:32: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 490 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:492:26: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 492 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:499:32: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 499 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &residue_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::fill_go_to_atom_atom_list_gtk2(GtkWidget*, int, char*, int, char*)': graphics-info-navigation-gtk2.cc:581:50: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 581 | atom_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:581:19: note: in expansion of macro 'GTK_TREE_VIEW' 581 | atom_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:594:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 594 | GtkTreeModel *model = gtk_tree_view_get_model(atom_tree); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:596:39: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 596 | list_store = gtk_list_store_new (2, G_TYPE_STRING, G_TYPE_POINTER); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:600:27: warning: 'void gtk_list_store_clear(GtkListStore*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 600 | gtk_list_store_clear(list_store); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:128:15: note: declared here 128 | void gtk_list_store_clear (GtkListStore *list_store); | ^~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:605:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 605 | gtk_tree_view_set_model(GTK_TREE_VIEW(atom_tree), GTK_TREE_MODEL(list_store)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:609:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 609 | gtk_list_store_append(GTK_LIST_STORE(list_store), &toplevel); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:610:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 610 | gtk_list_store_set(GTK_LIST_STORE(list_store), &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 | CHAIN_COL, atoms[iatom].button_label.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 | RESIDUE_COL, (gpointer) atoms[iatom].atom, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:617:57: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 617 | GtkCellRenderer *cell = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:619:51: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new_with_attributes(const char*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 619 | gtk_tree_view_column_new_with_attributes ("Atoms", cell, "text", 0, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:87:25: note: declared here 87 | GtkTreeViewColumn *gtk_tree_view_column_new_with_attributes (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:620:35: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 620 | gtk_tree_view_append_column (GTK_TREE_VIEW (atom_tree), GTK_TREE_VIEW_COLUMN (column)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:622:66: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 622 | GtkTreeSelection* tree_sel = gtk_tree_view_get_selection (atom_tree); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:623:34: warning: 'void gtk_tree_selection_set_mode(GtkTreeSelection*, GtkSelectionMode)' is deprecated [-Wdeprecated-declarations] 623 | gtk_tree_selection_set_mode(tree_sel, GTK_SELECTION_SINGLE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:76:18: note: declared here 76 | void gtk_tree_selection_set_mode (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:626:46: warning: 'void gtk_tree_selection_set_select_function(GtkTreeSelection*, GtkTreeSelectionFunc, gpointer, GDestroyNotify)' is deprecated [-Wdeprecated-declarations] 626 | gtk_tree_selection_set_select_function (tree_sel, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 627 | graphics_info_t::atom_tree_selection_func, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 | NULL, NULL); | ~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:81:18: note: declared here 81 | void gtk_tree_selection_set_select_function (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::atom_tree_atom_row_activated(GtkTreeView*, GtkTreePath*, GtkTreeViewColumn*, gpointer)': graphics-info-navigation-gtk2.cc:642:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 642 | GtkTreeModel *model = gtk_tree_view_get_model(treeview); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:645:31: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 645 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:647:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 647 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:654:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 654 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &atom_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static gboolean graphics_info_t::atom_tree_selection_func(GtkTreeSelection*, GtkTreeModel*, GtkTreePath*, gboolean, gpointer)': graphics-info-navigation-gtk2.cc:688:31: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 688 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:690:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 690 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:697:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 697 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &atom_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-preferences.cc:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-preferences.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info-preferences.cc: In static member function 'static void graphics_info_t::preferences_toolbar_icon_toggled(GtkCellRendererToggle*, gchar*, gpointer, int)': graphics-info-preferences.cc:712:53: warning: 'GtkTreePath* gtk_tree_path_new_from_string(const char*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 712 | GtkTreePath *path = gtk_tree_path_new_from_string (path_string); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:201:14: note: declared here 201 | GtkTreePath *gtk_tree_path_new_from_string (const char *path); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:716:26: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 716 | gtk_tree_model_get_iter(model, &iter, path); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:717:21: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 717 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 718 | 0, &value, | ~~~~~~~~~~ 719 | 3, &icon_pos, -1); | ~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:722:22: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 722 | gtk_list_store_set (GTK_LIST_STORE (model), &iter, 0, value, -1); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:730:22: warning: 'void gtk_tree_path_free(GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 730 | gtk_tree_path_free (path); | ~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:228:14: note: declared here 228 | void gtk_tree_path_free (GtkTreePath *path); | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc: In member function 'void graphics_info_t::fill_preferences_toolbar_icons(GtkWidget*, GtkWidget*, int)': graphics-info-preferences.cc:775:45: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 775 | GtkWidget *icons_tree = gtk_tree_view_new(); | ~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:776:37: warning: 'void gtk_tree_view_set_headers_visible(GtkTreeView*, gboolean)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 776 | gtk_tree_view_set_headers_visible(GTK_TREE_VIEW(icons_tree), FALSE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:209:24: note: declared here 209 | void gtk_tree_view_set_headers_visible (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:26, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcssenumtypes.h:11, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:33, from /usr/include/gtk-4.0/gtk/gtk.h:29: graphics-info-preferences.cc:790:59: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 790 | GtkTreeModel *model = GTK_TREE_MODEL(gtk_list_store_new(4, G_TYPE_BOOLEAN, GDK_TYPE_PIXBUF, G_TYPE_STRING, G_TYPE_INT)); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:30:41: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 30 | #define GTK_TREE_MODEL(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_MODEL, GtkTreeModel)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:790:26: note: in expansion of macro 'GTK_TREE_MODEL' 790 | GtkTreeModel *model = GTK_TREE_MODEL(gtk_list_store_new(4, G_TYPE_BOOLEAN, GDK_TYPE_PIXBUF, G_TYPE_STRING, G_TYPE_INT)); | ^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:800:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 800 | gtk_tree_view_set_model(GTK_TREE_VIEW(icons_tree), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:802:41: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 802 | button_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:803:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 803 | icon_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:804:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 804 | text_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:809:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 809 | gtk_list_store_append(GTK_LIST_STORE(model), &toplevel); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:857:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 857 | gtk_list_store_set(GTK_LIST_STORE(model), &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | BUTTON_COL, "", | ~~~~~~~~~~~~~~~ 859 | ICON_COL, icon, | ~~~~~~~~~~~~~~~ 860 | TEXT_COL, item.icon_text.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 | INDEX_COL, item.icon_pos, | ~~~~~~~~~~~~~~~~~~~~~~~~~ 862 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:866:41: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 866 | button_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:867:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 867 | gtk_tree_view_append_column(GTK_TREE_VIEW(icons_tree), button_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:868:50: warning: 'GtkCellRenderer* gtk_cell_renderer_toggle_new()' is deprecated [-Wdeprecated-declarations] 868 | button_renderer = gtk_cell_renderer_toggle_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:77: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertoggle.h:40:18: note: declared here 40 | GtkCellRenderer *gtk_cell_renderer_toggle_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:869:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 869 | gtk_tree_view_column_pack_start(button_col, GTK_CELL_RENDERER(button_renderer), TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:871:39: warning: 'void gtk_tree_view_column_set_attributes(GtkTreeViewColumn*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 871 | gtk_tree_view_column_set_attributes(button_col, button_renderer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 | "active", BUTTON_COL, | ~~~~~~~~~~~~~~~~~~~~~ 873 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:106:25: note: declared here 106 | void gtk_tree_view_column_set_attributes (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:885:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 885 | icon_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:886:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 886 | gtk_tree_view_append_column(GTK_TREE_VIEW(icons_tree), icon_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:887:48: warning: 'GtkCellRenderer* gtk_cell_renderer_pixbuf_new()' is deprecated [-Wdeprecated-declarations] 887 | icon_renderer = gtk_cell_renderer_pixbuf_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:72: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendererpixbuf.h:39:18: note: declared here 39 | GtkCellRenderer *gtk_cell_renderer_pixbuf_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:888:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 888 | gtk_tree_view_column_pack_start(icon_col, icon_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:889:39: warning: 'void gtk_tree_view_column_set_attributes(GtkTreeViewColumn*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 889 | gtk_tree_view_column_set_attributes(icon_col, icon_renderer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 890 | "pixbuf", ICON_COL, | ~~~~~~~~~~~~~~~~~~~ 891 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:106:25: note: declared here 106 | void gtk_tree_view_column_set_attributes (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:894:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 894 | text_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:895:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 895 | gtk_tree_view_append_column(GTK_TREE_VIEW(icons_tree), text_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:896:46: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 896 | text_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:897:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 897 | gtk_tree_view_column_pack_start(text_col, text_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:898:39: warning: 'void gtk_tree_view_column_set_attributes(GtkTreeViewColumn*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 898 | gtk_tree_view_column_set_attributes(text_col, text_renderer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 899 | "text", TEXT_COL, | ~~~~~~~~~~~~~~~~~ 900 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:106:25: note: declared here 106 | void gtk_tree_view_column_set_attributes (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc: In static member function 'static void graphics_info_t::update_toolbar_icons(GtkTreeModel*, int)': graphics-info-preferences.cc:987:36: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 987 | if (gtk_tree_model_get_iter_first(model, &iter)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:989:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 989 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 990 | 0, &button_value, | ~~~~~~~~~~~~~~~~~ 991 | 3, &col_index, -1); | ~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:997:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 997 | gtk_list_store_set (GTK_LIST_STORE (model), &iter, 0, 1, -1); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:1000:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1000 | gtk_list_store_set (GTK_LIST_STORE (model), &iter, 0, 0, -1); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:1003:38: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1003 | } while (gtk_tree_model_iter_next(model, &iter)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': graphics-info-gui.cc:3101:1: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { | ^~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4509:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4509 | graphics_info_t::get_pointer_position_frac() const { | ^~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-mutate.cc:58: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-lsq.lo graphics-info-lsq.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-opengl.lo graphics-info-opengl.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 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-DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-pick.lo graphics-info-pick.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 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graphics-info-opengl.cc -fPIC -DPIC -o .libs/graphics-info-opengl.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-pick.cc -fPIC -DPIC -o .libs/graphics-info-pick.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-refmac.lo graphics-info-refmac.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-refmac.cc -fPIC -DPIC -o .libs/graphics-info-refmac.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-render-scene.lo graphics-info-render-scene.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-render.cc -fPIC -DPIC -o .libs/graphics-info-render.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-render-scene.cc -fPIC -DPIC -o .libs/graphics-info-render-scene.o In file included from graphics-info-render-scene.cc:27: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-residues.lo graphics-info-residues.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-pick.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-residues.cc -fPIC -DPIC -o .libs/graphics-info-residues.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-refine.lo graphics-info-refine.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-refine.cc -fPIC -DPIC -o .libs/graphics-info-refine.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-lsq.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-refmac.cc:71: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-opengl.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-refmac.cc:79: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-lsq.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-residues.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-render.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-pick.cc:42: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from graphics-info-render-scene.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-refmac.cc:50: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-scripting.lo graphics-info-scripting.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-scripting.cc -fPIC -DPIC -o .libs/graphics-info-scripting.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-refine.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-opengl.cc: In static member function 'static glm::vec4 graphics_info_t::unproject(float, float, float)': graphics-info-opengl.cc:350:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 350 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-lsq.cc:39: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from graphics-info-pick.cc:56: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-state.lo graphics-info-state.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-statics.lo graphics-info-statics.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-state.cc -fPIC -DPIC -o .libs/graphics-info-state.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-statics.cc -fPIC -DPIC -o .libs/graphics-info-statics.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from graphics-info-render.cc:1203: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-render-scene.cc:36: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-render-scene.cc: In lambda function: graphics-info-render-scene.cc:731:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 731 | gtk_widget_get_allocation(gl_area, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-superpose.lo graphics-info-superpose.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-superpose.cc -fPIC -DPIC -o .libs/graphics-info-superpose.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-scripting.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-statics.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-trackball.lo graphics-info-trackball.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-ligand-view.lo graphics-ligand-view.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-trackball.cc -fPIC -DPIC -o .libs/graphics-info-trackball.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-ligand-view.cc -fPIC -DPIC -o .libs/graphics-ligand-view.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-ligand-mesh-molecule.lo graphics-ligand-mesh-molecule.cc In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-state.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-ligand-mesh-molecule.cc -fPIC -DPIC -o .libs/graphics-ligand-mesh-molecule.o ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-scripting.cc:35: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3906, from /usr/include/c++/14/math.h:36, from /usr/include/python3.13/Python.h:22, from graphics-info-statics.cc:28: /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': graphics-info-statics.cc:293:84: required from here 293 | std::pair graphics_info_t::mouse_previous_position = std::make_pair(0.0, 0.0); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ In file included from graphics-ligand-view.hh:21, from graphics-ligand-view.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-superpose.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from meshed-generic-display-object.hh:30, from coot-render.hh:40, from graphics-ligand-view.hh:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gl-matrix.lo gl-matrix.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gl-matrix.cc -fPIC -DPIC -o .libs/gl-matrix.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtkglarea-rama-plot.lo gtkglarea-rama-plot.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtkglarea-rama-plot.cc -fPIC -DPIC -o .libs/gtkglarea-rama-plot.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-state.cc:34: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-state.cc:40: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-trackball.cc:57: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-manual.lo gtk-manual.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-manual.cc -fPIC -DPIC -o .libs/gtk-manual.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-widget-conversion-utils.lo gtk-widget-conversion-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-widget-conversion-utils.cc -fPIC -DPIC -o .libs/gtk-widget-conversion-utils.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-utils.lo gtk-utils.cc In file included from cc-interface.hh:37, from gtk-manual.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-utils.cc -fPIC -DPIC -o .libs/gtk-utils.o graphics-ligand-view.cc: In member function 'void graphics_ligand_bond::gl_bond_double_aromatic_bond(const lig_build::pos_t&, const lig_build::pos_t&, bool, bool)': graphics-ligand-view.cc:278:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 278 | make_double_aromatic_short_stick(pos_1, pos_2, shorten_first, shorten_second); | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from gtkglarea-rama-plot.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-ligand-mesh-molecule.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from gtk-widget-conversion-utils.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o HUDMesh.lo HUDMesh.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c HUDMesh.cc -fPIC -DPIC -o .libs/HUDMesh.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o HUDTextureMesh.lo HUDTextureMesh.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c HUDTextureMesh.cc -fPIC -DPIC -o .libs/HUDTextureMesh.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Instanced-Markup-Mesh.lo Instanced-Markup-Mesh.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from gtk-manual.cc:46: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Instanced-Markup-Mesh.cc -fPIC -DPIC -o .libs/Instanced-Markup-Mesh.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o init-from-gtkbuilder.lo init-from-gtkbuilder.cc In file included from Instanced-Markup-Mesh.cc:242: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c init-from-gtkbuilder.cc -fPIC -DPIC -o .libs/init-from-gtkbuilder.o gtkglarea-rama-plot.cc: In function 'void gtkgl_rama_on_glarea_render(GtkWidget*)': gtkglarea-rama-plot.cc:94:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 94 | gtk_widget_get_allocation(GTK_WIDGET(gtk_gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtkglarea-rama-plot.cc: In lambda function: gtkglarea-rama-plot.cc:130:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 130 | gtk_widget_get_allocation(gl_area, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtkglarea-rama-plot.cc: In static member function 'static void graphics_info_t::draw_rama_plots()': gtkglarea-rama-plot.cc:354:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 354 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o key-bindings.lo key-bindings.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o LinesMesh.lo LinesMesh.cc In file included from ../src/command-arg.hh:33, from ../src/graphics-info.h:66, from gtk-utils.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from ../src/molecule-class-info.h:85, from ../src/graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c key-bindings.cc -fPIC -DPIC -o .libs/key-bindings.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c LinesMesh.cc -fPIC -DPIC -o .libs/LinesMesh.o In file included from ../src/molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o LigandViewMesh.lo LigandViewMesh.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-callbacks-outer.lo lbg-callbacks-outer.cc In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.cc:35: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc: In function 'GtkWidget* create_symmetry_colour_selection_window()': gtk-manual.cc:97:49: warning: 'GtkWidget* gtk_color_chooser_dialog_new(const char*, GtkWindow*)' is deprecated [-Wdeprecated-declarations] 97 | colorseldialog = gtk_color_chooser_dialog_new("Symmetry Colour Selection", parent_window); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:84: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooserdialog.h:38:13: note: declared here 38 | GtkWidget * gtk_color_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc: In function 'void on_display_manager_selections_and_colours_combobox_changed(GtkComboBox*, gpointer)': gtk-manual.cc:320:51: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 320 | gchar *txt = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combo_box)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc: In function 'GtkWidget* selections_and_colours_combobox(int)': gtk-manual.cc:376:48: warning: 'GtkWidget* gtk_combo_box_text_new()' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 376 | GtkWidget *combobox = gtk_combo_box_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:38:15: note: declared here 38 | GtkWidget* gtk_combo_box_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:383:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 383 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Bonds (Colour by Atom)")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:384:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 384 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Bonds (Colour by Chain)")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:385:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 385 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Bonds (Colour by Molecule)")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:387:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 387 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("C-alphas/Backbone")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:388:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 388 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("CAs + Ligands")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:389:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 389 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("CAs+Ligs SecStr Col")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:390:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 390 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Jones' Rainbow")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:391:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 391 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by Sec. Str. Bonds")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:392:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 392 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by Atom - No Waters")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:393:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 393 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by B-factor - Backbone")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:394:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 394 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by B-factor - All")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:395:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 395 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by Occupancy")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:447:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 447 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), index); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c LigandViewMesh.cc -fPIC -DPIC -o .libs/LigandViewMesh.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-interface.lo lbg-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-callbacks-outer.cc -fPIC -DPIC -o .libs/lbg-callbacks-outer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Model.lo Model.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-interface.cc -fPIC -DPIC -o .libs/lbg-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Model.cc -fPIC -DPIC -o .libs/Model.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-a-dodec.lo make-a-dodec.cc In file included from ../src/graphics-ligand-mesh-molecule.hh:30, from ../src/graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-a-dodec.cc -fPIC -DPIC -o .libs/make-a-dodec.o ../src/graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': ../src/graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../src/gtk-utils.hh:26, from gtk-utils.cc:24: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from init-from-gtkbuilder.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o matrix-utils.lo matrix-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 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-DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh.lo Mesh.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh.cc -fPIC -DPIC -o .libs/Mesh.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-glTF.lo Mesh-from-glTF.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds-instanced.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-glTF.cc -fPIC -DPIC -o .libs/Mesh-from-glTF.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-graphical-bonds-instanced.cc -fPIC -DPIC -o .libs/Mesh-from-graphical-bonds-instanced.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-graphical-bonds.lo Mesh-from-graphical-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-graphical-bonds.cc -fPIC -DPIC -o .libs/Mesh-from-graphical-bonds.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from Mesh-from-glTF.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecular-mesh-generator.hh:44, from Model.hh:39, from Model.cc:37: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o meshed-generic-display-object.lo meshed-generic-display-object.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c meshed-generic-display-object.cc -fPIC -DPIC -o .libs/meshed-generic-display-object.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o model-molecule-meshes.lo model-molecule-meshes.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecular-mesh-generator.hh:44, from Mesh-from-graphical-bonds.cc:703: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c model-molecule-meshes.cc -fPIC -DPIC -o .libs/model-molecule-meshes.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info.lo molecule-class-info.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-alignment.lo molecule-class-info-alignment.cc In file included from command-arg.hh:33, from graphics-info.h:66, from lbg-interface.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info.cc -fPIC -DPIC -o .libs/molecule-class-info.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-alignment.cc -fPIC -DPIC -o .libs/molecule-class-info-alignment.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-analysis.lo molecule-class-info-analysis.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-analysis.cc -fPIC -DPIC -o .libs/molecule-class-info-analysis.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-bonds.lo molecule-class-info-bonds.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-build.lo molecule-class-info-build.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-bonds.cc -fPIC -DPIC -o .libs/molecule-class-info-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-build.cc -fPIC -DPIC -o .libs/molecule-class-info-build.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from meshed-generic-display-object.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-alignment.cc:27: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-analysis.cc:28: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-maps.lo molecule-class-info-maps.cc In file included from command-arg.hh:33, from graphics-info.h:66, from model-molecule-meshes.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-maps-2.lo molecule-class-info-maps-2.cc In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-maps.cc -fPIC -DPIC -o .libs/molecule-class-info-maps.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-bonds.cc:22: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-maps-2.cc -fPIC -DPIC -o .libs/molecule-class-info-maps-2.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info.cc:77: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-build.cc:36: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:39, from lbg-interface.cc:39: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info.cc:90: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-maps-2.cc:26: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151, from molecule-class-info-bonds.cc:24: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-maps.cc:56: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-molecular-symmetry.lo molecule-class-info-molecular-symmetry.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-kdc.lo molecule-class-info-kdc.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-dots.lo molecule-class-info-dots.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-molecular-symmetry.cc -fPIC -DPIC -o .libs/molecule-class-info-molecular-symmetry.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-kdc.cc -fPIC -DPIC -o .libs/molecule-class-info-kdc.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-dots.cc -fPIC -DPIC -o .libs/molecule-class-info-dots.o In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-dots-internal.lo molecule-class-info-dots-internal.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.hh:29, from molecule-class-info.cc:80: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-dots-internal.cc -fPIC -DPIC -o .libs/molecule-class-info-dots-internal.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-other.lo molecule-class-info-other.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-mutate.lo molecule-class-info-mutate.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-mutate.cc -fPIC -DPIC -o .libs/molecule-class-info-mutate.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-other.cc -fPIC -DPIC -o .libs/molecule-class-info-other.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-molecular-symmetry.cc:22: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-maps-2.cc:209: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-kdc.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151, from molecule-class-info-maps.cc:79: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-maps.cc:88: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from ../api/coot-molecule.hh:75, from molecule-class-info.cc:120: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-residues.lo molecule-class-info-residues.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-refine.lo molecule-class-info-refine.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-refine.cc -fPIC -DPIC -o .libs/molecule-class-info-refine.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-residues.cc -fPIC -DPIC -o .libs/molecule-class-info-residues.o In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-dots.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3906, from /usr/include/c++/14/math.h:36, from /usr/include/python3.13/Python.h:22, from molecule-class-info.cc:25: /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = glm::vec<3, float, glm::packed_highp>; _T2 = float&; typename __strip_reference_wrapper::type>::__type = glm::vec<3, float, glm::packed_highp>; typename decay<_Tp>::type = glm::vec<3, float, glm::packed_highp>; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': molecule-class-info.cc:10781:54: required from here 10781 | positions[i] = std::make_pair(glm::vec3(p.x(), p.y(), p.z()), f); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair, float>' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-kk.lo molecule-class-info-kk.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-kk.cc -fPIC -DPIC -o .libs/molecule-class-info-kk.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-other.cc:64: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-mutate.cc:52: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-surface.lo molecule-class-info-surface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-surface.cc -fPIC -DPIC -o .libs/molecule-class-info-surface.o In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-refine.cc:36: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-residues.cc:45: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-refine.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-other.cc:67: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-string.lo molecule-class-info-string.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-patterson.lo molecule-class-info-patterson.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-string.cc -fPIC -DPIC -o .libs/molecule-class-info-string.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-surface.cc:36: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-ncs.lo molecule-class-info-ncs.cc In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/contrib/function_object_bases.h:50, from /usr/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:28, from molecule-class-info.h:105: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-mutate.cc:58: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-kk.cc:25: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-patterson.cc -fPIC -DPIC -o .libs/molecule-class-info-patterson.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-ncs.cc -fPIC -DPIC -o .libs/molecule-class-info-ncs.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-string.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-surface.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-other.cc:84: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ molecule-class-info-mutate.cc: In member function 'void molecule_class_info_t::spin_search(clipper::Xmap&, const std::string&, int, const std::string&, const std::pair, std::__cxx11::basic_string >&, const std::vector >&)': molecule-class-info-mutate.cc:1349:47: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1349 | float angle = coot::util::spin_search(xmap, res, tors).first; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-ncs.cc:45: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-patterson.cc:45: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-ncs.cc:47: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule&) const': molecule-class-info-other.cc:3894:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3894 | molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule &a_rotamer) const { | ^~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-mol-tris.lo molecule-class-info-mol-tris.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-mol-tris.cc -fPIC -DPIC -o .libs/molecule-class-info-mol-tris.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-ncs.cc:49: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info-ncs.cc:51: graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_phi_psi(int) const': molecule-class-info-other.cc:3628:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3628 | molecule_class_info_t::get_phi_psi(int atom_index) const { | ^~~~~~~~~~~~~~~~~~~~~ molecule-class-info-other.cc: In member function 'std::pair > molecule_class_info_t::get_clash_score(const coot::minimol::molecule&, bool, int) const': molecule-class-info-other.cc:3805:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3805 | std::pair rotamer_info = get_minimol_pos(a_rotamer); | ^ In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/contrib/function_object_bases.h:50, from /usr/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:28, from molecule-class-info.h:105: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': molecule-class-info-patterson.cc:111:47: required from here 111 | clipper::data32::F_sigF f = fsig[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::I_sigI]': molecule-class-info-patterson.cc:196:24: required from here 196 | if (!isig[ih.hkl()].missing()) { | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::I_sigI' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ molecule-class-info-ncs.cc: In member function 'std::pair molecule_class_info_t::chain_centre_and_radius(const std::string&) const': molecule-class-info-ncs.cc:2623:77: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2623 | molecule_class_info_t::chain_centre_and_radius(const std::string &chain_id) const { | ^~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-widget-work.lo molecule-class-info-widget-work.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-geometry.lo molecule-class-info-geometry.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-widget-work.cc -fPIC -DPIC -o .libs/molecule-class-info-widget-work.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecular-mesh-generator.lo molecular-mesh-generator.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-geometry.cc -fPIC -DPIC -o .libs/molecule-class-info-geometry.o In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-mol-tris.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ molecule-class-info-patterson.cc: In member function 'bool molecule_class_info_t::make_patterson(std::string, std::string, std::string, float)': molecule-class-info-patterson.cc:111:54: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 111 | clipper::data32::F_sigF f = fsig[ih.hkl()]; | ^ molecule-class-info-patterson.cc: In member function 'bool molecule_class_info_t::make_patterson_using_intensities(std::string, std::string, std::string, float)': molecule-class-info-patterson.cc:196:31: note: parameter passing for argument of type 'clipper::datatypes::I_sigI' when C++17 is enabled changed to match C++14 in GCC 10.1 196 | if (!isig[ih.hkl()].missing()) { | ~~~~~~~~~~~~~^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecular-mesh-generator.cc -fPIC -DPIC -o .libs/molecular-mesh-generator.o In file included from molecular-mesh-generator.cc:43: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecular-mesh-generator-mol-tris.lo molecular-mesh-generator-mol-tris.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecular-mesh-generator-mol-tris.cc -fPIC -DPIC -o .libs/molecular-mesh-generator-mol-tris.o In file included from molecular-mesh-generator-mol-tris.cc:35: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine In file included from ../MoleculesToTriangles/CXXClasses/Renderer.h:28, from ../MoleculesToTriangles/CXXClasses/RendererGL.h:28: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o obj_loader.lo obj_loader.cc In file included from ../MoleculesToTriangles/CXXClasses/Renderer.h:28, from ../MoleculesToTriangles/CXXClasses/RendererGL.h:28: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c obj_loader.cc -fPIC -DPIC -o .libs/obj_loader.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-geometry.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-widget-work.cc:27: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_phi_psi(int) const': molecule-class-info-other.cc:3628:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3628 | molecule_class_info_t::get_phi_psi(int atom_index) const { | ^~~~~~~~~~~~~~~~~~~~~ molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule&) const': molecule-class-info-other.cc:3894:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3894 | molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule &a_rotamer) const { | ^~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pick.lo pick.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pick.cc -fPIC -DPIC -o .libs/pick.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o positron-plot.lo positron-plot.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c positron-plot.cc -fPIC -DPIC -o .libs/positron-plot.o In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o probe-clash-score.lo probe-clash-score.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c probe-clash-score.cc -fPIC -DPIC -o .libs/probe-clash-score.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:37, from positron-plot.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from pick.cc:38: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from probe-clash-score.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db-interface.lo protein_db-interface.cc positron-plot.cc: In member function 'std::pair plot_data_t::canvas_coords_to_positron_coords(double, double) const': positron-plot.cc:169:65: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 169 | canvas_coords_to_positron_coords(double cx, double cy) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pumpkin.lo pumpkin.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db-interface.cc -fPIC -DPIC -o .libs/protein_db-interface.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151, from molecule-class-info-widget-work.cc:530: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../mini-mol/mini-mol-utils.hh:22, from protein_db-interface.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o python-classes.lo python-classes.cc In file included from command-arg.hh:33, from graphics-info.h:66, from pick.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pumpkin.cc -fPIC -DPIC -o .libs/pumpkin.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ positron-plot.cc: In member function 'void plot_data_t::fill_plot_data_from_positron_metadata(const std::string&, const std::string&)': positron-plot.cc:259:81: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 259 | std::pair sane_min_max = get_sane_min_v_max_v(mdc.metadata); | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c python-classes.cc -fPIC -DPIC -o .libs/python-classes.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Particle.lo Particle.cc /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o read-phs.lo read-phs.c libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Particle.cc -fPIC -DPIC -o .libs/Particle.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-cif.lo read-cif.cc libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c read-phs.c -fPIC -DPIC -o .libs/read-phs.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-cif.cc -fPIC -DPIC -o .libs/read-cif.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from Particle.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama_mousey.lo rama_mousey.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama_plot_with_canvas.lo rama_plot_with_canvas.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" 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-I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rsr-functions.cc -fPIC -DPIC -o .libs/rsr-functions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" 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-I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c text-rendering-utils.cc -fPIC -DPIC -o .libs/text-rendering-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c restraints-editor.cc -fPIC -DPIC -o .libs/restraints-editor.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sdf-interface.lo sdf-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c screendump-tga.cc -fPIC -DPIC -o .libs/screendump-tga.o In file included from read-cif.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sdf-interface.cc -fPIC -DPIC -o .libs/sdf-interface.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sequence-view.lo sequence-view.cc /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o seq-view-interface.lo seq-view-interface.c /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Shader.lo Shader.cc libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c seq-view-interface.c -fPIC -DPIC -o .libs/seq-view-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-view.cc -fPIC -DPIC -o .libs/sequence-view.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sound.lo sound.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Shader.cc -fPIC -DPIC -o .libs/Shader.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from pick.cc:54: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sound.cc -fPIC -DPIC -o .libs/sound.o seq-view-interface.c: In function 'seq_lookup_widget': seq-view-interface.c:56:14: warning: unused variable 'parent' [-Wunused-variable] 56 | GtkWidget *parent = NULL, *found_widget = NULL; | ^~~~~~ seq-view-interface.c: In function 'create_sequence_view_dialog': seq-view-interface.c:90:3: warning: 'gtk_dialog_new' is deprecated [-Wdeprecated-declarations] 90 | sequence_view_dialog = gtk_dialog_new (); | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43, from seq-view-interface.c:46: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ seq-view-interface.c:98:3: warning: 'gtk_dialog_get_content_area' is deprecated [-Wdeprecated-declarations] 98 | dialog_vbox1 = gtk_dialog_get_content_area(GTK_DIALOG(sequence_view_dialog)); | ^~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ seq-view-interface.c:100:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 100 | gtk_widget_show (dialog_vbox1); | ^~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c:108:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 108 | gtk_widget_show (sequence_view_scrolledwindow); | ^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c:127:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 127 | gtk_widget_show (hbox1); | ^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c:143:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 143 | gtk_widget_show (sequence_view_close_button); | ^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c: In function 'on_sequence_view_close_button_clicked': seq-view-interface.c:157:15: warning: unused variable 'window' [-Wunused-variable] 157 | GtkWidget *window = seq_lookup_widget(GTK_WIDGET(button), "sequence_view_dialog"); | ^~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o startup-utils.lo startup-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o testing.lo testing.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c startup-utils.cc -fPIC -DPIC -o .libs/startup-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c testing.cc -fPIC -DPIC -o .libs/testing.o In file included from startup-utils.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o testing-2.lo testing-2.cc In file included from sound.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c testing-2.cc -fPIC -DPIC -o .libs/testing-2.o In file included from restraints-editor.cc:40: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from screendump-tga.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Texture.lo Texture.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o TextureMesh.lo TextureMesh.cc In file included from command-arg.hh:33, from graphics-info.h:66, from rsr-functions.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Texture.cc -fPIC -DPIC -o .libs/Texture.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c TextureMesh.cc -fPIC -DPIC -o .libs/TextureMesh.o In file included from command-arg.hh:33, from graphics-info.h:66, from text-rendering-utils.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from restraints-editor.cc:49: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from Texture.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from sound.cc:45: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../ideal/simple-restraint.hh:162, from testing-2.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from testing-2.cc:25: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from testing.hh:26, from testing-2.cc:28: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o tomo-tools.lo tomo-tools.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c tomo-tools.cc -fPIC -DPIC -o .libs/tomo-tools.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o trackball.lo trackball.c In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from sdf-interface.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c trackball.c -fPIC -DPIC -o .libs/trackball.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' trackball.c:262:17: warning: argument 1 of type 'float[4]' with mismatched bound [-Warray-parameter=] 262 | add_quats(float q1[4], float q2[4], float dest[4]) | ~~~~~~^~~~~ In file included from trackball.c:54: trackball.h:82:18: note: previously declared as 'float *' 82 | add_quats(float *q1, float *q2, float *dest); | ~~~~~~~^~ trackball.c:262:30: warning: argument 2 of type 'float[4]' with mismatched bound [-Warray-parameter=] 262 | add_quats(float q1[4], float q2[4], float dest[4]) | ~~~~~~^~~~~ trackball.h:82:29: note: previously declared as 'float *' 82 | add_quats(float *q1, float *q2, float *dest); | ~~~~~~~^~ trackball.c:262:43: warning: argument 3 of type 'float[4]' with mismatched bound [-Warray-parameter=] 262 | add_quats(float q1[4], float q2[4], float dest[4]) | ~~~~~~^~~~~~~ trackball.h:82:40: note: previously declared as 'float *' 82 | add_quats(float *q1, float *q2, float *dest); | ~~~~~~~^~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o user-mods.lo user-mods.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from TextureMesh.cc:48: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from tomo-tools.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from text-rendering-utils.cc:35: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from restraints-editor.cc:37: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c user-mods.cc -fPIC -DPIC -o .libs/user-mods.o restraints-editor.cc: In member function 'void coot::restraints_editor::fill_atom_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:126:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 126 | GtkTreeStore *tree_store_atoms = gtk_tree_store_new (4, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | // G_TYPE_FLOAT // for partial change | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | G_TYPE_INT // for formal change | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | ); | ~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:292: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:135:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 135 | gtk_tree_view_set_model(tv_atoms, GTK_TREE_MODEL(tree_store_atoms)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:138:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 138 | gtk_tree_store_append(tree_store_atoms, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:148:25: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 148 | gtk_tree_store_set(tree_store_atoms, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | 0, restraints.atom_info[i].atom_id_4c.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | 1, restraints.atom_info[i].type_symbol.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | 2, restraints.atom_info[i].type_energy.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | 3, fc, | ~~~~~~ 153 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'GtkCellRenderer* coot::restraints_editor::add_cell_renderer(GtkTreeView*, GtkTreeStore*, const std::string&, int, int)': restraints-editor.cc:172:62: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 172 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:173:55: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 173 | GtkTreeViewColumn *column = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:174:33: warning: 'void gtk_tree_view_column_set_title(GtkTreeViewColumn*, const char*)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 174 | gtk_tree_view_column_set_title(column, column_title.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:165:25: note: declared here 165 | void gtk_tree_view_column_set_title (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:175:30: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 175 | gtk_tree_view_append_column(tree_view, column); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:176:34: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 176 | gtk_tree_view_column_pack_start(column, cell_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:177:37: warning: 'void gtk_tree_view_column_add_attribute(GtkTreeViewColumn*, GtkCellRenderer*, const char*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 177 | gtk_tree_view_column_add_attribute(column, cell_renderer, "text", pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:101:25: note: declared here 101 | void gtk_tree_view_column_add_attribute (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:180:42: warning: 'void gtk_tree_view_column_set_sort_column_id(GtkTreeViewColumn*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 180 | gtk_tree_view_column_set_sort_column_id(column, pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:201:25: note: declared here 201 | void gtk_tree_view_column_set_sort_column_id (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In static member function 'static void coot::restraints_editor::cell_edited_callback(GtkCellRendererText*, gchar*, gchar*, gpointer)': restraints-editor.cc:214:53: warning: 'GtkTreePath* gtk_tree_path_new_from_string(const char*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 214 | GtkTreePath *path = gtk_tree_path_new_from_string(path_string); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:201:14: note: declared here 201 | GtkTreePath *gtk_tree_path_new_from_string (const char *path); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:221:28: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 221 | gtk_tree_model_get_iter (model, &iter, path); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:228:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 228 | gtk_tree_store_set (GTK_TREE_STORE (model), &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 | column, f, | ~~~~~~~~~~ 230 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:236:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 236 | gtk_tree_store_set (GTK_TREE_STORE (model), &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 | column, ii, | ~~~~~~~~~~~ 238 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:243:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 243 | gtk_tree_store_set (GTK_TREE_STORE (model), &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 | column, new_text, | ~~~~~~~~~~~~~~~~~ 245 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_angle_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:346:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 346 | gtk_tree_store_new (5, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | G_TYPE_FLOAT, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:353:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 353 | gtk_tree_view_set_model(tv_angles, GTK_TREE_MODEL(tree_store_angles)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:356:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 356 | gtk_tree_store_append(tree_store_angles, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:357:25: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 357 | gtk_tree_store_set(tree_store_angles, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 | 0, restraints.angle_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | 1, restraints.angle_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 | 2, restraints.angle_restraint[i].atom_id_3_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 | 3, restraints.angle_restraint[i].angle(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 | 4, restraints.angle_restraint[i].esd(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_info_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:383:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 383 | gtk_tree_store_new (7, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 | G_TYPE_INT, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:391:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 391 | gtk_tree_view_set_model(tv_info, GTK_TREE_MODEL(tree_store_info)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:402:25: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 402 | gtk_tree_store_append(tree_store_info, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:403:22: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 403 | gtk_tree_store_set(tree_store_info, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 | 0, restraints.residue_info.comp_id.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 | 1, tlc.c_str(), | ~~~~~~~~~~~~~~~ 406 | 2, restraints.residue_info.name.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 | 3, restraints.residue_info.group.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 | 4, restraints.residue_info.number_atoms_all, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 | 5, restraints.residue_info.number_atoms_nh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 | 6, restraints.residue_info.description_level.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_bond_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:430:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 430 | GtkTreeStore *tree_store_bonds = gtk_tree_store_new (5, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 | G_TYPE_FLOAT, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:436:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 436 | gtk_tree_view_set_model(tv_bonds, GTK_TREE_MODEL(tree_store_bonds)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:439:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 439 | gtk_tree_store_append(tree_store_bonds, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:456:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 456 | gtk_tree_store_set(tree_store_bonds, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 | 0, restraints.bond_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 | 1, restraints.bond_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | 2, restraints.bond_restraint[i].type().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | 3, value_dist, | ~~~~~~~~~~~~~~ 461 | 4, value_esd, | ~~~~~~~~~~~~~ 462 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_torsion_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:493:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 493 | gtk_tree_store_new (8, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 494 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 | G_TYPE_FLOAT, G_TYPE_FLOAT, G_TYPE_INT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:500:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 500 | gtk_tree_view_set_model(tv_torsions, GTK_TREE_MODEL(tree_store_torsions)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:503:29: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 503 | gtk_tree_store_append(tree_store_torsions, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:504:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 504 | gtk_tree_store_set(tree_store_torsions, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 | 0, restraints.torsion_restraint[i].id().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 | 1, restraints.torsion_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 | 2, restraints.torsion_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 | 3, restraints.torsion_restraint[i].atom_id_3_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | 4, restraints.torsion_restraint[i].atom_id_4_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 | 5, restraints.torsion_restraint[i].angle(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 | 6, restraints.torsion_restraint[i].esd(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | coot::restraints_editor::TORSION_COL_PERIODICTY, restraints.torsion_restraint[i].periodicity(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_chiral_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:536:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 536 | gtk_tree_store_new (6, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 537 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 | G_TYPE_STRING); | ~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:543:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 543 | gtk_tree_view_set_model(tv_chirals, GTK_TREE_MODEL(tree_store_chirals)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:548:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 548 | gtk_tree_store_append(tree_store_chirals, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:549:25: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 549 | gtk_tree_store_set(tree_store_chirals, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | 0, restraints.chiral_restraint[i].Chiral_Id().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 | 1, restraints.chiral_restraint[i].atom_id_c_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 | 2, restraints.chiral_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 | 3, restraints.chiral_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 | 4, restraints.chiral_restraint[i].atom_id_3_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 | coot::restraints_editor::CHIRAL_COL_SIGN, chiral_volume_string.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_plane_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:592:34: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 592 | gtk_tree_view_set_model(tv_planes, GTK_TREE_MODEL(tree_store_planes)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:596:35: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 596 | gtk_tree_store_append(tree_store_planes, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:599:32: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 599 | gtk_tree_store_set(tree_store_planes, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 | esd_col_no, restraints.plane_restraint[iplane].dist_esd(0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:602:32: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 602 | gtk_tree_store_set(tree_store_planes, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 | 0, restraints.plane_restraint[iplane].plane_id.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:606:35: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 606 | gtk_tree_store_set(tree_store_planes, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 | iat+1, restraints.plane_restraint[iplane][iat].first.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'GtkTreeStore* coot::restraints_editor::make_tree_store_for_planes(int)': restraints-editor.cc:637:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 637 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 638 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:642:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 642 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 643 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:647:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 647 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 648 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 650 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:653:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 653 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 654 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:659:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 659 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 660 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:665:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 665 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 666 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:671:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 671 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 672 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 675 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:678:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 678 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 679 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:685:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 685 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 686 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:692:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 692 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 693 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:699:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 699 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 700 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 704 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:707:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 707 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 708 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:715:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 715 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 716 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:723:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 723 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 724 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:731:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 731 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 732 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 737 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:740:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 740 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 741 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:749:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 749 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 750 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:758:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 758 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 759 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:767:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 767 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 768 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 774 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:777:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 777 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 778 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:787:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 787 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 788 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:797:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 797 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 798 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:807:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 807 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 808 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 815 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_bond_restraints() const': restraints-editor.cc:857:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 857 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_bonds.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:868:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 868 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_bonds.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:882:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 882 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_bonds.store), &iter, col_no, &f, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:890:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 890 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_bonds.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_angle_restraints() const': restraints-editor.cc:912:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 912 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_angles.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:923:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 923 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_angles.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:934:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 934 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_angles.store), &iter, col_no, &f, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:942:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 942 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_angles.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_torsion_restraints() const': restraints-editor.cc:970:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 970 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_torsions.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:984:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 984 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_torsions.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:999:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 999 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_torsions.store), &iter, col_no, &f, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1008:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1008 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_torsions.store), &iter, col_no, &ii, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1013:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1013 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_torsions.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_plane_restraints() const': restraints-editor.cc:1050:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1050 | bool b = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_planes.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1061:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1061 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_planes.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1072:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1072 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_planes.store), &iter, col_no, &val, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1094:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1094 | b = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_planes.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_chiral_restraints() const': restraints-editor.cc:1105:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1105 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_chirals.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1117:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1117 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_chirals.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1134:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1134 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_chirals.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::pair > coot::restraints_editor::get_atom_info() const': restraints-editor.cc:1178:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1178 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_atoms.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1189:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1189 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_atoms.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1202:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1202 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_atoms.store), &iter, col_no, &i, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1209:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1209 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_atoms.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::pair coot::restraints_editor::get_residue_info() const': restraints-editor.cc:1251:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1251 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_info.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1265:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1265 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_info.store), &iter, col_no, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1280:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1280 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_info.store), &iter, col_no, &ii, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In function 'void restraints_editor_save_restraint_by_widget(GtkWidget*)': restraints-editor.cc:1368:40: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 1368 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(ww), filename.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In function 'void save_monomer_restraints_by_widget(GtkDialog*)': restraints-editor.cc:1386:43: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 1386 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(chooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::delete_restraint(GtkWidget*)': restraints-editor.cc:1423:69: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 1423 | GtkTreeSelection *tree_selection = gtk_tree_view_get_selection(tree_view); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1427:44: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 1427 | gtk_tree_selection_get_selected(tree_selection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:290: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1428:34: warning: 'gboolean gtk_tree_store_remove(GtkTreeStore*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 1428 | gtk_tree_store_remove(tree_store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:95:15: note: declared here 95 | gboolean gtk_tree_store_remove (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::add_restraint(GtkWidget*)': restraints-editor.cc:1456:69: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 1456 | GtkTreeSelection *tree_selection = gtk_tree_view_get_selection(tree_view); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1460:44: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 1460 | gtk_tree_selection_get_selected(tree_selection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1464:34: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 1464 | gtk_tree_store_append(tree_store, &iter, parent); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from testing.hh:26, from testing.cc:33: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from testing.hh:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from user-mods.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o xmap-utils.lo xmap-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-plot-phi-psi.lo rama-plot-phi-psi.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from testing.cc:50: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from testing.cc:60: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c xmap-utils.cc -fPIC -DPIC -o .libs/xmap-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from tomo-tools.cc:36: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o spherical-density.lo spherical-density.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c spherical-density.cc -fPIC -DPIC -o .libs/spherical-density.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from testing.cc:64: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o single-map-properties-dialog.lo single-map-properties-dialog.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c single-map-properties-dialog.cc -fPIC -DPIC -o .libs/single-map-properties-dialog.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o validation.lo validation.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o view.lo view.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation.cc -fPIC -DPIC -o .libs/validation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c view.cc -fPIC -DPIC -o .libs/view.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o widget-from-builder.lo widget-from-builder.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c widget-from-builder.cc -fPIC -DPIC -o .libs/widget-from-builder.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from single-map-properties-dialog.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from tomo-tools.cc:139: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/bash ../src/post-process-coot-wrap-guile.sh coot_wrap_guile_pre.cc coot_wrap_guile.cc adding gtk2 and guile ifdefs from coot_wrap_guile_pre.cc coot_wrap_guile.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_wrap_guile.lo coot_wrap_guile.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_wrap_guile.cc -fPIC -DPIC -o .libs/coot_wrap_guile.o In file included from command-arg.hh:33, from graphics-info.h:66, from spherical-density.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from validation.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from single-map-properties-dialog.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from view.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from widget-from-builder.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from validation.cc:30: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3906, from /usr/include/c++/14/math.h:36, from /usr/include/python3.13/Python.h:22, from sdf-interface.cc:23: In constructor 'constexpr std::pair<_T1, _T2>::pair(_U1&&, _U2&&) [with _U1 = bool; _U2 = clipper::Coord_orth&; typename std::enable_if<(std::_PCC::_MoveConstructiblePair<_U1, _U2>() && std::_PCC::_ImplicitlyMoveConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)' at sdf-interface.cc:413:56: /usr/include/c++/14/bits/stl_pair.h:882:42: warning: 'v' may be used uninitialized [-Wmaybe-uninitialized] 882 | : first(std::forward<_U1>(__x)), second(std::forward<_U2>(__y)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sdf-interface.cc: In function 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)': sdf-interface.cc:403:24: note: 'v' declared here 403 | clipper::Coord_orth v; | ^ testing.cc: In function 'int test_ligand_conformer_torsion_angles()': testing.cc:1631:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1631 | std::pair p = conformer_info[i].get_set_and_real_torsions(itor); | ^ testing.cc: In function 'int test_lsq_plane()': testing.cc:2629:65: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2629 | std::pair d = coot::lsq_plane_deviation(v, pt); | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from spherical-density.cc:32: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from single-map-properties-dialog.hh:32, from single-map-properties-dialog.cc:31: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ single-map-properties-dialog.cc: In function 'void on_colour_chooser_dialog_response(GtkDialog*, int)': single-map-properties-dialog.cc:364:33: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 364 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(dialog), &color); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ single-map-properties-dialog.cc: In function 'void show_map_colour_selector_with_parent(int, GtkWidget*)': single-map-properties-dialog.cc:385:70: warning: 'GtkWidget* gtk_color_chooser_dialog_new(const char*, GtkWindow*)' is deprecated [-Wdeprecated-declarations] 385 | GtkWidget *colour_chooser_dialog = gtk_color_chooser_dialog_new("Test", GTK_WINDOW(parent_window)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:84: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooserdialog.h:38:13: note: declared here 38 | GtkWidget * gtk_color_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ single-map-properties-dialog.cc:392:33: warning: 'void gtk_color_chooser_set_rgba(GtkColorChooser*, const GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 392 | gtk_color_chooser_set_rgba(GTK_COLOR_CHOOSER(colour_chooser_dialog), map_colour_p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:69:10: note: declared here 69 | void gtk_color_chooser_set_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from widget-from-builder.hh:31, from widget-from-builder.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ testing.cc: In function 'int test_ligand_conformer_torsion_angles()': testing.cc:1596:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1596 | int test_ligand_conformer_torsion_angles() { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ testing.cc: In function 'int test_lsq_plane()': testing.cc:2615:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2615 | int test_lsq_plane() { | ^~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootsumo.la -rpath /usr/lib/aarch64-linux-gnu init_coot_as_python_module.lo boids.lo boot-python.lo atom-overlaps.lo git-revision-count.lo scm-boot-guile.lo c-interface-analysis.lo c-interface-bonds.lo c-interface-build.lo c-interface-build-morph.lo c-interface-build-main-chain.lo c-interface-build-side-chain.lo c-interface-build-symmetry.lo c-interface-build-gui.lo c-interface-curlew.lo c-interface-database.lo c-interface-gui.lo c-interface-gtk2.lo c-interface-info.lo c-interface-kk.lo c-interface-image.lo c-interface-ligands-gui.lo c-interface-ligands.lo c-interface-maps.lo c-interface-mmdb.lo c-interface-mogul.lo c-interface-mogul-scripting.lo c-interface-mutate.lo c-interface-ncs.lo c-interface-network.lo c-interface-nucleotides.lo c-interface-pisa.lo c-interface-pisa-gui.lo c-interface-preferences.lo c-interface-python.lo c-interface-refine.lo c-interface-residues.lo c-interface-refmac.lo simple-refmac.lo c-interface-scm.lo c-interface-sequence.lo c-interface-sfs.lo c-interface-sharpen.lo c-interface-superpose.lo c-interface-validate.lo c-interface-view.lo c-interface-widgets.lo c-interface-waters.lo c-interface-waters-gui.lo c-interface.lo c-interface-test.lo cc-interface-alignment.lo cc-interface-graphics.lo cc-interface-merge.lo cc-interface-molecular-representation.lo cc-interface-molecular-symmetry.lo cc-interface-scripting.lo cc-interface-map-utils.lo cc-interface-png.lo cc-interface-user-defined-atom-colours.lo cfc.lo change-dir.lo cmtz-interface.lo command-line.lo command-line-extern.lo coot-application.lo coot-colour.lo coot-align.lo coot-nomenclature.lo coot-glue-gtk2.lo coot-glue-gtk2-python.lo coot-hydrogens.lo coot-phi-psi.lo coot_pythonmodule.lo coot-setup-python.lo coot_wrap_guile.lo curlew-gtk4.lo draw.lo graphics-info-tick-function.lo drag-and-drop.lo draw-generic-display-objects.lo dynamic-validation.lo eyes.lo event-controller-callbacks.lo fit-loop-gui.lo flev.lo framebuffer.lo old-generic-display-object.lo gaussian-surface.lo generic-objects.lo geometry-graphs.lo get-residue.lo get-monomer.lo gl-rama-plot.lo globjects.lo globularize.lo graphics-info.lo graphics-info-defines.lo graphics-info-defines-gtk4.lo graphics-info-draw.lo graphics-info-draw-models.lo graphics-info-graphs.lo graphics-info-gui.lo graphics-info-init.lo graphics-info-intermediate.lo graphics-info-modelling.lo graphics-info-navigation.lo graphics-info-navigation-gtk2.lo graphics-info-preferences.lo graphics-info-network.lo graphics-info-mutate.lo graphics-info-lsq.lo graphics-info-opengl.lo graphics-info-pick.lo graphics-info-refmac.lo graphics-info-render.lo graphics-info-render-scene.lo graphics-info-residues.lo graphics-info-refine.lo graphics-info-scripting.lo graphics-info-state.lo graphics-info-statics.lo graphics-info-superpose.lo graphics-info-trackball.lo graphics-ligand-view.lo graphics-ligand-mesh-molecule.lo gl-matrix.lo gtkglarea-rama-plot.lo gtk-manual.lo gtk-widget-conversion-utils.lo gtk-utils.lo HUDMesh.lo HUDTextureMesh.lo Instanced-Markup-Mesh.lo init-from-gtkbuilder.lo key-bindings.lo LinesMesh.lo LigandViewMesh.lo lbg-callbacks-outer.lo lbg-interface.lo Model.lo make-a-dodec.lo matrix-utils.lo Mesh.lo Mesh-from-glTF.lo Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds.lo meshed-generic-display-object.lo model-molecule-meshes.lo molecule-class-info.lo molecule-class-info-alignment.lo molecule-class-info-analysis.lo molecule-class-info-bonds.lo molecule-class-info-build.lo molecule-class-info-maps.lo molecule-class-info-maps-2.lo molecule-class-info-molecular-symmetry.lo molecule-class-info-kdc.lo molecule-class-info-dots.lo molecule-class-info-dots-internal.lo molecule-class-info-other.lo molecule-class-info-mutate.lo molecule-class-info-residues.lo molecule-class-info-refine.lo molecule-class-info-kk.lo molecule-class-info-surface.lo molecule-class-info-string.lo molecule-class-info-patterson.lo molecule-class-info-ncs.lo molecule-class-info-mol-tris.lo molecule-class-info-widget-work.lo molecule-class-info-geometry.lo molecular-mesh-generator.lo molecular-mesh-generator-mol-tris.lo obj_loader.lo pick.lo positron-plot.lo probe-clash-score.lo protein_db-interface.lo pumpkin.lo python-classes.lo Particle.lo read-phs.lo read-cif.lo rama_mousey.lo rama_plot_with_canvas.lo text-rendering-utils.lo restraints-editor.lo rsr-functions.lo screendump-tga.lo sdf-interface.lo sequence-view.lo seq-view-interface.lo Shader.lo sound.lo startup-utils.lo testing.lo testing-2.lo Texture.lo TextureMesh.lo tomo-tools.lo trackball.lo user-mods.lo xmap-utils.lo rama-plot-phi-psi.lo spherical-density.lo single-map-properties-dialog.lo validation.lo view.lo widget-from-builder.lo -fopenmp ../api/libcoot-api.la ../pli/libcoot-pli.la ../layla/libcoot-layla.la ../ligand/libcoot-res-tracer.la ../ligand/libcoot-ligand.la ../validation-graphs/libcoot-validation-graphs.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../compat/libcoot-compat.la -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lm -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lfreetype -lsqlite3 -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o 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.libs/c-interface-residues.o .libs/c-interface-refmac.o .libs/simple-refmac.o .libs/c-interface-scm.o .libs/c-interface-sequence.o .libs/c-interface-sfs.o .libs/c-interface-sharpen.o .libs/c-interface-superpose.o .libs/c-interface-validate.o .libs/c-interface-view.o .libs/c-interface-widgets.o .libs/c-interface-waters.o .libs/c-interface-waters-gui.o .libs/c-interface.o .libs/c-interface-test.o .libs/cc-interface-alignment.o .libs/cc-interface-graphics.o .libs/cc-interface-merge.o .libs/cc-interface-molecular-representation.o .libs/cc-interface-molecular-symmetry.o .libs/cc-interface-scripting.o .libs/cc-interface-map-utils.o .libs/cc-interface-png.o .libs/cc-interface-user-defined-atom-colours.o .libs/cfc.o .libs/change-dir.o .libs/cmtz-interface.o .libs/command-line.o .libs/command-line-extern.o .libs/coot-application.o .libs/coot-colour.o .libs/coot-align.o .libs/coot-nomenclature.o .libs/coot-glue-gtk2.o .libs/coot-glue-gtk2-python.o .libs/coot-hydrogens.o .libs/coot-phi-psi.o .libs/coot_pythonmodule.o .libs/coot-setup-python.o .libs/coot_wrap_guile.o .libs/curlew-gtk4.o .libs/draw.o .libs/graphics-info-tick-function.o .libs/drag-and-drop.o .libs/draw-generic-display-objects.o .libs/dynamic-validation.o .libs/eyes.o .libs/event-controller-callbacks.o .libs/fit-loop-gui.o .libs/flev.o .libs/framebuffer.o .libs/old-generic-display-object.o .libs/gaussian-surface.o .libs/generic-objects.o .libs/geometry-graphs.o .libs/get-residue.o .libs/get-monomer.o .libs/gl-rama-plot.o .libs/globjects.o .libs/globularize.o .libs/graphics-info.o .libs/graphics-info-defines.o .libs/graphics-info-defines-gtk4.o .libs/graphics-info-draw.o .libs/graphics-info-draw-models.o .libs/graphics-info-graphs.o .libs/graphics-info-gui.o .libs/graphics-info-init.o .libs/graphics-info-intermediate.o .libs/graphics-info-modelling.o .libs/graphics-info-navigation.o .libs/graphics-info-navigation-gtk2.o .libs/graphics-info-preferences.o .libs/graphics-info-network.o .libs/graphics-info-mutate.o 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.libs/probe-clash-score.o .libs/protein_db-interface.o .libs/pumpkin.o .libs/python-classes.o .libs/Particle.o .libs/read-phs.o .libs/read-cif.o .libs/rama_mousey.o .libs/rama_plot_with_canvas.o .libs/text-rendering-utils.o .libs/restraints-editor.o .libs/rsr-functions.o .libs/screendump-tga.o .libs/sdf-interface.o .libs/sequence-view.o .libs/seq-view-interface.o .libs/Shader.o .libs/sound.o .libs/startup-utils.o .libs/testing.o .libs/testing-2.o .libs/Texture.o .libs/TextureMesh.o .libs/tomo-tools.o .libs/trackball.o .libs/user-mods.o .libs/xmap-utils.o .libs/rama-plot-phi-psi.o .libs/spherical-density.o .libs/single-map-properties-dialog.o .libs/validation.o .libs/view.o .libs/widget-from-builder.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/api/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/layla/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/density-contour/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/build/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/skeleton/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/angles/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/high-res/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/protein_db/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootilus/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/compat/.libs ../api/.libs/libcoot-api.so ../pli/.libs/libcoot-pli.so ../layla/.libs/libcoot-layla.so ../ligand/.libs/libcoot-res-tracer.so ../ligand/.libs/libcoot-ligand.so ../validation-graphs/.libs/libcoot-validation-graphs.so ../lidia-core/.libs/libcoot-lidia-core.so ../density-contour/.libs/libcoot-isosurface.so ../build/.libs/libcoot-cabuild.so ../skeleton/.libs/libcoot-skeleton.so ../angles/.libs/libcoot-AngleInfo.so ../db-main/.libs/libcoot-db-main.so ../high-res/.libs/libcoot-high-res.so ../ideal/.libs/libcoot-ideal.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../protein_db/.libs/libcoot-protein-db.so ../cootilus/.libs/libcootilus.so ../cootaneer/.libs/libcootaneer.so ../MoleculesToTriangles/CXXClasses/.libs/libMoleculesToTrianglesCXXClasses.so ../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so ../compat/.libs/libcoot-compat.so -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lfreetype -lsqlite3 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -fopenmp -Wl,-soname -Wl,libcootsumo.so.0 -o .libs/libcootsumo.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcootsumo.so.0" && ln -s "libcootsumo.so.0.0.0" "libcootsumo.so.0") libtool: link: (cd ".libs" && rm -f "libcootsumo.so" && ln -s "libcootsumo.so.0.0.0" "libcootsumo.so") libtool: link: ( cd ".libs" && rm -f "libcootsumo.la" && ln -s "../libcootsumo.la" "libcootsumo.la" ) make all-am make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main.o main.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks.o glade-callbacks.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks-main-window.o glade-callbacks-main-window.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks-preferences.o glade-callbacks-preferences.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks-shader-settings.o glade-callbacks-shader-settings.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o new-startup.o new-startup.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o setup-gui-components.o setup-gui-components.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o create-menu-item-actions.o create-menu-item-actions.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o density-score-by-residue-src.o density-score-by-residue-src.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot.lo coot.cc swig -o coot_wrap_python_pre.cc -DUSE_MOLECULES_TO_TRIANGLES -DCOOT_USE_GTK2_INTERFACE -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/python3.13 -DUSE_PYTHON -DUSE_LIBCURL -I../src -I.. -shadow -python -c++ ../src/coot.i libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot.cc -fPIC -DPIC -o .libs/coot.o In file included from ../coot-utils/coot-map-utils.hh:33, from density-score-by-residue-src.cc:50: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from density-score-by-residue-src.cc:52: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:37, from glade-callbacks-shader-settings.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from glade-callbacks-preferences.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ glade-callbacks-preferences.cc: In function 'void on_preferences_font_size_others_radiobutton_toggled(GtkToggleButton*, gpointer)': glade-callbacks-preferences.cc:1065:43: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1065 | gint ival = gtk_combo_box_get_active(GTK_COMBO_BOX(w)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94, from glade-callbacks-preferences.cc:28: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_font_size_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks-preferences.cc:1080:39: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1080 | gint ival = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_font_colour_own_radiobutton_toggled(GtkCheckButton*, gpointer)': glade-callbacks-preferences.cc:1119:36: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 1119 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(colorbutton), &col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_font_colorbutton_color_set(GtkColorButton*, gpointer)': glade-callbacks-preferences.cc:1135:30: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 1135 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(colorbutton), &col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_bond_width_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks-preferences.cc:1196:33: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1196 | val = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, from glade-callbacks.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from main.cc:75: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from glade-callbacks-main-window.cc:56: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-density-score-by-residue-bin density-score-by-residue-src.o libcootsumo.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../ligand/libcoot-ligand.la ../analysis/libcoot-analysis.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm In file included from command-arg.hh:33, from graphics-info.h:66, from create-menu-item-actions.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from glade-callbacks.cc:53: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from setup-gui-components.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from glade-callbacks-main-window.cc:57: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from main.cc:81: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/bash ../src/post-process-coot-wrap-python.sh gtk2 coot_wrap_python_pre.cc coot_wrap_python.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_wrap_python.lo coot_wrap_python.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_wrap_python.cc -fPIC -DPIC -o .libs/coot_wrap_python.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from new-startup.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from create-menu-item-actions.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from glade-callbacks.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from main.cc:23: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from create-menu-item-actions.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ glade-callbacks.cc: In function 'void on_save_coords_filechooser_dialog_response(GtkDialog*, int)': glade-callbacks.cc:868:48: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 868 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_save_coords_dialog_save_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:915:67: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 915 | GtkWidget *file_chooser_dialog = gtk_file_chooser_dialog_new("Save Coordinates", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 916 | parent_window, | ~~~~~~~~~~~~~~ 917 | action, | ~~~~~~~ 918 | ("_Cancel"), | ~~~~~~~~~~~~ 919 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 920 | ("_Save"), | ~~~~~~~~~~ 921 | GTK_RESPONSE_YES, | ~~~~~~~~~~~~~~~~~ 922 | NULL); | ~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:131: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from glade-callbacks-main-window.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from main.cc:96: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ create-menu-item-actions.cc: In function 'void on_coords_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:58:50: warning: 'const char* gtk_file_chooser_get_choice(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 58 | const char *r = gtk_file_chooser_get_choice(GTK_FILE_CHOOSER(dialog), "recentering"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:182:22: note: declared here 182 | const char * gtk_file_chooser_get_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:68:50: warning: 'GListModel* gtk_file_chooser_get_files(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 68 | GListModel *lm = gtk_file_chooser_get_files(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:125:22: note: declared here 125 | GListModel * gtk_file_chooser_get_files (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_dataset_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:98:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 98 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_map_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:128:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 128 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:131:65: warning: 'const char* gtk_file_chooser_get_choice(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 131 | const char *response_id_cstr = gtk_file_chooser_get_choice(GTK_FILE_CHOOSER(dialog), "is-diff-map"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:182:22: note: declared here 182 | const char * gtk_file_chooser_get_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void open_coordinates_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:148:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 148 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 149 | parent_window, | ~~~~~~~~~~~~~~ 150 | action, | ~~~~~~~ 151 | ("_Cancel"), | ~~~~~~~~~~~~ 152 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 153 | ("_Open"), | ~~~~~~~~~~ 154 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 155 | NULL); | ~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:131: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:156:40: warning: 'void gtk_file_chooser_set_select_multiple(GtkFileChooser*, gboolean)' is deprecated [-Wdeprecated-declarations] 156 | gtk_file_chooser_set_select_multiple(GTK_FILE_CHOOSER(dialog), TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:98:22: note: declared here 98 | void gtk_file_chooser_set_select_multiple (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:173:31: warning: 'void gtk_file_chooser_add_choice(GtkFileChooser*, const char*, const char*, const char**, const char**)' is deprecated [-Wdeprecated-declarations] 173 | gtk_file_chooser_add_choice(GTK_FILE_CHOOSER(dialog), "recentering", "Recentre", options, labels); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:169:22: note: declared here 169 | void gtk_file_chooser_add_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void open_dataset_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:199:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 199 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | ("_Cancel"), GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ("_Open"), GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:207:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 207 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_phs_coordinates_filechooserdialog1_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:5193:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 5193 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(phs_filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void auto_open_mtz_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:234:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 234 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 | ("_Cancel"), GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 | ("_Open"), GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:243:42: warning: 'gboolean gtk_file_chooser_set_current_folder(GtkFileChooser*, GFile*, GError**)' is deprecated [-Wdeprecated-declarations] 243 | gtk_file_chooser_set_current_folder(GTK_FILE_CHOOSER(dialog), f_dir, &error); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:127:22: note: declared here 127 | gboolean gtk_file_chooser_set_current_folder (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:250:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 250 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void open_map_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:269:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 269 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 270 | parent_window, | ~~~~~~~~~~~~~~ 271 | action, | ~~~~~~~ 272 | ("_Cancel"), | ~~~~~~~~~~~~ 273 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 274 | ("_Open"), | ~~~~~~~~~~ 275 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 276 | NULL); | ~~~~~ glade-callbacks.cc: In function 'void on_screendump_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:5301:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 5301 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(file_chooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:280:31: warning: 'void gtk_file_chooser_add_choice(GtkFileChooser*, const char*, const char*, const char**, const char**)' is deprecated [-Wdeprecated-declarations] 280 | gtk_file_chooser_add_choice(GTK_FILE_CHOOSER(dialog), "is-diff-map", "Is Difference Map", NULL, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:169:22: note: declared here 169 | void gtk_file_chooser_add_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:289:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 289 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_residue_editor_select_monomer_type_ok_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:5473:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 5473 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combo_box)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_cif_dictionary_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:349:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 349 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:354:50: warning: 'const char* gtk_file_chooser_get_choice(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 354 | const char *r = gtk_file_chooser_get_choice(GTK_FILE_CHOOSER(dialog), "create-molecule"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:182:22: note: declared here 182 | const char * gtk_file_chooser_get_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void import_cif_dictionary_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:375:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 375 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 | ("_Cancel"), GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 | ("_Open"), GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:382:31: warning: 'void gtk_file_chooser_add_choice(GtkFileChooser*, const char*, const char*, const char**, const char**)' is deprecated [-Wdeprecated-declarations] 382 | gtk_file_chooser_add_choice(GTK_FILE_CHOOSER(dialog), "create-molecule", "Create Molecule", options, labels); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:169:22: note: declared here 169 | void gtk_file_chooser_add_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:387:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 387 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_export_map_file_chooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6044:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6044 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_geman_mcclure_alpha_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6231:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6231 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_lennard_jones_epsilon_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6247:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6247 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6248:50: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6248 | int active_item_idx = gtk_combo_box_get_active(combobox); // save it for set active item next time | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_rama_restraints_weight_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6258:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6258 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6259:50: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6259 | int active_item_idx = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_torsion_weight_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6270:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6270 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6271:50: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6271 | int active_item_idx = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_overall_weight_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6282:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6282 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_simple_refmac_mtz_file_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:6480:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 6480 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(w), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_simple_refmac_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6494:43: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6494 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_save_state_dialog_response(GtkDialog*, int)': create-menu-item-actions.cc:579:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 579 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6514:42: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6514 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(file_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6515:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6515 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(file_combobox), file_name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void save_state_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:600:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 600 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Save State", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 601 | parent_window, | ~~~~~~~~~~~~~~ 602 | action, | ~~~~~~~ 603 | ("Cancel"), | ~~~~~~~~~~~ 604 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 605 | ("Save"), | ~~~~~~~~~ 606 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 607 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6516:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6516 | gtk_combo_box_set_active(GTK_COMBO_BOX(file_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:611:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 611 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_save_views_dialog_response(GtkDialog*, int)': create-menu-item-actions.cc:623:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 623 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_save_views_clicked(GtkButton*, gpointer)': create-menu-item-actions.cc:636:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 636 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Save Views", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 637 | parent_window, | ~~~~~~~~~~~~~~ 638 | action, | ~~~~~~~ 639 | ("Cancel"), | ~~~~~~~~~~~ 640 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 641 | ("Save"), | ~~~~~~~~~ 642 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 643 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:647:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 647 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_cif_dictionary_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6585:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6585 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_validation_graph_model_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6607:37: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6607 | if (gtk_combo_box_get_active_iter(self, &iter)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6609:49: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6609 | gtk_tree_model_get(gtk_combo_box_get_model(self),&iter,1,&new_active_model,-1); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6609:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 6609 | gtk_tree_model_get(gtk_combo_box_get_model(self),&iter,1,&new_active_model,-1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_validation_graph_chain_id_combobox_changed(GtkComboBoxText*, gpointer)': glade-callbacks.cc:6619:66: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6619 | auto chain_id = std::string(gtk_combo_box_text_get_active_text(self)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_ramachandran_plot_molecule_chooser_ok_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:6698:37: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6698 | if (gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6700:49: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6700 | gtk_tree_model_get(gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)),&iter,1,&imol_active,-1); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6700:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 6700 | gtk_tree_model_get(gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)),&iter,1,&imol_active,-1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_run_script_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:1108:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 1108 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void run_script_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:1131:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 1131 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Run Script File", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 1132 | parent_window, | ~~~~~~~~~~~~~~ 1133 | action, | ~~~~~~~ 1134 | ("_Cancel"), | ~~~~~~~~~~~~ 1135 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 1136 | ("_Open"), | ~~~~~~~~~~ 1137 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 1138 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from glade-callbacks-main-window.cc:59: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ create-menu-item-actions.cc: In function 'void screenshot_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:2240:38: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 2240 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(file_chooser), "coot-screendump.tga"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void show_validation_graphs_dialog(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:2393:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2393 | gtk_combo_box_set_active(GTK_COMBO_BOX(model_combobox), imol); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void ramachandran_plot_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:2408:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2408 | gtk_combo_box_set_active(GTK_COMBO_BOX(model_combobox), imol_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from setup-gui-components.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-main-window.cc: In function 'void on_save_coordinates_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:403:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 403 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-main-window.cc: In function 'void on_dataset_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:432:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 432 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-main-window.cc: In function 'void on_map_name_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:463:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 463 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void setup_validation_graph_dialog()': setup-gui-components.cc:162:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 162 | gtk_combo_box_set_model(GTK_COMBO_BOX(model_combobox),GTK_TREE_MODEL(graphics_info_t::validation_graph_model_list)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:163:31: warning: 'void gtk_combo_box_set_id_column(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 163 | gtk_combo_box_set_id_column(GTK_COMBO_BOX(model_combobox),0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:142:15: note: declared here 142 | void gtk_combo_box_set_id_column (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void setup_ramachandran_plot_chooser_dialog()': setup-gui-components.cc:170:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 170 | gtk_combo_box_set_model(GTK_COMBO_BOX(model_combobox), GTK_TREE_MODEL(graphics_info_t::ramachandran_plot_model_list)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:171:31: warning: 'void gtk_combo_box_set_id_column(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 171 | gtk_combo_box_set_id_column(GTK_COMBO_BOX(model_combobox),0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:142:15: note: declared here 142 | void gtk_combo_box_set_id_column (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void attach_css_style_class_to_overlays()': setup-gui-components.cc:188:36: warning: 'void gtk_css_provider_load_from_data(GtkCssProvider*, const char*, gssize)' is deprecated: Use 'gtk_css_provider_load_from_string' instead [-Wdeprecated-declarations] 188 | gtk_css_provider_load_from_data (provider, ".mainWindowOverlayChild { background: rgba(0,0,0,0.7); }", -1); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:99: /usr/include/gtk-4.0/gtk/gtkcssprovider.h:49:18: note: declared here 49 | void gtk_css_provider_load_from_data (GtkCssProvider *css_provider, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In lambda function: setup-gui-components.cc:191:62: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 191 | GtkStyleContext *context = gtk_widget_get_style_context(widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:192:38: warning: 'void gtk_style_context_add_provider(GtkStyleContext*, GtkStyleProvider*, guint)' is deprecated [-Wdeprecated-declarations] 192 | gtk_style_context_add_provider (context, GTK_STYLE_PROVIDER (provider), GTK_STYLE_PROVIDER_PRIORITY_APPLICATION); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:267: /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:64:6: note: declared here 64 | void gtk_style_context_add_provider (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:193:35: warning: 'void gtk_style_context_add_class(GtkStyleContext*, const char*)' is deprecated [-Wdeprecated-declarations] 193 | gtk_style_context_add_class (context, "mainWindowOverlayChild"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:90:10: note: declared here 90 | void gtk_style_context_add_class (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void add_python_scripting_entry_completion(GtkWidget*)': setup-gui-components.cc:215:61: warning: 'GtkEntryCompletion* gtk_entry_completion_new()' is deprecated [-Wdeprecated-declarations] 215 | GtkEntryCompletion *completion = gtk_entry_completion_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:66:21: note: declared here 66 | GtkEntryCompletion *gtk_entry_completion_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:216:45: warning: 'void gtk_entry_completion_set_popup_completion(GtkEntryCompletion*, gboolean)' is deprecated [-Wdeprecated-declarations] 216 | gtk_entry_completion_set_popup_completion(completion, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:108:21: note: declared here 108 | void gtk_entry_completion_set_popup_completion (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:217:40: warning: 'void gtk_entry_completion_set_text_column(GtkEntryCompletion*, int)' is deprecated [-Wdeprecated-declarations] 217 | gtk_entry_completion_set_text_column(completion, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:127:21: note: declared here 127 | void gtk_entry_completion_set_text_column (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:218:47: warning: 'void gtk_entry_completion_set_minimum_key_length(GtkEntryCompletion*, int)' is deprecated [-Wdeprecated-declarations] 218 | gtk_entry_completion_set_minimum_key_length(completion, 2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:85:21: note: declared here 85 | void gtk_entry_completion_set_minimum_key_length (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:219:28: warning: 'void gtk_entry_set_completion(GtkEntry*, GtkEntryCompletion*)' is deprecated [-Wdeprecated-declarations] 219 | gtk_entry_set_completion(GTK_ENTRY(entry), completion); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkentry.h:160:21: note: declared here 160 | void gtk_entry_set_completion (GtkEntry *entry, | ^~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:286:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 286 | GtkListStore *store = gtk_list_store_new(1, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ setup-gui-components.cc:290:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 290 | gtk_list_store_append( store, &iter ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:293:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 293 | gtk_list_store_set( store, &iter, 0, c.c_str(), -1 ); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ setup-gui-components.cc:296:34: warning: 'void gtk_entry_completion_set_model(GtkEntryCompletion*, GtkTreeModel*)' is deprecated [-Wdeprecated-declarations] 296 | gtk_entry_completion_set_model(completion, GTK_TREE_MODEL(store)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:74:21: note: declared here 74 | void gtk_entry_completion_set_model (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: link: g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-density-score-by-residue-bin density-score-by-residue-src.o ./.libs/libcootsumo.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-extras.so ../coords/.libs/libcoot-coords.so ../mini-mol/.libs/libcoot-mini-mol.so ../ligand/.libs/libcoot-ligand.so ../analysis/.libs/libcoot-analysis.so ../db-main/.libs/libcoot-db-main.so ../ideal/.libs/libcoot-ideal.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so ../cootaneer/.libs/libcootaneer.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from probe-clash-score.hh:32, from c-interface-ligands-swig.hh:35, from coot_wrap_python.cc:3466: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from new-startup.cc:29: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ new-startup.cc: In function 'void init_framebuffers(GtkWidget*)': new-startup.cc:60:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 60 | gtk_widget_get_allocation(GTK_WIDGET(glarea), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,--export-dynamic -Wl,-z,relro -o Coot main.o glade-callbacks.o glade-callbacks-main-window.o glade-callbacks-preferences.o glade-callbacks-shader-settings.o new-startup.o setup-gui-components.o create-menu-item-actions.o libcootsumo.la ../density-contour/libcoot-isosurface.la ../layla/libcoot-layla.la ../coot-utils/libcoot-map-utils.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lcurl -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lepoxy -L/usr/lib/aarch64-linux-gnu -lpython3.13 libtool: link: g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,--export-dynamic -Wl,-z -Wl,relro -o .libs/Coot main.o glade-callbacks.o glade-callbacks-main-window.o glade-callbacks-preferences.o glade-callbacks-shader-settings.o new-startup.o setup-gui-components.o create-menu-item-actions.o ./.libs/libcootsumo.so ../density-contour/.libs/libcoot-isosurface.so ../layla/.libs/libcoot-layla.so ../coot-utils/.libs/libcoot-map-utils.so ../coords/.libs/libcoot-coords.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lcurl -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lepoxy -L/usr/lib/aarch64-linux-gnu -lpython3.13 -fopenmp /bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined libcootsumo.la ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../geometry/libcoot-geometry.la ../pli/libcoot-pli.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o _coot.la -rpath /usr/lib/python3/dist-packages coot.lo coot_wrap_python.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot.o .libs/coot_wrap_python.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/src/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcootsumo.so ../coot-utils/.libs/libcoot-coord-utils.so ../coords/.libs/libcoot-coords.so ../geometry/.libs/libcoot-geometry.so ../pli/.libs/libcoot-pli.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot.so.0 -o .libs/_coot.so.0.0.0 libtool: link: (cd ".libs" && rm -f "_coot.so.0" && ln -s "_coot.so.0.0.0" "_coot.so.0") libtool: link: (cd ".libs" && rm -f "_coot.so" && ln -s "_coot.so.0.0.0" "_coot.so") libtool: link: ( cd ".libs" && rm -f "_coot.la" && ln -s "../_coot.la" "_coot.la" ) make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' Making all in ui make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_build --buildsystem cmake cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/coot-1.1.09+dfsg -B/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/cootapi.dir/build.make CMakeFiles/cootapi.dir/depend make -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/build make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o [ 1%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp [ 1%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/cootapi.dir/DependInfo.cmake "--color=" [ 2%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -c /usr/share/nanobind/src/nb_func.cpp [ 2%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -c /usr/share/nanobind/src/nb_type.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -c /usr/share/nanobind/src/nb_enum.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -c /usr/share/nanobind/src/nb_ndarray.cpp make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/cootapi.dir/build.make CMakeFiles/cootapi.dir/build make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o [ 2%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/cod-types.cc [ 2%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -c /usr/share/nanobind/src/nb_static_property.cpp [ 2%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -c /usr/share/nanobind/src/common.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/svg-molecule.cc [ 3%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o [ 3%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o [ 3%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -c /usr/share/nanobind/src/error.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD 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-I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXCircleNode.cpp [ 7%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCoord.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCreator.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCreator.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCreator.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXCreator.cpp [ 8%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXException.cpp [ 8%] Building CXX object 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-I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXSphereElement.cpp [ 10%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereNode.cpp.o /usr/bin/c++ 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXSphereTriangle.cpp [ 11%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB 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-I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp [ 11%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.cpp.o /usr/bin/c++ 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-I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/BallsPrimitive.cpp [ 14%] Building CXX object 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp [ 14%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ColorRule.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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-I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/DisplayPrimitive.cpp [ 17%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ElectrostaticColorScheme.cpp.o /usr/bin/c++ 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-I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/RepresentationInstance.cpp [ 21%] Building CXX object 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-I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/SecondaryColorScheme.cpp [ 22%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/SolidColorRule.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK 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-I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Vector2.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Vector2.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Vector2.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/Vector2.cpp [ 23%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/Vector3.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/VertexColorNormalPrimitive.cpp [ 24%] Building C object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/lfit.c.o /usr/bin/cc -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL 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/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/lfit.c [ 24%] Building CXX object CMakeFiles/cootapi.dir/api/rigid-body-fit.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/blender-mesh.cc.o -MF CMakeFiles/cootapi.dir/api/blender-mesh.cc.o.d -o CMakeFiles/cootapi.dir/api/blender-mesh.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/blender-mesh.cc [ 24%] Building CXX object CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o -MF CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o.d -o CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/add-terminal-residue.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/api/rigid-body-fit.hh:7, from /build/reproducible-path/coot-1.1.09+dfsg/api/rigid-body-fit.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 25%] Building CXX object CMakeFiles/cootapi.dir/api/interfaces.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/interfaces.cc.o -MF CMakeFiles/cootapi.dir/api/interfaces.cc.o.d -o CMakeFiles/cootapi.dir/api/interfaces.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/interfaces.cc [ 25%] Building CXX object CMakeFiles/cootapi.dir/api/instancing.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-colour.cc.o -MF CMakeFiles/cootapi.dir/api/coot-colour.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-colour.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-colour.cc [ 26%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc [ 26%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-backup.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB 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CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/api/add-terminal-residue.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds-instanced.cc [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-change-chain-id.cc [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-moltris.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc:37: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-validation.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-moltris.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:174, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc:38: /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-merge-molecules.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds.cc:39: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-refine.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds-instanced.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-change-chain-id.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-validation.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-merge-molecules.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-refine.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-replace-fragment.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-blender.cc [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-blender.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-replace-fragment.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-blender.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-blender.cc:3: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-gltf.cc [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-bucca-ml-growing.cc [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-maps.cc [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-mmrrcc.cc [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-superpose.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-modelling.cc [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-gltf.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o -MF CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o.d -o CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/phi-psi-prob.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-bucca-ml-growing.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc:40: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -MF CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o.d -o CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/moorhen-h-bonds.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -MF CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o.d -o CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/rama-plot-phi-psi.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-mmrrcc.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-maps.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-superpose.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/wligand.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-modelling.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/moorhen-h-bonds.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/daca.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/daca.cc.o -MF CMakeFiles/cootapi.dir/analysis/daca.cc.o.d -o CMakeFiles/cootapi.dir/analysis/daca.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/daca.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:6: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/daca.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o -MF CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o.d -o CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/kolmogorov.cc [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/stats.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/stats.cc.o -MF CMakeFiles/cootapi.dir/analysis/stats.cc.o.d -o CMakeFiles/cootapi.dir/analysis/stats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o -MF CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o.d -o CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/bfkurt.cc [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/mogul.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/mogul.cc.o -MF CMakeFiles/cootapi.dir/analysis/mogul.cc.o.d -o CMakeFiles/cootapi.dir/analysis/mogul.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/mogul.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/kolmogorov.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o -MF CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o.d -o CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/b-factor-histogram.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/mogul.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o -MF CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o.d -o CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/typed-distances.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/mogul.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/b-factor-histogram.cc:288: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/cablam.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/cablam.cc.o -MF CMakeFiles/cootapi.dir/analysis/cablam.cc.o.d -o CMakeFiles/cootapi.dir/analysis/cablam.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/cablam.cc [ 35%] Building CXX object CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o -MF CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/density-contour-triangles.cc /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc: In member function 'float molecules_container_t::fit_to_map_by_random_jiggle_with_blur_using_cid(int, int, const std::string&, float, int, float)': /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:414:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 414 | auto p = coot::util::mean_and_variance(xmap); | ^ [ 35%] Building CXX object CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o -MF CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o.d -o CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/Vectors.cpp [ 35%] Building CXX object CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o -MF CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o.d -o CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/CIsoSurface.cpp In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/density-contour/density-contour-triangles.cc:155: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 36%] Building CXX object CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o -MF CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/occlusion.cc [ 36%] Building CXX object CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o -MF CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/gaussian-surface.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/density-contour/CIsoSurface.cpp:1244: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 36%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/quat.cc [ 36%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/mgtree.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/density-contour/gaussian-surface.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 37%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/cartesian.cc [ 37%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/geomutil.cc [ 37%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/matrix.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o -MF CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o.d -o CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/skeleton/dm-utils.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o -MF CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o.d -o CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/skeleton/BuildCas.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o -MF CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o.d -o CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/skeleton/graphical_skel.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/ideal/pepflip.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/pepflip.cc.o -MF CMakeFiles/cootapi.dir/ideal/pepflip.cc.o.d -o CMakeFiles/cootapi.dir/ideal/pepflip.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/pepflip.cc [ 39%] Building CXX object CMakeFiles/cootapi.dir/ideal/parallel-planes.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/ng.cc.o -MF CMakeFiles/cootapi.dir/ideal/ng.cc.o.d -o CMakeFiles/cootapi.dir/ideal/ng.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/parallel-planes.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 39%] Building CXX object CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o -MF CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o.d -o CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/torsion-bonds.cc [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o -MF CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o.d -o CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/chi-squareds.cc [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o -MF CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o.d -o CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/trans-peptide.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc:50: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o -MF CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o.d -o CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/make-restraints.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/parallel-planes.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/torsion-bonds.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc: In member function 'std::pair coot::simple_restraint::distortion(mmdb::Atom**, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc:4068:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4068 | coot::simple_restraint::distortion(mmdb::PAtom *atoms, const double &lj_epsilon) const { | ^~~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -MF CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o.d -o CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/pull-restraint.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chi-squareds.cc:41: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/neutron.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/neutron.cc.o -MF CMakeFiles/cootapi.dir/ideal/neutron.cc.o.d -o CMakeFiles/cootapi.dir/ideal/neutron.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/neutron.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/trans-peptide.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/make-restraints.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/pull-restraint.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc: In member function 'void coot::restraints_container_t::analyze_for_bad_restraints(coot::restraint_type_t, double)': /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc:2354:97: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2354 | std::pair distortion_pair = rest.distortion(atom, lennard_jones_epsilon); // 2nd arg is not used for bonds | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/neutron.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -MF CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o.d -o CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/coot-compare-residues.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/link-restraints.cc [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/mods.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/mods.cc.o -MF CMakeFiles/cootapi.dir/ideal/mods.cc.o.d -o CMakeFiles/cootapi.dir/ideal/mods.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/mods.cc [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o -MF CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o.d -o CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints-kk.cc [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/chirals.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/chirals.cc.o -MF CMakeFiles/cootapi.dir/ideal/chirals.cc.o.d -o CMakeFiles/cootapi.dir/ideal/chirals.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/coot-compare-residues.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/link-restraints.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/gradients.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/gradients.cc.o -MF CMakeFiles/cootapi.dir/ideal/gradients.cc.o.d -o CMakeFiles/cootapi.dir/ideal/gradients.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/gradients.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mods.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints-kk.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -MF CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o.d -o CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/flanking.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/flanking.cc.o -MF CMakeFiles/cootapi.dir/ideal/flanking.cc.o.d -o CMakeFiles/cootapi.dir/ideal/flanking.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/flanking.cc [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/distortion.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/distortion.cc.o -MF CMakeFiles/cootapi.dir/ideal/distortion.cc.o.d -o CMakeFiles/cootapi.dir/ideal/distortion.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/distortion.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/gradients.cc:39: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -MF CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o.d -o CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint-kk.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/distortion.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -MF CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o.d -o CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/flanking.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -MF CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o.d -o CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/phi-psi.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/lograma.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/lograma.cpp.o -MF CMakeFiles/cootapi.dir/ideal/lograma.cpp.o.d -o CMakeFiles/cootapi.dir/ideal/lograma.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/lograma.cpp In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint-kk.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o -MF CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o.d -o CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/process-dfs-in-range.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 46%] Building CXX object CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -MF CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o.d -o CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.cc [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/align-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/align-utils.cc.o -MF CMakeFiles/cootapi.dir/utils/align-utils.cc.o.d -o CMakeFiles/cootapi.dir/utils/align-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/align-utils.cc [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o -MF CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o.d -o CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/atomic-numbers.cc [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/backward.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/backward.cpp.o -MF CMakeFiles/cootapi.dir/utils/backward.cpp.o.d -o CMakeFiles/cootapi.dir/utils/backward.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/backward.cpp In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/atomic-numbers.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/colour-holder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -MF CMakeFiles/cootapi.dir/utils/colour-holder.cc.o.d -o CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/colour-holder.cc [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -MF CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o.d -o CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-fasta.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-fasta.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/coot-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -MF CMakeFiles/cootapi.dir/utils/coot-utils.cc.o.d -o CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:37: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/dodec.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/dodec.cc.o -MF CMakeFiles/cootapi.dir/utils/dodec.cc.o.d -o CMakeFiles/cootapi.dir/utils/dodec.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/dodec.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1393:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1393 | const zo::rama_table_set &zorts) const { | ^~~~~ [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/radix.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/radix.cc.o -MF CMakeFiles/cootapi.dir/utils/radix.cc.o.d -o CMakeFiles/cootapi.dir/utils/radix.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/radix.cc [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o -MF CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o.d -o CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/gdk-keysyms.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.cc:59: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o -MF CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o.d -o CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/hsv-rgb.cc [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o -MF CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o.d -o CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/pir-alignment.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/process-dfs-in-range.cc:37: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/gdk-keysyms.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/hsv-rgb.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o -MF CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o.d -o CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/setup-syminfo.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/pir-alignment.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/split-indices.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/split-indices.cc.o -MF CMakeFiles/cootapi.dir/utils/split-indices.cc.o.d -o CMakeFiles/cootapi.dir/utils/split-indices.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/split-indices.cc [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/logging.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/logging.cc.o -MF CMakeFiles/cootapi.dir/utils/logging.cc.o.d -o CMakeFiles/cootapi.dir/utils/logging.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/logging.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:871:71: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 871 | std::pair grads = zorts.df(pp, rt); | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/setup-syminfo.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 50%] Building CXX object CMakeFiles/cootapi.dir/utils/threads.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/threads.cc.o -MF CMakeFiles/cootapi.dir/utils/threads.cc.o.d -o CMakeFiles/cootapi.dir/utils/threads.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/threads.cc [ 50%] Building CXX object CMakeFiles/cootapi.dir/utils/win-compat.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/win-compat.cc.o -MF CMakeFiles/cootapi.dir/utils/win-compat.cc.o.d -o CMakeFiles/cootapi.dir/utils/win-compat.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/win-compat.cc [ 50%] Building CXX object CMakeFiles/cootapi.dir/db-main/db-strands.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/db-main/db-strands.cc.o -MF CMakeFiles/cootapi.dir/db-main/db-strands.cc.o.d -o CMakeFiles/cootapi.dir/db-main/db-strands.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-strands.cc [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o -MF CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o.d -o CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/residue-distortions.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/threads.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-strands.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o -MF CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o.d -o CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.cc [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o -MF CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o.d -o CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/sequence-assignment.cc [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/high-res.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/high-res.cc.o -MF CMakeFiles/cootapi.dir/high-res/high-res.cc.o.d -o CMakeFiles/cootapi.dir/high-res/high-res.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/high-res.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o -MF CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o.d -o CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/flev-annotations.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/residue-distortions.cc:21: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/high-res.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/high-res.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/high-res/sequence-assignment.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -MF CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o.d -o CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/protein-ligand-interactions.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -MF CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o.d -o CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/sdf-interface.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cmtz-interface.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:833:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 833 | coot::crankshaft::optimize_a_triple::df(const gsl_vector *v, | ^~~~ /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/lidia-core-functions.cc [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/pli/sdf-interface.cc:147: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/merge-atom-selections.cc [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-least-squares.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/diff-diff-map-peaks.cc [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/gltf-export.cc [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -MF CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o.d -o CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shiftfield.cpp In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/merge-atom-selections.cc:34: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/stack-and-pair.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/spherical-harmonics.cc [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/peak-search-from-list.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/helix-analysis.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shiftfield.h:31, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::F_phi; C = clipper::datatypes::Compute_scale_u_aniso >; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/segmap.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cablam-markup.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/fib-sphere.cc [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/find-water-baddies.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc:915: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/blob-line.cc [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-glyco.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cablam-markup.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-glyco.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/find-water-baddies.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils.cc:34: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/blob-line.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/merge-molecules.cc [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/texture-as-floats.cc [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.cc [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/water-coordination.cc [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bonded-pairs.cc [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/c-beta-deviations.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/texture-as-floats.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tools.cc [ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-rama.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-rama.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/secondary-structure-headers.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB 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/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/polar-atoms.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/helix-like.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/plane-utils.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/pae.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/pae.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/pae.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/pae.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pae.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-tree-extras.cc [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-heavy.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-tree-extras.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pae.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/jed-flip.cc [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pepflip-using-difference-map.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-heavy.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-overlaps.cc [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bricks.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pepflip-using-difference-map.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-overlaps.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/jed-flip.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/jed-flip.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/mutate.cc [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/elastic.cc [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/elastic.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/mutate.cc:644: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-h-bonds.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:39: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:973:63: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:3842: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/core/hkl_compute.h:48, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:682:39: required from here 682 | fphis_out[hri] = fphis_in[hkl]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-nucleotides.cc In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:23: /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = const double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4416:45: required from here 4416 | data.push_back(std::make_pair(A_data[i].first, y)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4501:87: required from here 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4656:69: required from here 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/glyco-torsions.cc [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/fast-eigens.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-nucleotides.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/glyco-torsions.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-shelx-ins.cc /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:973:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^~~~ [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contacts-by-bricks.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-shelx-ins.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In lambda function: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'void coot::util::reverse_map(clipper::Xmap*)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4713:55: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4713 | std::pair mv = mean_and_variance(xmap); | ^ [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contacts-by-bricks.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/lsq-improve.cc [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/trim.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/trim.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/trim.cc [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o -MF CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In lambda function: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-lsq.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In lambda function: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4501:87: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.h:31, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:153:81: required from here 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/trim.cc:21: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:209:29: required from here 209 | fphi[ih] = fc[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-lsq.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:153:67: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:209:16: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-heavy.hh:28, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/strand-fragments.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc: In constructor 'coot::util::fffear_search::fffear_search(mmdb::Manager*, int, const clipper::Xmap&, float, bool)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc:159:70: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 159 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bonded-atoms.cc [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/fragment-container.cc [ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/positron.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/positron.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/positron.cc [ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/maps-spherical.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 121 | coot::shift_field_b_factor_refinement(const clipper::HKL_data< clipper::datatypes::F_sigF > &fo0, | ^~~~ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:209:29: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/positron.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/maps-spherical.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/peak-search.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/xmap-stats.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/sfcalc-genmap.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/reduce.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contact-info.cc [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/hole.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/hole.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/reduce.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/slurp-map.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/sfcalc-genmap.cc:30: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_abcd_from_phifom; T = clipper::datatypes::ABCD]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::ABCD' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc: In member function 'std::pair coot::hole::optimize_point(const clipper::Coord_orth&, int)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc:253:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 253 | coot::hole::optimize_point(const clipper::Coord_orth &pt, int selhnd) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/slurp-map.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/exp-fit.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/clipper_instance.h:49, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc:1096:38: required from here 1096 | if (!my_fsigf[ih.hkl()].missing()) { | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cylinder.cc [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cylinder-with-rotation-translation.cc [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/prideout-octasphere.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/oct.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/oct.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/oct.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/oct.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/oct.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shapes.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/simple-mesh.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o -MF CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o.d -o CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo-bonds.cc [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o -MF CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o.d -o CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines_ext.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo-bonds.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'bool coot::util::map_fill_from_mtz(clipper::Xmap*, std::string, std::string, std::string, std::string, short int, float, short int, float)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:59:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 59 | coot::util::map_fill_from_mtz(clipper::Xmap *xmap, | ^~~~ [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/utils.cc.o -MF CMakeFiles/cootapi.dir/coords/utils.cc.o.d -o CMakeFiles/cootapi.dir/coords/utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/utils.cc [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.cc [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -MF CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o.d -o CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc:48: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.cc:46: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc:50: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/Cartesian.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -MF CMakeFiles/cootapi.dir/coords/Cartesian.cc.o.d -o CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Cartesian.cc [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/loop-path.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/loop-path.cc.o -MF CMakeFiles/cootapi.dir/coords/loop-path.cc.o.d -o CMakeFiles/cootapi.dir/coords/loop-path.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/loop-path.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/coot-close.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/coot-close.cc.o -MF CMakeFiles/cootapi.dir/coords/coot-close.cc.o.d -o CMakeFiles/cootapi.dir/coords/coot-close.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/coot-close.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/cos-sin.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/cos-sin.cc.o -MF CMakeFiles/cootapi.dir/coords/cos-sin.cc.o.d -o CMakeFiles/cootapi.dir/coords/cos-sin.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/cos-sin.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o -MF CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o.d -o CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/rotamer-markup.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o -MF 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o -MF CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o.d -o CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc [ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-link.cc [ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/rotamer-markup.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/main-chain.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/main-chain.cc.o -MF CMakeFiles/cootapi.dir/geometry/main-chain.cc.o.d -o CMakeFiles/cootapi.dir/geometry/main-chain.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/main-chain.cc [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-mon-lib.cc [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-geometry.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-extras.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o -MF CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/dictionary-residue.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-mon-lib.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o -MF CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/dict-utils.cc [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -MF CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o.d -o CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/read-sbase.cc [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o -MF CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o.d -o CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/hydrophobic.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-link.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc:41: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o -MF CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o.d -o CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/energy-lib.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/read-sbase.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-geometry.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/dict-utils.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o -MF CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o.d -o CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/srs-interface.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/dictionary-residue.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/energy-lib.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/srs-interface.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK 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-DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-geometry-mmdb.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o -MF 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dreiding.cc.o -MF CMakeFiles/cootapi.dir/geometry/dreiding.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dreiding.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/dreiding.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o -MF CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o.d -o CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/chem_mods.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/link.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/link.cc.o -MF CMakeFiles/cootapi.dir/geometry/link.cc.o.d -o CMakeFiles/cootapi.dir/geometry/link.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/link.cc [ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o -MF CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o.d -o CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o -c 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-I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -MF CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o.d -o CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/glyco-tools.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/link.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o -MF CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o.d -o CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/mol-utils-2.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/glyco-tools.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 82%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-donor-acceptors.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o -MF CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o.d -o CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/intercept-3GP.cc [ 82%] Building CXX object CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o -MF CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o.d -o CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/build/CalphaBuild.cc [ 82%] Building CXX object CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o -MF CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o.d -o CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.hh:22, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 83%] Building CXX object CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o -MF CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o.d -o CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 83%] Building CXX object CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o -MF CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o.d -o CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/atom-quads.cc [ 83%] Building CXX object CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/cootilus/cootilus-build.cpp /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.cc: In member function 'std::pair coot::minimol::molecule::get_pos() const': /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.cc:1654:36: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1654 | coot::minimol::molecule::get_pos() const { | ^~~~~ [ 83%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/cootilus/nautilus-join.cpp [ 84%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nautilus-ss-find.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nautilus-tools.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nautilus-tools.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nautilus-tools.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/cootilus/nautilus-tools.cpp [ 85%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nucleicacid_db.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nucleicacid_db.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nucleicacid_db.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nucleicacid_db.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/cootilus/nucleicacid_db.cpp [ 85%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/lbg-shared.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 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85%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/lbg-molfile.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/lig-build.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/lig-build.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/lig-build.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.cc [ 86%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/get-residue.cc [ 86%] Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o -MF CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o.d -o CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/angles/AngleInfo-angle-torsions-autogen.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 86%] Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o -MF CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o.d -o CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/angles/AngleInfo-theta_2-autogen.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 87%] Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o -MF CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o.d -o CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/angles/AngleInfo.cc [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/dipole.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/dipole.cc.o -MF CMakeFiles/cootapi.dir/ligand/dipole.cc.o.d -o CMakeFiles/cootapi.dir/ligand/dipole.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/dipole.cc [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o -MF CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o.d -o CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/chi-angles.cc [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -MF CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o.d -o CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/monomer-utils.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-score-card.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/dipole.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o -MF CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o.d -o CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/chi-angles-autogen.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o -MF CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o.d -o CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/helix-placement.cc [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-score-card.hh:31, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-score-card.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -MF CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o.d -o CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/dunbrack.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/chi-angles.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:60: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/dunbrack.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:69: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:72: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -MF CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o.d -o CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/primitive-chi-angles.cc /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc: In function 'std::pair > coot::get_clash_score(const minimol::molecule&, atom_selection_container_t, int)': /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc:596:76: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 596 | std::pair rotamer_info = a_rotamer.get_pos(); | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/helix-placement.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o -MF CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer-tables.cc [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o -MF CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o.d -o CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer-tables.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:55: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -MF CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o.d -o CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/richardson-rotamers.cc [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligands-db.cc [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc:38: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o -MF CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o.d -o CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc:1293:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~~ /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc: In member function 'std::pair coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager*) const': /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc:176:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 176 | coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager *mol) const { | ^~~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o -MF CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o.d -o CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/base-pairing.cc /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc:2408:64: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2408 | std::pair mi = s.median_and_iqr(); | ^ [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o -MF CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ideal-rna.cc [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o -MF CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o.d -o CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/wiggly-ligand.cc [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o -MF CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o.d -o CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/torsion-general.cc [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/joining-residues.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/joining-residues.cc.o -MF 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/richardson-rotamer.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/side-chain.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/side-chain.cc.o -MF CMakeFiles/cootapi.dir/ligand/side-chain.cc.o.d -o CMakeFiles/cootapi.dir/ligand/side-chain.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o -MF CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/rigid-body.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o -MF CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o.d -o CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/smith-waterman.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rigid-body.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rigid-body.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/joining-residues.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/wiggly-ligand.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -MF CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o.d -o CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc [ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -MF CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o.d -o CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/fast-ss-search.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/smith-waterman.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/rotamer.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer.cc [ 95%] Building CXX object CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -MF CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o.d -o CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/src/coot-nomenclature.cc [ 95%] Building CXX object CMakeFiles/cootapi.dir/db-main/db-main.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/db-main/db-main.cc.o -MF CMakeFiles/cootapi.dir/db-main/db-main.cc.o.d -o CMakeFiles/cootapi.dir/db-main/db-main.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-main.cc [ 95%] Building CXX object CMakeFiles/cootapi.dir/compat/getopt.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/compat/getopt.cc.o -MF CMakeFiles/cootapi.dir/compat/getopt.cc.o.d -o CMakeFiles/cootapi.dir/compat/getopt.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/compat/getopt.cc /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc: In constructor 'coot::tube_finder_t::tube_finder_t(const clipper::Xmap&)': /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc:45:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mv = util::mean_and_variance(blurred_xmap); | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.hh:22, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/fast-ss-search.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 95%] Building CXX object CMakeFiles/cootapi.dir/compat/getopt1.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/compat/getopt1.cc.o -MF CMakeFiles/cootapi.dir/compat/getopt1.cc.o.d -o CMakeFiles/cootapi.dir/compat/getopt1.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/compat/getopt1.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-main.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 96%] Building CXX object CMakeFiles/cootapi.dir/src/gl-matrix.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/cootapi.dir/ligand/dipole.cc.o "CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o" "CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o" "CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o" "CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o" CMakeFiles/cootapi.dir/ligand/ligand.cc.o "CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o" "CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o" CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o "CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o" "CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o" "CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o" "CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o" "CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o" "CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o" CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o "CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o" "CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o" "CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o" 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'/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/chapi.dir/DependInfo.cmake "--color=" make -f CMakeFiles/findwaters.dir/build.make CMakeFiles/findwaters.dir/depend make -f CMakeFiles/coot-mini-rsr.dir/build.make CMakeFiles/coot-mini-rsr.dir/depend make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg 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/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/coot-mini-rsr.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/test-molecules-container.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/findligand.dir/build.make CMakeFiles/findligand.dir/build make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/chapi.dir/build.make CMakeFiles/chapi.dir/build make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/test-molecules-container.dir/build.make CMakeFiles/test-molecules-container.dir/build make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object CMakeFiles/findligand.dir/ligand/find-ligand.cc.o 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-Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o -MF CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o.d -o CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-nanobind.cc make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object CMakeFiles/findwaters.dir/ligand/find-waters.cc.o [ 98%] Building CXX object CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/findwaters.dir/ligand/find-waters.cc.o -MF CMakeFiles/findwaters.dir/ligand/find-waters.cc.o.d -o CMakeFiles/findwaters.dir/ligand/find-waters.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/find-waters.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o -MF CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/test-molecules-container.cc [ 98%] Building CXX object CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o -MF CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o.d -o CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc [ 98%] Building CXX object CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o [ 98%] Building CXX object CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o -MF CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o -MF CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/lucrezia-tests.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/find-waters.cc:45: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/find-ligand.cc:46: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:56: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:58: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/lucrezia-tests.hh:5, from /build/reproducible-path/coot-1.1.09+dfsg/api/lucrezia-tests.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-nanobind.cc:9: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.hh:23, from /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/test-molecules-container.cc:7: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:174, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:60: /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:66: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 98%] Linking CXX executable findwaters /usr/bin/cmake -E cmake_link_script CMakeFiles/findwaters.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/findwaters.dir/link.d "CMakeFiles/findwaters.dir/ligand/find-waters.cc.o" -o findwaters -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target findwaters In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:41: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ [ 98%] Linking CXX executable findligand /usr/bin/cmake -E cmake_link_script CMakeFiles/findligand.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/findligand.dir/link.d "CMakeFiles/findligand.dir/ligand/find-ligand.cc.o" -o findligand -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target findligand [ 99%] Linking CXX executable coot-mini-rsr /usr/bin/cmake -E cmake_link_script CMakeFiles/coot-mini-rsr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/coot-mini-rsr.dir/link.d "CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o" -o coot-mini-rsr -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target coot-mini-rsr [ 99%] Linking CXX shared module chapi.cpython-313-aarch64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/chapi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/chapi.dir/link.d -Wl,-z,relro -shared -o chapi.cpython-313-aarch64-linux-gnu.so "CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o" -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu: libnanobind-static.a libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so /usr/lib/aarch64-linux-gnu/libdw.so /usr/lib/aarch64-linux-gnu/libelf.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target chapi [100%] Linking CXX executable test-molecules-container /usr/bin/cmake -E cmake_link_script CMakeFiles/test-molecules-container.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test-molecules-container.dir/link.d "CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o" "CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o" "CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o" -o test-molecules-container -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libssm.so /usr/lib/aarch64-linux-gnu/libclipper-minimol.so /usr/lib/aarch64-linux-gnu/libclipper-mmdb.so /usr/lib/aarch64-linux-gnu/libclipper-cif.so /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libclipper-contrib.so /usr/lib/libsfftw.so /usr/lib/libsrfftw.so /usr/lib/aarch64-linux-gnu/libmmdb2.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libgsl.so /usr/lib/aarch64-linux-gnu/libgslcblas.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libgemmi_cpp.a /usr/lib/aarch64-linux-gnu/libdw.so /usr/lib/aarch64-linux-gnu/libelf.so /usr/lib/aarch64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [100%] Built target test-molecules-container make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' Making install in auxil make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making install in catcheck make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' Making install in rama make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' Making install in sec-str make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' Making install in strand-analysis make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' Making install in vectors make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making install in scheme make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/scheme' /usr/bin/install -c -m 644 0-auto-rot.scm coot-utils.scm get-ebi.scm mutate.scm background-demo.scm demo-script.scm gtkin.scm my-readline.scm bit.scm extra-top-level.scm hello.scm raster3d.scm brute-lsqman.scm file-utils.scm junk.scm refmac.scm coot-gui.scm filter.scm libcheck.scm simple.scm coot.scm get-ebi.save.scm local-code.scm trivial.scm gap.scm remote-control.scm povray.scm coot-lsq.scm shelx.scm group-settings.scm fitting.scm americanisms.scm tips.scm tips-gui.scm generic-objects.scm cns2coot.scm extensions.scm ncs.scm create-server.scsh coot-crash-catcher.scm '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/scheme' /usr/bin/install -c -m 644 snarf-coot-docs.scm clear-backup.scm bones-reader.scm matrices.scm fascinating-things.scm shelx-extensions.scm parse-pisa-xml.scm check-for-updates.scm 3d-generator-import.scm gui-hole.scm gui-prosmart.scm get-recent-pdbe.scm json-reader.scm jligand.scm jligand-gui.scm redefine-functions.scm user-define-restraints.scm template-key-bindings.scm gui-add-linked-cho.scm ligand-check.scm run-mogul.scm contact-score-isolated-ligand.scm enhanced-ligand.scm gui-ligand-sliders.scm dictionary-generators.scm cho-restraints-from-models.scm interactive-nudge-residues.scm acedrg-link.scm add-linked-cho.scm find-baddies.scm sharpen-blur.scm dynamic-atom-overlaps-and-other-outliers.scm '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/scheme' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' Making install in python make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' /usr/bin/install -c -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py coot_fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py coot_ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_generator_3d_import.py gui_hole.py gui_prosmart.py get_recent_pdbe.py jligand.py jligand_gui.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' /usr/bin/install -c -m 644 coot_redefine_functions.py user_define_restraints.py template_key_bindings.py gui_add_linked_cho.py coot_ligand_check.py run_mogul.py coot_contact_score_isolated_ligand.py gui_contact_score_isolated_ligand.py dictionary_generators.py cho_restraints_from_models.py interactive_nudge_residues.py pdbe_validation_data.py pathology_plots.py ligand_validation_sliders.py enhanced_ligand.py gui_ligand_sliders.py coot_sharpen_blur.py coot_acedrg_link.py coot_toolbuttons.py rcrane_loader.py add_linked_cho.py coot_find_baddies.py coot_chemical_feature_clusters.py coot_res_spec_utils.py coot_output_to_window.py populate_python_menus.py coot_hole.py refine.py what_check.py coot_testing_utils.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' Byte-compiling python modules... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py Byte-compiling python modules (optimized versions) ... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' Making install in pdb-templates make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 ASN-NAG-via-NAG-ASN.pdb pyranose-pyranose-via-BETA1-4.pdb pyranose-pyranose-via-ALPHA1-2.pdb pyranose-pyranose-via-ALPHA1-3.pdb pyranose-pyranose-via-ALPHA1-6.pdb SIA-pyranose-via-ALPHA2-3.pdb link-by-torsion-to-pyranose-core-ALPHA1-2.tab link-by-torsion-to-pyranose-core-ALPHA1-3.tab link-by-torsion-to-FUC-core-ALPHA1-3.tab link-by-torsion-to-FUC-core-ALPHA1-2.tab link-by-torsion-to-FUC-core-ALPHA1-6.tab link-by-torsion-to-NAG-core-NAG-SER.tab link-by-torsion-to-pyranose-core-ALPHA1-6.tab link-by-torsion-to-pyranose-core-ALPHA2-3.tab link-by-torsion-to-pyranose-core-BETA1-2.tab link-by-torsion-to-pyranose-core-BETA1-3.tab link-by-torsion-to-pyranose-core-BETA1-4.tab link-by-torsion-to-pyranose-core-BETA1-6.tab link-by-torsion-to-pyranose-core-NAG-ASN.tab link-by-torsion-to-pyranose-core-XYP-BMA.tab NAG-decorations.tab BMA-decorations.tab MAN-decorations.tab GLC-decorations.tab GAL-decorations.tab FUC-decorations.tab FUL-decorations.tab XYP-decorations.tab theor-helix-70.pdb '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' Making install in macros make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' Making install in compat make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-compat.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-compat.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-compat.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-compat.so.0.0.0 libcoot-compat.so.0 || { rm -f libcoot-compat.so.0 && ln -s libcoot-compat.so.0.0.0 libcoot-compat.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-compat.so.0.0.0 libcoot-compat.so || { rm -f libcoot-compat.so && ln -s libcoot-compat.so.0.0.0 libcoot-compat.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-compat.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-compat.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/compat' /usr/bin/install -c -m 644 coot-getopt.h coot-sysdep.h getopt_int.h sleep-fixups.h dirent.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/compat' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' Making install in utils make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-utils.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-utils.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-utils.so.0.0.0 libcoot-utils.so.0 || { rm -f libcoot-utils.so.0 && ln -s libcoot-utils.so.0.0.0 libcoot-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-utils.so.0.0.0 libcoot-utils.so || { rm -f libcoot-utils.so && ln -s libcoot-utils.so.0.0.0 libcoot-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-utils.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/utils' /usr/bin/install -c -m 644 coot-utils.hh coot-fasta.hh dodec.hh win-compat.hh ctpl_stl.h ctpl.h pir-alignment.hh align-utils.hh split-indices.hh radix.hh logging.hh insertion-sort.hh backward.hpp colour-holder.hh setup-syminfo.hh base64-encode-decode.hh xdg-base.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/utils' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' Making install in protein_db make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-protein-db.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-protein-db.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-protein-db.so.0.0.0 libcoot-protein-db.so.0 || { rm -f libcoot-protein-db.so.0 && ln -s libcoot-protein-db.so.0.0.0 libcoot-protein-db.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-protein-db.so.0.0.0 libcoot-protein-db.so || { rm -f libcoot-protein-db.so && ln -s libcoot-protein-db.so.0.0.0 libcoot-protein-db.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-protein-db.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/protein_db' /usr/bin/install -c -m 644 protein_db.h protein_db_utils.h rna_db.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/protein_db' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/protein_db' /usr/bin/install -c -m 644 protein.db '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/protein_db' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' Making install in mini-mol make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-mini-mol.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-mini-mol.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/mini-mol; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/aarch64-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-mini-mol.so.0 -o .libs/libcoot-mini-mol.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-mini-mol.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so.0 || { rm -f libcoot-mini-mol.so.0 && ln -s libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so || { rm -f libcoot-mini-mol.so && ln -s libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-mini-mol.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/mini-mol' /usr/bin/install -c -m 644 mini-mol.hh mini-mol-utils.hh atom-quads.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/mini-mol' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' Making install in geometry make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-geometry.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-geometry.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/geometry; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/aarch64-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/cif-parse.o .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/mol-utils.o .libs/dictionary-residue.o .libs/link.o .libs/glyco-tools.o .libs/dict-utils.o .libs/chem_mods.o .libs/srs-interface.o .libs/protein-donor-acceptors.o .libs/lbg-graph.o .libs/dreiding.o .libs/main-chain.o .libs/residue-and-atom-specs.o .libs/intercept-3GP.o .libs/mol-utils-2.o .libs/hydrophobic.o .libs/cif-parse-link.o .libs/cif-parse-mon-lib.o .libs/read-metals-json.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-mini-mol -lcoot-utils -lcoot-compat -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-geometry.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-geometry.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-geometry.so.0.0.0 libcoot-geometry.so.0 || { rm -f libcoot-geometry.so.0 && ln -s libcoot-geometry.so.0.0.0 libcoot-geometry.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-geometry.so.0.0.0 libcoot-geometry.so || { rm -f libcoot-geometry.so && ln -s libcoot-geometry.so.0.0.0 libcoot-geometry.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-geometry.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-geometry.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/geometry' /usr/bin/install -c -m 644 protein-geometry.hh read-sbase.hh lbg-graph.hh srs-interface.hh dict-utils.hh dict-mismatches.hh energy-lib.hh match-results.hh hb-types.hh main-chain.hh residue-and-atom-specs.hh chem_mods.hh mol-utils.hh mol-utils-2.hh bonded-quad.hh hydrophobic.hh metal-ligand.hh pdbe-chem-comp-atom-depiction.hh pdbx-chem-comp-description-generator.hh gphl-chem-comp-info.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/geometry' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' Making install in lidia-core make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-lidia-core.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-lidia-core.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/lidia-core; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/aarch64-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/lbg-shared.o .libs/lbg-molfile.o .libs/lig-build.o .libs/rdkit-interface.o .libs/cod-types.o .libs/atom-types.o .libs/bond-record-container-t.o .libs/cod-atom-type-t.o .libs/cod-atom-types.o .libs/bond-table-record-t.o .libs/chemical-feature-clusters.o .libs/get-residue.o .libs/svg-molecule.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-utils -lcoot-mini-mol -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lsqlite3 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-lidia-core.so.0 -o .libs/libcoot-lidia-core.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-lidia-core.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so.0 || { rm -f libcoot-lidia-core.so.0 && ln -s libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so || { rm -f libcoot-lidia-core.so && ln -s libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-lidia-core.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/lidia-core' /usr/bin/install -c -m 644 lbg-shared.hh lbg-molfile.hh lig-build.hh rdkit-interface.hh use-rdkit.hh cod-types.hh neighbour-sorter.hh bond-record-container-t.hh bond-table-record-t.hh cod-atom-types.hh cod-atom-type-t.hh primes.hh chemical-feature-clusters.hh third-neighbour-info-t.hh get-residue.hh svg-molecule.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/lidia-core' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' Making install in coot-utils make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-coord-utils.la libcoot-coord-extras.la libcoot-map-utils.la libcoot-map-heavy.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-coord-utils.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo glyco-torsions.lo coot-least-squares.lo atom-overlaps.lo reduce.lo atom-selection-container.lo contact-info.lo coot-shelx-ins.lo secondary-structure-headers.lo plane-utils.lo c-beta-deviations.lo lidia-core-functions.lo atom-tools.lo bonded-atoms.lo bricks.lo helix-like.lo merge-atom-selections.lo contacts-by-bricks.lo stack-and-pair.lo fast-eigens.lo strand-fragments.lo sfcalc-genmap.lo cablam-markup.lo coot_shiftfield.lo shiftfield.lo fib-sphere.lo polar-atoms.lo 3d-texture.lo merge-molecules.lo fragment-container.lo mutate.lo merge-C-and-N-terminii.lo cylinder.lo cylinder-with-rotation-translation.lo oct.lo prideout-octasphere.lo simple-mesh.lo shapes.lo cmtz-interface.lo pugixml.lo parse-pisa.lo gltf-export.lo pae.lo ../lidia-core/libcoot-lidia-core.la ../protein_db/libcoot-protein-db.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-utils.o .libs/coot-coord-utils-nucleotides.o .libs/coot-rama.o .libs/coot-h-bonds.o .libs/hole.o .libs/read-sm-cif.o .libs/bonded-pairs.o .libs/helix-analysis.o .libs/elastic.o .libs/glyco-torsions.o .libs/coot-least-squares.o .libs/atom-overlaps.o .libs/reduce.o .libs/atom-selection-container.o .libs/contact-info.o .libs/coot-shelx-ins.o .libs/secondary-structure-headers.o .libs/plane-utils.o .libs/c-beta-deviations.o .libs/lidia-core-functions.o .libs/atom-tools.o .libs/bonded-atoms.o .libs/bricks.o .libs/helix-like.o .libs/merge-atom-selections.o .libs/contacts-by-bricks.o .libs/stack-and-pair.o .libs/fast-eigens.o .libs/strand-fragments.o .libs/sfcalc-genmap.o .libs/cablam-markup.o .libs/coot_shiftfield.o .libs/shiftfield.o .libs/fib-sphere.o .libs/polar-atoms.o .libs/3d-texture.o .libs/merge-molecules.o .libs/fragment-container.o .libs/mutate.o .libs/merge-C-and-N-terminii.o .libs/cylinder.o .libs/cylinder-with-rotation-translation.o .libs/oct.o .libs/prideout-octasphere.o .libs/simple-mesh.o .libs/shapes.o .libs/cmtz-interface.o .libs/pugixml.o .libs/parse-pisa.o .libs/gltf-export.o .libs/pae.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-lidia-core -lcoot-protein-db -lcoot-geometry -lcoot-utils -lcoot-mini-mol -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-utils.so.0 -o .libs/libcoot-coord-utils.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so.0 || { rm -f libcoot-coord-utils.so.0 && ln -s libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so || { rm -f libcoot-coord-utils.so && ln -s libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-utils.la libtool: warning: relinking 'libcoot-coord-extras.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-extras.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo jed-flip.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-extras.o .libs/coot-coord-lsq.o .libs/coot-tree-extras.o .libs/water-coordination.o .libs/lsq-improve.o .libs/coot-coord-utils-glyco.o .libs/jed-flip.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-extras.so.0 -o .libs/libcoot-coord-extras.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-extras.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so.0 || { rm -f libcoot-coord-extras.so.0 && ln -s libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so || { rm -f libcoot-coord-extras.so && ln -s libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-extras.la libtool: warning: relinking 'libcoot-map-utils.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-map-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo pepflip-using-difference-map.lo exp-fit.lo blob-line.lo slurp-map.lo find-water-baddies.lo diff-diff-map-peaks.lo mini-texture.lo positron.lo texture-as-floats.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -lz -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-utils.o .libs/peak-search.o .libs/peak-search-from-list.o .libs/trim.o .libs/xmap-stats.o .libs/maps-spherical.o .libs/pepflip-using-difference-map.o .libs/exp-fit.o .libs/blob-line.o .libs/slurp-map.o .libs/find-water-baddies.o .libs/diff-diff-map-peaks.o .libs/mini-texture.o .libs/positron.o .libs/texture-as-floats.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -lz -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-utils.so.0 -o .libs/libcoot-map-utils.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-utils.so.0.0.0 libcoot-map-utils.so.0 || { rm -f libcoot-map-utils.so.0 && ln -s libcoot-map-utils.so.0.0.0 libcoot-map-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-utils.so.0.0.0 libcoot-map-utils.so || { rm -f libcoot-map-utils.so && ln -s libcoot-map-utils.so.0.0.0 libcoot-map-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-utils.la libtool: warning: relinking 'libcoot-map-heavy.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-map-heavy.la -rpath /usr/lib/aarch64-linux-gnu coot-map-heavy.lo coot-fffear.lo spherical-harmonics.lo segmap.lo libcoot-map-utils.la libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-heavy.o .libs/coot-fffear.o .libs/spherical-harmonics.o .libs/segmap.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-utils -lcoot-coord-utils -lcoot-lidia-core -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-heavy.so.0 -o .libs/libcoot-map-heavy.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-heavy.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so.0 || { rm -f libcoot-map-heavy.so.0 && ln -s libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so || { rm -f libcoot-map-heavy.so && ln -s libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-heavy.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c coot-mmrrcc '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' libtool: warning: './libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: './libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-mmrrcc /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin/coot-mmrrcc /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coot-utils' /usr/bin/install -c -m 644 peak-search.hh coot-trim.hh coot-coord-utils.hh coot-map-utils.hh coot-coord-extras.hh coot-map-heavy.hh coot-lsq-types.h coot-shelx.hh coot-rama.hh xmap-stats.hh coot-h-bonds.hh lsq-improve.hh coot-hole.hh read-sm-cif.hh bonded-pairs.hh tree.hh helix-analysis.hh elastic.hh emma.hh glyco-torsions.hh coot-least-squares.hh coot-density-stats.hh atom-overlaps.hh reduce.hh atom-selection-container.hh contact-info.hh plane-utils.hh secondary-structure-headers.hh c-beta-deviations.hh jed-flip.hh lidia-core-functions.hh bonded-atoms.hh spherical-harmonics.hh helix-like.hh merge-atom-selections.hh contacts-by-bricks.hh amp-reso.hh stack-and-pair.hh atom-tools.hh segmap.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coot-utils' /usr/bin/install -c -m 644 fast-eigens.hh strand-fragments.hh sfcalc-genmap.hh cablam-markup.hh slurp-map.hh merge-molecules.hh arc-info.hh exp-fit.hh coot_shiftfield.h shiftfield.h fib-sphere.hh cis-peptide-info.hh pepflip-using-difference-map.hh blob-line.hh shape-types.hh shapes.hh polar-atoms.hh 3d-texture.hh fragment-container.hh map-index.hh atom-tree.hh jed-flip.hh atom-vertex.hh merge-C-and-N-terminii.hh simple-mesh.hh vertex.hh g_triangle.hh cylinder.hh cylinder-with-rotation-translation.hh oct.hh prideout-octasphere.hh cmtz-interface.hh mtz-column-auto-read.hh pugixml.hpp pugiconfig.hpp find-water-baddies.hh voidp-buffer.hh parse-pisa.hh diff-diff-map-peaks.hh tiny_gltf.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coot-utils' /usr/bin/install -c -m 644 json.hpp stb_image.h stb_image_write.h glyco-tree.hh positron.hh mini-texture.hh texture-as-floats.hh pae.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coot-utils' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' Making install in angles make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-AngleInfo.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-AngleInfo.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so.0 || { rm -f libcoot-AngleInfo.so.0 && ln -s libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so || { rm -f libcoot-AngleInfo.so && ln -s libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-AngleInfo.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/angles' /usr/bin/install -c -m 644 AngleInfo.h ncube.h wrapped-ncube.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/angles' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' Making install in ccp4mg-utils make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libccp4mg-utils.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4mg-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4mg-utils.so.0.0.0 libccp4mg-utils.so.0 || { rm -f libccp4mg-utils.so.0 && ln -s libccp4mg-utils.so.0.0.0 libccp4mg-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4mg-utils.so.0.0.0 libccp4mg-utils.so || { rm -f libccp4mg-utils.so && ln -s libccp4mg-utils.so.0.0.0 libccp4mg-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4mg-utils.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ccp4mg-utils' /usr/bin/install -c -m 644 geomutil.h mgtree.h cartesian.h matrix.h quat.h ppmutil.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ccp4mg-utils' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' Making install in db-main make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-db-main.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-db-main.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/db-main; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-db-main.la -rpath /usr/lib/aarch64-linux-gnu db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/db-main.o .libs/db-strands.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-mini-mol -lcoot-lidia-core -lcoot-coord-utils -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-db-main.so.0 -o .libs/libcoot-db-main.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-db-main.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-db-main.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-db-main.so.0.0.0 libcoot-db-main.so.0 || { rm -f libcoot-db-main.so.0 && ln -s libcoot-db-main.so.0.0.0 libcoot-db-main.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-db-main.so.0.0.0 libcoot-db-main.so || { rm -f libcoot-db-main.so && ln -s libcoot-db-main.so.0.0.0 libcoot-db-main.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-db-main.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-db-main.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/db-main' /usr/bin/install -c -m 644 db-main.hh db-strands.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/db-main' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' Making install in analysis make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-analysis.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-analysis.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/analysis; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-analysis.la -rpath /usr/lib/aarch64-linux-gnu bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo b-factor-histogram.lo daca.lo rna-backbone.lo ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/bfkurt.o .libs/mogul.o .libs/kolmogorov.o .libs/stats.o .libs/cablam.o .libs/typed-distances.o .libs/b-factor-histogram.o .libs/daca.o .libs/rna-backbone.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-utils -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-analysis.so.0 -o .libs/libcoot-analysis.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-analysis.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-analysis.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-analysis.so.0.0.0 libcoot-analysis.so.0 || { rm -f libcoot-analysis.so.0 && ln -s libcoot-analysis.so.0.0.0 libcoot-analysis.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-analysis.so.0.0.0 libcoot-analysis.so || { rm -f libcoot-analysis.so && ln -s libcoot-analysis.so.0.0.0 libcoot-analysis.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-analysis.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-analysis.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c coot-bfactan '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' libtool: warning: 'libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-bfactan /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin/coot-bfactan /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/analysis' /usr/bin/install -c -m 644 bfkurt.hh mogul-interface.hh stats.hh daca.hh rna-backbone.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/analysis' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' Making install in cootaneer make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcootaneer.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcootaneer.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootaneer.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootaneer.so.0.0.0 libcootaneer.so.0 || { rm -f libcootaneer.so.0 && ln -s libcootaneer.so.0.0.0 libcootaneer.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootaneer.so.0.0.0 libcootaneer.so || { rm -f libcootaneer.so && ln -s libcootaneer.so.0.0.0 libcootaneer.so; }; }) libtool: install: /usr/bin/install -c .libs/libcootaneer.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootaneer.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 cootaneer-llk-2.40.dat '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' Making install in ideal make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-ideal.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-ideal.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ideal; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-ideal.la -rpath /usr/lib/aarch64-linux-gnu simple-restraint.lo make-restraints.lo ng.lo chi-squareds.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo process-dfs-in-range.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo pull-restraint.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo neutron.lo ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpng16 -lm -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/simple-restraint.o .libs/make-restraints.o .libs/ng.o .libs/chi-squareds.o .libs/mods.o .libs/distortion.o .libs/chirals.o .libs/flanking.o .libs/gradients.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/process-dfs-in-range.o .libs/extra-restraints-kk.o .libs/simple-restraint-kk.o .libs/torsion-bonds.o .libs/coot-compare-residues.o .libs/link-restraints.o .libs/parallel-planes.o .libs/pull-restraint.o .libs/trans-peptide.o .libs/model-bond-deltas.o .libs/write-png.o .libs/zo-rama.o .libs/crankshaft.o .libs/phi-psi.o .libs/neutron.o -lpthread -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-heavy -lcoot-map-utils -lcoot-geometry -lcoot-coord-extras -lcoot-coord-utils -lcoot-mini-mol -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-ideal.so.0 -o .libs/libcoot-ideal.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-ideal.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ideal.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ideal.so.0.0.0 libcoot-ideal.so.0 || { rm -f libcoot-ideal.so.0 && ln -s libcoot-ideal.so.0.0.0 libcoot-ideal.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ideal.so.0.0.0 libcoot-ideal.so || { rm -f libcoot-ideal.so && ln -s libcoot-ideal.so.0.0.0 libcoot-ideal.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-ideal.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ideal.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c coot-mini-rsr coot-ligand-validation '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' /bin/bash ../libtool --mode=install /usr/bin/install -c mini-rsr-bin coot-ligand-validation-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' libtool: warning: './libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mini-rsr-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/mini-rsr-bin libtool: warning: './libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-ligand-validation-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-ligand-validation-bin /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ideal' /usr/bin/install -c -m 644 test-indexing.hh simple-restraint.hh pepflip.hh regularize-minimol.hh lograma.h zo-rama.hh phi-psi.hh parallel-planes.hh torsion-bonds.hh extra-restraints.hh model-bond-deltas.hh refinement-lights.hh refinement-results-t.hh rama-types.hh new-linked-residue-t.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ideal' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' Making install in ligand make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-ligand.la libcoot-res-tracer.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-ligand.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ligand; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-ligand.la -rpath /usr/lib/aarch64-linux-gnu ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo joining-residues.lo ligand-score-card.lo side-chain-densities.lo tube-finder.lo smith-waterman.lo side-chain.lo refine-isolated-chain.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/trace.o .libs/trace-2.o .libs/multi-peptide.o .libs/ligands-db.o .libs/joining-residues.o .libs/ligand-score-card.o .libs/side-chain-densities.o .libs/tube-finder.o .libs/smith-waterman.o .libs/side-chain.o .libs/refine-isolated-chain.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ideal -lcoot-map-heavy -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-analysis -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-ligand.so.0 -o .libs/libcoot-ligand.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-ligand.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ligand.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ligand.so.0.0.0 libcoot-ligand.so.0 || { rm -f libcoot-ligand.so.0 && ln -s libcoot-ligand.so.0.0.0 libcoot-ligand.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ligand.so.0.0.0 libcoot-ligand.so || { rm -f libcoot-ligand.so && ln -s libcoot-ligand.so.0.0.0 libcoot-ligand.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-ligand.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ligand.la libtool: warning: relinking 'libcoot-res-tracer.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ligand; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-res-tracer.la -rpath /usr/lib/aarch64-linux-gnu libres-tracer.lo rama-rsr-extend-fragments.lo new-residue-by-3-phi-psi.lo dSFMT.lo libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libres-tracer.o .libs/rama-rsr-extend-fragments.o .libs/new-residue-by-3-phi-psi.o .libs/dSFMT.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ligand -lcoot-ideal -lcoot-map-utils -lcoot-coord-utils -lcoot-mini-mol -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-res-tracer.so.0 -o .libs/libcoot-res-tracer.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-res-tracer.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-res-tracer.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so.0 || { rm -f libcoot-res-tracer.so.0 && ln -s libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so || { rm -f libcoot-res-tracer.so && ln -s libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-res-tracer.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-res-tracer.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c coot-findwaters coot-findligand coot-identify-protein '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' /bin/bash ../libtool --mode=install /usr/bin/install -c coot-findligand-bin coot-findwaters-bin coot-make-ligands-db coot-identify-protein-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-findligand-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-findligand-bin libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-findwaters-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-findwaters-bin libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-make-ligands-db /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-make-ligands-db libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-identify-protein-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-identify-protein-bin /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' /usr/bin/install -c -m 644 ligands-2016.db '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' /usr/bin/mkdir -p /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/assign-side-chains && ${TAR-tar} -x -C /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/assign-side-chains -f ../ligand/side-chain-data.tar.gz /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/assign-side-chains' /usr/bin/install -c -m 644 useable-grid-points-nstep=5,box_radius=5.0-charybdis.data '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/assign-side-chains' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ligand' /usr/bin/install -c -m 644 ligand.hh residue_by_phi_psi.hh wligand.hh monomer-utils.hh chi-angles.hh dunbrack.hh helix-placement.hh fast-ss-search.hh rigid-body.hh ideal-rna.hh rotamer.hh richardson-rotamer.hh torsion-general.hh primitive-chi-angles.hh dipole.hh base-pairing.hh backrub-rotamer.hh trace.hh multi-peptide.hh ligands-db.hh scored-coord.hh ligand-score-card.hh scored-molecule.hh map-point-cluster.hh side-chain-densities.hh tube-finder.hh smith-waterman.hh side-chain.hh new-residue-by-3-phi-psi.hh refine-isolated-chain.hh libres-tracer.hh dSFMT.h dSFMT-params.h dSFMT-params19937.h dSFMT-common.h scored-node.hh rama-rsr-extend-fragments.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ligand' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' Making install in coords make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-coords.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-coords.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coords; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coords.la -rpath /usr/lib/aarch64-linux-gnu Bond_lines.lo Cartesian.lo cos-sin.lo phenix-geo-bonds.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo rotamer-markup.lo loop-path.lo rama-plot-phi-psi.lo phi-psi-prob.lo ramachandran-validation.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../cootaneer/libcootaneer.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/phenix-geo-bonds.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/phenix-geo.o .libs/rotamer-markup.o .libs/loop-path.o .libs/rama-plot-phi-psi.o .libs/phi-psi-prob.o .libs/ramachandran-validation.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ligand -lcoot-coord-utils -lcoot-coord-extras -lcoot-geometry -lcoot-mini-mol -lcootaneer -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-coords.so.0 -o .libs/libcoot-coords.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coords.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coords.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coords.so.0.0.0 libcoot-coords.so.0 || { rm -f libcoot-coords.so.0 && ln -s libcoot-coords.so.0.0.0 libcoot-coords.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coords.so.0.0.0 libcoot-coords.so || { rm -f libcoot-coords.so && ln -s libcoot-coords.so.0.0.0 libcoot-coords.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coords.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coords.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coords' /usr/bin/install -c -m 644 Bond_lines.h Cartesian.h cos-sin.h mmdb.hh mmdb-extras.h utils.h mmdb-crystal.h Bond_lines_ext.h coot-close.hh phenix-geo.hh ramachandran-container.hh loop-path.hh rotamer-container.hh graphical-bonds-container.hh graphics-line.hh torus-description.hh rama-plot-phi-psi.hh phi-psi-prob.hh ramachandran-validation.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coords' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' Making install in density-contour make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-isosurface.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-isosurface.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/density-contour; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-isosurface.la -rpath /usr/lib/aarch64-linux-gnu Vectors.lo CIsoSurface.lo density-contour-triangles.lo occlusion.lo gaussian-surface.lo ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o .libs/occlusion.o .libs/gaussian-surface.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coords -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-isosurface.so.0 -o .libs/libcoot-isosurface.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-isosurface.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-isosurface.so.0.0.0 libcoot-isosurface.so.0 || { rm -f libcoot-isosurface.so.0 && ln -s libcoot-isosurface.so.0.0.0 libcoot-isosurface.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-isosurface.so.0.0.0 libcoot-isosurface.so || { rm -f libcoot-isosurface.so && ln -s libcoot-isosurface.so.0.0.0 libcoot-isosurface.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-isosurface.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/density-contour' /usr/bin/install -c -m 644 Vectors.h CIsoSurface.h density-contour-triangles.hh occlusion.hh transfer-occlusions.hh gaussian-surface.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/density-contour' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' Making install in skeleton make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-skeleton.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-skeleton.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/skeleton; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-skeleton.la -rpath /usr/lib/aarch64-linux-gnu dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-AngleInfo -lcoot-ideal -lcoot-geometry -lcoot-coords -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-skeleton.so.0 -o .libs/libcoot-skeleton.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-skeleton.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-skeleton.so.0.0.0 libcoot-skeleton.so.0 || { rm -f libcoot-skeleton.so.0 && ln -s libcoot-skeleton.so.0.0.0 libcoot-skeleton.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-skeleton.so.0.0.0 libcoot-skeleton.so || { rm -f libcoot-skeleton.so && ln -s libcoot-skeleton.so.0.0.0 libcoot-skeleton.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-skeleton.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/skeleton' /usr/bin/install -c -m 644 graphical_skel.h dm-utils.h BuildCas.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/skeleton' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' Making install in high-res make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-high-res.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-high-res.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/high-res; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-high-res.la -rpath /usr/lib/aarch64-linux-gnu high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-coords -lcoot-ligand -lcoot-map-utils -lcoot-lidia-core -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-high-res.so.0 -o .libs/libcoot-high-res.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-high-res.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-high-res.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-high-res.so.0.0.0 libcoot-high-res.so.0 || { rm -f libcoot-high-res.so.0 && ln -s libcoot-high-res.so.0.0.0 libcoot-high-res.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-high-res.so.0.0.0 libcoot-high-res.so || { rm -f libcoot-high-res.so && ln -s libcoot-high-res.so.0.0.0 libcoot-high-res.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-high-res.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-high-res.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/high-res' /usr/bin/install -c -m 644 high-res.hh coot-atom-graph.hh coot-node-info.hh sequence-assignment.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/high-res' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' Making install in build make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/build' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/build' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-cabuild.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-cabuild.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/build; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-cabuild.la -rpath /usr/lib/aarch64-linux-gnu CalphaBuild.lo ../angles/libcoot-AngleInfo.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/CalphaBuild.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-AngleInfo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-cabuild.so.0 -o .libs/libcoot-cabuild.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-cabuild.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-cabuild.so.0.0.0 libcoot-cabuild.so.0 || { rm -f libcoot-cabuild.so.0 && ln -s libcoot-cabuild.so.0.0.0 libcoot-cabuild.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-cabuild.so.0.0.0 libcoot-cabuild.so || { rm -f libcoot-cabuild.so && ln -s libcoot-cabuild.so.0.0.0 libcoot-cabuild.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-cabuild.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/build' /usr/bin/install -c -m 644 CalphaBuild.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/build' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/build' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/build' Making install in MoleculesToTriangles make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making install in CXXSurface make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libMoleculesToTrianglesCXXSurface.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXSurface.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXSurface.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so.0 || { rm -f libMoleculesToTrianglesCXXSurface.so.0 && ln -s libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so || { rm -f libMoleculesToTrianglesCXXSurface.so && ln -s libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so; }; }) libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXSurface.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXSurface.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 ctpl_boost.h CXXCoord.h CXXNewHood.h CXXSphereNode.h CXXTorusElement.h surface.h CXXAlloc.h CXXCreator.h CXXPointyBit.h CXXSphereTriangleEdge.h CXXTorusNode.h TokenIterator.h CXXBall.h CXXException.h CXXQADSurface.h CXXSphereTriangle.h CXXTorusTriangle.h.h CXXChargeTable.h CXXFFTSolventMap.h CXXSpace.h CXXSurface.h CXXTriangle.h CXXCircle.h CXXFortranFile.h CXXSphereElement.h CXXSurfaceMaker.h CXXUtils.h CXXCircleNode.h CXXMatrix4x4.h CXXSphereFlatTriangle.h CXXSurfaceVertex.h CXXVCN.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' Making install in CXXClasses make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libMoleculesToTrianglesCXXClasses.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libMoleculesToTrianglesCXXClasses.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libMoleculesToTrianglesCXXClasses.la -rpath /usr/lib/aarch64-linux-gnu libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-Representation.lo libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo libMoleculesToTrianglesCXXClasses_la-Light.lo libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo libMoleculesToTrianglesCXXClasses_la-ColorRule.lo libMoleculesToTrianglesCXXClasses_la-NRStuff.lo libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo libMoleculesToTrianglesCXXClasses_la-Renderer.lo libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-Quaternion.lo libMoleculesToTrianglesCXXClasses_la-Vector2.lo libMoleculesToTrianglesCXXClasses_la-Vector3.lo libMoleculesToTrianglesCXXClasses_la-lfit.lo libMoleculesToTrianglesCXXClasses_la-DishyBase.lo libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo ../../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o .libs/libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -lMoleculesToTrianglesCXXSurface -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXClasses.so.0 -o .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so.0 || { rm -f libMoleculesToTrianglesCXXClasses.so.0 && ln -s libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so || { rm -f libMoleculesToTrianglesCXXClasses.so && ln -s libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so; }; }) libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXClasses.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXClasses.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 Quaternion.hpp Vector.hpp Vector2.hpp Vector3.hpp AtomPropertyRampColorRule.h DirectedPositionedEntity.h BallsPrimitive.h DiscreteSegment.h Representation.h BondsPrimitive.h DisplayPrimitive.h RepresentationInstance.h BoxSectionPrimitive.h GLIndexType.h RotatedTranslatedScaledEntity.h CXXMatrix.h Light.h SceneSetup.h Callbacks.h LinesPrimitive.h SecondaryColorScheme.h Camera.h MolecularRepresentation.h SolidColorRule.h MolecularRepresentationInstance.h SpherePrimitive.h ColorNamesMap.h MyMolecule.h SticksPrimitive.h ColorRule.h NRStuff.h SurfacePrimitive.h ColorScheme.h Polyhedron.h VertexColorNormalPrimitive.h CompoundSelection.h PositionedEntity.h lfit.h CylinderPoint.h Renderer.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 oglPolyhedron.h CylindersPrimitive.h RendererGL.h RendererGLSL.hpp DishyBase.h FlatFanPrimitive.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 MoleculesToTrianglesCXXClasses.pc '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making install in pli make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-pli.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-pli.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pli; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-pli.la -rpath /usr/lib/aarch64-linux-gnu protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo sdf-interface.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/protein-ligand-interactions.o .libs/flev-annotations.o .libs/pi-stacking.o .libs/sdf-interface.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-geometry -lcoot-lidia-core -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-pli.so.0 -o .libs/libcoot-pli.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-pli.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-pli.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-pli.so.0.0.0 libcoot-pli.so.0 || { rm -f libcoot-pli.so.0 && ln -s libcoot-pli.so.0.0.0 libcoot-pli.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-pli.so.0.0.0 libcoot-pli.so || { rm -f libcoot-pli.so && ln -s libcoot-pli.so.0.0.0 libcoot-pli.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-pli.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-pli.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/pli' /usr/bin/install -c -m 644 flev-annotations.hh protein-ligand-interactions.hh pi-stacking.hh specs.hh sdf-interface.hh sdf-internal.hh sdf-interface-for-export.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/pli' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' Making install in greg-tests make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' Making install in python-tests make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' Making install in cootilus make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcootilus.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcootilus.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootilus.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootilus.so.0.0.0 libcootilus.so.0 || { rm -f libcootilus.so.0 && ln -s libcootilus.so.0.0.0 libcootilus.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootilus.so.0.0.0 libcootilus.so || { rm -f libcootilus.so && ln -s libcootilus.so.0.0.0 libcootilus.so; }; }) libtool: install: /usr/bin/install -c .libs/libcootilus.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootilus.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 nautilus_lib.pdb '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' Making install in pyrogen make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c pyrogen '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot_py_restraints.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot_py_restraints.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot_py_restraints.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0 || { rm -f libcoot_py_restraints.so.0 && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so || { rm -f libcoot_py_restraints.so && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot_py_restraints.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /bin/bash ../libtool --mode=install /usr/bin/install -c _pyrogen_swig.la pyrogen_boost.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_pyrogen_swig.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/pyrogen-swig.o .libs/restraints.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-ideal -lcoot-coord-utils -lcoot-lidia-core -lcoot-analysis -lcoot-geometry -lcoot-utils -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,_pyrogen_swig.so.0 -o .libs/_pyrogen_swig.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_pyrogen_swig.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0 || { rm -f _pyrogen_swig.so.0 && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so || { rm -f _pyrogen_swig.so && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so; }; }) libtool: install: /usr/bin/install -c .libs/_pyrogen_swig.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.la libtool: warning: relinking 'pyrogen_boost.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/restraints-boost.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-pli -lcoot-ideal -lcoot-coord-utils -lcoot-geometry -lcoot-coords -lcoot-lidia-core -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,pyrogen_boost.so.0 -o .libs/pyrogen_boost.so.0.0.0 libtool: install: /usr/bin/install -c .libs/pyrogen_boost.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so.0 || { rm -f pyrogen_boost.so.0 && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so || { rm -f pyrogen_boost.so && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so; }; }) libtool: install: /usr/bin/install -c .libs/pyrogen_boost.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.la libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' make install-exec-hook make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[5]: Nothing to be done for 'install-exec-hook'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' /usr/bin/install -c -m 644 pyrogen.py atom_types.py jay_util.py tautomer.py pyrogen_swig.py coot_git.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' Byte-compiling python modules... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py Byte-compiling python modules (optimized versions) ... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' Making install in data make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' Making install in rama-coeffs make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/rama/zo-tables' /usr/bin/install -c -m 644 all-non-pre-pro.tab coeffsolution.dat '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/rama/zo-tables' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' Making install in cho-models make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-models' /usr/bin/install -c -m 644 model-level-1-NAG-NAG-ASN-ASN.tab model-level-4-BMA-BETA1-6-BMA.tab model-level-5-MAN-ALPHA1-3-BMA.tab model-level-2-FUC-BETA1-3-NAG.tab model-level-4-BMA-BETA1-6-MAN.tab model-level-5-MAN-ALPHA1-3-MAN.tab model-level-2-FUC-BETA1-6-NAG.tab model-level-4-MAN-ALPHA1-3-BMA.tab model-level-5-MAN-ALPHA1-6-BMA.tab model-level-2-FUL-ALPHA1-3-NAG.tab model-level-4-MAN-ALPHA1-4-BMA.tab model-level-5-MAN-ALPHA1-6-MAN.tab model-level-2-FUL-ALPHA1-6-NAG.tab model-level-4-MAN-ALPHA1-6-BMA.tab model-level-5-NAG-BETA1-2-MAN.tab model-level-2-NAG-BETA1-4-NAG.tab model-level-4-MAN-ALPHA1-6-MAN.tab model-level-6-GAL-BETA1-4-NAG.tab model-level-3-BMA-BETA1-3-NAG.tab model-level-4-NAG-BETA1-4-BMA.tab model-level-6-MAN-ALPHA1-2-MAN.tab model-level-3-BMA-BETA1-4-NAG.tab model-level-5-BMA-BETA1-2-BMA.tab model-level-7-GLC-ALPHA1-3-MAN.tab model-level-3-MAN-ALPHA1-4-NAG.tab model-level-5-BMA-BETA1-6-MAN.tab model-level-4-BMA-BETA1-3-BMA.tab model-level-5-MAN-ALPHA1-2-MAN.tab '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-models' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' Making install in cho-acedrg make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-acedrg' /usr/bin/install -c -m 644 BMA-acedrg.cif FUC-acedrg.cif MAN-acedrg.cif NAG-acedrg.cif SIA-acedrg.cif XYP-acedrg.cif '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-acedrg' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' Making install in metal make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal' /usr/bin/install -c -m 644 metal-O-distance.table metal-S-distance.table metal-N-distance.table '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' /usr/bin/install -c -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz ligands.db syminfo.lib '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' Making install in man make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/man' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/man' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'coot.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot.1' /usr/bin/install -c -m 644 'coot-density-score-by-residue.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-density-score-by-residue.1' /usr/bin/install -c -m 644 'coot-compare-dictionaries.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-compare-dictionaries.1' /usr/bin/install -c -m 644 'coot-available-comp-id.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-available-comp-id.1' /usr/bin/install -c -m 644 'coot-bfactan.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-bfactan.1' /usr/bin/install -c -m 644 'coot-fix-nomenclature-errors.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-fix-nomenclature-errors.1' /usr/bin/install -c -m 644 'coot-make-shelx-restraints.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-make-shelx-restraints.1' /usr/bin/install -c -m 644 'coot-mini-rsr.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-mini-rsr.1' /usr/bin/install -c -m 644 'lidia.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/lidia.1' /usr/bin/install -c -m 644 'findwaters.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/findwaters.1' /usr/bin/install -c -m 644 'findligand.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/findligand.1' /usr/bin/install -c -m 644 'layla.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/layla.1' /usr/bin/install -c -m 644 'pyrogen.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/pyrogen.1' /usr/bin/install -c -m 644 'coot-identify-protein.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-identify-protein.1' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/man' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/man' Making install in rama-data make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data' /usr/bin/install -c -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' Making install in doc make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/doc' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/doc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/doc' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/doc' Making install in glTF make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/glTF' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/glTF' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/glTF' /usr/bin/install -c -m 644 grey-eyelashes-many-lashes.glb '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/glTF' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/glTF' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/glTF' Making install in pixmaps make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' Making install in icons make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps/icons' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps/icons' make[5]: Nothing to be done for 'install-exec-am'. for icon in hicolor_apps_48x48_coot.png hicolor_apps_64x64_coot.png hicolor_apps_96x96_coot.png hicolor_apps_256x256_coot.png hicolor_apps_scalable_coot.svg hicolor_apps_scalable_coot-layla.svg hicolor_actions_scalable_Stock-dialog-warning.svg hicolor_actions_scalable_Stock-dialog-information.svg; do \ THEME=` echo $icon | cut -d_ -f1`; \ CONTEXT=` echo $icon | cut -d_ -f2`; \ SIZE=` echo $icon | cut -d_ -f3`; \ ICONFILE=`echo $icon | cut -d_ -f4`; \ mkdir -p /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/icons/$THEME/$SIZE/$CONTEXT; \ /usr/bin/install -c -m 644 ./$icon /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/icons/$THEME/$SIZE/$CONTEXT/$ICONFILE; \ done; make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps/icons' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps/icons' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 add-alt-conf.png dna.svg probe-clash.svg add-alt-conf.svg edit-backbone.svg radacina_handcuffs-small.svg add-peptide-1.png edit-chi.png ramachandran.png add-peptide-1.svg edit-chi.svg refine-1.svg add-water.svg emsley.jpg refine.png anchor.svg env-distances.png regularize-1.svg aniso-atom.png env-distances.svg regularize.png aniso-atom.svg eugene.jpg renumber-residues.svg appointment-new.png flip-peptide.png reset-view-32.png atom-at-pointer.png flip-peptide.svg reset-view-32.svg atom-at-pointer.svg generic-display-objects.svg reset-view.png auto-fit-rotamer.png geom.svg reset-view.svg auto-fit-rotamer.svg ghosts.png residue-info.png azerbaijan2.svg '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 ghosts.svg residue-info.svg azerbaijan.svg gln-asn-b-factors.svg rigid-body.png calculate-ghosts.svg gln-asn-b-factorssvg.svg rigid-body.svg cell+symm.png glyco-structures.svg rotamers.png cell+symm.svg gnome-run.png rotamers.svg change-chain-id.svg go-to-atom.svg rtz.png rrz.png chiral.png go-to-ligand.svg rtz.svg rrz.svg chiral.svg gtk-connect-16.png scroll-wheel.svg connect-to-ccp4.svg gtk-font.png secondary-structure.svg connect-to-oca.svg gtk-open-16.png sequence-view.png connect-to-usf.svg gtk-open-24.png sequence-view.svg connect-to-world.svg gtk-open.png side-chain-180.png kevin.jpg side-chain-180.svg kevin-orig.jpg '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 smiles.png kleywegt.svg smiles.svg map.svg spin-view.png coot-favicon.png merge-molecules.svg spin-view.svg coot-icon.png mutate-auto-fit.svg stereo-view.svg coot-save.png mutate.svg stop.svg coot-save-symm.png panel-screenshot.png temperature.png crosshairs.png peptide-omega.png temperature.svg crosshairs.svg peptide-omega.svg torsion-general.svg delete.png phenixed.svg undo-1.png delete.svg pink-pointer.png undo-1.svg density-fit.svg pink-pointer.svg unknown-blob.png diff-map.png plane-distances.png unknown-blob.svg diff-map.svg plane-distances.svg water-diff-map.svg display-manager.png pointer-distances.png '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 water-drop.svg display-manager.svg pointer-distances.svg edit-undo.png edit-redo.png edit-delete.png python-logo.svg koppi-green-tick-64.png rygle-red-cross-64.png forest51690-dwcheckno-incomplete-64.png go-to-ligand.png go-to-atom.png azerbaijan.png add-water.png mutate.png mutate-auto-fit.png edit-backbone.png torsion-general.png anchor.png regularize-1.png refine-1.png stock-zoom-follow-window-12.svg stock-zoom-follow-window-12.png rama_all.png rama_gly.png rama_pro.png rama_non_gly_pro.png curlew-long.png curlew-128-filled.svg refmac.svg broom.png broom.svg jed-flip-reverse.svg layla_3c.svg layla_4c.svg layla_5c.svg layla_6arom.svg layla_6c.svg layla_7c.svg layla_8c.svg '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 layla_charge_tool.svg layla_delete_hydrogens_tool.svg layla_double_bond.svg layla_format_tool.svg layla_geometry_tool-dark.svg layla_geometry_tool.svg layla_key.svg layla_move_tool.svg layla_single_bond.svg layla_triple_bond.svg rama2_all.png rama2_gly.png rama2_pro.png rama2_non_gly_pro.png rama2_ileval.png rama2_pre_pro.png rama2_non_gly_pro_pre_pro_ileval.png '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/images' /usr/bin/install -c -m 644 coot-1.png '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/images' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' Making install in textures make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/textures' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/textures' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/textures' /usr/bin/install -c -m 644 hud-label-nbc-rama.png hud-tooltip.png happy-face-marker.png sad-face-marker.png rama-plot-pro-normal.png rama-plot-pro-outlier.png rama-plot-gly-normal.png rama-plot-gly-outlier.png rama-plot-other-normal.png rama-plot-other-outlier.png rama-standard-inverted.png hud-label-NBC-small.png hud-label-pull-small.png hud-label-chiral-small.png hud-label-rama-small.png hud-label-rota-small.png anchor-for-fixed-atoms.png refinement-dialog-arrrow-highlighted.png refinement-dialog-arrrow.png angry-diego.svg angry-diego.png chiral-volume-outlier-marker.png '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/textures' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/textures' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/textures' Making install in sounds make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/sounds' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/sounds' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/sounds' /usr/bin/install -c -m 644 sounds.readme 325112_3246658-lq-fisch12345-success.ogg 538546_3725923-lq-Sjonas_Rising.ogg 538548_3725923-lq-Sjonas-Select-3.ogg 538549_3725923-lq-Sjonas-Select-2.ogg 538550_3725923-lq-Sjonas88-Deep-tone.ogg 538551_3725923-lq-Sjonas88-3-select.ogg 538553_3725923-lq-Sjonas88-Stars.ogg 538554_3725923-lq-Sjonas88-success.ogg cdonahueucsd-337132_5955158-lq.ogg pop-dodrio-554022_1433422-lq.ogg '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/sounds' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/sounds' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/sounds' Making install in api make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/api' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/api' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-api.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-api.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/api; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../ligand/libcoot-ligand.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../analysis/libcoot-analysis.la ../density-contour/libcoot-isosurface.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -Wl,-z,relro -o libcoot-api.la -rpath /usr/lib/aarch64-linux-gnu coot-molecule.lo coot-colour.lo add-terminal-residue.lo rama-plot-phi-psi.lo colour-functions.lo coot-molecule-maps.lo coot-molecule-merge-molecules.lo coot-molecule-bonds.lo coot-molecule-validation.lo molecules-container-modelling.lo molecules-container.lo make-a-dodec.lo molecules-container-ligand-fitting.lo phi-psi-prob.lo coot-molecule-moltris.lo coot-molecule-replace-fragment.lo coot-molecule-backup.lo coot-molecule-bonds-instanced.lo molecules-container-mmrrcc.lo molecules-container-gltf.lo coot-molecule-refine.lo molecules-container-superpose.lo rigid-body-fit.lo moorhen-h-bonds.lo molecules-container-bucca-ml-growing.lo instancing.lo molecules-container-maps.lo coot-molecule-change-chain-id.lo blender-mesh.lo coot-molecule-blender.lo molecules-container-blender.lo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-molecule.o .libs/coot-colour.o .libs/add-terminal-residue.o .libs/rama-plot-phi-psi.o .libs/colour-functions.o .libs/coot-molecule-maps.o .libs/coot-molecule-merge-molecules.o .libs/coot-molecule-bonds.o .libs/coot-molecule-validation.o .libs/molecules-container-modelling.o .libs/molecules-container.o .libs/make-a-dodec.o .libs/molecules-container-ligand-fitting.o .libs/phi-psi-prob.o .libs/coot-molecule-moltris.o .libs/coot-molecule-replace-fragment.o .libs/coot-molecule-backup.o .libs/coot-molecule-bonds-instanced.o .libs/molecules-container-mmrrcc.o .libs/molecules-container-gltf.o .libs/coot-molecule-refine.o .libs/molecules-container-superpose.o .libs/rigid-body-fit.o .libs/moorhen-h-bonds.o .libs/molecules-container-bucca-ml-growing.o .libs/instancing.o .libs/molecules-container-maps.o .libs/coot-molecule-change-chain-id.o .libs/blender-mesh.o .libs/coot-molecule-blender.o .libs/molecules-container-blender.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lMoleculesToTrianglesCXXClasses -lMoleculesToTrianglesCXXSurface -lcoot-ligand -lcoot-pli -lcoot-ideal -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-analysis -lcoot-isosurface -lcoot-map-heavy -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coords -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-api.so.0 -o .libs/libcoot-api.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-api.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-api.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-api.so.0.0.0 libcoot-api.so.0 || { rm -f libcoot-api.so.0 && ln -s libcoot-api.so.0.0.0 libcoot-api.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-api.so.0.0.0 libcoot-api.so || { rm -f libcoot-api.so && ln -s libcoot-api.so.0.0.0 libcoot-api.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-api.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-api.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /bin/bash ../libtool --mode=install /usr/bin/install -c _coot_headless_api.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_coot_headless_api.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/api; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined -Wl,-z,relro -o _coot_headless_api.la -rpath /usr/lib/python3/dist-packages _coot_headless_api_la-wrap-coot-api.lo _coot_headless_api_la-molecules-container-swig.lo libcoot-api.la -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/_coot_headless_api_la-wrap-coot-api.o .libs/_coot_headless_api_la-molecules-container-swig.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-api -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot_headless_api.so.0 -o .libs/_coot_headless_api.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_coot_headless_api.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot_headless_api.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot_headless_api.so.0.0.0 _coot_headless_api.so.0 || { rm -f _coot_headless_api.so.0 && ln -s _coot_headless_api.so.0.0.0 _coot_headless_api.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot_headless_api.so.0.0.0 _coot_headless_api.so || { rm -f _coot_headless_api.so && ln -s _coot_headless_api.so.0.0.0 _coot_headless_api.so; }; }) libtool: install: /usr/bin/install -c .libs/_coot_headless_api.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot_headless_api.la libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/install -c -m 644 coot_headless_api.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' Byte-compiling python modules... coot_headless_api.py Byte-compiling python modules (optimized versions) ... coot_headless_api.py /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/api' /usr/bin/install -c -m 644 coot-molecule.hh make-a-dodec.hh lsq-results.hh colour-functions.hh gensurf.hh validation-information.hh coot-colour.hh ghost-molecule-display.hh residue-validation-information.hh molecules-container.hh ncs.hh geometry-graphs.hh header-info.hh rama-plot-phi-psi.hh superpose-results.hh add-terminal-residue.hh interfaces.hh moorhen-h-bonds.hh atom-pull.hh rigid-body-fit.hh svg-store-key.hh phi-psi-prob.hh saved-strand-info.hh simple-molecule.hh generic-3d-lines.hh cell.hh coot-simple-molecule.hh api-cell.hh bond-colour.hh make-instanced-graphical-bonds.hh symmetry-info.hh instancing.hh merge-molecule-results-info-t.hh coot-molecule-bonds.hh clipper-ccp4-map-file-wrapper.hh blender-mesh.hh plain-atom-overlap.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/api' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/api' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/api' Making install in layla make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-layla.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-layla.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/layla; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-layla.la -rpath /usr/lib/aarch64-linux-gnu layla_embedded.lo generators.lo notifier.lo signals.lo state.lo ui.lo utils.lo ligand_editor_canvas/core.lo ligand_editor_canvas.lo ligand_editor_canvas/model.lo ligand_editor_canvas/tools.lo ligand_editor_canvas/render.lo python_utils.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/layla_embedded.o .libs/generators.o .libs/notifier.o .libs/signals.o .libs/state.o .libs/ui.o .libs/utils.o ligand_editor_canvas/.libs/core.o .libs/ligand_editor_canvas.o ligand_editor_canvas/.libs/model.o ligand_editor_canvas/.libs/tools.o ligand_editor_canvas/.libs/render.o .libs/python_utils.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-layla.so.0 -o .libs/libcoot-layla.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-layla.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-layla.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-layla.so.0.0.0 libcoot-layla.so.0 || { rm -f libcoot-layla.so.0 && ln -s libcoot-layla.so.0.0.0 libcoot-layla.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-layla.so.0.0.0 libcoot-layla.so || { rm -f libcoot-layla.so && ln -s libcoot-layla.so.0.0.0 libcoot-layla.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-layla.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-layla.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c layla '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' libtool: warning: 'libcoot-layla.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/layla /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin/layla /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/layla' /usr/bin/install -c -m 644 layla_embedded.hpp generators.hpp notifier.hpp ui.hpp utils.hpp state.hpp ligand_editor_canvas/core.hpp ligand_editor_canvas/model.hpp ligand_editor_canvas/tools.hpp ligand_editor_canvas/render.hpp ligand_editor_canvas.hpp python_utils.hpp '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/layla' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/ui' /usr/bin/install -c -m 644 layla.ui '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/ui' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' Making install in validation-graphs make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-validation-graphs.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-validation-graphs.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/validation-graphs; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-validation-graphs.la -rpath /usr/lib/aarch64-linux-gnu residue-validation-information.lo validation-graph-widget.lo validation-graphs.lo validation-information.lo sequence-view-widget.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/residue-validation-information.o .libs/validation-graph-widget.o .libs/validation-graphs.o .libs/validation-information.o .libs/sequence-view-widget.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ideal -lcoot-map-heavy -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-analysis -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-validation-graphs.so.0 -o .libs/libcoot-validation-graphs.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-validation-graphs.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-validation-graphs.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so.0 || { rm -f libcoot-validation-graphs.so.0 && ln -s libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so || { rm -f libcoot-validation-graphs.so && ln -s libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-validation-graphs.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-validation-graphs.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/test-validation' /usr/bin/install -c -m 644 residue-validation-information.hh validation-information.hh validation-graphs.hh validation-graph-widget.hh sequence-view-widget.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/test-validation' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' Making install in src make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make install-am make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libcootsumo.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcootsumo.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/src; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootsumo.la -rpath /usr/lib/aarch64-linux-gnu init_coot_as_python_module.lo boids.lo boot-python.lo atom-overlaps.lo git-revision-count.lo scm-boot-guile.lo c-interface-analysis.lo c-interface-bonds.lo c-interface-build.lo c-interface-build-morph.lo c-interface-build-main-chain.lo c-interface-build-side-chain.lo c-interface-build-symmetry.lo c-interface-build-gui.lo c-interface-curlew.lo c-interface-database.lo c-interface-gui.lo c-interface-gtk2.lo c-interface-info.lo c-interface-kk.lo c-interface-image.lo c-interface-ligands-gui.lo c-interface-ligands.lo c-interface-maps.lo c-interface-mmdb.lo c-interface-mogul.lo c-interface-mogul-scripting.lo c-interface-mutate.lo c-interface-ncs.lo c-interface-network.lo c-interface-nucleotides.lo c-interface-pisa.lo c-interface-pisa-gui.lo c-interface-preferences.lo c-interface-python.lo c-interface-refine.lo c-interface-residues.lo c-interface-refmac.lo simple-refmac.lo c-interface-scm.lo c-interface-sequence.lo c-interface-sfs.lo c-interface-sharpen.lo c-interface-superpose.lo c-interface-validate.lo c-interface-view.lo c-interface-widgets.lo c-interface-waters.lo c-interface-waters-gui.lo c-interface.lo c-interface-test.lo cc-interface-alignment.lo cc-interface-graphics.lo cc-interface-merge.lo cc-interface-molecular-representation.lo cc-interface-molecular-symmetry.lo cc-interface-scripting.lo cc-interface-map-utils.lo cc-interface-png.lo cc-interface-user-defined-atom-colours.lo cfc.lo change-dir.lo cmtz-interface.lo command-line.lo command-line-extern.lo coot-application.lo coot-colour.lo coot-align.lo coot-nomenclature.lo coot-glue-gtk2.lo coot-glue-gtk2-python.lo coot-hydrogens.lo coot-phi-psi.lo coot_pythonmodule.lo coot-setup-python.lo coot_wrap_guile.lo curlew-gtk4.lo draw.lo graphics-info-tick-function.lo drag-and-drop.lo draw-generic-display-objects.lo dynamic-validation.lo eyes.lo event-controller-callbacks.lo fit-loop-gui.lo flev.lo framebuffer.lo old-generic-display-object.lo gaussian-surface.lo generic-objects.lo geometry-graphs.lo get-residue.lo get-monomer.lo gl-rama-plot.lo globjects.lo globularize.lo graphics-info.lo graphics-info-defines.lo graphics-info-defines-gtk4.lo graphics-info-draw.lo graphics-info-draw-models.lo graphics-info-graphs.lo graphics-info-gui.lo graphics-info-init.lo graphics-info-intermediate.lo graphics-info-modelling.lo graphics-info-navigation.lo graphics-info-navigation-gtk2.lo graphics-info-preferences.lo graphics-info-network.lo graphics-info-mutate.lo graphics-info-lsq.lo graphics-info-opengl.lo graphics-info-pick.lo graphics-info-refmac.lo graphics-info-render.lo graphics-info-render-scene.lo graphics-info-residues.lo graphics-info-refine.lo graphics-info-scripting.lo graphics-info-state.lo graphics-info-statics.lo graphics-info-superpose.lo graphics-info-trackball.lo graphics-ligand-view.lo graphics-ligand-mesh-molecule.lo gl-matrix.lo gtkglarea-rama-plot.lo gtk-manual.lo gtk-widget-conversion-utils.lo gtk-utils.lo HUDMesh.lo HUDTextureMesh.lo Instanced-Markup-Mesh.lo init-from-gtkbuilder.lo key-bindings.lo LinesMesh.lo LigandViewMesh.lo lbg-callbacks-outer.lo lbg-interface.lo Model.lo make-a-dodec.lo matrix-utils.lo Mesh.lo Mesh-from-glTF.lo Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds.lo meshed-generic-display-object.lo model-molecule-meshes.lo molecule-class-info.lo molecule-class-info-alignment.lo molecule-class-info-analysis.lo molecule-class-info-bonds.lo molecule-class-info-build.lo molecule-class-info-maps.lo molecule-class-info-maps-2.lo molecule-class-info-molecular-symmetry.lo molecule-class-info-kdc.lo molecule-class-info-dots.lo molecule-class-info-dots-internal.lo molecule-class-info-other.lo molecule-class-info-mutate.lo molecule-class-info-residues.lo molecule-class-info-refine.lo molecule-class-info-kk.lo molecule-class-info-surface.lo molecule-class-info-string.lo molecule-class-info-patterson.lo molecule-class-info-ncs.lo molecule-class-info-mol-tris.lo molecule-class-info-widget-work.lo molecule-class-info-geometry.lo molecular-mesh-generator.lo molecular-mesh-generator-mol-tris.lo obj_loader.lo pick.lo positron-plot.lo probe-clash-score.lo protein_db-interface.lo pumpkin.lo python-classes.lo Particle.lo read-phs.lo read-cif.lo rama_mousey.lo rama_plot_with_canvas.lo text-rendering-utils.lo restraints-editor.lo rsr-functions.lo screendump-tga.lo sdf-interface.lo sequence-view.lo seq-view-interface.lo Shader.lo sound.lo startup-utils.lo testing.lo testing-2.lo Texture.lo TextureMesh.lo tomo-tools.lo trackball.lo user-mods.lo xmap-utils.lo rama-plot-phi-psi.lo spherical-density.lo single-map-properties-dialog.lo validation.lo view.lo widget-from-builder.lo -fopenmp ../api/libcoot-api.la ../pli/libcoot-pli.la ../layla/libcoot-layla.la ../ligand/libcoot-res-tracer.la ../ligand/libcoot-ligand.la ../validation-graphs/libcoot-validation-graphs.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../compat/libcoot-compat.la -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lm -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lfreetype -lsqlite3 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/init_coot_as_python_module.o .libs/boids.o .libs/boot-python.o .libs/atom-overlaps.o .libs/git-revision-count.o .libs/scm-boot-guile.o .libs/c-interface-analysis.o .libs/c-interface-bonds.o .libs/c-interface-build.o .libs/c-interface-build-morph.o .libs/c-interface-build-main-chain.o .libs/c-interface-build-side-chain.o .libs/c-interface-build-symmetry.o .libs/c-interface-build-gui.o .libs/c-interface-curlew.o .libs/c-interface-database.o .libs/c-interface-gui.o .libs/c-interface-gtk2.o .libs/c-interface-info.o .libs/c-interface-kk.o .libs/c-interface-image.o .libs/c-interface-ligands-gui.o .libs/c-interface-ligands.o .libs/c-interface-maps.o .libs/c-interface-mmdb.o .libs/c-interface-mogul.o .libs/c-interface-mogul-scripting.o .libs/c-interface-mutate.o .libs/c-interface-ncs.o .libs/c-interface-network.o .libs/c-interface-nucleotides.o .libs/c-interface-pisa.o .libs/c-interface-pisa-gui.o .libs/c-interface-preferences.o .libs/c-interface-python.o .libs/c-interface-refine.o .libs/c-interface-residues.o .libs/c-interface-refmac.o .libs/simple-refmac.o .libs/c-interface-scm.o .libs/c-interface-sequence.o .libs/c-interface-sfs.o .libs/c-interface-sharpen.o .libs/c-interface-superpose.o .libs/c-interface-validate.o .libs/c-interface-view.o .libs/c-interface-widgets.o .libs/c-interface-waters.o .libs/c-interface-waters-gui.o .libs/c-interface.o .libs/c-interface-test.o .libs/cc-interface-alignment.o .libs/cc-interface-graphics.o .libs/cc-interface-merge.o .libs/cc-interface-molecular-representation.o .libs/cc-interface-molecular-symmetry.o .libs/cc-interface-scripting.o .libs/cc-interface-map-utils.o .libs/cc-interface-png.o .libs/cc-interface-user-defined-atom-colours.o .libs/cfc.o .libs/change-dir.o .libs/cmtz-interface.o .libs/command-line.o .libs/command-line-extern.o .libs/coot-application.o .libs/coot-colour.o .libs/coot-align.o .libs/coot-nomenclature.o .libs/coot-glue-gtk2.o .libs/coot-glue-gtk2-python.o .libs/coot-hydrogens.o .libs/coot-phi-psi.o .libs/coot_pythonmodule.o .libs/coot-setup-python.o .libs/coot_wrap_guile.o .libs/curlew-gtk4.o .libs/draw.o .libs/graphics-info-tick-function.o .libs/drag-and-drop.o .libs/draw-generic-display-objects.o .libs/dynamic-validation.o .libs/eyes.o .libs/event-controller-callbacks.o .libs/fit-loop-gui.o .libs/flev.o .libs/framebuffer.o .libs/old-generic-display-object.o .libs/gaussian-surface.o .libs/generic-objects.o .libs/geometry-graphs.o .libs/get-residue.o .libs/get-monomer.o .libs/gl-rama-plot.o .libs/globjects.o .libs/globularize.o .libs/graphics-info.o .libs/graphics-info-defines.o .libs/graphics-info-defines-gtk4.o .libs/graphics-info-draw.o .libs/graphics-info-draw-models.o .libs/graphics-info-graphs.o .libs/graphics-info-gui.o .libs/graphics-info-init.o .libs/graphics-info-intermediate.o .libs/graphics-info-modelling.o .libs/graphics-info-navigation.o .libs/graphics-info-navigation-gtk2.o .libs/graphics-info-preferences.o .libs/graphics-info-network.o .libs/graphics-info-mutate.o .libs/graphics-info-lsq.o .libs/graphics-info-opengl.o .libs/graphics-info-pick.o .libs/graphics-info-refmac.o .libs/graphics-info-render.o .libs/graphics-info-render-scene.o .libs/graphics-info-residues.o .libs/graphics-info-refine.o .libs/graphics-info-scripting.o .libs/graphics-info-state.o .libs/graphics-info-statics.o .libs/graphics-info-superpose.o .libs/graphics-info-trackball.o .libs/graphics-ligand-view.o .libs/graphics-ligand-mesh-molecule.o .libs/gl-matrix.o .libs/gtkglarea-rama-plot.o .libs/gtk-manual.o .libs/gtk-widget-conversion-utils.o .libs/gtk-utils.o .libs/HUDMesh.o .libs/HUDTextureMesh.o .libs/Instanced-Markup-Mesh.o .libs/init-from-gtkbuilder.o .libs/key-bindings.o .libs/LinesMesh.o .libs/LigandViewMesh.o .libs/lbg-callbacks-outer.o .libs/lbg-interface.o .libs/Model.o .libs/make-a-dodec.o .libs/matrix-utils.o .libs/Mesh.o .libs/Mesh-from-glTF.o .libs/Mesh-from-graphical-bonds-instanced.o .libs/Mesh-from-graphical-bonds.o .libs/meshed-generic-display-object.o .libs/model-molecule-meshes.o .libs/molecule-class-info.o .libs/molecule-class-info-alignment.o .libs/molecule-class-info-analysis.o .libs/molecule-class-info-bonds.o .libs/molecule-class-info-build.o .libs/molecule-class-info-maps.o .libs/molecule-class-info-maps-2.o .libs/molecule-class-info-molecular-symmetry.o .libs/molecule-class-info-kdc.o .libs/molecule-class-info-dots.o .libs/molecule-class-info-dots-internal.o .libs/molecule-class-info-other.o .libs/molecule-class-info-mutate.o .libs/molecule-class-info-residues.o .libs/molecule-class-info-refine.o .libs/molecule-class-info-kk.o .libs/molecule-class-info-surface.o .libs/molecule-class-info-string.o .libs/molecule-class-info-patterson.o .libs/molecule-class-info-ncs.o .libs/molecule-class-info-mol-tris.o .libs/molecule-class-info-widget-work.o .libs/molecule-class-info-geometry.o .libs/molecular-mesh-generator.o .libs/molecular-mesh-generator-mol-tris.o .libs/obj_loader.o .libs/pick.o .libs/positron-plot.o .libs/probe-clash-score.o .libs/protein_db-interface.o .libs/pumpkin.o .libs/python-classes.o .libs/Particle.o .libs/read-phs.o .libs/read-cif.o .libs/rama_mousey.o .libs/rama_plot_with_canvas.o .libs/text-rendering-utils.o .libs/restraints-editor.o .libs/rsr-functions.o .libs/screendump-tga.o .libs/sdf-interface.o .libs/sequence-view.o .libs/seq-view-interface.o .libs/Shader.o .libs/sound.o .libs/startup-utils.o .libs/testing.o .libs/testing-2.o .libs/Texture.o .libs/TextureMesh.o .libs/tomo-tools.o .libs/trackball.o .libs/user-mods.o .libs/xmap-utils.o .libs/rama-plot-phi-psi.o .libs/spherical-density.o .libs/single-map-properties-dialog.o .libs/validation.o .libs/view.o .libs/widget-from-builder.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-api -lcoot-pli -lcoot-layla -lcoot-res-tracer -lcoot-ligand -lcoot-validation-graphs -lcoot-lidia-core -lcoot-isosurface -lcoot-cabuild -lcoot-skeleton -lcoot-AngleInfo -lcoot-db-main -lcoot-high-res -lcoot-ideal -lcoot-geometry -lcoot-coords -lccp4mg-utils -lcoot-map-heavy -lcoot-map-utils -lcoot-coord-extras -lcoot-coord-utils -lcoot-utils -lcoot-mini-mol -lcoot-analysis -lcoot-protein-db -lcootilus -lcootaneer -lMoleculesToTrianglesCXXClasses -lMoleculesToTrianglesCXXSurface -lcoot-compat -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lpython3.13 -lepoxy -lgsl -lgslcblas -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lfreetype -lsqlite3 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -fopenmp -Wl,-soname -Wl,libcootsumo.so.0 -o .libs/libcootsumo.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcootsumo.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootsumo.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootsumo.so.0.0.0 libcootsumo.so.0 || { rm -f libcootsumo.so.0 && ln -s libcootsumo.so.0.0.0 libcootsumo.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootsumo.so.0.0.0 libcootsumo.so || { rm -f libcootsumo.so && ln -s libcootsumo.so.0.0.0 libcootsumo.so; }; }) libtool: install: /usr/bin/install -c .libs/libcootsumo.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootsumo.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c coot coot-density-score-by-residue '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' /bin/bash ../libtool --mode=install /usr/bin/install -c Coot coot-density-score-by-residue-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' libtool: warning: 'libcootsumo.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../density-contour/libcoot-isosurface.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../layla/libcoot-layla.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coords/libcoot-coords.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/Coot /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/Coot libtool: warning: 'libcootsumo.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coords/libcoot-coords.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ligand/libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-density-score-by-residue-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-density-score-by-residue-bin /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /bin/bash ../libtool --mode=install /usr/bin/install -c _coot.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_coot.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/src; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined libcootsumo.la ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../geometry/libcoot-geometry.la ../pli/libcoot-pli.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o _coot.la -rpath /usr/lib/python3/dist-packages coot.lo coot_wrap_python.lo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot.o .libs/coot_wrap_python.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcootsumo -lcoot-coord-utils -lcoot-coords -lcoot-geometry -lcoot-pli -lcoot-lidia-core -lcoot-utils -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot.so.0 -o .libs/_coot.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_coot.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot.so.0.0.0 _coot.so.0 || { rm -f _coot.so.0 && ln -s _coot.so.0.0.0 _coot.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot.so.0.0.0 _coot.so || { rm -f _coot.so && ln -s _coot.so.0.0.0 _coot.so; }; }) libtool: install: /usr/bin/install -c .libs/_coot.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot.la libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' make install-exec-hook make[6]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[6]: Nothing to be done for 'install-exec-hook'. make[6]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/shaders' /usr/bin/install -c -m 644 atom-label.shader blur.shader central-cube.shader hud-text.shader hud-bars.shader hud-labels.shader map.shader model.shader screen.shader moleculestotriangles.shader instanced-objects.shader particles.shader lines.shader draw-map-cap.shader lines-pulse.shader rama-balls.shader hud-geometry-tooltip-text.shader residue-markers.shader extra-distance-restraints.shader residue-markers-for-ssao.shader model-as-mesh.shader ligand-view.shader symmetry-atoms-lines.shader rama-plot-phi-psi-markers.shader rama-plot-axes-and-ticks.shader hud-image-texture.shader hud-lines.shader depth-of-field.shader blur-x.shader blur-y.shader texture-meshes.shader camera-facing-quad-shader-for-testing.shader outline-of-active-residue.shader meshes.shader meshes-for-shadow-map.shader instanced-meshes-for-shadow-map.shader meshes-with-shadows.shader instanced-meshes-with-shadows.shader meshes-for-ssao.shader effects.shader '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/shaders' /usr/bin/install -c -m 644 9.ssao_blur.shader 9.ssao_geometry.shader 9.ssao.shader instanced-meshes-for-ssao.shader texture-meshes-for-ssao.shader texture-meshes-with-shadows.shader texture-meshes-shadow-map.shader shadow-map-image-texture.shader rotation-centre-cross-hairs-for-ssao.shader background-image.shader '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/shaders' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/glade' /usr/bin/install -c -m 644 geometry_graphs_builder.glade '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/glade' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/install -c -m 644 coot.py coot.pth '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' Byte-compiling python modules... coot.py Byte-compiling python modules (optimized versions) ... coot.py /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/install -c coot.py coot.pth '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot' /usr/bin/install -c -m 644 crunch-model.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' Making install in ui make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/ui' /usr/bin/install -c -m 644 coot-gtk4.ui restraints-editor.ui preferences-gtk4.ui single-map-properties-dialog-gtk4.ui '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/ui' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/appdata' /usr/bin/install -c -m 644 coot.appdata.xml '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/appdata' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/applications' /usr/bin/install -c -m 644 coot.desktop '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/applications' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 standard-residues.pdb '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_install --buildsystem cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/coot-1.1.09+dfsg -B/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootapi.so.1.1 -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootapi.so -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/standard-residues.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/syminfo.lib -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/Makefile -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/Makefile.in -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/theor-helix-70.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-BETA1-4.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-ALPHA1-6.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-ALPHA1-3.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-ALPHA1-2.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-XYP-BMA.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-NAG-ASN.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-6.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-4.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-3.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-2.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA2-3.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA1-6.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA1-3.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA1-2.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-NAG-core-NAG-SER.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-FUC-core-ALPHA1-6.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-FUC-core-ALPHA1-3.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-FUC-core-ALPHA1-2.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/XYP-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/SIA-pyranose-via-ALPHA2-3.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/NAG-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/Makefile.am -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/MAN-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/GLC-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/GAL-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/FUL-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/FUC-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/BMA-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/ASN-NAG-via-NAG-ASN.pdb -- Up-to-date: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/Makefile -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/Makefile.in -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-val.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-trp.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-thr.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-ser.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-pro.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-phetyr.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-met.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-lys.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-leu.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-ile.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-his.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-glu.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-gln.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-cys.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-asp.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-asn.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-arg.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rama500-pro.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rama500-prepro.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rama500-gly-sym.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rama500-general.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/Makefile.am -- Up-to-date: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/Makefile -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/Makefile.in -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/metal-S-distance.table -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/metal-O-distance.table -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/metal-N-distance.table -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/Makefile.am -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/chapi.cpython-313-aarch64-linux-gnu.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/chapi.cpython-313-aarch64-linux-gnu.so" to "" -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/libcootapi.so.1.1 -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/libcootapi.so make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' dh_auto_install --sourcedirectory data cd data && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' Making install in rama-coeffs make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/rama/zo-tables' install --strip-program=true -m 644 all-non-pre-pro.tab coeffsolution.dat '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/rama/zo-tables' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' Making install in cho-models make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-models' install --strip-program=true -m 644 model-level-1-NAG-NAG-ASN-ASN.tab model-level-4-BMA-BETA1-6-BMA.tab model-level-5-MAN-ALPHA1-3-BMA.tab model-level-2-FUC-BETA1-3-NAG.tab model-level-4-BMA-BETA1-6-MAN.tab model-level-5-MAN-ALPHA1-3-MAN.tab model-level-2-FUC-BETA1-6-NAG.tab model-level-4-MAN-ALPHA1-3-BMA.tab model-level-5-MAN-ALPHA1-6-BMA.tab model-level-2-FUL-ALPHA1-3-NAG.tab model-level-4-MAN-ALPHA1-4-BMA.tab model-level-5-MAN-ALPHA1-6-MAN.tab model-level-2-FUL-ALPHA1-6-NAG.tab model-level-4-MAN-ALPHA1-6-BMA.tab model-level-5-NAG-BETA1-2-MAN.tab model-level-2-NAG-BETA1-4-NAG.tab model-level-4-MAN-ALPHA1-6-MAN.tab model-level-6-GAL-BETA1-4-NAG.tab model-level-3-BMA-BETA1-3-NAG.tab model-level-4-NAG-BETA1-4-BMA.tab model-level-6-MAN-ALPHA1-2-MAN.tab model-level-3-BMA-BETA1-4-NAG.tab model-level-5-BMA-BETA1-2-BMA.tab model-level-7-GLC-ALPHA1-3-MAN.tab model-level-3-MAN-ALPHA1-4-NAG.tab model-level-5-BMA-BETA1-6-MAN.tab model-level-4-BMA-BETA1-3-BMA.tab model-level-5-MAN-ALPHA1-2-MAN.tab '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-models' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' Making install in cho-acedrg make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-acedrg' install --strip-program=true -m 644 BMA-acedrg.cif FUC-acedrg.cif MAN-acedrg.cif NAG-acedrg.cif SIA-acedrg.cif XYP-acedrg.cif '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-acedrg' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' Making install in metal make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal' install --strip-program=true -m 644 metal-O-distance.table metal-S-distance.table metal-N-distance.table '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' install --strip-program=true -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz ligands.db syminfo.lib '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' dh_auto_install --sourcedirectory rama-data cd rama-data && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data' install --strip-program=true -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data' install: WARNING: ignoring --strip-program option as -s option was not specified make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' dh_auto_install --sourcedirectory python cd python && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install --strip-program=true -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py coot_fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py coot_ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_generator_3d_import.py gui_hole.py gui_prosmart.py get_recent_pdbe.py jligand.py jligand_gui.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 coot_redefine_functions.py user_define_restraints.py template_key_bindings.py gui_add_linked_cho.py coot_ligand_check.py run_mogul.py coot_contact_score_isolated_ligand.py gui_contact_score_isolated_ligand.py dictionary_generators.py cho_restraints_from_models.py interactive_nudge_residues.py pdbe_validation_data.py pathology_plots.py ligand_validation_sliders.py enhanced_ligand.py gui_ligand_sliders.py coot_sharpen_blur.py coot_acedrg_link.py coot_toolbuttons.py rcrane_loader.py add_linked_cho.py coot_find_baddies.py coot_chemical_feature_clusters.py coot_res_spec_utils.py coot_output_to_window.py populate_python_menus.py coot_hole.py refine.py what_check.py coot_testing_utils.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install: WARNING: ignoring --strip-program option as -s option was not specified Byte-compiling python modules... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py Byte-compiling python modules (optimized versions) ... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' dh_auto_install --sourcedirectory pyrogen cd pyrogen && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' /bin/bash ../libtool --mode=install install --strip-program=true libcoot_py_restraints.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' install --strip-program=true pyrogen '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 pyrogen.py atom_types.py jay_util.py tautomer.py pyrogen_swig.py coot_git.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install: WARNING: ignoring --strip-program option as -s option was not specified Byte-compiling python modules... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py libtool: warning: relinking 'libcoot_py_restraints.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) Byte-compiling python modules (optimized versions) ... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 libtool: install: install --strip-program=true .libs/libcoot_py_restraints.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.so.0.0.0 install: WARNING: ignoring --strip-program option as -s option was not specified libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0 || { rm -f libcoot_py_restraints.so.0 && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so || { rm -f libcoot_py_restraints.so && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so; }; }) libtool: install: install --strip-program=true .libs/libcoot_py_restraints.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.la install: WARNING: ignoring --strip-program option as -s option was not specified libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /bin/bash ../libtool --mode=install install --strip-program=true _pyrogen_swig.la pyrogen_boost.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_pyrogen_swig.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/pyrogen-swig.o .libs/restraints.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-ideal -lcoot-coord-utils -lcoot-lidia-core -lcoot-analysis -lcoot-geometry -lcoot-utils -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,_pyrogen_swig.so.0 -o .libs/_pyrogen_swig.so.0.0.0 libtool: install: install --strip-program=true .libs/_pyrogen_swig.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 install: WARNING: ignoring --strip-program option as -s option was not specified libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0 || { rm -f _pyrogen_swig.so.0 && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so || { rm -f _pyrogen_swig.so && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so; }; }) libtool: install: install --strip-program=true .libs/_pyrogen_swig.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.la install: WARNING: ignoring --strip-program option as -s option was not specified libtool: warning: relinking 'pyrogen_boost.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/restraints-boost.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-pli -lcoot-ideal -lcoot-coord-utils -lcoot-geometry -lcoot-coords -lcoot-lidia-core -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,pyrogen_boost.so.0 -o .libs/pyrogen_boost.so.0.0.0 libtool: install: install --strip-program=true .libs/pyrogen_boost.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 install: WARNING: ignoring --strip-program option as -s option was not specified libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so.0 || { rm -f pyrogen_boost.so.0 && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so || { rm -f pyrogen_boost.so && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so; }; }) libtool: install: install --strip-program=true .libs/pyrogen_boost.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.la install: WARNING: ignoring --strip-program option as -s option was not specified libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' make install-exec-hook make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[4]: Nothing to be done for 'install-exec-hook'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' # Drop the remaining *.la files find debian/tmp -name '*.la' | xargs --no-run-if-empty rm # Adjust the LD_LIBRARY_PATH setting sed -i 's/${exec_prefix}\/libexec\/Coot/LD_LIBRARY_PATH=${prefix}\/lib\/'aarch64-linux-gnu'\/coot ${exec_prefix}\/libexec\/Coot/' \ debian/tmp/usr/bin/coot sed -i 's/LD_LIBRARY_PATH=$COOT_PREFIX\/lib/LD_LIBRARY_PATH=$COOT_PREFIX\/lib\/'aarch64-linux-gnu'\/coot/g' \ debian/tmp/usr/bin/* sed -i 's/LD_LIBRARY_PATH=$prfx\/lib/LD_LIBRARY_PATH=\/usr\/lib\/'aarch64-linux-gnu'\/coot/g' \ debian/tmp/usr/bin/pyrogen # decode image and convert to smaller sizes # TODO: let us reuse pixmaps/coot-icon.png uudecode < debian/coot-button-64x64.png.uu for g in 22x22 24x24 32x32 48x48; do \ convert -geometry $g coot-button-64x64.png coot-button-$g.png;\ done # install the newly generated png's in the hicolor theme for g in 22x22 24x24 32x32 48x48 64x64; do \ install -D coot-button-$g.png debian/tmp/usr/share/icons/hicolor/$g/apps/coot.png;\ done make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_install -i --exclude=scheme make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_install -Ncoot-data -Ncoot-doc debian/rules execute_after_dh_install-arch make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' rm debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootapi.so* make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_installdocs RELEASE-NOTES # debian/citation.bib -- not available (?) make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_installchangelogs dh_installman dh_python3 I: dh_python3 fs:404: removing symlink: debian/coot/usr/lib/python3/dist-packages/_coot.so I: dh_python3 fs:406: renaming debian/coot/usr/lib/python3/dist-packages/_coot.so.0.0.0 to _coot.so I: dh_python3 fs:421: renaming _coot.so to _coot.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:300: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/_coot.so.0 I: dh_python3 fs:404: removing symlink: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.so I: dh_python3 fs:406: renaming debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.so.0.0.0 to _coot_headless_api.so I: dh_python3 fs:421: renaming _coot_headless_api.so to _coot_headless_api.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:300: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.so.0 I: dh_python3 fs:404: removing symlink: debian/coot/usr/lib/python3/dist-packages/_pyrogen_swig.so I: dh_python3 fs:406: renaming debian/coot/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 to _pyrogen_swig.so I: dh_python3 fs:421: renaming _pyrogen_swig.so to _pyrogen_swig.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:300: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/_pyrogen_swig.so.0 I: dh_python3 fs:404: removing symlink: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.so I: dh_python3 fs:406: renaming debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 to pyrogen_boost.so I: dh_python3 fs:421: renaming pyrogen_boost.so to pyrogen_boost.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:300: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.so.0 dh_icons dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_shlibdeps -l/usr/lib/aarch64-linux-gnu/coot dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: symbol _ZN4coot4util16density_at_pointERKN7clipper4XmapIfEERKNS1_10Coord_orthE used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util13calc_atom_mapEPN4mmdb7ManagerEiRKN7clipper4CellERKNS4_10SpacegroupERKNS4_13Grid_samplingE used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util7extentsEPN4mmdb7ManagerEi used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util16sharpen_blur_mapEPN7clipper4XmapIfEEf used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflate used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol cairo_destroy used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-api.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol cairo_get_reference_count used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-api.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.cpython-313-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_GivenExceptionMatches: it's probably a plugin dpkg-shlibdeps: warning: 93 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _ZN4coot4util13int_to_stringB5cxx11Ei used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-pli.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.cpython-313-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 was not linked against libblas.so.3 (it uses none of the library's symbols) make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libcootapi-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'coot-data' in '../coot-data_1.1.09+dfsg-4_all.deb'. dpkg-deb: building package 'libcootapi-dev' in '../libcootapi-dev_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'coot-dbgsym' in '../coot-dbgsym_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'coot' in '../coot_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'libcootapi1.1-dbgsym' in '../libcootapi1.1-dbgsym_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'libcootapi1.1' in '../libcootapi1.1_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'coot-doc' in '../coot-doc_1.1.09+dfsg-4_all.deb'. dpkg-genbuildinfo --build=binary -O../coot_1.1.09+dfsg-4_arm64.buildinfo dpkg-genchanges --build=binary -O../coot_1.1.09+dfsg-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2425547 and its subdirectories I: Current time: Wed Jan 22 07:06:26 -12 2025 I: pbuilder-time-stamp: 1737572787 Wed Jan 22 19:09:07 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Wed Jan 22 19:09:07 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Wed Jan 22 19:09:07 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Wed Jan 22 19:09:07 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-tFxh8d' ==================================================================================== Wed Feb 25 01:32:09 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 coot unstable /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd 1.1.09+dfsg-4" as arguments. Wed Feb 25 01:32:09 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-RtVryUGV" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Feb 25 01:32:09 UTC 2026 I: Downloading source for unstable/coot=1.1.09+dfsg-4 Reading package lists... NOTICE: 'coot' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/coot.git Please use: git clone https://salsa.debian.org/science-team/coot.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 88.6 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main coot 1.1.09+dfsg-4 (dsc) [2962 B] Get:2 http://deb.debian.org/debian unstable/main coot 1.1.09+dfsg-4 (tar) [88.5 MB] Get:3 http://deb.debian.org/debian unstable/main coot 1.1.09+dfsg-4 (diff) [53.4 kB] Fetched 88.6 MB in 0s (229 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'coot' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/coot.git Please use: git clone https://salsa.debian.org/science-team/coot.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 88.6 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main coot 1.1.09+dfsg-4 (dsc) [2962 B] Get:2 http://deb.debian.org/debian unstable/main coot 1.1.09+dfsg-4 (tar) [88.5 MB] Get:3 http://deb.debian.org/debian unstable/main coot 1.1.09+dfsg-4 (diff) [53.4 kB] Fetched 88.6 MB in 0s (229 MB/s) Download complete and in download only mode ============================================================================= Re-Building coot in unstable on arm64 on codethink03-arm64 now. Date: Wed Feb 25 01:32:09 GMT 2026 Date UTC: Wed Feb 25 01:32:09 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/pbuilderrc_ccyG + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' coot = debian-installer -o coot = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' coot = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/pbuilderrc_ccyG --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b2 --logfile b2/build.log coot_1.1.09+dfsg-4.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Feb 25 15:32:10 +14 2026 I: pbuilder-time-stamp: 1771983130 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [coot_1.1.09+dfsg-4.dsc] I: copying [./coot_1.1.09+dfsg.orig.tar.xz] I: copying [./coot_1.1.09+dfsg-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./coot_1.1.09+dfsg-4.dsc: unsupported subcommand dpkg-source: info: extracting coot in coot-1.1.09+dfsg dpkg-source: info: unpacking coot_1.1.09+dfsg.orig.tar.xz dpkg-source: info: unpacking coot_1.1.09+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying drop-nonexistent-RDKit-libraries.patch dpkg-source: info: applying system-fonts.patch dpkg-source: info: applying no-RPATH.patch dpkg-source: info: applying 26c08247673834ba561feeb9260c4f1f339ef4b5.patch dpkg-source: info: applying SyntaxWarning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/307709/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 25 01:32 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/307709/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/307709/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=70a8e56d45f543eeb5c7d4a46fc0a5fe LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=307709 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/pbuilderrc_ccyG --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b2 --logfile b2/build.log coot_1.1.09+dfsg-4.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/307709/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: bc, cmake, debhelper-compat (= 13), dh-sequence-python3, gemmi, gemmi-dev, ghostscript, imagemagick | graphicsmagick-imagemagick-compat, libasound2-dev, libblas-dev, libboost-dev, libboost-iostreams-dev, libboost-python-dev, libboost-system-dev, libboost-thread-dev, libcairo-dev, libccp4-data, libclipper-dev, libcurl4-gnutls-dev | libcurl-dev, libdw-dev, libeigen3-dev, libelf-dev, libgl-dev, libglib2.0-dev, libglm-dev, libgsl-dev, libgtkmm-4.0-dev, libmmdb2-dev, libpng-dev, libpython3-dev, librdkit-dev, libsqlite3-dev, libssm-dev, libvorbis-dev, nanobind-dev, python-gi-dev, python3-rdkit, python3-requests, python3-setuptools, sharutils, swig, tao-pegtl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on gemmi; however: Package gemmi is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev; however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on imagemagick | graphicsmagick-imagemagick-compat; however: Package imagemagick is not installed. Package graphicsmagick-imagemagick-compat is not installed. pbuilder-satisfydepends-dummy depends on libasound2-dev; however: Package libasound2-dev is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libcairo-dev; however: Package libcairo-dev is not installed. pbuilder-satisfydepends-dummy depends on libccp4-data; however: Package libccp4-data is not installed. pbuilder-satisfydepends-dummy depends on libclipper-dev; however: Package libclipper-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl-dev is not installed. pbuilder-satisfydepends-dummy depends on libdw-dev; however: Package libdw-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libelf-dev; however: Package libelf-dev is not installed. pbuilder-satisfydepends-dummy depends on libgl-dev; however: Package libgl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libglm-dev; however: Package libglm-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtkmm-4.0-dev; however: Package libgtkmm-4.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libpython3-dev; however: Package libpython3-dev is not installed. pbuilder-satisfydepends-dummy depends on librdkit-dev; however: Package librdkit-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libssm-dev; however: Package libssm-dev is not installed. pbuilder-satisfydepends-dummy depends on libvorbis-dev; however: Package libvorbis-dev is not installed. pbuilder-satisfydepends-dummy depends on nanobind-dev; however: Package nanobind-dev is not installed. pbuilder-satisfydepends-dummy depends on python-gi-dev; however: Package python-gi-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-rdkit; however: Package python3-rdkit is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on sharutils; however: Package sharutils is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} ca-certificates{a} cmake{a} cmake-data{a} comerr-dev{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fftw-dev{a} fftw2{a} file{a} fontconfig{a} fontconfig-config{a} fonts-freefont-ttf{a} fonts-urw-base35{a} gemmi{a} gemmi-dev{a} gettext{a} gettext-base{a} ghostscript{a} gir1.2-freedesktop{a} gir1.2-freedesktop-dev{a} gir1.2-gdkpixbuf-2.0{a} gir1.2-girepository-2.0{a} gir1.2-glib-2.0{a} gir1.2-glib-2.0-dev{a} gir1.2-graphene-1.0{a} gir1.2-gtk-4.0{a} gir1.2-harfbuzz-0.0{a} gir1.2-pango-1.0{a} girepository-tools{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} ibverbs-providers{a} icu-devtools{a} imagemagick{a} imagemagick-7-common{a} imagemagick-7.q16{a} intltool-debian{a} krb5-multidev{a} libamd-comgr2{a} libamdhip64-5{a} libapparmor1{a} libarchive-zip-perl{a} libarchive13t64{a} libasound2-data{a} libasound2-dev{a} libasound2t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas-dev{a} libblas3{a} libblkid-dev{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-numpy1.83.0{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcairomm-1.16-1{a} libcairomm-1.16-dev{a} libccp4-data{a} libccp4-dev{a} libccp4c0t64{a} libccp4f0t64{a} libclipper-dev{a} libclipper2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcoordgen3{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdatrie-dev{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libdw-dev{a} libdw1t64{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libegl1-mesa-dev{a} libeigen3-dev{a} libelf-dev{a} libelf1t64{a} libepoxy-dev{a} libepoxy0{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi-dev{a} libffi8{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfontconfig-dev{a} libfontconfig1{a} libfontenc1{a} libfreetype-dev{a} libfreetype6{a} libfribidi-dev{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf-2.0-dev{a} libgdk-pixbuf2.0-bin{a} libgdk-pixbuf2.0-common{a} libgfortran5{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-1.0-1{a} libgirepository-2.0-0{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libglibmm-2.68-1t64{a} libglibmm-2.68-dev{a} libglm-dev{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgraphene-1.0-0{a} libgraphene-1.0-dev{a} libgraphite2-3{a} libgraphite2-dev{a} libgs-common{a} libgs10{a} libgs10-common{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgtk-4-1{a} libgtk-4-common{a} libgtk-4-dev{a} libgtkmm-4.0-0{a} libgtkmm-4.0-dev{a} libharfbuzz-cairo0{a} libharfbuzz-dev{a} libharfbuzz-gobject0{a} libharfbuzz-icu0{a} libharfbuzz-subset0{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-plugins{a} libhwloc15{a} libibmad5{a} libibumad3{a} libibverbs1{a} libice-dev{a} libice6{a} libicu-dev{a} libicu72{a} libidn12{a} libidn2-0{a} libidn2-dev{a} libijs-0.35{a} libinchi1.07{a} libjbig-dev{a} libjbig0{a} libjbig2dec0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-dev{a} libldap2{a} liblerc-dev{a} liblerc4{a} libllvm17t64{a} libllvm19{a} liblqr-1-0{a} libltdl7{a} liblzma-dev{a} liblzo2-2{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libmagickcore-7.q16-10{a} libmagickwand-7.q16-10{a} libmmdb2-0{a} libmmdb2-dev{a} libmount-dev{a} libmunge2{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libogg-dev{a} libogg0{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libopenmpi40{a} libp11-kit-dev{a} libp11-kit0{a} libpam-systemd{a} libpango-1.0-0{a} libpango1.0-dev{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpangomm-2.48-1t64{a} libpangomm-2.48-dev{a} libpangoxft-1.0-0{a} libpaper2{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpkgconf3{a} libpmix2t64{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraw23t64{a} librdkit-dev{a} librdkit1t64{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libselinux1-dev{a} libsensors-config{a} libsensors5{a} libsepol-dev{a} libsharpyuv-dev{a} libsharpyuv0{a} libsigc++-3.0-0{a} libsigc++-3.0-dev{a} libsm-dev{a} libsm6{a} libsqlite3-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssm-dev{a} libssm2{a} libsysprof-capture-4-dev{a} libsystemd-shared{a} libtasn1-6{a} libtasn1-6-dev{a} libthai-data{a} libthai-dev{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtool{a} libuchardet0{a} libucx0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libvorbis-dev{a} libvorbis0a{a} libvorbisenc2{a} libvorbisfile3{a} libvulkan-dev{a} libvulkan1{a} libwayland-bin{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-dev{a} libwayland-egl1{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxcomposite-dev{a} libxcomposite1{a} libxcursor-dev{a} libxcursor1{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxft-dev{a} libxft2{a} libxi-dev{a} libxi6{a} libxinerama-dev{a} libxinerama1{a} libxkbcommon-dev{a} libxkbcommon0{a} libxml2{a} libxnvctrl0{a} libxrandr-dev{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} libxshmfence1{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} nanobind-dev{a} native-architecture{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} openssl{a} pango1.0-tools{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} poppler-data{a} procps{a} python-gi-dev{a} python3{a} python3-autocommand{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-dev{a} python3-gi{a} python3-idna{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-rdkit{a} python3-requests{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} rdkit-data{a} readline-common{a} robin-map-dev{a} sensible-utils{a} sfftw-dev{a} sfftw2{a} shared-mime-info{a} sharutils{a} swig{a} systemd{a} systemd-sysv{a} tao-pegtl-dev{a} tzdata{a} uuid-dev{a} wayland-protocols{a} x11-common{a} x11proto-core-dev{a} x11proto-dev{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf bzip2-doc chrony curl fonts-droid-fallback iso-codes javascript-common krb5-locales libarchive-cpio-perl libgtk-4-bin libgtk-4-media-gstreamer libheif-plugin-aomenc libheif-plugin-x265 libkmod2 libldap-common libltdl-dev libmagickcore-7.q16-10-extra libmail-sendmail-perl libnss-systemd libpaper-utils libpng-tools librsvg2-common libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mesa-vulkan-drivers netpbm ntpsec openntpd psmisc publicsuffix systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 503 newly installed, 0 to remove and 0 not upgraded. Need to get 298 MB of archives. After unpacking 1526 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libsystemd-shared arm64 257.2-2 [1907 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libapparmor1 arm64 3.1.7-1+b3 [41.8 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 systemd arm64 257.2-2 [2922 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 systemd-sysv arm64 257.2-2 [60.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libdbus-1-3 arm64 1.16.0-1 [168 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 dbus-bin arm64 1.16.0-1 [77.7 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 dbus-session-bus-common all 1.16.0-1 [51.1 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 dbus-daemon arm64 1.16.0-1 [150 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 dbus-system-bus-common all 1.16.0-1 [52.2 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 dbus arm64 1.16.0-1 [69.4 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libfftw3-double3 arm64 3.3.10-2+b1 [337 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.45-1 [273 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 fonts-freefont-ttf all 20211204+svn4273-2 [5318 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.2 [216 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 22 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libdav1d7 arm64 1.5.0-1+b1 [248 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libheif-plugin-dav1d arm64 1.19.5-1+b1 [11.5 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libde265-0 arm64 1.0.15-1+b2 [153 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libheif-plugin-libde265 arm64 1.19.5-1+b1 [15.4 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libheif1 arm64 1.19.5-1+b1 [438 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 liblqr-1-0 arm64 0.4.2-2.1+b2 [27.0 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.5.4-2 [415 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libraw23t64 arm64 0.21.3-1+b1 [370 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 imagemagick-7-common all 8:7.1.1.43+dfsg1-1 [67.4 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libmagickcore-7.q16-10 arm64 8:7.1.1.43+dfsg1-1 [1647 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libmagickwand-7.q16-10 arm64 8:7.1.1.43+dfsg1-1 [268 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 poppler-data all 0.4.12-1 [1601 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.1-3 [852 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.1-3 [1990 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-1 [259 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.1-3 [1912 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.1-3 [740 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 68 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.0-2 [1385 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20241223 [164 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libpam-systemd arm64 257.2-2 [272 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [311 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b1 [755 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.12+dfsg-1+b1 [131 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 gtk-update-icon-cache arm64 4.16.12+ds-1 [50.2 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 hicolor-icon-theme all 0.18-1 [12.0 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 adwaita-icon-theme all 47.0-2 [463 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 bc arm64 1.07.1-4+b1 [101 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.4-2 [2267 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 102 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.1-1+b1 [324 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.4-2 [9898 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-1 [55.9 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 dbus-user-session arm64 1.16.0-1 [51.0 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libdconf1 arm64 0.40.0-5 [40.4 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 dconf-service arm64 0.40.0-5 [30.9 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 dconf-gsettings-backend arm64 0.40.0-5 [27.3 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 132 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250108 [113 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10+b1 [126 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10+b1 [54.4 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 libnl-3-200 arm64 3.7.0-0.3+b1 [57.0 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 libnl-route-3-200 arm64 3.7.0-0.3+b1 [167 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 libibverbs1 arm64 55.0-1 [58.6 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 ibverbs-providers arm64 55.0-1 [328 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 librdmacm1t64 arm64 55.0-1 [67.0 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 libfabric1 arm64 1.17.0-3.1 [480 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 libhwloc15 arm64 2.11.2-1 [141 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 libmunge2 arm64 0.5.15-4+b1 [19.4 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 libpciaccess0 arm64 0.17-3+b3 [51.2 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 libxnvctrl0 arm64 535.171.04-1+b1 [14.1 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 ocl-icd-libopencl1 arm64 2.3.2-1+b2 [39.3 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 libhwloc-plugins arm64 2.11.2-1 [17.9 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 libpmix2t64 arm64 5.0.6-1 [577 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 libllvm17t64 arm64 1:17.0.6-20+b1 [21.3 MB] Get: 168 http://deb.debian.org/debian unstable/main arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3+b2 [12.1 MB] Get: 169 http://deb.debian.org/debian unstable/main arm64 libdrm-common all 2.4.123-1 [8084 B] Get: 170 http://deb.debian.org/debian unstable/main arm64 libdrm2 arm64 2.4.123-1 [38.0 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [21.6 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 libnuma1 arm64 2.0.18-1+b1 [21.8 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 libhsakmt1 arm64 6.1.2+ds-1 [56.9 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 libhsa-runtime64-1 arm64 6.1.2-2 [300 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 libamdhip64-5 arm64 5.7.1-5 [8823 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 libibumad3 arm64 55.0-1 [27.2 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 libibmad5 arm64 55.0-1 [41.3 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 libucx0 arm64 1.17.0+ds-3 [959 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 libopenmpi40 arm64 5.0.6-3 [2087 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 fftw2 arm64 2.1.5-7+b1 [203 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 fftw-dev arm64 2.1.5-7+b1 [242 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.15.0-2 [462 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 gemmi arm64 0.6.5+ds-2+b2 [1123 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Get: 185 http://deb.debian.org/debian unstable/main arm64 gemmi-dev arm64 0.6.5+ds-2+b2 [1087 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 libgs-common all 10.04.0~dfsg-2 [148 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 libgs10-common all 10.04.0~dfsg-2 [475 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 libavahi-common-data arm64 0.8-16 [112 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 libavahi-common3 arm64 0.8-16 [43.3 kB] Get: 190 http://deb.debian.org/debian unstable/main arm64 libavahi-client3 arm64 0.8-16 [46.7 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 libcups2t64 arm64 2.4.10-2+b1 [236 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 libidn12 arm64 1.42-2+b1 [80.2 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 libijs-0.35 arm64 0.35-15.1+b2 [14.9 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 libjbig2dec0 arm64 0.20-1+b3 [60.1 kB] Get: 195 http://deb.debian.org/debian unstable/main arm64 libpaper2 arm64 2.2.5-0.3 [16.3 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 libgs10 arm64 10.04.0~dfsg-2+b1 [2351 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 ghostscript arm64 10.04.0~dfsg-2+b1 [51.0 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 gir1.2-glib-2.0 arm64 2.82.4-2 [194 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b3 [27.2 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 libcairo-gobject2 arm64 1.18.2-2 [130 kB] Get: 208 http://deb.debian.org/debian unstable/main arm64 gir1.2-freedesktop arm64 1.82.0-4 [60.2 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 gir1.2-glib-2.0-dev arm64 2.82.4-2 [903 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 gir1.2-freedesktop-dev arm64 1.82.0-4 [51.3 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 gir1.2-gdkpixbuf-2.0 arm64 2.42.12+dfsg-1+b1 [14.3 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 libgirepository-1.0-1 arm64 1.82.0-4 [108 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 gir1.2-girepository-2.0 arm64 1.82.0-4 [39.4 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 libgraphene-1.0-0 arm64 1.10.8-5 [42.1 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 gir1.2-graphene-1.0 arm64 1.10.8-5 [12.8 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-gobject0 arm64 10.2.0-1 [31.9 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 gir1.2-harfbuzz-0.0 arm64 10.2.0-1 [42.0 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 222 http://deb.debian.org/debian unstable/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 libpango-1.0-0 arm64 1.56.1-1 [213 kB] Get: 225 http://deb.debian.org/debian unstable/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [52.8 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [33.8 kB] Get: 227 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b3 [51.6 kB] Get: 228 http://deb.debian.org/debian unstable/main arm64 libpangoxft-1.0-0 arm64 1.56.1-1 [27.0 kB] Get: 229 http://deb.debian.org/debian unstable/main arm64 gir1.2-pango-1.0 arm64 1.56.1-1 [39.0 kB] Get: 230 http://deb.debian.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3+b1 [49.6 kB] Get: 231 http://deb.debian.org/debian unstable/main arm64 libcairo-script-interpreter2 arm64 1.18.2-2 [57.4 kB] Get: 232 http://deb.debian.org/debian unstable/main arm64 libcloudproviders0 arm64 0.3.6-1+b1 [27.7 kB] Get: 233 http://deb.debian.org/debian unstable/main arm64 libcolord2 arm64 1.4.7-1+b2 [130 kB] Get: 234 http://deb.debian.org/debian unstable/main arm64 libepoxy0 arm64 1.5.10-2 [200 kB] Get: 235 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-subset0 arm64 10.2.0-1 [511 kB] Get: 236 http://deb.debian.org/debian unstable/main arm64 libvulkan1 arm64 1.4.304.0-1 [126 kB] Get: 237 http://deb.debian.org/debian unstable/main arm64 libwayland-client0 arm64 1.23.0-1+b1 [26.0 kB] Get: 238 http://deb.debian.org/debian unstable/main arm64 libwayland-egl1 arm64 1.23.0-1+b1 [5768 B] Get: 239 http://deb.debian.org/debian unstable/main arm64 libxfixes3 arm64 1:6.0.0-2+b3 [20.4 kB] Get: 240 http://deb.debian.org/debian unstable/main arm64 libxcursor1 arm64 1:1.2.3-1 [39.3 kB] Get: 241 http://deb.debian.org/debian unstable/main arm64 libxdamage1 arm64 1:1.1.6-1+b2 [15.6 kB] Get: 242 http://deb.debian.org/debian unstable/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB] Get: 243 http://deb.debian.org/debian unstable/main arm64 libxinerama1 arm64 2:1.1.4-3+b3 [16.1 kB] Get: 244 http://deb.debian.org/debian unstable/main arm64 xkb-data all 2.42-1 [790 kB] Get: 245 http://deb.debian.org/debian unstable/main arm64 libxkbcommon0 arm64 1.7.0-2 [106 kB] Get: 246 http://deb.debian.org/debian unstable/main arm64 libxrandr2 arm64 2:1.5.4-1+b2 [36.0 kB] Get: 247 http://deb.debian.org/debian unstable/main arm64 libglvnd0 arm64 1.7.0-1+b2 [41.6 kB] Get: 248 http://deb.debian.org/debian unstable/main arm64 libgles2 arm64 1.7.0-1+b2 [18.0 kB] Get: 249 http://deb.debian.org/debian unstable/main arm64 libgtk-4-common all 4.16.12+ds-1 [2759 kB] Get: 250 http://deb.debian.org/debian unstable/main arm64 libgtk-4-1 arm64 4.16.12+ds-1 [2938 kB] Get: 251 http://deb.debian.org/debian unstable/main arm64 gir1.2-gtk-4.0 arm64 4.16.12+ds-1 [210 kB] Get: 252 http://deb.debian.org/debian unstable/main arm64 native-architecture all 0.2.3 [2108 B] Get: 253 http://deb.debian.org/debian unstable/main arm64 libgirepository-2.0-0 arm64 2.82.4-2 [130 kB] Get: 254 http://deb.debian.org/debian unstable/main arm64 girepository-tools arm64 2.82.4-2 [135 kB] Get: 255 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 72.1-6 [196 kB] Get: 256 http://deb.debian.org/debian unstable/main arm64 imagemagick-7.q16 arm64 8:7.1.1.43+dfsg1-1 [726 kB] Get: 257 http://deb.debian.org/debian unstable/main arm64 imagemagick arm64 8:7.1.1.43+dfsg1-1 [20.0 kB] Get: 258 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-4 [56.9 kB] Get: 259 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4 [41.0 kB] Get: 260 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-4 [41.0 kB] Get: 261 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-4 [53.1 kB] Get: 262 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-4 [126 kB] Get: 263 http://deb.debian.org/debian unstable/main arm64 libasound2-data all 1.2.13-1 [21.1 kB] Get: 264 http://deb.debian.org/debian unstable/main arm64 libasound2t64 arm64 1.2.13-1+b1 [338 kB] Get: 265 http://deb.debian.org/debian unstable/main arm64 libasound2-dev arm64 1.2.13-1+b1 [120 kB] Get: 266 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 267 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.0-4 [106 kB] Get: 268 http://deb.debian.org/debian unstable/main arm64 uuid-dev arm64 2.40.4-1 [48.2 kB] Get: 269 http://deb.debian.org/debian unstable/main arm64 libblkid-dev arm64 2.40.4-1 [210 kB] Get: 270 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-4 [10.6 MB] Get: 271 http://deb.debian.org/debian unstable/main arm64 libboost-atomic1.83.0 arm64 1.83.0-4 [233 kB] Get: 272 http://deb.debian.org/debian unstable/main arm64 libboost-atomic1.83-dev arm64 1.83.0-4 [234 kB] Get: 273 http://deb.debian.org/debian unstable/main arm64 libboost-chrono1.83.0t64 arm64 1.83.0-4 [239 kB] Get: 274 http://deb.debian.org/debian unstable/main arm64 libboost-chrono1.83-dev arm64 1.83.0-4 [245 kB] Get: 275 http://deb.debian.org/debian unstable/main arm64 libboost-date-time1.83.0 arm64 1.83.0-4 [231 kB] Get: 276 http://deb.debian.org/debian unstable/main arm64 libboost-serialization1.83.0 arm64 1.83.0-4 [325 kB] Get: 277 http://deb.debian.org/debian unstable/main arm64 libboost-serialization1.83-dev arm64 1.83.0-4 [375 kB] Get: 278 http://deb.debian.org/debian unstable/main arm64 libboost-date-time1.83-dev arm64 1.83.0-4 [239 kB] Get: 279 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 280 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83.0 arm64 1.83.0-4 [314 kB] Get: 281 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 72.1-6 [10.3 MB] Get: 282 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83-dev arm64 1.83.0-4 [338 kB] Get: 283 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-4 [261 kB] Get: 284 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 285 http://deb.debian.org/debian unstable/main arm64 libboost-python1.83.0 arm64 1.83.0-4 [309 kB] Get: 286 http://deb.debian.org/debian unstable/main arm64 libboost-numpy1.83.0 arm64 1.83.0-4 [241 kB] Get: 287 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.1-3 [1971 kB] Get: 288 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 289 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 290 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.1-3 [4710 kB] Get: 291 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.13.1-2 [10.2 kB] Get: 292 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.1-3 [504 kB] Get: 293 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 294 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 295 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 296 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.13.1-2 [26.1 kB] Get: 297 http://deb.debian.org/debian unstable/main arm64 libboost-python1.83-dev arm64 1.83.0-4 [323 kB] Get: 298 http://deb.debian.org/debian unstable/main arm64 libboost-python-dev arm64 1.83.0.2+b2 [3880 B] Get: 299 http://deb.debian.org/debian unstable/main arm64 libboost-system1.83.0 arm64 1.83.0-4 [231 kB] Get: 300 http://deb.debian.org/debian unstable/main arm64 libboost-system1.83-dev arm64 1.83.0-4 [231 kB] Get: 301 http://deb.debian.org/debian unstable/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B] Get: 302 http://deb.debian.org/debian unstable/main arm64 libboost-thread1.83.0 arm64 1.83.0-4 [265 kB] Get: 303 http://deb.debian.org/debian unstable/main arm64 libboost-thread1.83-dev arm64 1.83.0-4 [277 kB] Get: 304 http://deb.debian.org/debian unstable/main arm64 libboost-thread-dev arm64 1.83.0.2+b2 [3616 B] Get: 305 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 306 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 307 http://deb.debian.org/debian unstable/main arm64 libpng-dev arm64 1.6.45-1 [361 kB] Get: 308 http://deb.debian.org/debian unstable/main arm64 libfreetype-dev arm64 2.13.3+dfsg-1 [600 kB] Get: 309 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 310 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 311 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 312 http://deb.debian.org/debian unstable/main arm64 libfontconfig-dev arm64 2.15.0-2 [412 kB] Get: 313 http://deb.debian.org/debian unstable/main arm64 libffi-dev arm64 3.4.6-1 [57.0 kB] Get: 314 http://deb.debian.org/debian unstable/main arm64 libsepol-dev arm64 3.7-1 [354 kB] Get: 315 http://deb.debian.org/debian unstable/main arm64 libpcre2-16-0 arm64 10.44-5 [230 kB] Get: 316 http://deb.debian.org/debian unstable/main arm64 libpcre2-32-0 arm64 10.44-5 [220 kB] Get: 317 http://deb.debian.org/debian unstable/main arm64 libpcre2-posix3 arm64 10.44-5 [60.5 kB] Get: 318 http://deb.debian.org/debian unstable/main arm64 libpcre2-dev arm64 10.44-5 [704 kB] Get: 319 http://deb.debian.org/debian unstable/main arm64 libselinux1-dev arm64 3.7-3+b1 [164 kB] Get: 320 http://deb.debian.org/debian unstable/main arm64 libmount-dev arm64 2.40.4-1 [29.3 kB] Get: 321 http://deb.debian.org/debian unstable/main arm64 libsysprof-capture-4-dev arm64 47.2-1 [49.1 kB] Get: 322 http://deb.debian.org/debian unstable/main arm64 libgio-2.0-dev arm64 2.82.4-2 [1698 kB] Get: 323 http://deb.debian.org/debian unstable/main arm64 libglib2.0-data all 2.82.4-2 [1276 kB] Get: 324 http://deb.debian.org/debian unstable/main arm64 libglib2.0-bin arm64 2.82.4-2 [123 kB] Get: 325 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 326 http://deb.debian.org/debian unstable/main arm64 libgio-2.0-dev-bin arm64 2.82.4-2 [162 kB] Get: 327 http://deb.debian.org/debian unstable/main arm64 libglib2.0-dev-bin arm64 2.82.4-2 [52.1 kB] Get: 328 http://deb.debian.org/debian unstable/main arm64 libglib2.0-dev arm64 2.82.4-2 [52.9 kB] Get: 329 http://deb.debian.org/debian unstable/main arm64 libpixman-1-dev arm64 0.44.0-3 [11.4 kB] Get: 330 http://deb.debian.org/debian unstable/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 331 http://deb.debian.org/debian unstable/main arm64 x11proto-dev all 2024.1-1 [603 kB] Get: 332 http://deb.debian.org/debian unstable/main arm64 x11proto-core-dev all 2024.1-1 [3312 B] Get: 333 http://deb.debian.org/debian unstable/main arm64 libice-dev arm64 2:1.1.1-1 [73.0 kB] Get: 334 http://deb.debian.org/debian unstable/main arm64 libsm-dev arm64 2:1.2.4-1 [38.0 kB] Get: 335 http://deb.debian.org/debian unstable/main arm64 libxau-dev arm64 1:1.0.11-1 [23.9 kB] Get: 336 http://deb.debian.org/debian unstable/main arm64 libxdmcp-dev arm64 1:1.1.5-1 [44.2 kB] Get: 337 http://deb.debian.org/debian unstable/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 338 http://deb.debian.org/debian unstable/main arm64 libxcb1-dev arm64 1.17.0-2+b1 [182 kB] Get: 339 http://deb.debian.org/debian unstable/main arm64 libx11-dev arm64 2:1.8.10-2 [877 kB] Get: 340 http://deb.debian.org/debian unstable/main arm64 libxcb-render0-dev arm64 1.17.0-2+b1 [119 kB] Get: 341 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0-dev arm64 1.17.0-2+b1 [108 kB] Get: 342 http://deb.debian.org/debian unstable/main arm64 libxext-dev arm64 2:1.3.4-1+b3 [105 kB] Get: 343 http://deb.debian.org/debian unstable/main arm64 libxrender-dev arm64 1:0.9.10-1.1+b3 [35.7 kB] Get: 344 http://deb.debian.org/debian unstable/main arm64 libcairo2-dev arm64 1.18.2-2 [43.0 kB] Get: 345 http://deb.debian.org/debian unstable/main arm64 libsigc++-3.0-0 arm64 3.6.0-2+b1 [29.2 kB] Get: 346 http://deb.debian.org/debian unstable/main arm64 libcairomm-1.16-1 arm64 1.18.0-1+b2 [57.6 kB] Get: 347 http://deb.debian.org/debian unstable/main arm64 libsigc++-3.0-dev arm64 3.6.0-2+b1 [51.5 kB] Get: 348 http://deb.debian.org/debian unstable/main arm64 libcairomm-1.16-dev arm64 1.18.0-1+b2 [64.4 kB] Get: 349 http://deb.debian.org/debian unstable/main arm64 libccp4-data all 8.0.0-4 [62.7 kB] Get: 350 http://deb.debian.org/debian unstable/main arm64 libccp4c0t64 arm64 8.0.0-4 [83.1 kB] Get: 351 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-14 [361 kB] Get: 352 http://deb.debian.org/debian unstable/main arm64 libmmdb2-0 arm64 2.0.22-1+b2 [309 kB] Get: 353 http://deb.debian.org/debian unstable/main arm64 libccp4f0t64 arm64 8.0.0-4 [175 kB] Get: 354 http://deb.debian.org/debian unstable/main arm64 libccp4-dev arm64 8.0.0-4 [42.9 kB] Get: 355 http://deb.debian.org/debian unstable/main arm64 sfftw2 arm64 2.1.5-7+b1 [203 kB] Get: 356 http://deb.debian.org/debian unstable/main arm64 libclipper2 arm64 2.1.20201109-2+b3 [1102 kB] Get: 357 http://deb.debian.org/debian unstable/main arm64 libmmdb2-dev arm64 2.0.22-1+b2 [92.9 kB] Get: 358 http://deb.debian.org/debian unstable/main arm64 sfftw-dev arm64 2.1.5-7+b1 [244 kB] Get: 359 http://deb.debian.org/debian unstable/main arm64 libclipper-dev arm64 2.1.20201109-2+b3 [82.4 kB] Get: 360 http://deb.debian.org/debian unstable/main arm64 libcoordgen3 arm64 3.0.2-1+b2 [204 kB] Get: 361 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 362 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 363 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 364 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.11.1-1+b1 [331 kB] Get: 365 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 366 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB] Get: 367 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 368 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 369 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 370 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 371 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 372 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 373 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 374 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 375 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 376 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-4 [15.9 kB] Get: 377 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.9+dfsg-1 [305 kB] Get: 378 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 379 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.6.0-2 [86.5 kB] Get: 380 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.9.1-1 [23.0 kB] Get: 381 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.9.1-1 [162 kB] Get: 382 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 383 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 384 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.4.0-2 [3234 kB] Get: 385 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 386 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [329 kB] Get: 387 http://deb.debian.org/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.11.1-1+b1 [461 kB] Get: 388 http://deb.debian.org/debian unstable/main arm64 libdatrie-dev arm64 0.2.13-3+b1 [18.5 kB] Get: 389 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-1+b1 [51.4 kB] Get: 390 http://deb.debian.org/debian unstable/main arm64 libdrm-radeon1 arm64 2.4.123-1 [21.3 kB] Get: 391 http://deb.debian.org/debian unstable/main arm64 libelf-dev arm64 0.192-4 [94.9 kB] Get: 392 http://deb.debian.org/debian unstable/main arm64 libdw1t64 arm64 0.192-4 [237 kB] Get: 393 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 394 http://deb.debian.org/debian unstable/main arm64 libdw-dev arm64 0.192-4 [320 kB] Get: 395 http://deb.debian.org/debian unstable/main arm64 libwayland-server0 arm64 1.23.0-1+b1 [33.4 kB] Get: 396 http://deb.debian.org/debian unstable/main arm64 libglapi-mesa arm64 24.3.3-1 [47.9 kB] Get: 397 http://deb.debian.org/debian unstable/main arm64 libllvm19 arm64 1:19.1.7-1 [23.3 MB] Get: 398 http://deb.debian.org/debian unstable/main arm64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 399 http://deb.debian.org/debian unstable/main arm64 libsensors5 arm64 1:3.6.0-10+b1 [34.3 kB] Get: 400 http://deb.debian.org/debian unstable/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [241 kB] Get: 401 http://deb.debian.org/debian unstable/main arm64 libxcb-dri3-0 arm64 1.17.0-2+b1 [107 kB] Get: 402 http://deb.debian.org/debian unstable/main arm64 libxcb-present0 arm64 1.17.0-2+b1 [106 kB] Get: 403 http://deb.debian.org/debian unstable/main arm64 libxcb-randr0 arm64 1.17.0-2+b1 [117 kB] Get: 404 http://deb.debian.org/debian unstable/main arm64 libxcb-sync1 arm64 1.17.0-2+b1 [109 kB] Get: 405 http://deb.debian.org/debian unstable/main arm64 libxcb-xfixes0 arm64 1.17.0-2+b1 [110 kB] Get: 406 http://deb.debian.org/debian unstable/main arm64 libxshmfence1 arm64 1.3-1+b3 [9104 B] Get: 407 http://deb.debian.org/debian unstable/main arm64 mesa-libgallium arm64 24.3.3-1 [7904 kB] Get: 408 http://deb.debian.org/debian unstable/main arm64 libgbm1 arm64 24.3.3-1 [42.9 kB] Get: 409 http://deb.debian.org/debian unstable/main arm64 libegl-mesa0 arm64 24.3.3-1 [119 kB] Get: 410 http://deb.debian.org/debian unstable/main arm64 libegl1 arm64 1.7.0-1+b2 [34.0 kB] Get: 411 http://deb.debian.org/debian unstable/main arm64 libxcb-glx0 arm64 1.17.0-2+b1 [123 kB] Get: 412 http://deb.debian.org/debian unstable/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b4 [19.2 kB] Get: 413 http://deb.debian.org/debian unstable/main arm64 libgl1-mesa-dri arm64 24.3.3-1 [44.6 kB] Get: 414 http://deb.debian.org/debian unstable/main arm64 libglx-mesa0 arm64 24.3.3-1 [142 kB] Get: 415 http://deb.debian.org/debian unstable/main arm64 libglx0 arm64 1.7.0-1+b2 [31.1 kB] Get: 416 http://deb.debian.org/debian unstable/main arm64 libgl1 arm64 1.7.0-1+b2 [90.9 kB] Get: 417 http://deb.debian.org/debian unstable/main arm64 libglx-dev arm64 1.7.0-1+b2 [15.8 kB] Get: 418 http://deb.debian.org/debian unstable/main arm64 libgl-dev arm64 1.7.0-1+b2 [101 kB] Get: 419 http://deb.debian.org/debian unstable/main arm64 libegl-dev arm64 1.7.0-1+b2 [19.5 kB] Get: 420 http://deb.debian.org/debian unstable/main arm64 libglvnd-core-dev arm64 1.7.0-1+b2 [13.4 kB] Get: 421 http://deb.debian.org/debian unstable/main arm64 libgles1 arm64 1.7.0-1+b2 [12.6 kB] Get: 422 http://deb.debian.org/debian unstable/main arm64 libgles-dev arm64 1.7.0-1+b2 [50.8 kB] Get: 423 http://deb.debian.org/debian unstable/main arm64 libopengl0 arm64 1.7.0-1+b2 [32.1 kB] Get: 424 http://deb.debian.org/debian unstable/main arm64 libopengl-dev arm64 1.7.0-1+b2 [5376 B] Get: 425 http://deb.debian.org/debian unstable/main arm64 libglvnd-dev arm64 1.7.0-1+b2 [5144 B] Get: 426 http://deb.debian.org/debian unstable/main arm64 libegl1-mesa-dev arm64 24.3.3-1 [22.8 kB] Get: 427 http://deb.debian.org/debian unstable/main arm64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 428 http://deb.debian.org/debian unstable/main arm64 libepoxy-dev arm64 1.5.10-2 [127 kB] Get: 429 http://deb.debian.org/debian unstable/main arm64 libfribidi-dev arm64 1.0.16-1 [65.9 kB] Get: 430 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf2.0-bin arm64 2.42.12+dfsg-1+b1 [19.0 kB] Get: 431 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 432 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 433 http://deb.debian.org/debian unstable/main arm64 libjbig-dev arm64 2.1-6.1+b2 [30.5 kB] Get: 434 http://deb.debian.org/debian unstable/main arm64 libwebpdecoder3 arm64 1.5.0-0.1 [182 kB] Get: 435 http://deb.debian.org/debian unstable/main arm64 libsharpyuv-dev arm64 1.5.0-0.1 [118 kB] Get: 436 http://deb.debian.org/debian unstable/main arm64 libwebp-dev arm64 1.5.0-0.1 [406 kB] Get: 437 http://deb.debian.org/debian unstable/main arm64 libtiffxx6 arm64 4.5.1+git230720-5 [149 kB] Get: 438 http://deb.debian.org/debian unstable/main arm64 liblerc-dev arm64 4.0.0+ds-5 [164 kB] Get: 439 http://deb.debian.org/debian unstable/main arm64 libtiff-dev arm64 4.5.1+git230720-5 [451 kB] Get: 440 http://deb.debian.org/debian unstable/main arm64 libgdk-pixbuf-2.0-dev arm64 2.42.12+dfsg-1+b1 [52.7 kB] Get: 441 http://deb.debian.org/debian unstable/main arm64 libglibmm-2.68-1t64 arm64 2.82.0-1 [604 kB] Get: 442 http://deb.debian.org/debian unstable/main arm64 libglibmm-2.68-dev arm64 2.82.0-1 [465 kB] Get: 443 http://deb.debian.org/debian unstable/main arm64 libglm-dev all 0.9.9.8+ds-8 [183 kB] Get: 444 http://deb.debian.org/debian unstable/main arm64 libgraphene-1.0-dev arm64 1.10.8-5 [61.5 kB] Get: 445 http://deb.debian.org/debian unstable/main arm64 libgraphite2-dev arm64 1.3.14-2+b1 [20.3 kB] Get: 446 http://deb.debian.org/debian unstable/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB] Get: 447 http://deb.debian.org/debian unstable/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB] Get: 448 http://deb.debian.org/debian unstable/main arm64 libgsl-dev arm64 2.8+dfsg-5 [1118 kB] Get: 449 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-icu0 arm64 10.2.0-1 [15.5 kB] Get: 450 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-cairo0 arm64 10.2.0-1 [42.4 kB] Get: 451 http://deb.debian.org/debian unstable/main arm64 libharfbuzz-dev arm64 10.2.0-1 [145 kB] Get: 452 http://deb.debian.org/debian unstable/main arm64 libthai-dev arm64 0.1.29-2+b1 [24.0 kB] Get: 453 http://deb.debian.org/debian unstable/main arm64 libxft-dev arm64 2.3.6-1+b3 [72.0 kB] Get: 454 http://deb.debian.org/debian unstable/main arm64 pango1.0-tools arm64 1.56.1-1 [43.0 kB] Get: 455 http://deb.debian.org/debian unstable/main arm64 libpango1.0-dev arm64 1.56.1-1 [155 kB] Get: 456 http://deb.debian.org/debian unstable/main arm64 libwayland-cursor0 arm64 1.23.0-1+b1 [11.5 kB] Get: 457 http://deb.debian.org/debian unstable/main arm64 libwayland-bin arm64 1.23.0-1+b1 [20.5 kB] Get: 458 http://deb.debian.org/debian unstable/main arm64 libwayland-dev arm64 1.23.0-1+b1 [73.6 kB] Get: 459 http://deb.debian.org/debian unstable/main arm64 libxcomposite1 arm64 1:0.4.6-1 [16.4 kB] Get: 460 http://deb.debian.org/debian unstable/main arm64 libxfixes-dev arm64 1:6.0.0-2+b3 [22.9 kB] Get: 461 http://deb.debian.org/debian unstable/main arm64 libxcomposite-dev arm64 1:0.4.6-1 [20.2 kB] Get: 462 http://deb.debian.org/debian unstable/main arm64 libxcursor-dev arm64 1:1.2.3-1 [51.9 kB] Get: 463 http://deb.debian.org/debian unstable/main arm64 libxdamage-dev arm64 1:1.1.6-1+b2 [15.5 kB] Get: 464 http://deb.debian.org/debian unstable/main arm64 libxi-dev arm64 2:1.8.2-1 [240 kB] Get: 465 http://deb.debian.org/debian unstable/main arm64 libxinerama-dev arm64 2:1.1.4-3+b3 [18.4 kB] Get: 466 http://deb.debian.org/debian unstable/main arm64 libxkbcommon-dev arm64 1.7.0-2 [53.6 kB] Get: 467 http://deb.debian.org/debian unstable/main arm64 libxrandr-dev arm64 2:1.5.4-1+b2 [44.4 kB] Get: 468 http://deb.debian.org/debian unstable/main arm64 libvulkan-dev arm64 1.4.304.0-1 [1452 kB] Get: 469 http://deb.debian.org/debian unstable/main arm64 wayland-protocols all 1.39-1 [107 kB] Get: 470 http://deb.debian.org/debian unstable/main arm64 libgtk-4-dev arm64 4.16.12+ds-1 [986 kB] Get: 471 http://deb.debian.org/debian unstable/main arm64 libpangomm-2.48-1t64 arm64 2.56.1-1 [81.0 kB] Get: 472 http://deb.debian.org/debian unstable/main arm64 libgtkmm-4.0-0 arm64 4.16.0-1 [965 kB] Get: 473 http://deb.debian.org/debian unstable/main arm64 libpangomm-2.48-dev arm64 2.56.1-1 [73.2 kB] Get: 474 http://deb.debian.org/debian unstable/main arm64 libgtkmm-4.0-dev arm64 4.16.0-1 [547 kB] Get: 475 http://deb.debian.org/debian unstable/main arm64 libinchi1.07 arm64 1.07.2+dfsg-1 [500 kB] Get: 476 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 477 http://deb.debian.org/debian unstable/main arm64 libmaeparser1 arm64 1.3.1-1+b2 [84.6 kB] Get: 478 http://deb.debian.org/debian unstable/main arm64 libogg0 arm64 1.3.5-3+b2 [23.6 kB] Get: 479 http://deb.debian.org/debian unstable/main arm64 libogg-dev arm64 1.3.5-3+b2 [200 kB] Get: 480 http://deb.debian.org/debian unstable/main arm64 librdkit1t64 arm64 202409.4-1 [4811 kB] Get: 481 http://deb.debian.org/debian unstable/main arm64 librdkit-dev arm64 202409.4-1 [471 kB] Get: 482 http://deb.debian.org/debian unstable/main arm64 libsqlite3-dev arm64 3.46.1-1 [1058 kB] Get: 483 http://deb.debian.org/debian unstable/main arm64 libssm2 arm64 1.4.0-2+b3 [75.3 kB] Get: 484 http://deb.debian.org/debian unstable/main arm64 libssm-dev arm64 1.4.0-2+b3 [15.2 kB] Get: 485 http://deb.debian.org/debian unstable/main arm64 libvorbis0a arm64 1.3.7-2+b1 [84.5 kB] Get: 486 http://deb.debian.org/debian unstable/main arm64 libvorbisenc2 arm64 1.3.7-2+b1 [76.3 kB] Get: 487 http://deb.debian.org/debian unstable/main arm64 libvorbisfile3 arm64 1.3.7-2+b1 [20.8 kB] Get: 488 http://deb.debian.org/debian unstable/main arm64 libvorbis-dev arm64 1.3.7-2+b1 [320 kB] Get: 489 http://deb.debian.org/debian unstable/main arm64 robin-map-dev all 1.3.0-1 [29.8 kB] Get: 490 http://deb.debian.org/debian unstable/main arm64 nanobind-dev all 2.4.0-1 [161 kB] Get: 491 http://deb.debian.org/debian unstable/main arm64 python3-gi arm64 3.50.0-4 [257 kB] Get: 492 http://deb.debian.org/debian unstable/main arm64 python-gi-dev arm64 3.50.0-4 [13.5 kB] Get: 493 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.12.14+ds-1 [9624 B] Get: 494 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 495 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1+b1 [129 kB] Get: 496 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 497 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-13 [3815 kB] Get: 498 http://deb.debian.org/debian unstable/main arm64 rdkit-data all 202409.4-1 [13.2 MB] Get: 499 http://deb.debian.org/debian unstable/main arm64 python3-rdkit arm64 202409.4-1 [4314 kB] Get: 500 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 501 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 502 http://deb.debian.org/debian unstable/main arm64 sharutils arm64 1:4.15.2-10 [260 kB] Get: 503 http://deb.debian.org/debian unstable/main arm64 swig arm64 4.3.0-0.1 [1406 kB] Fetched 298 MB in 2s (127 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libsystemd-shared_257.2-2_arm64.deb ... Unpacking libsystemd-shared:arm64 (257.2-2) ... Selecting previously unselected package libapparmor1:arm64. Preparing to unpack .../libapparmor1_3.1.7-1+b3_arm64.deb ... Unpacking libapparmor1:arm64 (3.1.7-1+b3) ... Setting up libsystemd-shared:arm64 (257.2-2) ... Selecting previously unselected package systemd. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19978 files and directories currently installed.) Preparing to unpack .../systemd_257.2-2_arm64.deb ... Unpacking systemd (257.2-2) ... Setting up libapparmor1:arm64 (3.1.7-1+b3) ... Setting up systemd (257.2-2) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' -> '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' -> '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' -> '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20921 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_257.2-2_arm64.deb ... Unpacking systemd-sysv (257.2-2) ... Selecting previously unselected package libdbus-1-3:arm64. Preparing to unpack .../01-libdbus-1-3_1.16.0-1_arm64.deb ... Unpacking libdbus-1-3:arm64 (1.16.0-1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../02-dbus-bin_1.16.0-1_arm64.deb ... Unpacking dbus-bin (1.16.0-1) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../03-dbus-session-bus-common_1.16.0-1_all.deb ... Unpacking dbus-session-bus-common (1.16.0-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../04-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../05-dbus-daemon_1.16.0-1_arm64.deb ... Unpacking dbus-daemon (1.16.0-1) ... Selecting previously unselected package dbus-system-bus-common. Preparing to unpack .../06-dbus-system-bus-common_1.16.0-1_all.deb ... Unpacking dbus-system-bus-common (1.16.0-1) ... Selecting previously unselected package dbus. Preparing to unpack .../07-dbus_1.16.0-1_arm64.deb ... Unpacking dbus (1.16.0-1) ... Selecting previously unselected package libfftw3-double3:arm64. Preparing to unpack .../08-libfftw3-double3_3.3.10-2+b1_arm64.deb ... Unpacking libfftw3-double3:arm64 (3.3.10-2+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../09-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../10-libpng16-16t64_1.6.45-1_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.45-1) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../11-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-freefont-ttf. Preparing to unpack .../12-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... Selecting previously unselected package libfontenc1:arm64. Preparing to unpack .../13-libfontenc1_1%3a1.1.8-1+b2_arm64.deb ... Unpacking libfontenc1:arm64 (1:1.1.8-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../14-x11-common_1%3a7.7+23.2_all.deb ... Unpacking x11-common (1:7.7+23.2) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../15-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../16-xfonts-utils_1%3a7.7+7_arm64.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../17-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../18-fontconfig-config_2.15.0-2_arm64.deb ... Unpacking fontconfig-config (2.15.0-2) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../19-libfontconfig1_2.15.0-2_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-2) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../20-libsharpyuv0_1.5.0-0.1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... Selecting previously unselected package libdav1d7:arm64. Preparing to unpack .../21-libdav1d7_1.5.0-1+b1_arm64.deb ... Unpacking libdav1d7:arm64 (1.5.0-1+b1) ... Selecting previously unselected package libheif-plugin-dav1d:arm64. Preparing to unpack .../22-libheif-plugin-dav1d_1.19.5-1+b1_arm64.deb ... Unpacking libheif-plugin-dav1d:arm64 (1.19.5-1+b1) ... Selecting previously unselected package libde265-0:arm64. Preparing to unpack .../23-libde265-0_1.0.15-1+b2_arm64.deb ... Unpacking libde265-0:arm64 (1.0.15-1+b2) ... Selecting previously unselected package libheif-plugin-libde265:arm64. Preparing to unpack .../24-libheif-plugin-libde265_1.19.5-1+b1_arm64.deb ... Unpacking libheif-plugin-libde265:arm64 (1.19.5-1+b1) ... Selecting previously unselected package libheif1:arm64. Preparing to unpack .../25-libheif1_1.19.5-1+b1_arm64.deb ... Unpacking libheif1:arm64 (1.19.5-1+b1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../26-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../27-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../28-liblcms2-2_2.16-2_arm64.deb ... Unpacking liblcms2-2:arm64 (2.16-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../29-libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../30-libglib2.0-0t64_2.82.4-2_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.82.4-2) ... Selecting previously unselected package liblqr-1-0:arm64. Preparing to unpack .../31-liblqr-1-0_0.4.2-2.1+b2_arm64.deb ... Unpacking liblqr-1-0:arm64 (0.4.2-2.1+b2) ... Selecting previously unselected package libltdl7:arm64. Preparing to unpack .../32-libltdl7_2.5.4-2_arm64.deb ... Unpacking libltdl7:arm64 (2.5.4-2) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../33-libopenjp2-7_2.5.0-2+b4_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.0-2+b4) ... Selecting previously unselected package libraw23t64:arm64. Preparing to unpack .../34-libraw23t64_0.21.3-1+b1_arm64.deb ... Unpacking libraw23t64:arm64 (0.21.3-1+b1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../35-libdeflate0_1.23-1+b1_arm64.deb ... Unpacking libdeflate0:arm64 (1.23-1+b1) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../36-liblerc4_4.0.0+ds-5_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-5) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../37-libwebp7_1.5.0-0.1_arm64.deb ... 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Setting up libk5crypto3:arm64 (1.21.3-4) ... Setting up libltdl7:arm64 (2.5.4-2) ... Setting up libfftw3-double3:arm64 (3.3.10-2+b1) ... Setting up libglapi-mesa:arm64 (24.3.3-1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:arm64 (14.2.0-14) ... Setting up libraw23t64:arm64 (0.21.3-1+b1) ... Setting up libvulkan1:arm64 (1.4.304.0-1) ... Setting up libboost-atomic1.83-dev:arm64 (1.83.0-4) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.6.0-2) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libnghttp3-dev:arm64 (1.6.0-2) ... Setting up liblzma-dev:arm64 (5.6.3-1+b1) ... Setting up libsigc++-3.0-0:arm64 (3.6.0-2+b1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up robin-map-dev (1.3.0-1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up libnuma1:arm64 (2.0.18-1+b1) ... Setting up libpcre2-posix3:arm64 (10.44-5) ... Setting up dwz (0.15-1+b1) ... Setting up wayland-protocols (1.39-1) ... Setting up libdav1d7:arm64 (1.5.0-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ocl-icd-libopencl1:arm64 (2.3.2-1+b2) ... Setting up libxshmfence1:arm64 (1.3-1+b3) ... Setting up libccp4c0t64:arm64 (8.0.0-4) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libxcb-randr0:arm64 (1.17.0-2+b1) ... Setting up dbus-session-bus-common (1.16.0-1) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libnl-3-200:arm64 (3.7.0-0.3+b1) ... Setting up libtasn1-6:arm64 (4.19.0-3+b3) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up libthai-data (0.1.29-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:arm64 (1.9.1-1) ... Setting up cmake-data (3.31.4-2) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-4) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libwayland-egl1:arm64 (1.23.0-1+b1) ... Setting up libboost-system1.83-dev:arm64 (1.83.0-4) ... Setting up libpaper2:arm64 (2.2.5-0.3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libopengl-dev:arm64 (1.7.0-1+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libcoordgen3:arm64 (3.0.2-1+b2) ... Setting up gemmi (0.6.5+ds-2+b2) ... Setting up sharutils (1:4.15.2-10) ... Setting up dbus-system-bus-common (1.16.0-1) ... useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Setting up libasound2-dev:arm64 (1.2.13-1+b1) ... Setting up libgsl28:arm64 (2.8+dfsg-5) ... Setting up libde265-0:arm64 (1.0.15-1+b2) ... Setting up libsharpyuv-dev:arm64 (1.5.0-0.1) ... Setting up libtasn1-6-dev:arm64 (4.19.0-3+b3) ... Setting up openssl (3.4.0-2) ... Setting up libwebpmux3:arm64 (1.5.0-0.1) ... Setting up libtiffxx6:arm64 (4.5.1+git230720-5) ... Setting up libinchi1.07 (1.07.2+dfsg-1) ... Setting up libdeflate-dev:arm64 (1.23-1+b1) ... Setting up libdrm-common (2.4.123-1) ... Setting up libxcomposite1:arm64 (1:0.4.6-1) ... Setting up readline-common (8.2-6) ... Setting up libicu-dev:arm64 (72.1-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up dbus-bin (1.16.0-1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b6) ... Setting up libblas-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up tao-pegtl-dev (3.2.7-1) ... Setting up libvorbisenc2:arm64 (1.3.7-2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up libxkbcommon0:arm64 (1.7.0-2) ... Setting up libwayland-client0:arm64 (1.23.0-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up libxcb-dri3-0:arm64 (1.17.0-2+b1) ... Setting up libblkid-dev:arm64 (2.40.4-1) ... Setting up libllvm19:arm64 (1:19.1.7-1) ... Setting up libwayland-server0:arm64 (1.23.0-1+b1) ... Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libgsl-dev (2.8+dfsg-5) ... Setting up libxdamage1:arm64 (1:1.1.6-1+b2) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-3) ... Setting up libssm2:arm64 (1.4.0-2+b3) ... Setting up libxau-dev:arm64 (1:1.0.11-1) ... Setting up libboost-chrono1.83-dev:arm64 (1.83.0-4) ... Setting up libpcre2-dev:arm64 (10.44-5) ... Setting up nettle-dev:arm64 (3.10-1+b1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b3) ... Setting up libice-dev:arm64 (2:1.1.1-1) ... Setting up libtool (2.5.4-2) ... Setting up libselinux1-dev:arm64 (3.7-3+b1) ... Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libfribidi-dev:arm64 (1.0.16-1) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libxkbcommon-dev:arm64 (1.7.0-2) ... Setting up gemmi-dev (0.6.5+ds-2+b2) ... Setting up libboost-system-dev:arm64 (1.83.0.2+b2) ... Setting up libpng-dev:arm64 (1.6.45-1) ... Setting up libavahi-common3:arm64 (0.8-16) ... Setting up libboost-serialization1.83-dev:arm64 (1.83.0-4) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libjbig-dev:arm64 (2.1-6.1+b2) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up dbus-daemon (1.16.0-1) ... Setting up libngtcp2-dev:arm64 (1.9.1-1) ... Setting up libffi-dev:arm64 (3.4.6-1) ... Setting up libccp4f0t64:arm64 (8.0.0-4) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:arm64 (3.7.0-0.3+b1) ... Setting up libxnvctrl0:arm64 (535.171.04-1+b1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libvorbisfile3:arm64 (1.3.7-2+b1) ... Setting up libsigc++-3.0-dev:arm64 (3.6.0-2+b1) ... Setting up libxdmcp-dev:arm64 (1:1.1.5-1) ... Setting up libwayland-bin (1.23.0-1+b1) ... Setting up libglib2.0-0t64:arm64 (2.82.4-2) ... Setting up libwebp-dev:arm64 (1.5.0-0.1) ... Setting up libllvm17t64:arm64 (1:17.0.6-20+b1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libtiff-dev:arm64 (4.5.1+git230720-5) ... Setting up libxfixes3:arm64 (1:6.0.0-2+b3) ... Setting up libboost-date-time1.83-dev:arm64 (1.83.0-4) ... Setting up x11proto-core-dev (2024.1-1) ... Setting up libldap-dev:arm64 (2.6.9+dfsg-1) ... Setting up dbus (1.16.0-1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-5+b1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libxinerama1:arm64 (2:1.1.4-3+b3) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up libxrandr2:arm64 (2:1.5.4-1+b2) ... Setting up libelf-dev:arm64 (0.192-4) ... Setting up libboost-regex1.83-dev:arm64 (1.83.0-4) ... Setting up gir1.2-glib-2.0:arm64 (2.82.4-2) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.7-2+b1) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up libssm-dev:arm64 (1.4.0-2+b3) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up libdrm2:arm64 (2.4.123-1) ... Setting up libdatrie-dev:arm64 (0.2.13-3+b1) ... Setting up liblqr-1-0:arm64 (0.4.2-2.1+b2) ... Setting up gir1.2-glib-2.0-dev:arm64 (2.82.4-2) ... Setting up groff-base (1.23.0-7) ... Setting up libwayland-cursor0:arm64 (1.23.0-1+b1) ... Setting up libpam-systemd:arm64 (257.2-2) ... Setting up libharfbuzz0b:arm64 (10.2.0-1) ... Setting up libgirepository-1.0-1:arm64 (1.82.0-4) ... Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.12+dfsg-1+b1) ... Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libfontconfig1:arm64 (2.15.0-2) ... Setting up libsm6:arm64 (2:1.2.4-1) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-3) ... Setting up libavahi-client3:arm64 (0.8-16) ... Setting up libmount-dev:arm64 (2.40.4-1) ... Setting up libp11-kit-dev:arm64 (0.25.5-3) ... Setting up libgraphene-1.0-0:arm64 (1.10.8-5) ... Setting up libpython3-stdlib:arm64 (3.13.1-2) ... Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ... Setting up libpython3.13:arm64 (3.13.1-3) ... Setting up libgnutls30t64:arm64 (3.8.8-2) ... Setting up gir1.2-graphene-1.0:arm64 (1.10.8-5) ... Setting up libboost-thread1.83-dev:arm64 (1.83.0-4) ... Setting up libvorbis-dev:arm64 (1.3.7-2+b1) ... Setting up libgnutls-openssl27t64:arm64 (3.8.8-2) ... Setting up gtk-update-icon-cache (4.16.12+ds-1) ... Setting up libnghttp2-dev:arm64 (1.64.0-1) ... Setting up libibverbs1:arm64 (55.0-1) ... Setting up fontconfig (2.15.0-2) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b3) ... Setting up libgio-2.0-dev:arm64 (2.82.4-2) ... Setting up libharfbuzz-icu0:arm64 (10.2.0-1) ... Setting up libxcb1-dev:arm64 (1.17.0-2+b1) ... Setting up libglibmm-2.68-1t64:arm64 (2.82.0-1) ... Setting up libxi6:arm64 (2:1.8.2-1) ... Setting up gir1.2-gdkpixbuf-2.0:arm64 (2.42.12+dfsg-1+b1) ... Setting up libccp4-dev:arm64 (8.0.0-4) ... Setting up ibverbs-providers:arm64 (55.0-1) ... Setting up python3.13 (3.13.1-3) ... Setting up libgirepository-2.0-0:arm64 (2.82.4-2) ... Setting up libsm-dev:arm64 (2:1.2.4-1) ... Setting up libdrm-radeon1:arm64 (2.4.123-1) ... Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxcursor1:arm64 (1:1.2.3-1) ... Setting up nanobind-dev (2.4.0-1) ... Setting up libpango-1.0-0:arm64 (1.56.1-1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libx11-dev:arm64 (2:1.8.10-2) ... Setting up libcloudproviders0:arm64 (0.3.6-1+b1) ... Setting up bc (1.07.1-4+b1) ... Setting up libglib2.0-bin (2.82.4-2) ... Setting up python3 (3.13.1-2) ... Setting up libharfbuzz-gobject0:arm64 (10.2.0-1) ... Setting up libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Setting up python3-zipp (3.21.0-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhwloc-plugins:arm64 (2.11.2-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' -> '/usr/lib/systemd/system/man-db.timer'. Setting up libwayland-dev:arm64 (1.23.0-1+b1) ... Setting up libdw-dev:arm64 (0.192-4) ... Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libcolord2:arm64 (1.4.7-1+b2) ... Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libfreetype-dev:arm64 (2.13.3+dfsg-1) ... Setting up libdconf1:arm64 (0.40.0-5) ... Setting up libcairomm-1.16-1:arm64 (1.18.0-1+b2) ... Setting up libxfixes-dev:arm64 (1:6.0.0-2+b3) ... Setting up libxcb-shm0-dev:arm64 (1.17.0-2+b1) ... Setting up dbus-user-session (1.16.0-1) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libgnutls-dane0t64:arm64 (3.8.8-2) ... Setting up libharfbuzz-cairo0:arm64 (10.2.0-1) ... Setting up adwaita-icon-theme (47.0-2) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up python3-certifi (2024.12.14+ds-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up gir1.2-girepository-2.0:arm64 (1.82.0-4) ... Setting up libgssrpc4t64:arm64 (1.21.3-4) ... Setting up libpython3.13-dev:arm64 (3.13.1-3) ... Setting up python3-gi (3.50.0-4) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b2) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up libxcb-render0-dev:arm64 (1.17.0-2+b1) ... Setting up libpmix2t64:arm64 (5.0.6-1) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up libxext-dev:arm64 (2:1.3.4-1+b3) ... Setting up libthai-dev:arm64 (0.1.29-2+b1) ... Setting up libgdk-pixbuf2.0-bin (2.42.12+dfsg-1+b1) ... Setting up libharfbuzz-subset0:arm64 (10.2.0-1) ... Setting up librdmacm1t64:arm64 (55.0-1) ... Setting up libcairo-gobject2:arm64 (1.18.2-2) ... Setting up libpangoft2-1.0-0:arm64 (1.56.1-1) ... Setting up libxi-dev:arm64 (2:1.8.2-1) ... Setting up libxrender-dev:arm64 (1:0.9.10-1.1+b3) ... Setting up libcups2t64:arm64 (2.4.10-2+b1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ... Setting up libhsakmt1:arm64 (6.1.2+ds-1) ... Setting up libboost-thread-dev:arm64 (1.83.0.2+b2) ... Setting up libpangocairo-1.0-0:arm64 (1.56.1-1) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-4) ... Setting up libxdamage-dev:arm64 (1:1.1.6-1+b2) ... Setting up libgnutls28-dev:arm64 (3.8.8-2) ... Setting up libcairo-script-interpreter2:arm64 (1.18.2-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up libfabric1:arm64 (1.17.0-3.1) ... Setting up mesa-libgallium:arm64 (24.3.3-1) ... Setting up libgio-2.0-dev-bin (2.82.4-2) ... Setting up libvulkan-dev:arm64 (1.4.304.0-1) ... Setting up gir1.2-freedesktop:arm64 (1.82.0-4) ... Setting up girepository-tools:arm64 (2.82.4-2) ... Setting up libpython3-dev:arm64 (3.13.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpangoxft-1.0-0:arm64 (1.56.1-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:arm64 (8.11.1-1+b1) ... Setting up librdkit1t64 (202409.4-1) ... Setting up libkdb5-10t64:arm64 (1.21.3-4) ... Setting up libgbm1:arm64 (24.3.3-1) ... Setting up libfontconfig-dev:arm64 (2.15.0-2) ... Setting up libxcomposite-dev:arm64 (1:0.4.6-1) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3.13-dev (3.13.1-3) ... Setting up libxcursor-dev:arm64 (1:1.2.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libgl1-mesa-dri:arm64 (24.3.3-1) ... Setting up pango1.0-tools (1.56.1-1) ... Setting up libcurl3t64-gnutls:arm64 (8.11.1-1+b1) ... Setting up debhelper (13.24.1) ... Setting up dconf-service (0.40.0-5) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.9.1-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up gir1.2-harfbuzz-0.0:arm64 (10.2.0-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up gir1.2-pango-1.0:arm64 (1.56.1-1) ... Setting up libxrandr-dev:arm64 (2:1.5.4-1+b2) ... Setting up libegl-mesa0:arm64 (24.3.3-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-rdkit (202409.4-1) ... Setting up python3-dev (3.13.1-2) ... Setting up gir1.2-freedesktop-dev:arm64 (1.82.0-4) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up libboost-python1.83-dev (1.83.0-4) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up librdkit-dev (202409.4-1) ... Setting up libxinerama-dev:arm64 (2:1.1.4-3+b3) ... Setting up libhsa-runtime64-1:arm64 (6.1.2-2) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-4) ... Setting up libegl1:arm64 (1.7.0-1+b2) ... Setting up cmake (3.31.4-2) ... Setting up libpangomm-2.48-1t64:arm64 (2.56.1-1) ... Setting up libxft-dev:arm64 (2.3.6-1+b3) ... Setting up krb5-multidev:arm64 (1.21.3-4) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up libgs10-common (10.04.0~dfsg-2) ... Setting up libglib2.0-dev-bin (2.82.4-2) ... Setting up libglx-mesa0:arm64 (24.3.3-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up libglx0:arm64 (1.7.0-1+b2) ... Setting up dconf-gsettings-backend:arm64 (0.40.0-5) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up libkrb5-dev:arm64 (1.21.3-4) ... Setting up libgl1:arm64 (1.7.0-1+b2) ... Setting up libamdhip64-5 (5.7.1-5) ... Setting up libglib2.0-dev:arm64 (2.82.4-2) ... Setting up libgraphene-1.0-dev:arm64 (1.10.8-5) ... Setting up libglx-dev:arm64 (1.7.0-1+b2) ... Setting up libcairo2-dev:arm64 (1.18.2-2) ... Setting up libglibmm-2.68-dev:arm64 (2.82.0-1) ... Setting up libgtk-4-common (4.16.12+ds-1) ... Setting up libcairomm-1.16-dev:arm64 (1.18.0-1+b2) ... Setting up libgl-dev:arm64 (1.7.0-1+b2) ... Setting up libgs10:arm64 (10.04.0~dfsg-2+b1) ... Setting up dh-python (6.20250108) ... Setting up libgdk-pixbuf-2.0-dev:arm64 (2.42.12+dfsg-1+b1) ... Setting up python-gi-dev (3.50.0-4) ... Setting up libucx0:arm64 (1.17.0+ds-3) ... Setting up libharfbuzz-dev:arm64 (10.2.0-1) ... Setting up libegl-dev:arm64 (1.7.0-1+b2) ... Setting up libepoxy-dev:arm64 (1.5.10-2) ... Setting up ghostscript (10.04.0~dfsg-2+b1) ... Setting up libcurl4-gnutls-dev:arm64 (8.11.1-1+b1) ... Setting up libpango1.0-dev:arm64 (1.56.1-1) ... Setting up libgtk-4-1:arm64 (4.16.12+ds-1) ... Setting up libpangomm-2.48-dev:arm64 (2.56.1-1) ... Setting up libgles-dev:arm64 (1.7.0-1+b2) ... Setting up gir1.2-gtk-4.0:arm64 (4.16.12+ds-1) ... Setting up libopenmpi40:arm64 (5.0.6-3) ... Setting up sfftw2 (2.1.5-7+b1) ... Setting up libglvnd-dev:arm64 (1.7.0-1+b2) ... Setting up fftw2 (2.1.5-7+b1) ... Setting up sfftw-dev (2.1.5-7+b1) ... Setting up libgtkmm-4.0-0:arm64 (4.16.0-1) ... Setting up libclipper2:arm64 (2.1.20201109-2+b3) ... Setting up fftw-dev (2.1.5-7+b1) ... Setting up libegl1-mesa-dev:arm64 (24.3.3-1) ... Setting up libgtk-4-dev:arm64 (4.16.12+ds-1) ... Setting up libclipper-dev:arm64 (2.1.20201109-2+b3) ... Setting up libgtkmm-4.0-dev:arm64 (4.16.0-1) ... Setting up libheif-plugin-dav1d:arm64 (1.19.5-1+b1) ... Setting up libheif-plugin-libde265:arm64 (1.19.5-1+b1) ... Setting up libheif1:arm64 (1.19.5-1+b1) ... Setting up libmagickcore-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... Setting up libmagickwand-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... Setting up imagemagick-7.q16 (8:7.1.1.43+dfsg1-1) ... update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist Setting up imagemagick (8:7.1.1.43+dfsg1-1) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for systemd (257.2-2) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/307709/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/307709/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/coot-1.1.09+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../coot_1.1.09+dfsg-4_source.changes dpkg-buildpackage: info: source package coot dpkg-buildpackage: info: source version 1.1.09+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_clean --buildsystem cmake make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'macros'. libtoolize: copying file 'macros/libtool.m4' libtoolize: copying file 'macros/ltoptions.m4' libtoolize: copying file 'macros/ltsugar.m4' libtoolize: copying file 'macros/ltversion.m4' libtoolize: copying file 'macros/lt~obsolete.m4' configure.ac:41: installing './compile' configure.ac:31: installing './missing' MoleculesToTriangles/CXXClasses/Makefile.am: installing './depcomp' api/Makefile.am:113: installing './py-compile' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_configure -- --with-enhanced-ligand-tools --disable-static --with-gemmi=/usr/lib/aarch64-linux-gnu --with-libdw --with-sound ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-enhanced-ligand-tools --disable-static --with-gemmi=/usr/lib/aarch64-linux-gnu --with-libdw --with-sound checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking which libtool initialization strategy to adopt... AC-PROG-LIBTOOL checking what warning flags to pass to the C compiler... -Wall -Wunused checking what language compliance flags to pass to the C compiler... checking what warning flags to pass to the C++ compiler... -Wall -Wno-unused checking what language compliance flags to pass to the C++ compiler... checking for sys/stdtypes.h... no checking for OpenMP flag of C compiler... -fopenmp checking whether g++ supports C++11 features by default... yes checking for std::thread in thread... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking if this is MINGW on Windows... no checking if this is msys2 windows 64... no checking for libpng >= 1.2... yes checking for cairo >= 1.14... yes checking for SQLite3... yes checking for libdw >= 0.20... yes checking for mmdb2... yes checking for ssm... yes checking for non-prefixed single-precision FFTW2 (fftw.h)... no yes checking for Clipper... yes checking for gsl... yes checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_blas_dgemm in -lgsl... yes checking for glm >= 0.9.9... yes checking for gtk4 >= 4.4... yes checking for epoxy >= 1.5... yes checking for a Python interpreter with version >= 3.7... python3 checking for python3... /usr/bin/python3 checking for python3 version... 3.13 checking for python3 platform... linux checking for python3 script directory... ${prefix}/lib/python3/dist-packages checking for python3 extension module directory... ${exec_prefix}/lib/python3/dist-packages checking for python3.13... (cached) /usr/bin/python3 checking for a version of Python >= '2.1.0'... yes checking for the sysconfig Python package... yes checking for Python include path... -I/usr/include/python3.13 checking for Python library path... -L/usr/lib/aarch64-linux-gnu -lpython3.13 checking for Python site-packages path... /usr/lib/python3.13/site-packages checking for Python platform specific site-packages path... /usr/lib/python3.13/site-packages checking python extra libraries... -ldl -lm checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... yes checking python3 module: requests... yes checking for pygobject-3.0 >= 3.36... yes checking for boostlib >= (102000)... yes checking whether the Boost::Thread library is available... yes checking for exit in -lboost_thread... yes checking whether the Boost::Python library is available... yes checking whether boost_python is the correct library... no checking whether boost_python312 is the correct library... yes checking for RDKit in /usr OK, good we found RDKit in /usr ENHANCED_LIGAND_TOOLS_CPPFLAGS -DMAKE_ENHANCED_LIGAND_TOOLS checking for GEMMI... yes checking build type... Linux-aarch64-debian-trixie-sid-gtk4 checking for sound... yes checking for vorbisfile >= 1.2... yes checking for alsa >= 1.2... yes Not using MySQL database checking for curl >= 7.9.7... 8.11.1 checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating macros/Makefile config.status: creating pdb-templates/Makefile config.status: creating scheme/Makefile config.status: creating python/Makefile config.status: creating compat/Makefile config.status: creating utils/Makefile config.status: creating coot-utils/Makefile config.status: creating protein_db/Makefile config.status: creating ccp4mg-utils/Makefile config.status: creating coords/Makefile config.status: creating db-main/Makefile config.status: creating density-contour/Makefile config.status: creating angles/Makefile config.status: creating mini-mol/Makefile config.status: creating skeleton/Makefile config.status: creating ligand/Makefile config.status: creating geometry/Makefile config.status: creating ideal/Makefile config.status: creating build/Makefile config.status: creating analysis/Makefile config.status: creating high-res/Makefile config.status: creating cootaneer/Makefile config.status: creating cootilus/Makefile config.status: creating greg-tests/Makefile config.status: creating python-tests/Makefile config.status: creating lidia-core/Makefile config.status: creating doc/Makefile config.status: creating validation-graphs/Makefile config.status: creating python/coot_load_modules.py config.status: creating data/Makefile config.status: creating data/rama-coeffs/Makefile config.status: creating data/metal/Makefile config.status: creating data/cho-models/Makefile config.status: creating data/cho-acedrg/Makefile config.status: creating glTF/Makefile config.status: creating pixmaps/Makefile config.status: creating pixmaps/icons/Makefile config.status: creating textures/Makefile config.status: creating sounds/Makefile config.status: creating rama-data/Makefile config.status: creating man/Makefile config.status: creating api/Makefile config.status: creating pli/Makefile config.status: creating pyrogen/Makefile config.status: creating pyrogen/pyrogen config.status: creating layla/Makefile config.status: creating MoleculesToTriangles/Makefile config.status: creating MoleculesToTriangles/CXXSurface/Makefile config.status: creating MoleculesToTriangles/CXXSurface/MoleculesToTrianglesCXXSurface.pc config.status: creating MoleculesToTriangles/CXXClasses/Makefile config.status: creating MoleculesToTriangles/CXXClasses/MoleculesToTrianglesCXXClasses.pc config.status: creating auxil/Makefile config.status: creating auxil/catcheck/Makefile config.status: creating auxil/rama/Makefile config.status: creating auxil/sec-str/Makefile config.status: creating auxil/strand-analysis/Makefile config.status: creating auxil/vectors/Makefile config.status: creating src/Makefile config.status: creating src/coot config.status: creating src/coot-relocatable-binaries config.status: creating ui/Makefile config.status: executing depfiles commands config.status: executing libtool commands dh_auto_configure --buildsystem cmake cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Looking for mmdb2/mmdb_defs.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libmmdb2.so -- Looking for ssm/ssm_vxedge.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libssm.so -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for clipper/clipper.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-core.so -- FFTW2 libraries - /usr/lib/libsfftw.so -- - /usr/lib/libsrfftw.so -- FFTW2 header directory - /usr/include -- Performing Test _LINKING_WITH_CLIPPER_CORE -- Performing Test _LINKING_WITH_CLIPPER_CORE - Success -- Looking for clipper/clipper-mmdb.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-mmdb.so -- Looking for clipper/clipper-ccp4.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so -- Looking for clipper/clipper-contrib.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-contrib.so -- Looking for clipper/clipper-minimol.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-minimol.so -- Looking for clipper/clipper-cif.h - /usr/include -- Found CCP4: /usr/lib/aarch64-linux-gnu/libclipper-cif.so -- CCP4 include directory: /usr/include -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/aarch64-linux-gnu/libblas.so -- Found GSL: /usr/include (found version "2.8") -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found PNG: /usr/lib/aarch64-linux-gnu/libpng.so (found version "1.6.45") -- Found gemmi version 0.6.5 -- Found Python: /usr/bin/python3 (found version "3.13.1") found components: Interpreter CMake Warning (dev) at CMakeLists.txt:27 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams system python regex thread serialization -- Found Python: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3.10") found components: Interpreter Development.Module Development.SABIModule -- Note: MAKE_ENHANCED_LIGAND_TOOLS was not enabled -- Configuring done (4.0s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' Making all in auxil make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making all in catcheck make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' Making all in rama make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' Making all in sec-str make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' Making all in strand-analysis make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory 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-DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c getopt1.cc -fPIC -DPIC -o .libs/getopt1.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c getopt.cc -fPIC -DPIC -o .libs/getopt.o /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-compat.la -rpath /usr/lib/aarch64-linux-gnu getopt.lo getopt1.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/getopt.o .libs/getopt1.o -L/usr/lib/gcc/aarch64-linux-gnu/14 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'/build/reproducible-path/coot-1.1.09+dfsg/compat' Making all in utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 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compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dodec.cc -fPIC -DPIC -o .libs/dodec.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gdk-keysyms.cc -fPIC -DPIC -o .libs/gdk-keysyms.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c base64-encode-decode.cc -fPIC -DPIC -o .libs/base64-encode-decode.o In file included from coot-fasta.cc:25: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from setup-syminfo.cc:27: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from threads.cc:27: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from hsv-rgb.cc:29: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o split-indices.lo split-indices.cc In file included from gdk-keysyms.cc:23: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from atomic-numbers.cc:22: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o radix.lo radix.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o logging.lo logging.cc In file included from pir-alignment.cc:28: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-utils.cc:59: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o insertion-sort.lo insertion-sort.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c radix.cc -fPIC -DPIC -o .libs/radix.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o colour-holder.lo colour-holder.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c logging.cc -fPIC -DPIC -o .libs/logging.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c insertion-sort.cc -fPIC -DPIC -o .libs/insertion-sort.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c split-indices.cc -fPIC -DPIC -o .libs/split-indices.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c colour-holder.cc -fPIC -DPIC -o .libs/colour-holder.o /bin/sh ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-utils.lo coot-fasta.lo atomic-numbers.lo setup-syminfo.lo gdk-keysyms.lo hsv-rgb.lo dodec.lo win-compat.lo threads.lo align-utils.lo base64-encode-decode.lo pir-alignment.lo split-indices.lo radix.lo logging.lo insertion-sort.lo colour-holder.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -ldw -lelf libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-utils.o .libs/coot-fasta.o .libs/atomic-numbers.o .libs/setup-syminfo.o .libs/gdk-keysyms.o .libs/hsv-rgb.o .libs/dodec.o .libs/win-compat.o .libs/threads.o .libs/align-utils.o .libs/base64-encode-decode.o .libs/pir-alignment.o .libs/split-indices.o .libs/radix.o .libs/logging.o .libs/insertion-sort.o .libs/colour-holder.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -ldw -lelf -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-utils.so.0 -o .libs/libcoot-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-utils.so.0" && ln -s "libcoot-utils.so.0.0.0" "libcoot-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-utils.so" && ln -s "libcoot-utils.so.0.0.0" "libcoot-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-utils.la" && ln -s "../libcoot-utils.la" "libcoot-utils.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' Making all in protein_db make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db.lo protein_db.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db_utils.lo protein_db_utils.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rna_db.lo rna_db.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db.cpp -fPIC -DPIC -o .libs/protein_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db_utils.cpp -fPIC -DPIC -o .libs/protein_db_utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rna_db.cpp -fPIC -DPIC -o .libs/rna_db.o /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-protein-db.la -rpath /usr/lib/aarch64-linux-gnu protein_db.lo protein_db_utils.lo rna_db.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/protein_db.o .libs/protein_db_utils.o .libs/rna_db.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-protein-db.so.0 -o .libs/libcoot-protein-db.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-protein-db.so.0" && ln -s "libcoot-protein-db.so.0.0.0" "libcoot-protein-db.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-protein-db.so" && ln -s "libcoot-protein-db.so.0.0.0" "libcoot-protein-db.so") libtool: link: ( cd ".libs" && rm -f "libcoot-protein-db.la" && ln -s "../libcoot-protein-db.la" "libcoot-protein-db.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' Making all in mini-mol make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-mol.lo mini-mol.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-mol-utils.lo mini-mol-utils.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-quads.lo atom-quads.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-quads.cc -fPIC -DPIC -o .libs/atom-quads.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-mol-utils.cc -fPIC -DPIC -o .libs/mini-mol-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-mol.cc -fPIC -DPIC -o .libs/mini-mol.o In file included from mini-mol.hh:29, from mini-mol-utils.hh:22, from mini-mol-utils.cc:22: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from mini-mol.hh:29, from mini-mol.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ mini-mol.cc: In member function 'std::pair coot::minimol::molecule::get_pos() const': mini-mol.cc:1654:36: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1654 | coot::minimol::molecule::get_pos() const { | ^~~~~ /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/aarch64-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-mini-mol.so.0 -o .libs/libcoot-mini-mol.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so.0" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so") libtool: link: ( cd ".libs" && rm -f "libcoot-mini-mol.la" && ln -s "../libcoot-mini-mol.la" "libcoot-mini-mol.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' Making all in geometry make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cif-parse.lo cif-parse.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-geometry.lo protein-geometry.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-geometry-mmdb.lo protein-geometry-mmdb.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-sbase.lo read-sbase.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 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-DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glyco-tools.lo glyco-tools.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" 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--mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o srs-interface.lo srs-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-geometry-mmdb.cc -fPIC -DPIC -o .libs/protein-geometry-mmdb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dictionary-residue.cc -fPIC -DPIC -o .libs/dictionary-residue.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mol-utils.cc -fPIC -DPIC -o .libs/mol-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c srs-interface.cc -fPIC -DPIC -o .libs/srs-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-sbase.cc -fPIC -DPIC -o .libs/read-sbase.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse.cc -fPIC -DPIC -o .libs/cif-parse.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dict-utils.cc -fPIC -DPIC -o .libs/dict-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c glyco-tools.cc -fPIC -DPIC -o .libs/glyco-tools.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c energy-lib.cc -fPIC -DPIC -o .libs/energy-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chem_mods.cc -fPIC -DPIC -o .libs/chem_mods.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-geometry.cc -fPIC -DPIC -o .libs/protein-geometry.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c link.cc -fPIC -DPIC -o .libs/link.o In file included from srs-interface.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from energy-lib.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from read-sbase.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-donor-acceptors.lo protein-donor-acceptors.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-donor-acceptors.cc -fPIC -DPIC -o .libs/protein-donor-acceptors.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-graph.lo lbg-graph.cc In file included from dict-utils.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from dictionary-residue.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from protein-geometry.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from glyco-tools.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-graph.cc -fPIC -DPIC -o .libs/lbg-graph.o In file included from cif-parse.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from chem_mods.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from link.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dreiding.lo dreiding.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main-chain.lo main-chain.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o residue-and-atom-specs.lo residue-and-atom-specs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dreiding.cc -fPIC -DPIC -o .libs/dreiding.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c main-chain.cc -fPIC -DPIC -o .libs/main-chain.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-and-atom-specs.cc -fPIC -DPIC -o .libs/residue-and-atom-specs.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o intercept-3GP.lo intercept-3GP.cc In file included from residue-and-atom-specs.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mol-utils-2.lo mol-utils-2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c intercept-3GP.cc -fPIC -DPIC -o .libs/intercept-3GP.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mol-utils-2.cc -fPIC -DPIC -o .libs/mol-utils-2.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cif-parse-link.lo cif-parse-link.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cif-parse-mon-lib.lo cif-parse-mon-lib.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse-link.cc -fPIC -DPIC -o .libs/cif-parse-link.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c hydrophobic.cc -fPIC -DPIC -o .libs/hydrophobic.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-metals-json.lo read-metals-json.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse-mon-lib.cc -fPIC -DPIC -o .libs/cif-parse-mon-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-metals-json.cc -fPIC -DPIC -o .libs/read-metals-json.o In file included from cif-parse-link.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cif-parse-mon-lib.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from read-metals-json.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=link g++ -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/aarch64-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/cif-parse.o .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/mol-utils.o .libs/dictionary-residue.o .libs/link.o .libs/glyco-tools.o .libs/dict-utils.o .libs/chem_mods.o .libs/srs-interface.o .libs/protein-donor-acceptors.o .libs/lbg-graph.o .libs/dreiding.o .libs/main-chain.o .libs/residue-and-atom-specs.o .libs/intercept-3GP.o .libs/mol-utils-2.o .libs/hydrophobic.o .libs/cif-parse-link.o .libs/cif-parse-mon-lib.o .libs/read-metals-json.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/compat/.libs ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so.0" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so") libtool: link: ( cd ".libs" && rm -f "libcoot-geometry.la" && ln -s "../libcoot-geometry.la" "libcoot-geometry.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' Making all in lidia-core make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-shared.lo lbg-shared.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" 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"-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-atom-type-t.cc -fPIC -DPIC -o .libs/cod-atom-type-t.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-types.cc -fPIC -DPIC -o .libs/cod-types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-atom-types.cc -fPIC -DPIC -o .libs/cod-atom-types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-types.cc -fPIC -DPIC -o .libs/atom-types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-residue.cc -fPIC -DPIC -o .libs/get-residue.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bond-record-container-t.cc -fPIC -DPIC -o .libs/bond-record-container-t.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rdkit-interface.cc -fPIC -DPIC -o .libs/rdkit-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chemical-feature-clusters.cc -fPIC -DPIC -o .libs/chemical-feature-clusters.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-shared.cc -fPIC -DPIC -o .libs/lbg-shared.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bond-table-record-t.cc -fPIC -DPIC -o .libs/bond-table-record-t.o In file included from lig-build.cc:25: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o svg-molecule.lo svg-molecule.cc In file included from lbg-molfile.hh:32, from lbg-molfile.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c svg-molecule.cc -fPIC -DPIC -o .libs/svg-molecule.o In file included from atom-types.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from chemical-feature-clusters.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cod-types.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from rdkit-interface.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from svg-molecule.hh:31, from svg-molecule.cc:29: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from chemical-feature-clusters.cc:33: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from rdkit-interface.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from bond-record-container-t.cc:28: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-atom-type-t.cc:28: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-types.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from bond-record-container-t.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from atom-types.cc:30: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cod-atom-type-t.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-atom-types.cc:28: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cod-atom-types.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/aarch64-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/lbg-shared.o .libs/lbg-molfile.o .libs/lig-build.o .libs/rdkit-interface.o .libs/cod-types.o .libs/atom-types.o .libs/bond-record-container-t.o .libs/cod-atom-type-t.o .libs/cod-atom-types.o .libs/bond-table-record-t.o .libs/chemical-feature-clusters.o .libs/get-residue.o .libs/svg-molecule.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-lidia-core.so.0 -o .libs/libcoot-lidia-core.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so.0" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so") libtool: link: ( cd ".libs" && rm -f "libcoot-lidia-core.la" && ln -s "../libcoot-lidia-core.la" "libcoot-lidia-core.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' Making all in coot-utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall 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-DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o peak-search.lo peak-search.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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--tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trim.lo trim.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 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-DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c exp-fit.cc -fPIC -DPIC -o .libs/exp-fit.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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-DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pepflip-using-difference-map.cc -fPIC -DPIC -o .libs/pepflip-using-difference-map.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c peak-search.cc -fPIC -DPIC -o .libs/peak-search.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c slurp-map.cc -fPIC -DPIC -o .libs/slurp-map.o In file included from mmrrcc.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-map-utils.hh:33, from trim.cc:21: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from maps-spherical.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from pepflip-using-difference-map.cc:28: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from coot-map-utils.hh:33, from blob-line.cc:27: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o diff-diff-map-peaks.lo diff-diff-map-peaks.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-texture.lo mini-texture.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o positron.lo positron.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c diff-diff-map-peaks.cc -fPIC -DPIC -o .libs/diff-diff-map-peaks.o In file included from coot-map-utils.hh:33, from find-water-baddies.cc:29: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o texture-as-floats.lo texture-as-floats.cc In file included from slurp-map.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-texture.cc -fPIC -DPIC -o .libs/mini-texture.o In file included from coot-map-utils.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c positron.cc -fPIC -DPIC -o .libs/positron.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils.lo coot-coord-utils.cc coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': coot-map-utils.cc:973:63: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c texture-as-floats.cc -fPIC -DPIC -o .libs/texture-as-floats.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils-nucleotides.lo coot-coord-utils-nucleotides.cc In file included from coot-map-utils.cc:3842: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from positron.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils.cc -fPIC -DPIC -o .libs/coot-coord-utils.o In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/core/hkl_compute.h:48, from coot-map-utils.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': coot-map-utils.cc:682:39: required from here 682 | fphis_out[hri] = fphis_in[hkl]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-rama.lo coot-rama.cc In file included from ../coot-utils/coot-map-utils.hh:33, from mini-texture.cc:28: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/algorithm:60, from coot-map-utils.cc:23: /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = const double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': coot-map-utils.cc:4416:45: required from here 4416 | data.push_back(std::make_pair(A_data[i].first, y)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': coot-map-utils.cc:4501:87: required from here 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': coot-map-utils.cc:4656:69: required from here 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils-nucleotides.cc -fPIC -DPIC -o .libs/coot-coord-utils-nucleotides.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-h-bonds.lo coot-h-bonds.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o hole.lo hole.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-sm-cif.lo read-sm-cif.cc In file included from coot-coord-utils.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-rama.cc -fPIC -DPIC -o .libs/coot-rama.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c hole.cc -fPIC -DPIC -o .libs/hole.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-sm-cif.cc -fPIC -DPIC -o .libs/read-sm-cif.o In file included from coot-coord-utils-nucleotides.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-map-utils.hh:33, from texture-as-floats.cc:27: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bonded-pairs.lo bonded-pairs.cc In file included from coot-rama.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-h-bonds.cc -fPIC -DPIC -o .libs/coot-h-bonds.o /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o helix-analysis.lo helix-analysis.cc coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': coot-map-utils.cc:973:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bonded-pairs.cc -fPIC -DPIC -o .libs/bonded-pairs.o In file included from hole.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ coot-map-utils.cc: In lambda function: coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ coot-map-utils.cc: In function 'void coot::util::reverse_map(clipper::Xmap*)': coot-map-utils.cc:4713:55: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4713 | std::pair mv = mean_and_variance(xmap); | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o elastic.lo elastic.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c helix-analysis.cc -fPIC -DPIC -o .libs/helix-analysis.o hole.cc: In member function 'std::pair coot::hole::optimize_point(const clipper::Coord_orth&, int)': hole.cc:253:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 253 | coot::hole::optimize_point(const clipper::Coord_orth &pt, int selhnd) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c elastic.cc -fPIC -DPIC -o .libs/elastic.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glyco-torsions.lo glyco-torsions.cc In file included from read-sm-cif.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-least-squares.lo coot-least-squares.cc In file included from /usr/include/clipper/core/clipper_instance.h:49, from read-sm-cif.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': read-sm-cif.cc:1096:38: required from here 1096 | if (!my_fsigf[ih.hkl()].missing()) { | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ In file included from elastic.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c glyco-torsions.cc -fPIC -DPIC -o .libs/glyco-torsions.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-overlaps.lo atom-overlaps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-least-squares.cc -fPIC -DPIC -o .libs/coot-least-squares.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o reduce.lo reduce.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-selection-container.lo atom-selection-container.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o contact-info.lo contact-info.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-overlaps.cc -fPIC -DPIC -o .libs/atom-overlaps.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c reduce.cc -fPIC -DPIC -o .libs/reduce.o coot-map-utils.cc: In lambda function: coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from glyco-torsions.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c contact-info.cc -fPIC -DPIC -o .libs/contact-info.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-shelx-ins.lo coot-shelx-ins.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-selection-container.cc -fPIC -DPIC -o .libs/atom-selection-container.o coot-map-utils.cc: In lambda function: coot-map-utils.cc:4501:87: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from atom-overlaps.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-shelx-ins.cc -fPIC -DPIC -o .libs/coot-shelx-ins.o In file included from reduce.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o secondary-structure-headers.lo secondary-structure-headers.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c secondary-structure-headers.cc -fPIC -DPIC -o .libs/secondary-structure-headers.o In file included from atom-selection-container.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-shelx-ins.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o plane-utils.lo plane-utils.cc In file included from atom-selection-container.cc:33: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c plane-utils.cc -fPIC -DPIC -o .libs/plane-utils.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-beta-deviations.lo c-beta-deviations.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lidia-core-functions.lo lidia-core-functions.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-beta-deviations.cc -fPIC -DPIC -o .libs/c-beta-deviations.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lidia-core-functions.cc -fPIC -DPIC -o .libs/lidia-core-functions.o In file included from atom-selection-container.cc:915: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/sh ../libtool --tag=CXX 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-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c helix-like.cc -fPIC -DPIC -o .libs/helix-like.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c merge-atom-selections.cc -fPIC -DPIC -o .libs/merge-atom-selections.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c contacts-by-bricks.cc -fPIC -DPIC -o .libs/contacts-by-bricks.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from lidia-core-functions.cc:29: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from contacts-by-bricks.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o stack-and-pair.lo stack-and-pair.cc In file included from merge-atom-selections.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fast-eigens.lo fast-eigens.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c stack-and-pair.cc -fPIC -DPIC -o .libs/stack-and-pair.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o strand-fragments.lo strand-fragments.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fast-eigens.cc -fPIC -DPIC -o .libs/fast-eigens.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c strand-fragments.cc -fPIC -DPIC -o .libs/strand-fragments.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sfcalc-genmap.lo sfcalc-genmap.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cablam-markup.lo cablam-markup.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_shiftfield.lo coot_shiftfield.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sfcalc-genmap.cc -fPIC -DPIC -o .libs/sfcalc-genmap.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cablam-markup.cc -fPIC -DPIC -o .libs/cablam-markup.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o shiftfield.lo shiftfield.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_shiftfield.cpp -fPIC -DPIC -o .libs/coot_shiftfield.o coot-map-utils.cc: In function 'bool coot::util::map_fill_from_mtz(clipper::Xmap*, std::string, std::string, std::string, std::string, short int, float, short int, float)': coot-map-utils.cc:59:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 59 | coot::util::map_fill_from_mtz(clipper::Xmap *xmap, | ^~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c shiftfield.cpp -fPIC -DPIC -o .libs/shiftfield.o In file included from cablam-markup.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from sfcalc-genmap.cc:30: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_abcd_from_phifom; T = clipper::datatypes::ABCD]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::ABCD' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fib-sphere.lo fib-sphere.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from coot_shiftfield.h:31, from coot_shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': coot_shiftfield.cpp:153:81: required from here 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': coot_shiftfield.cpp:209:29: required from here 209 | fphi[ih] = fc[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from shiftfield.h:31, from shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::F_phi; C = clipper::datatypes::Compute_scale_u_aniso >; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': coot_shiftfield.cpp:153:67: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; coot_shiftfield.cpp:209:16: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fib-sphere.cc -fPIC -DPIC -o .libs/fib-sphere.o /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o polar-atoms.lo polar-atoms.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o 3d-texture.lo 3d-texture.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c polar-atoms.cc -fPIC -DPIC -o .libs/polar-atoms.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o merge-molecules.lo merge-molecules.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fragment-container.lo fragment-container.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c 3d-texture.cc -fPIC -DPIC -o .libs/3d-texture.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fragment-container.cc -fPIC -DPIC -o .libs/fragment-container.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mutate.lo mutate.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c merge-molecules.cc -fPIC -DPIC -o .libs/merge-molecules.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o merge-C-and-N-terminii.lo merge-C-and-N-terminii.cc /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mutate.cc -fPIC -DPIC -o .libs/mutate.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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-DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cylinder.lo cylinder.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cylinder-with-rotation-translation.lo cylinder-with-rotation-translation.cc In file included from merge-C-and-N-terminii.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o oct.lo oct.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o prideout-octasphere.lo prideout-octasphere.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cylinder.cc -fPIC -DPIC -o .libs/cylinder.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-mesh.lo simple-mesh.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cylinder-with-rotation-translation.cc -fPIC -DPIC -o .libs/cylinder-with-rotation-translation.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o shapes.lo shapes.cc coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 121 | coot::shift_field_b_factor_refinement(const clipper::HKL_data< clipper::datatypes::F_sigF > &fo0, | ^~~~ coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c oct.cc -fPIC -DPIC -o .libs/oct.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c prideout-octasphere.cc -fPIC -DPIC -o .libs/prideout-octasphere.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-mesh.cc -fPIC -DPIC -o .libs/simple-mesh.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c shapes.cc -fPIC -DPIC -o .libs/shapes.o coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 coot_shiftfield.cpp:209:29: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; | ^ In file included from mutate.cc:644: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cmtz-interface.lo cmtz-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-extras.cc -fPIC -DPIC -o .libs/coot-coord-extras.o In file included from pae.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-lsq.cc -fPIC -DPIC -o .libs/coot-coord-lsq.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-tree-extras.lo coot-tree-extras.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o water-coordination.lo water-coordination.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lsq-improve.lo lsq-improve.cc In file included from coot-coord-lsq.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-tree-extras.cc -fPIC -DPIC -o .libs/coot-tree-extras.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c water-coordination.cc -fPIC -DPIC -o .libs/water-coordination.o In file included from coot-coord-extras.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lsq-improve.cc -fPIC -DPIC -o .libs/lsq-improve.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils-glyco.lo coot-coord-utils-glyco.cc In file included from coot-tree-extras.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o jed-flip.lo jed-flip.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils-glyco.cc -fPIC -DPIC -o .libs/coot-coord-utils-glyco.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-map-heavy.lo coot-map-heavy.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c jed-flip.cc -fPIC -DPIC -o .libs/jed-flip.o In file included from coot-coord-utils-glyco.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-map-heavy.cc -fPIC -DPIC -o .libs/coot-map-heavy.o In file included from ../mini-mol/mini-mol.hh:29, from coot-coord-extras.hh:33, from jed-flip.hh:32, from jed-flip.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-fffear.lo coot-fffear.cc In file included from coot-map-heavy.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-fffear.cc -fPIC -DPIC -o .libs/coot-fffear.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o spherical-harmonics.lo spherical-harmonics.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c spherical-harmonics.cc -fPIC -DPIC -o .libs/spherical-harmonics.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o segmap.lo segmap.cc In file included from ../mini-mol/mini-mol.hh:29, from coot-map-heavy.hh:28, from coot-fffear.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c segmap.cc -fPIC -DPIC -o .libs/segmap.o coot-fffear.cc: In constructor 'coot::util::fffear_search::fffear_search(mmdb::Manager*, int, const clipper::Xmap&, float, bool)': coot-fffear.cc:159:70: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 159 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo glyco-torsions.lo coot-least-squares.lo atom-overlaps.lo reduce.lo atom-selection-container.lo contact-info.lo coot-shelx-ins.lo secondary-structure-headers.lo plane-utils.lo c-beta-deviations.lo lidia-core-functions.lo atom-tools.lo bonded-atoms.lo bricks.lo helix-like.lo merge-atom-selections.lo contacts-by-bricks.lo stack-and-pair.lo fast-eigens.lo strand-fragments.lo sfcalc-genmap.lo cablam-markup.lo coot_shiftfield.lo shiftfield.lo fib-sphere.lo polar-atoms.lo 3d-texture.lo merge-molecules.lo fragment-container.lo mutate.lo merge-C-and-N-terminii.lo cylinder.lo cylinder-with-rotation-translation.lo oct.lo prideout-octasphere.lo simple-mesh.lo shapes.lo cmtz-interface.lo pugixml.lo parse-pisa.lo gltf-export.lo pae.lo ../lidia-core/libcoot-lidia-core.la ../protein_db/libcoot-protein-db.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-utils.o .libs/coot-coord-utils-nucleotides.o .libs/coot-rama.o .libs/coot-h-bonds.o .libs/hole.o .libs/read-sm-cif.o .libs/bonded-pairs.o .libs/helix-analysis.o .libs/elastic.o .libs/glyco-torsions.o .libs/coot-least-squares.o .libs/atom-overlaps.o .libs/reduce.o .libs/atom-selection-container.o .libs/contact-info.o .libs/coot-shelx-ins.o .libs/secondary-structure-headers.o .libs/plane-utils.o .libs/c-beta-deviations.o .libs/lidia-core-functions.o .libs/atom-tools.o .libs/bonded-atoms.o .libs/bricks.o .libs/helix-like.o .libs/merge-atom-selections.o .libs/contacts-by-bricks.o .libs/stack-and-pair.o .libs/fast-eigens.o .libs/strand-fragments.o .libs/sfcalc-genmap.o .libs/cablam-markup.o .libs/coot_shiftfield.o .libs/shiftfield.o .libs/fib-sphere.o .libs/polar-atoms.o .libs/3d-texture.o .libs/merge-molecules.o .libs/fragment-container.o .libs/mutate.o .libs/merge-C-and-N-terminii.o .libs/cylinder.o .libs/cylinder-with-rotation-translation.o .libs/oct.o .libs/prideout-octasphere.o .libs/simple-mesh.o .libs/shapes.o .libs/cmtz-interface.o .libs/pugixml.o .libs/parse-pisa.o .libs/gltf-export.o .libs/pae.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/protein_db/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs ../lidia-core/.libs/libcoot-lidia-core.so ../protein_db/.libs/libcoot-protein-db.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-utils.so.0 -o .libs/libcoot-coord-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-coord-utils.so.0" && ln -s "libcoot-coord-utils.so.0.0.0" "libcoot-coord-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coord-utils.so" && ln -s "libcoot-coord-utils.so.0.0.0" "libcoot-coord-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coord-utils.la" && ln -s "../libcoot-coord-utils.la" "libcoot-coord-utils.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-map-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo pepflip-using-difference-map.lo exp-fit.lo blob-line.lo slurp-map.lo find-water-baddies.lo diff-diff-map-peaks.lo mini-texture.lo positron.lo texture-as-floats.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -lz /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-extras.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo jed-flip.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-extras.o .libs/coot-coord-lsq.o .libs/coot-tree-extras.o .libs/water-coordination.o .libs/lsq-improve.o .libs/coot-coord-utils-glyco.o .libs/jed-flip.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-extras.so.0 -o .libs/libcoot-coord-extras.so.0.0.0 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-utils.o .libs/peak-search.o .libs/peak-search-from-list.o .libs/trim.o .libs/xmap-stats.o .libs/maps-spherical.o .libs/pepflip-using-difference-map.o .libs/exp-fit.o .libs/blob-line.o .libs/slurp-map.o .libs/find-water-baddies.o .libs/diff-diff-map-peaks.o .libs/mini-texture.o .libs/positron.o .libs/texture-as-floats.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -lz -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-utils.so.0 -o .libs/libcoot-map-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-coord-extras.so.0" && ln -s "libcoot-coord-extras.so.0.0.0" "libcoot-coord-extras.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coord-extras.so" && ln -s "libcoot-coord-extras.so.0.0.0" "libcoot-coord-extras.so") libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so.0" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coord-extras.la" && ln -s "../libcoot-coord-extras.la" "libcoot-coord-extras.la" ) libtool: link: ( cd ".libs" && rm -f "libcoot-map-utils.la" && ln -s "../libcoot-map-utils.la" "libcoot-map-utils.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-map-heavy.la -rpath /usr/lib/aarch64-linux-gnu coot-map-heavy.lo coot-fffear.lo spherical-harmonics.lo segmap.lo libcoot-map-utils.la libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-mmrrcc mmrrcc.o ./libcoot-map-utils.la ./libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-heavy.o .libs/coot-fffear.o .libs/spherical-harmonics.o .libs/segmap.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-map-utils.so ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-heavy.so.0 -o .libs/libcoot-map-heavy.so.0.0.0 libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-mmrrcc mmrrcc.o ./.libs/libcoot-map-utils.so ./.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so.0" && ln -s "libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so" && ln -s "libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so") libtool: link: ( cd ".libs" && rm -f "libcoot-map-heavy.la" && ln -s "../libcoot-map-heavy.la" "libcoot-map-heavy.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' Making all in angles make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo.lo `test -f 'AngleInfo.cc' || echo './'`AngleInfo.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo `test -f 'AngleInfo-angle-torsions-autogen.cc' || echo './'`AngleInfo-angle-torsions-autogen.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo `test -f 'AngleInfo-theta_2-autogen.cc' || echo './'`AngleInfo-theta_2-autogen.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo-angle-torsions-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo-theta_2-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-AngleInfo.la -rpath /usr/lib/aarch64-linux-gnu libcoot_AngleInfo_la-AngleInfo.lo libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-AngleInfo.so.0 -o .libs/libcoot-AngleInfo.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-AngleInfo.so.0" && ln -s "libcoot-AngleInfo.so.0.0.0" "libcoot-AngleInfo.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-AngleInfo.so" && ln -s "libcoot-AngleInfo.so.0.0.0" "libcoot-AngleInfo.so") libtool: link: ( cd ".libs" && rm -f "libcoot-AngleInfo.la" && ln -s "../libcoot-AngleInfo.la" "libcoot-AngleInfo.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' Making all in ccp4mg-utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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-DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cartesian.lo cartesian.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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-DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c geomutil.cc -fPIC -DPIC -o .libs/geomutil.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cartesian.cc -fPIC -DPIC -o .libs/cartesian.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c quat.cc -fPIC -DPIC -o .libs/quat.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ppmutil.cc -fPIC -DPIC -o .libs/ppmutil.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mgtree.cc -fPIC -DPIC -o .libs/mgtree.o /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libccp4mg-utils.la -rpath /usr/lib/aarch64-linux-gnu geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo -lpng16 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/geomutil.o .libs/mgtree.o .libs/cartesian.o .libs/matrix.o .libs/quat.o .libs/ppmutil.o -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4mg-utils.so.0 -o .libs/libccp4mg-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libccp4mg-utils.so.0" && ln -s "libccp4mg-utils.so.0.0.0" "libccp4mg-utils.so.0") libtool: link: (cd ".libs" && rm -f "libccp4mg-utils.so" && ln -s "libccp4mg-utils.so.0.0.0" "libccp4mg-utils.so") libtool: link: ( cd ".libs" && rm -f "libccp4mg-utils.la" && ln -s "../libccp4mg-utils.la" "libccp4mg-utils.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' Making all in db-main make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o db-main.lo db-main.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o db-strands.lo db-strands.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c db-strands.cc -fPIC -DPIC -o .libs/db-strands.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c db-main.cc -fPIC -DPIC -o .libs/db-main.o In file included from db-main.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from db-strands.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-db-main.la -rpath /usr/lib/aarch64-linux-gnu db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/db-main.o .libs/db-strands.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../mini-mol/.libs/libcoot-mini-mol.so ../lidia-core/.libs/libcoot-lidia-core.so ../coot-utils/.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-db-main.so.0 -o .libs/libcoot-db-main.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-db-main.so.0" && ln -s "libcoot-db-main.so.0.0.0" "libcoot-db-main.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-db-main.so" && ln -s "libcoot-db-main.so.0.0.0" "libcoot-db-main.so") libtool: link: ( cd ".libs" && rm -f "libcoot-db-main.la" && ln -s "../libcoot-db-main.la" "libcoot-db-main.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' Making all in analysis make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rna-backbone.cc -fPIC -DPIC -o .libs/rna-backbone.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c b-factor-histogram.cc -fPIC -DPIC -o .libs/b-factor-histogram.o In file included from stats.cc:25: stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from kolmogorov.cc:25: stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from mogul.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from mogul.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from daca.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from b-factor-histogram.cc:288: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from rna-backbone.cc:31: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-analysis.la -rpath /usr/lib/aarch64-linux-gnu bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo b-factor-histogram.lo daca.lo rna-backbone.lo ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/bfkurt.o .libs/mogul.o .libs/kolmogorov.o .libs/stats.o .libs/cablam.o .libs/typed-distances.o .libs/b-factor-histogram.o .libs/daca.o .libs/rna-backbone.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-analysis.so.0 -o .libs/libcoot-analysis.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-analysis.so.0" && ln -s "libcoot-analysis.so.0.0.0" "libcoot-analysis.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-analysis.so" && ln -s "libcoot-analysis.so.0.0.0" "libcoot-analysis.so") libtool: link: ( cd ".libs" && rm -f "libcoot-analysis.la" && ln -s "../libcoot-analysis.la" "libcoot-analysis.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-bfactan bfactan.o libcoot-analysis.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-bfactan bfactan.o ./.libs/libcoot-analysis.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' Making all in cootaneer make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o buccaneer-lib.lo buccaneer-lib.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o buccaneer-prot.lo buccaneer-prot.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o buccaneer-sequence.lo buccaneer-sequence.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cootaneer-sequence.lo cootaneer-sequence.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c buccaneer-lib.cpp -fPIC -DPIC -o .libs/buccaneer-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c buccaneer-prot.cpp -fPIC -DPIC -o .libs/buccaneer-prot.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cootaneer-sequence.cpp -fPIC -DPIC -o .libs/cootaneer-sequence.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c buccaneer-sequence.cpp -fPIC -DPIC -o .libs/buccaneer-sequence.o /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootaneer.la -rpath /usr/lib/aarch64-linux-gnu buccaneer-lib.lo buccaneer-prot.lo buccaneer-sequence.lo cootaneer-sequence.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/buccaneer-lib.o .libs/buccaneer-prot.o .libs/buccaneer-sequence.o .libs/cootaneer-sequence.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcootaneer.so.0 -o .libs/libcootaneer.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcootaneer.so.0" && ln -s "libcootaneer.so.0.0.0" "libcootaneer.so.0") libtool: link: (cd ".libs" && rm -f "libcootaneer.so" && ln -s "libcootaneer.so.0.0.0" "libcootaneer.so") libtool: link: ( cd ".libs" && rm -f "libcootaneer.la" && ln -s "../libcootaneer.la" "libcootaneer.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' Making all in ideal make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-rsr.o mini-rsr.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-restraint.lo simple-restraint.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-restraints.lo make-restraints.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ng.lo ng.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o chi-squareds.lo chi-squareds.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 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-DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o distortion.lo distortion.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o chirals.lo chirals.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flanking.lo flanking.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gradients.lo gradients.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 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-DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flanking.cc -fPIC -DPIC -o .libs/flanking.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 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-D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-restraints.cc -fPIC -DPIC -o .libs/make-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" 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-DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-restraint.cc -fPIC -DPIC -o .libs/simple-restraint.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ng.cc -fPIC -DPIC -o .libs/ng.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pepflip.cc -fPIC -DPIC -o .libs/pepflip.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chirals.cc -fPIC -DPIC -o .libs/chirals.o In file included from mini-rsr.cc:56: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from mini-rsr.cc:58: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from chirals.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from flanking.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from ng.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o regularize-minimol.lo regularize-minimol.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c regularize-minimol.cc -fPIC -DPIC -o .libs/regularize-minimol.o In file included from simple-restraint.hh:162, from extra-restraints.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from gradients.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:174, from mini-rsr.cc:60: zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ In file included from simple-restraint.hh:162, from mods.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from mini-rsr.cc:66: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from chi-squareds.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from distortion.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from simple-restraint.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from mini-rsr.cc:41: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from make-restraints.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from regularize-minimol.hh:25, from regularize-minimol.cc:22: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from chirals.cc:35: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ ng.cc: In member function 'void coot::restraints_container_t::analyze_for_bad_restraints(coot::restraint_type_t, double)': ng.cc:2354:97: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2354 | std::pair distortion_pair = rest.distortion(atom, lennard_jones_epsilon); // 2nd arg is not used for bonds | ^ simple-restraint.cc: In member function 'std::pair coot::simple_restraint::distortion(mmdb::Atom**, const double&) const': simple-restraint.cc:4068:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4068 | coot::simple_restraint::distortion(mmdb::PAtom *atoms, const double &lj_epsilon) const { | ^~~~~ simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lograma.lo lograma.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lograma.cpp -fPIC -DPIC -o .libs/lograma.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o process-dfs-in-range.lo process-dfs-in-range.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c process-dfs-in-range.cc -fPIC -DPIC -o .libs/process-dfs-in-range.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o extra-restraints-kk.lo extra-restraints-kk.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c extra-restraints-kk.cc -fPIC -DPIC -o .libs/extra-restraints-kk.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-restraint-kk.lo simple-restraint-kk.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o torsion-bonds.lo torsion-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-restraint-kk.cc -fPIC -DPIC -o .libs/simple-restraint-kk.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c torsion-bonds.cc -fPIC -DPIC -o .libs/torsion-bonds.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-compare-residues.lo coot-compare-residues.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-compare-residues.cc -fPIC -DPIC -o .libs/coot-compare-residues.o In file included from simple-restraint.hh:162, from process-dfs-in-range.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o link-restraints.lo link-restraints.cc In file included from simple-restraint.hh:162, from extra-restraints-kk.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c link-restraints.cc -fPIC -DPIC -o .libs/link-restraints.o In file included from simple-restraint.hh:162, from simple-restraint-kk.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, from coot-compare-residues.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from torsion-bonds.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o parallel-planes.lo parallel-planes.cc simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c parallel-planes.cc -fPIC -DPIC -o .libs/parallel-planes.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pull-restraint.lo pull-restraint.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pull-restraint.cc -fPIC -DPIC -o .libs/pull-restraint.o In file included from parallel-planes.cc:22: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from link-restraints.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trans-peptide.lo trans-peptide.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trans-peptide.cc -fPIC -DPIC -o .libs/trans-peptide.o simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o model-bond-deltas.lo model-bond-deltas.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o write-png.lo write-png.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c model-bond-deltas.cc -fPIC -DPIC -o .libs/model-bond-deltas.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o zo-rama.lo zo-rama.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o crankshaft.lo crankshaft.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c write-png.cc -fPIC -DPIC -o .libs/write-png.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi.lo phi-psi.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o neutron.lo neutron.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c zo-rama.cc -fPIC -DPIC -o .libs/zo-rama.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c crankshaft.cc -fPIC -DPIC -o .libs/crankshaft.o In file included from parallel-planes.cc:23: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi.cc -fPIC -DPIC -o .libs/phi-psi.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c neutron.cc -fPIC -DPIC -o .libs/neutron.o In file included from simple-restraint.hh:162, from pull-restraint.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from zo-rama.hh:42, from write-png.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lv.o lv.cc In file included from zo-rama.hh:42, from zo-rama.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from zo-rama.hh:42, from crankshaft.hh:37, from crankshaft.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from lv.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, from trans-peptide.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from crankshaft.cc:36: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from crankshaft.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from simple-restraint.hh:162, from model-bond-deltas.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1393:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1393 | const zo::rama_table_set &zorts) const { | ^~~~~ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from model-bond-deltas.cc:29: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from simple-restraint.hh:162, from neutron.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': crankshaft.cc:871:71: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 871 | std::pair grads = zorts.df(pp, rt); | ^ crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ In file included from lv.cc:29: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': crankshaft.cc:833:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 833 | coot::crankshaft::optimize_a_triple::df(const gsl_vector *v, | ^~~~ crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ /bin/sh ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-ideal.la -rpath /usr/lib/aarch64-linux-gnu simple-restraint.lo make-restraints.lo ng.lo chi-squareds.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo process-dfs-in-range.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo pull-restraint.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo neutron.lo ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpng16 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/simple-restraint.o .libs/make-restraints.o .libs/ng.o .libs/chi-squareds.o .libs/mods.o .libs/distortion.o .libs/chirals.o .libs/flanking.o .libs/gradients.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/process-dfs-in-range.o .libs/extra-restraints-kk.o .libs/simple-restraint-kk.o .libs/torsion-bonds.o .libs/coot-compare-residues.o .libs/link-restraints.o .libs/parallel-planes.o .libs/pull-restraint.o .libs/trans-peptide.o .libs/model-bond-deltas.o .libs/write-png.o .libs/zo-rama.o .libs/crankshaft.o .libs/phi-psi.o .libs/neutron.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -lpthread ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-ideal.so.0 -o .libs/libcoot-ideal.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-ideal.so.0" && ln -s "libcoot-ideal.so.0.0.0" "libcoot-ideal.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-ideal.so" && ln -s "libcoot-ideal.so.0.0.0" "libcoot-ideal.so") libtool: link: ( cd ".libs" && rm -f "libcoot-ideal.la" && ln -s "../libcoot-ideal.la" "libcoot-ideal.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o mini-rsr-bin mini-rsr.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -lpthread /bin/sh ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o coot-ligand-validation-bin lv.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lpthread libtool: link: g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-ligand-validation-bin lv.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 ./.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so -lpthread libtool: link: g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/mini-rsr-bin mini-rsr.o ./.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' Making all in ligand make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o find-ligand.o find-ligand.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand.lo ligand.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand-extras.lo ligand-extras.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection 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-I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o chi-angles-autogen.lo chi-angles-autogen.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 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-DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dunbrack.cc -fPIC -DPIC -o .libs/dunbrack.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue_by_phi_psi.cc -fPIC -DPIC -o .libs/residue_by_phi_psi.o In file included from find-ligand.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from rigid-body.hh:25, from rigid-body.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ligand-extras.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from ligand.cc:60: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from dunbrack.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ligand-extras.cc: In member function 'std::pair coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager*) const': ligand-extras.cc:176:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 176 | coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager *mol) const { | ^~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from ligand.cc:69: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from ligand.cc:72: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../mini-mol/mini-mol-utils.hh:22, from fast-ss-search.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from chi-angles.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../ideal/simple-restraint.hh:162, from ../ideal/regularize-minimol.hh:25, from wiggly-ligand.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, from helix-placement.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ideal-rna.lo ideal-rna.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o richardson-rotamers.lo richardson-rotamers.cc In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, from residue_by_phi_psi.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ideal-rna.cc -fPIC -DPIC -o .libs/ideal-rna.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c richardson-rotamers.cc -fPIC -DPIC -o .libs/richardson-rotamers.o In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from ligand.cc:55: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o richardson-rotamer.lo richardson-rotamer.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rotamer.lo rotamer.cc In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from residue_by_phi_psi.cc:22: In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t<((bool)std::__and_, std::is_move_assignable<_T2> >::value), std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::residue_by_phi_psi::connecting_atoms_t& coot::residue_by_phi_psi::connecting_atoms_t::operator=(coot::residue_by_phi_psi::connecting_atoms_t&&)' at residue_by_phi_psi.hh:46:13, inlined from 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const' at residue_by_phi_psi.cc:682:73: /usr/include/c++/14/bits/stl_pair.h:938:9: warning: '.coot::residue_by_phi_psi::connecting_atoms_t::upstream_C.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 938 | second = std::forward(__p.second); | ^~~~~~ residue_by_phi_psi.cc: In member function 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const': residue_by_phi_psi.cc:682:80: note: '' declared here 682 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t<((bool)std::__and_, std::is_move_assignable<_T2> >::value), std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::residue_by_phi_psi::connecting_atoms_t& coot::residue_by_phi_psi::connecting_atoms_t::operator=(coot::residue_by_phi_psi::connecting_atoms_t&&)' at residue_by_phi_psi.hh:46:13, inlined from 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const' at residue_by_phi_psi.cc:682:73: /usr/include/c++/14/bits/stl_pair.h:938:9: warning: '.coot::residue_by_phi_psi::connecting_atoms_t::downstream_N.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 938 | second = std::forward(__p.second); | ^~~~~~ residue_by_phi_psi.cc: In member function 'coot::residue_by_phi_psi::connecting_atoms_t coot::residue_by_phi_psi::get_connecting_residue_atoms() const': residue_by_phi_psi.cc:682:80: note: '' declared here 682 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c richardson-rotamer.cc -fPIC -DPIC -o .libs/richardson-rotamer.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer.cc -fPIC -DPIC -o .libs/rotamer.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o torsion-general.lo torsion-general.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rotamer-tables.lo rotamer-tables.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c torsion-general.cc -fPIC -DPIC -o .libs/torsion-general.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer-tables.cc -fPIC -DPIC -o .libs/rotamer-tables.o In file included from rotamer.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o primitive-chi-angles.lo primitive-chi-angles.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dipole.lo dipole.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c primitive-chi-angles.cc -fPIC -DPIC -o .libs/primitive-chi-angles.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o base-pairing.lo base-pairing.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dipole.cc -fPIC -DPIC -o .libs/dipole.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o backrub-rotamer.lo backrub-rotamer.cc In file included from dipole.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from rotamer-tables.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c base-pairing.cc -fPIC -DPIC -o .libs/base-pairing.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trace.lo trace.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trace-2.lo trace-2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c backrub-rotamer.cc -fPIC -DPIC -o .libs/backrub-rotamer.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trace.cc -fPIC -DPIC -o .libs/trace.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trace-2.cc -fPIC -DPIC -o .libs/trace-2.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o multi-peptide.lo multi-peptide.cc In file included from backrub-rotamer.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c multi-peptide.cc -fPIC -DPIC -o .libs/multi-peptide.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligands-db.lo ligands-db.cc In file included from ../mini-mol/mini-mol.hh:29, from trace.hh:29, from trace-2.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o joining-residues.lo joining-residues.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligands-db.cc -fPIC -DPIC -o .libs/ligands-db.o backrub-rotamer.cc: In function 'std::pair > coot::get_clash_score(const minimol::molecule&, atom_selection_container_t, int)': backrub-rotamer.cc:596:76: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 596 | std::pair rotamer_info = a_rotamer.get_pos(); | ^ In file included from ../mini-mol/mini-mol.hh:29, from multi-peptide.hh:32, from trace.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c joining-residues.cc -fPIC -DPIC -o .libs/joining-residues.o In file included from ligands-db.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand-score-card.lo ligand-score-card.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand-score-card.cc -fPIC -DPIC -o .libs/ligand-score-card.o In file included from ../ideal/simple-restraint.hh:162, from multi-peptide.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o side-chain-densities.lo side-chain-densities.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o tube-finder.lo tube-finder.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o smith-waterman.lo smith-waterman.cc In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, from joining-residues.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c side-chain-densities.cc -fPIC -DPIC -o .libs/side-chain-densities.o In file included from ../mini-mol/mini-mol.hh:29, from ligand-score-card.hh:31, from ligand-score-card.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c tube-finder.cc -fPIC -DPIC -o .libs/tube-finder.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c smith-waterman.cc -fPIC -DPIC -o .libs/smith-waterman.o ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from multi-peptide.cc:32: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o side-chain.lo side-chain.cc trace.cc: In constructor 'coot::trace::trace(const clipper::Xmap&)': trace.cc:53:61: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 53 | std::pair mv = util::mean_and_variance(xmap); | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c side-chain.cc -fPIC -DPIC -o .libs/side-chain.o In file included from tube-finder.cc:30: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o refine-isolated-chain.lo refine-isolated-chain.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o find-waters.o find-waters.cc In file included from side-chain-densities.cc:38: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c refine-isolated-chain.cc -fPIC -DPIC -o .libs/refine-isolated-chain.o In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from find-waters.cc:45: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from smith-waterman.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from side-chain.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ tube-finder.cc: In constructor 'coot::tube_finder_t::tube_finder_t(const clipper::Xmap&)': tube-finder.cc:45:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mv = util::mean_and_variance(blurred_xmap); | ^ multi-peptide.cc: In function 'coot::minimol::fragment coot::multi_build_N_terminal_ALA(mmdb::Residue*, mmdb::Residue*, const std::string&, float, int, const protein_geometry&, const clipper::Xmap&, std::pair, bool)': multi-peptide.cc:701:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 701 | coot::multi_build_N_terminal_ALA(mmdb::Residue *res_p, | ^~~~ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-ligands-db.o make-ligands-db.cc side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': side-chain-densities.cc:1293:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~~ In file included from ../ideal/simple-restraint.hh:162, from refine-isolated-chain.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o identify-protein.o identify-protein.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libres-tracer.lo libres-tracer.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-rsr-extend-fragments.lo rama-rsr-extend-fragments.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o new-residue-by-3-phi-psi.lo new-residue-by-3-phi-psi.cc ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c libres-tracer.cc -fPIC -DPIC -o .libs/libres-tracer.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o dSFMT.lo dSFMT.c libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c new-residue-by-3-phi-psi.cc -fPIC -DPIC -o .libs/new-residue-by-3-phi-psi.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-rsr-extend-fragments.cc -fPIC -DPIC -o .libs/rama-rsr-extend-fragments.o In file included from /usr/include/clipper/core/cell.h:50, from /usr/include/clipper/core/coords.h:49, from /usr/include/clipper/core/fftmap.h:49, from /usr/include/clipper/core/xmap.h:49, from multi-peptide.hh:30: In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:228:34: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][0]' may be used uninitialized [-Wmaybe-uninitialized] 228 | { return Vec3( m(0,0)*v[0]+m(0,1)*v[1]+m(0,2)*v[2], | ~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][0]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:228:46: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][2]' may be used uninitialized [-Wmaybe-uninitialized] 228 | { return Vec3( m(0,0)*v[0]+m(0,1)*v[1]+m(0,2)*v[2], | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:228:41: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][1]' may be used uninitialized [-Wmaybe-uninitialized] 228 | { return Vec3( m(0,0)*v[0]+m(0,1)*v[1]+m(0,2)*v[2], | ~~~~~~^~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[0][1]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:230:46: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][2]' may be used uninitialized [-Wmaybe-uninitialized] 230 | m(2,0)*v[0]+m(2,1)*v[1]+m(2,2)*v[2] ); } | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:229:34: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][0]' may be used uninitialized [-Wmaybe-uninitialized] 229 | m(1,0)*v[0]+m(1,1)*v[1]+m(1,2)*v[2], | ~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][0]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:229:46: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][2]' may be used uninitialized [-Wmaybe-uninitialized] 229 | m(1,0)*v[0]+m(1,1)*v[1]+m(1,2)*v[2], | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:229:41: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][1]' may be used uninitialized [-Wmaybe-uninitialized] 229 | m(1,0)*v[0]+m(1,1)*v[1]+m(1,2)*v[2], | ~~~~~~^~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[1][1]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:230:41: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][1]' may be used uninitialized [-Wmaybe-uninitialized] 230 | m(2,0)*v[0]+m(2,1)*v[1]+m(2,2)*v[2] ); } | ~~~~~~^~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][1]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator*(const Mat33&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:116, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:230:34: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][0]' may be used uninitialized [-Wmaybe-uninitialized] 230 | m(2,0)*v[0]+m(2,1)*v[1]+m(2,2)*v[2] ); } | ~~~~~~~~~~~^~~~~~~~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::rot_.clipper::Mat33::mat[2][0]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator+(const Vec3&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:128, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:171:110: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[0]' may be used uninitialized [-Wmaybe-uninitialized] 171 | template inline Vec3 operator +( const Vec3& v1, const Vec3 &v2 ) { return Vec3( v1[0]+v2[0], v1[1]+v2[1], v1[2]+v2[2]); } | ~~~~~^~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[0]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator+(const Vec3&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:128, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:171:123: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[1]' may be used uninitialized [-Wmaybe-uninitialized] 171 | template inline Vec3 operator +( const Vec3& v1, const Vec3 &v2 ) { return Vec3( v1[0]+v2[0], v1[1]+v2[1], v1[2]+v2[2]); } | ~~~~~^~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[1]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ In function 'clipper::Vec3 clipper::operator+(const Vec3&, const Vec3&) [with T = double]', inlined from 'clipper::Coord_orth clipper::operator*(const RTop_orth&, const Coord_orth&)' at /usr/include/clipper/core/coords.h:337:128, inlined from 'void coot::trace::move_seeds_close_to_origin(std::vector*) const' at trace.cc:261:59: /usr/include/clipper/core/clipper_types.h:171:136: warning: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[2]' may be used uninitialized [-Wmaybe-uninitialized] 171 | template inline Vec3 operator +( const Vec3& v1, const Vec3 &v2 ) { return Vec3( v1[0]+v2[0], v1[1]+v2[1], v1[2]+v2[2]); } | ~~~~~^~~~ trace.cc: In member function 'void coot::trace::move_seeds_close_to_origin(std::vector*) const': trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c dSFMT.c -fPIC -DPIC -o .libs/dSFMT.o In file included from identify-protein.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from new-residue-by-3-phi-psi.cc:29: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from libres-tracer.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from rama-rsr-extend-fragments.cc:28: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': side-chain-densities.cc:2408:64: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2408 | std::pair mi = s.median_and_iqr(); | ^ In file included from libres-tracer.cc:46: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libres-tracer.cc: In lambda function: libres-tracer.cc:1932:77: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1932 | return std::make_pair(sum_forward, sum_backward); | ^ In file included from rama-rsr-extend-fragments.cc:32: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/string:51, from /usr/include/c++/14/stdexcept:39, from ../coot-utils/coot-coord-utils.hh:26, from new-residue-by-3-phi-psi.cc:28: In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t<((bool)std::__and_, std::is_move_assignable<_T2> >::value), std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t& coot::new_residue_by_3_phi_psi::connecting_atoms_t::operator=(coot::new_residue_by_3_phi_psi::connecting_atoms_t&&)' at new-residue-by-3-phi-psi.hh:54:13, inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const' at new-residue-by-3-phi-psi.cc:127:80: /usr/include/c++/14/bits/stl_pair.h:938:9: warning: '.coot::new_residue_by_3_phi_psi::connecting_atoms_t::upstream_C.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 938 | second = std::forward(__p.second); | ^~~~~~ new-residue-by-3-phi-psi.cc: In member function 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const': new-residue-by-3-phi-psi.cc:127:80: note: '' declared here 127 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ In member function 'std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::__conditional_t<((bool)std::__and_, std::is_move_assignable<_T2> >::value), std::pair<_T1, _T2>&&, std::__nonesuch&&>) [with _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t& coot::new_residue_by_3_phi_psi::connecting_atoms_t::operator=(coot::new_residue_by_3_phi_psi::connecting_atoms_t&&)' at new-residue-by-3-phi-psi.hh:54:13, inlined from 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const' at new-residue-by-3-phi-psi.cc:127:80: /usr/include/c++/14/bits/stl_pair.h:938:9: warning: '.coot::new_residue_by_3_phi_psi::connecting_atoms_t::downstream_N.std::pair::second' may be used uninitialized [-Wmaybe-uninitialized] 938 | second = std::forward(__p.second); | ^~~~~~ new-residue-by-3-phi-psi.cc: In member function 'coot::new_residue_by_3_phi_psi::connecting_atoms_t coot::new_residue_by_3_phi_psi::get_connecting_residue_atoms() const': new-residue-by-3-phi-psi.cc:127:80: note: '' declared here 127 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ libres-tracer.cc: In function 'std::vector > make_spin_scored_pairs(const std::vector >&, unsigned int, const clipper::Xmap&, mmdb::Manager*, mmdb::Atom**, int)': libres-tracer.cc:496:67: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 496 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ libres-tracer.cc: In lambda function: libres-tracer.cc:1940:89: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1940 | std::pair score = get_tree_scores(tree); | ^ side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': side-chain-densities.cc:1293:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~ side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': side-chain-densities.cc:2302:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2302 | coot::side_chain_densities::combine_directory(const std::string &rot_dir, int n_steps, | ^~~~ /bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-ligand.la -rpath /usr/lib/aarch64-linux-gnu ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo joining-residues.lo ligand-score-card.lo side-chain-densities.lo tube-finder.lo smith-waterman.lo side-chain.lo refine-isolated-chain.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/trace.o .libs/trace-2.o .libs/multi-peptide.o .libs/ligands-db.o .libs/joining-residues.o .libs/ligand-score-card.o .libs/side-chain-densities.o .libs/tube-finder.o .libs/smith-waterman.o .libs/side-chain.o .libs/refine-isolated-chain.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../analysis/.libs/libcoot-analysis.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-ligand.so.0 -o .libs/libcoot-ligand.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-ligand.so.0" && ln -s "libcoot-ligand.so.0.0.0" "libcoot-ligand.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-ligand.so" && ln -s "libcoot-ligand.so.0.0.0" "libcoot-ligand.so") libtool: link: ( cd ".libs" && rm -f "libcoot-ligand.la" && ln -s "../libcoot-ligand.la" "libcoot-ligand.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-findligand-bin find-ligand.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../db-main/libcoot-db-main.la ../cootaneer/libcootaneer.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm /bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-findwaters-bin find-waters.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../ccp4mg-utils/libccp4mg-utils.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm /bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-make-ligands-db make-ligands-db.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../cootaneer/libcootaneer.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams /bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-identify-protein-bin identify-protein.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libres-tracer.cc: In function 'std::vector > make_spin_scored_pairs(const std::vector >&, unsigned int, const clipper::Xmap&, mmdb::Manager*, mmdb::Atom**, int)': libres-tracer.cc:481:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 481 | make_spin_scored_pairs(const std::vector > &atom_pairs_within_distance, | ^~~~~~~~~~~~~~~~~~~~~~ libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-identify-protein-bin identify-protein.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-findligand-bin find-ligand.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../db-main/.libs/libcoot-db-main.so ../cootaneer/.libs/libcootaneer.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-make-ligands-db make-ligands-db.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../cootaneer/.libs/libcootaneer.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-findwaters-bin find-waters.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-res-tracer.la -rpath /usr/lib/aarch64-linux-gnu libres-tracer.lo rama-rsr-extend-fragments.lo new-residue-by-3-phi-psi.lo dSFMT.lo libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libres-tracer.o .libs/rama-rsr-extend-fragments.o .libs/new-residue-by-3-phi-psi.o .libs/dSFMT.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-res-tracer.so.0 -o .libs/libcoot-res-tracer.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-res-tracer.so.0" && ln -s "libcoot-res-tracer.so.0.0.0" "libcoot-res-tracer.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-res-tracer.so" && ln -s "libcoot-res-tracer.so.0.0.0" "libcoot-res-tracer.so") libtool: link: ( cd ".libs" && rm -f "libcoot-res-tracer.la" && ln -s "../libcoot-res-tracer.la" "libcoot-res-tracer.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' Making all in coords make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Bond_lines.lo Bond_lines.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Cartesian.lo Cartesian.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cos-sin.lo cos-sin.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phenix-geo-bonds.lo phenix-geo-bonds.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mmdb-extras.lo mmdb-extras.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o utils.lo utils.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mmdb.lo mmdb.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mmdb-crystal.lo mmdb-crystal.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Bond_lines_ext.lo Bond_lines_ext.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-close.lo coot-close.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 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-DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer-markup.cc -fPIC -DPIC -o .libs/rotamer-markup.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o loop-path.lo loop-path.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c loop-path.cc -fPIC -DPIC -o .libs/loop-path.o In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from mmdb-crystal.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from rotamer-markup.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from phenix-geo.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from mmdb-crystal.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-plot-phi-psi.lo rama-plot-phi-psi.cc In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from mmdb-extras.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from Bond_lines.cc:36: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, from phenix-geo-bonds.cc:25: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o In file included from Bond_lines.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi-prob.lo phi-psi-prob.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi-prob.cc -fPIC -DPIC -o .libs/phi-psi-prob.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ramachandran-validation.lo ramachandran-validation.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ramachandran-validation.cc -fPIC -DPIC -o .libs/ramachandran-validation.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from mmdb.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from mmdb.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coords.la -rpath /usr/lib/aarch64-linux-gnu Bond_lines.lo Cartesian.lo cos-sin.lo phenix-geo-bonds.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo rotamer-markup.lo loop-path.lo rama-plot-phi-psi.lo phi-psi-prob.lo ramachandran-validation.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../cootaneer/libcootaneer.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/phenix-geo-bonds.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/phenix-geo.o .libs/rotamer-markup.o .libs/loop-path.o .libs/rama-plot-phi-psi.o .libs/phi-psi-prob.o .libs/ramachandran-validation.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../ligand/.libs/libcoot-ligand.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../cootaneer/.libs/libcootaneer.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-coords.so.0 -o .libs/libcoot-coords.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-coords.so.0" && ln -s "libcoot-coords.so.0.0.0" "libcoot-coords.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coords.so" && ln -s "libcoot-coords.so.0.0.0" "libcoot-coords.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coords.la" && ln -s "../libcoot-coords.la" "libcoot-coords.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' Making all in density-contour make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Vectors.lo Vectors.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CIsoSurface.lo CIsoSurface.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o density-contour-triangles.lo density-contour-triangles.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o occlusion.lo occlusion.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gaussian-surface.lo gaussian-surface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CIsoSurface.cpp -fPIC -DPIC -o .libs/CIsoSurface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Vectors.cpp -fPIC -DPIC -o .libs/Vectors.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gaussian-surface.cc -fPIC -DPIC -o .libs/gaussian-surface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c density-contour-triangles.cc -fPIC -DPIC -o .libs/density-contour-triangles.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c occlusion.cc -fPIC -DPIC -o .libs/occlusion.o In file included from CIsoSurface.cpp:1244: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from density-contour-triangles.cc:155: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from gaussian-surface.cc:36: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ CIsoSurface.cpp: In member function 'coot::CartesianPairInfo CIsoSurface::GenerateSurface_from_NXmap(const clipper::NXmap&, T, float, coot::Cartesian, int) [with T = float]': CIsoSurface.cpp:786:24: warning: 'grid_min' may be used uninitialized [-Wmaybe-uninitialized] 786 | clipper::Grid_range grid(grid_min, grid_max); | ^~~~ In file included from ../coords/Cartesian.h:31, from CIsoSurface.h:44, from CIsoSurface.cpp:55: /usr/include/clipper/core/coords.h:590:5: note: by argument 2 of type 'const clipper::Coord_grid&' to 'clipper::Grid_range::Grid_range(const clipper::Coord_grid&, const clipper::Coord_grid&)' declared here 590 | Grid_range( const Coord_grid& min, const Coord_grid& max ); | ^~~~~~~~~~ CIsoSurface.cpp:784:24: note: 'grid_min' declared here 784 | clipper::Coord_grid grid_min; | ^~~~~~~~ CIsoSurface.cpp:786:24: warning: 'grid_max' may be used uninitialized [-Wmaybe-uninitialized] 786 | clipper::Grid_range grid(grid_min, grid_max); | ^~~~ /usr/include/clipper/core/coords.h:590:5: note: by argument 3 of type 'const clipper::Coord_grid&' to 'clipper::Grid_range::Grid_range(const clipper::Coord_grid&, const clipper::Coord_grid&)' declared here 590 | Grid_range( const Coord_grid& min, const Coord_grid& max ); | ^~~~~~~~~~ CIsoSurface.cpp:785:24: note: 'grid_max' declared here 785 | clipper::Coord_grid grid_max; | ^~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-isosurface.la -rpath /usr/lib/aarch64-linux-gnu Vectors.lo CIsoSurface.lo density-contour-triangles.lo occlusion.lo gaussian-surface.lo ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o .libs/occlusion.o .libs/gaussian-surface.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs ../coords/.libs/libcoot-coords.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-isosurface.so.0 -o .libs/libcoot-isosurface.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-isosurface.so.0" && ln -s "libcoot-isosurface.so.0.0.0" "libcoot-isosurface.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-isosurface.so" && ln -s "libcoot-isosurface.so.0.0.0" "libcoot-isosurface.so") libtool: link: ( cd ".libs" && rm -f "libcoot-isosurface.la" && ln -s "../libcoot-isosurface.la" "libcoot-isosurface.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' Making all in skeleton make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dm-utils.lo dm-utils.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphical_skel.lo graphical_skel.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o BuildCas.lo BuildCas.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dm-utils.cc -fPIC -DPIC -o .libs/dm-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BuildCas.cc -fPIC -DPIC -o .libs/BuildCas.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" 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-Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs ../angles/.libs/libcoot-AngleInfo.so ../ideal/.libs/libcoot-ideal.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-skeleton.so.0 -o .libs/libcoot-skeleton.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-skeleton.so.0" && ln -s "libcoot-skeleton.so.0.0.0" "libcoot-skeleton.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-skeleton.so" && ln -s "libcoot-skeleton.so.0.0.0" "libcoot-skeleton.so") libtool: link: ( cd ".libs" && rm -f "libcoot-skeleton.la" && ln -s "../libcoot-skeleton.la" "libcoot-skeleton.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' Making all in high-res make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-atom-graph.cc -fPIC -DPIC -o .libs/coot-atom-graph.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-distortions.cc -fPIC -DPIC -o .libs/residue-distortions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-assignment.cc -fPIC -DPIC -o .libs/sequence-assignment.o In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from residue-distortions.cc:21: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from coot-atom-graph.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from high-res.cc:24: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from sequence-assignment.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from high-res.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-high-res.la -rpath /usr/lib/aarch64-linux-gnu high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../coot-utils/.libs/libcoot-coord-utils.so ../coords/.libs/libcoot-coords.so ../ligand/.libs/libcoot-ligand.so ../coot-utils/.libs/libcoot-map-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-high-res.so.0 -o .libs/libcoot-high-res.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-high-res.so.0" && ln -s "libcoot-high-res.so.0.0.0" "libcoot-high-res.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-high-res.so" && ln -s "libcoot-high-res.so.0.0.0" "libcoot-high-res.so") libtool: link: ( cd ".libs" && rm -f "libcoot-high-res.la" && ln -s "../libcoot-high-res.la" "libcoot-high-res.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' Making all in build make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/build' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CalphaBuild.lo CalphaBuild.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CalphaBuild.cc -fPIC -DPIC -o .libs/CalphaBuild.o /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-cabuild.la -rpath /usr/lib/aarch64-linux-gnu CalphaBuild.lo ../angles/libcoot-AngleInfo.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/CalphaBuild.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/angles/.libs ../angles/.libs/libcoot-AngleInfo.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 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'/build/reproducible-path/coot-1.1.09+dfsg/build' Making all in MoleculesToTriangles make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making all in CXXSurface make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereTriangle.cpp -fPIC -DPIC -o .libs/CXXSphereTriangle.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereTriangleEdge.cpp -fPIC -DPIC -o .libs/CXXSphereTriangleEdge.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurface.cpp -fPIC -DPIC -o .libs/CXXSurface.o CXXFortranFile.cpp: In member function 'size_t CXXFortranFile::getFortranData(char*, size_t, size_t, int)': CXXFortranFile.cpp:192:20: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 192 | for (int i=0; i() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXTorusNode.lo CXXTorusNode.cpp In file included from CXXSurfaceVertex.h:26, from CXXSurfaceVertex.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ In file included from CXXSurfaceVertex.h:26, from CXXCircle.cpp:26: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXSphereElement.cpp:26: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXCircleNode.cpp:24: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXCoord.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXTriangle.lo CXXTriangle.cpp In file included from CXXSurfaceVertex.h:26, from CXXTorusElement.cpp:26: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSphereNode.h:30, from CXXSphereNode.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXNewHood.cpp:27: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXTorusNode.cpp -fPIC -DPIC -o .libs/CXXTorusNode.o In file included from CXXSphereTriangle.h:28, from CXXSphereTriangle.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXQADSurface.lo CXXQADSurface.cpp CXXSphereElement.cpp: In copy constructor 'CXXSphereElement::CXXSphereElement(const CXXSphereElement&)': CXXSphereElement.cpp:279:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 279 | for (int i=0; i&)': CXXSphereElement.cpp:673:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 673 | for (int i=0; i() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXTriangle.cpp -fPIC -DPIC -o .libs/CXXTriangle.o CXXCircleNode.cpp: In static member function 'static int CXXCircleNode::probeContacts(std::vector&, double, std::map >&)': CXXCircleNode.cpp:176:59: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<__gnu_cxx::__normal_iterator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 176 | for (int iCentralProbe = 0; iCentralProbe < centralBin.size(); iCentralProbe++){ | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ CXXSurface.cpp: In member function 'int CXXSurface::readGraspFile(std::string)': CXXSurface.cpp:155:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 155 | for (int i=0; i&, mmdb::Manager*, int)': CXXSurface.cpp:497:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 497 | for (int i=0; i< nVerts; i++){ | ~^~~~~~~~ CXXSurface.cpp: In member function 'size_t CXXSurface::updateWithVectorData(size_t, std::string, size_t, double*)': CXXSurface.cpp:585:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 585 | if (int(vertices.size()) < start + count){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ CXXSurface.cpp: In member function 'size_t CXXSurface::updateWithPointerData(size_t, std::string, size_t, void**)': CXXSurface.cpp:599:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 599 | if (int(vertices.size()) < start + count){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXQADSurface.cpp -fPIC -DPIC -o .libs/CXXQADSurface.o CXXSurface.cpp: In member function 'size_t CXXSurface::setCoord(const std::string&, size_t, const CXXCoord&)': CXXSurface.cpp:817:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 817 | if (int(vertices.size()) <= iVertex){ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ CXXSurface.cpp: In member function 'int CXXSurface::getCoord(size_t, size_t, double*)': CXXSurface.cpp:950:14: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] 950 | if (type <= int(vectors.size())){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ CXXSurface.cpp: In member function 'void CXXSurface::compress(double)': CXXSurface.cpp:1013:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1013 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1015 | for (int j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1031 | for (int i=0; i() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSpace.lo CXXSpace.cpp In file included from CXXSurfaceVertex.h:26, from CXXQADSurfaceStaticData.cpp:24: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXTriangle.h:27, from CXXTriangle.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' CXXCreator.cpp:803:2: warning: #warning Compiling for OMP [-Wcpp] 803 | #warning Compiling for OMP | ^~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXFFTSolventMap.lo CXXFFTSolventMap.cpp In file included from CXXSurfaceVertex.h:26, from CXXQADSurface.cpp:24: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSpace.cpp -fPIC -DPIC -o .libs/CXXSpace.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXChargeTable.lo CXXChargeTable.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXFFTSolventMap.cpp -fPIC -DPIC -o .libs/CXXFFTSolventMap.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXException.lo CXXException.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXChargeTable.cpp -fPIC -DPIC -o .libs/CXXChargeTable.o In file included from CXXCreator.h:41, from CXXCreator.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXUtils.lo CXXUtils.cpp CXXFFTSolventMap.cpp: In constructor 'SolventMap::SolventMap(fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real)': CXXFFTSolventMap.cpp:32:25: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 32 | if (probeRadius < 0 | gridSpacing < 0) { | ~~~~~~~~~~~~^~~ CXXFFTSolventMap.cpp: In member function 'int SolventMap::convoluteSolidProbe(fftw_real, int, int, float)': CXXFFTSolventMap.cpp:361:22: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { | ~~~~~~~~~^~~~ CXXFFTSolventMap.cpp:361:59: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { | ~~~~~~~~~~~~~~~^~~~ CXXFFTSolventMap.cpp:361:72: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { | ~~~~~~^~~~ CXXFFTSolventMap.cpp: In member function 'int SolventMap::dumpXSlice(int, int, int)': CXXFFTSolventMap.cpp:743:21: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 743 | if (SliceNr > dim[0] | SliceNr < 1) { | ~~~~~~~~^~~~~~~~ CXXQADSurface.cpp: In member function 'int CXXQADSurface::contourMap(double)': CXXQADSurface.cpp:599:75: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 599 | iCompare >=compareStart && !iEquivalent; | ~~~~~~~~~^~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXException.cpp -fPIC -DPIC -o .libs/CXXException.o In file included from CXXSpace.h:25, from CXXSpace.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXUtils.cpp -fPIC -DPIC -o .libs/CXXUtils.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXBall.lo CXXBall.cpp CXXSpace.cpp: In constructor 'CXXSpace::CXXSpace(float, float, float, float, float, float, float, float)': CXXSpace.cpp:51:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 51 | if (chargeGrid == 0 | potentialGrid == 0 | dielGrid == 0) { | ~~~~~~~~~~~^~~~ CXXSpace.cpp:51:104: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 51 | if (chargeGrid == 0 | potentialGrid == 0 | dielGrid == 0) { | ~~~~~~~~~^~~~ CXXSpace.cpp: In member function 'double CXXSpace::getGridCharge(int, int, int)': CXXSpace.cpp:184:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:184:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:184:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:184:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:184:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 184 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getGridSolvationParameter(int, int, int)': CXXSpace.cpp:203:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:203:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:203:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:203:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:203:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 203 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getEpsilonKappaSq(int, int, int)': CXXSpace.cpp:222:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:222:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:222:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:222:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:222:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 222 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getPotential(int, int, int)': CXXSpace.cpp:240:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:240:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:240:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:240:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:240:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 240 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'double CXXSpace::getBoundaryMap(int, int, int)': CXXSpace.cpp:261:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:261:31: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~ CXXSpace.cpp:261:39: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:261:53: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp:261:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (i < 0 | j < 0 | k < 0 | i == dim[0] | j == dim[1] | k == dim[2]) { | ~~^~~~~~~~~ CXXSpace.cpp: In member function 'int CXXSpace::dumpSpaceSlice(int, int, int)': CXXSpace.cpp:507:23: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 507 | if (dimension > 2 | dimension < 0) { | ~~~~~~~~~~^~~ CXXSpace.cpp:531:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 531 | if (j == (dim[1]-1)) | ^~ CXXSpace.cpp:533:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 533 | break; | ^~~~~ CXXSpace.cpp:538:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 538 | if (j == (dim[1]-1)) | ^~ CXXSpace.cpp:541:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 541 | break; | ^~~~~ CXXSpace.cpp:578:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 578 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:581:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 581 | break; | ^~~~~ CXXSpace.cpp:586:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 586 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:590:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 590 | break; | ^~~~~ CXXSpace.cpp:620:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 620 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:623:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 623 | break; | ^~~~~ CXXSpace.cpp:628:57: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 628 | if (i == (dim[0]-1)) | ^~ CXXSpace.cpp:631:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 631 | break; | ^~~~~ CXXCreator.cpp: In member function 'int CXXCreator::distributeAtomCharge(CXXCoord, CXXCoord, CXXCoord, CXXCoord, int)': CXXCreator.cpp:261:28: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:261:78: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:289:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 289 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~~ CXXCreator.cpp:289:38: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 289 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~ CXXCreator.cpp:311:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 311 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:311:68: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 311 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp: In member function 'double CXXCreator::getGridVolumeOfAtom(CXXCoord, CXXCoord, CXXCoord, CXXCoord, int)': CXXCreator.cpp:389:28: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 389 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:389:78: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 389 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { | ~~~~~~~~~~~~~~~~~~~^~~ CXXCreator.cpp:414:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 414 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~~ CXXCreator.cpp:414:38: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 414 | if (iMin <= 0 | jMin <= 0 | kMin < 0) { | ~~~~~^~~ CXXCreator.cpp:433:14: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 433 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:433:68: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 433 | if (iMax >= space->getDimI() | jMin >= space->getDimJ() | kMin >= space->getDimK()) { | ~~~~~^~~~~~~~~~~~~~~~~~~ CXXCreator.cpp: In member function 'int CXXCreator::evolve(int, double)': CXXCreator.cpp:789:34: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 789 | for (size_t i = 0; i < space->getDimI(); i++) { | ~~^~~~~~~~~~~~~~~~~~ CXXCreator.cpp:793:35: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 793 | for (size_t j=0; jgetDimJ(); j++) largestChangeOfRow[j]=-1e30; | ~^~~~~~~~~~~~~~~~~ CXXCreator.cpp:796:35: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 796 | for (size_t j=0; jgetDimJ(); j++) largestPotentialOfRow[j]=-1e30; | ~^~~~~~~~~~~~~~~~~ CXXCreator.cpp:804:38: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 804 | for (size_t j = 0; j < passableSpace->getDimJ(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:809:42: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 809 | for (size_t k = 0; k < passableSpace->getDimK(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ CXXCreator.cpp:812:41: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 812 | if (((i+j+k)%2) == (n%2)) { | ~~~~~~~~~~~~^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXBall.cpp -fPIC -DPIC -o .libs/CXXBall.o CXXBall.cpp:87:2: warning: #warning Compiling for OMP [-Wcpp] 87 | #warning Compiling for OMP | ^~~~~~~ CXXBall.cpp:157:2: warning: #warning Compiling for OMP [-Wcpp] 157 | #warning Compiling for OMP | ^~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSurfaceMaker.lo CXXSurfaceMaker.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurfaceMaker.cpp -fPIC -DPIC -o .libs/CXXSurfaceMaker.o CXXSurfaceMaker.cpp:431:2: warning: #warning Compiling for OMP [-Wcpp] 431 | #warning Compiling for OMP | ^~~~~~~ CXXSurfaceMaker.cpp:569:2: warning: #warning Compiling for OMP [-Wcpp] 569 | #warning Compiling for OMP | ^~~~~~~ In file included from CXXSurfaceVertex.h:26, from CXXBall.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXSurfaceMaker.cpp:31: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ CXXCoord.h:39:16: note: remove the '< >' CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ CXXCoord.h:49:16: note: remove the '< >' CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' CXXBall.cpp: In static member function 'static int CXXBall::triangulateBalls(std::vector&, std::vector&, double, CXXSurfaceMaker*, int)': CXXBall.cpp:88:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 88 | for (int i=0; i< nBalls; i++){ | ~^~~~~~~~ CXXBall.cpp:93:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 93 | if (!(i%100) || i==nBalls-1) { | ~^~~~~~~~~~ CXXBall.cpp:129:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 129 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 160 | for (int i=0; i&, std::vector&, std::map >&)': CXXBall.cpp:295:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 295 | for (int iBall=0; iBall< balls.size(); iBall++){ | ~~~~~^~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'int CXXSurfaceMaker::calculateVDWFromAtoms(mmdb::Manager*, int, int, double, double, double, bool)': CXXSurfaceMaker.cpp:193:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 193 | for (int i = 0; i < vdwBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:196:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 196 | delete static_cast(vdwBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:198:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 198 | for (int i = 0; i < contextBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:204:17: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 204 | delete static_cast(contextBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'int CXXSurfaceMaker::calculateAccessibleFromAtoms(mmdb::Manager*, int, int, double, double, double, bool)': CXXSurfaceMaker.cpp:255:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 255 | for (int i = 0; i < vdwBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:258:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 258 | delete static_cast(vdwBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:260:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 260 | for (int i = 0; i < contextBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:266:17: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 266 | delete static_cast(contextBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'int CXXSurfaceMaker::calculateFromAtoms(mmdb::Manager*, int, int, double, double, double, bool)': CXXSurfaceMaker.cpp:509:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 509 | for (int i = 0; i < vdwBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:512:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 512 | delete static_cast(vdwBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:514:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 514 | for (int i = 0; i < contextBallPntrs.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:517:13: warning: deleting object of polymorphic class type 'CXXAtomBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 517 | delete static_cast(contextBallPntrs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:520:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 520 | for (int i = 0; i < reentrantProbes.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp:522:9: warning: deleting object of polymorphic class type 'CXXReentrantProbeBall' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 522 | delete static_cast(reentrantProbes[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CXXSurfaceMaker.cpp: In member function 'SurfaceParameters CXXSurfaceMaker::measuredProperties()': CXXSurfaceMaker.cpp:571:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 571 | for (int iChildSurface = 0; iChildSurface < childSurfaces.size(); iChildSurface++) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libMoleculesToTrianglesCXXSurface.la -rpath /usr/lib/aarch64-linux-gnu CXXCircle.lo CXXCircleNode.lo CXXCoord.lo CXXFortranFile.lo CXXNewHood.lo CXXSphereElement.lo CXXSphereNode.lo CXXSphereTriangle.lo CXXSphereTriangleEdge.lo CXXSurface.lo CXXSurfaceVertex.lo CXXTorusElement.lo CXXTorusNode.lo CXXTriangle.lo CXXQADSurface.lo CXXQADSurfaceStaticData.lo CXXCreator.lo CXXSpace.lo CXXFFTSolventMap.lo CXXChargeTable.lo CXXException.lo CXXUtils.lo CXXBall.lo CXXSurfaceMaker.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsrfftw -lsfftw -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/CXXCircle.o .libs/CXXCircleNode.o .libs/CXXCoord.o .libs/CXXFortranFile.o .libs/CXXNewHood.o .libs/CXXSphereElement.o .libs/CXXSphereNode.o .libs/CXXSphereTriangle.o .libs/CXXSphereTriangleEdge.o .libs/CXXSurface.o .libs/CXXSurfaceVertex.o .libs/CXXTorusElement.o .libs/CXXTorusNode.o .libs/CXXTriangle.o .libs/CXXQADSurface.o .libs/CXXQADSurfaceStaticData.o .libs/CXXCreator.o .libs/CXXSpace.o .libs/CXXFFTSolventMap.o .libs/CXXChargeTable.o .libs/CXXException.o .libs/CXXUtils.o .libs/CXXBall.o .libs/CXXSurfaceMaker.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lsrfftw -lsfftw -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXSurface.so.0 -o .libs/libMoleculesToTrianglesCXXSurface.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.so.0" && ln -s "libMoleculesToTrianglesCXXSurface.so.0.0.0" "libMoleculesToTrianglesCXXSurface.so.0") libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.so" && ln -s "libMoleculesToTrianglesCXXSurface.so.0.0.0" "libMoleculesToTrianglesCXXSurface.so") libtool: link: ( cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.la" && ln -s "../libMoleculesToTrianglesCXXSurface.la" "libMoleculesToTrianglesCXXSurface.la" ) make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' Making all in CXXClasses make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo `test -f 'AtomPropertyRampColorRule.cpp' || echo './'`AtomPropertyRampColorRule.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo `test -f 'DirectedPositionedEntity.cpp' || echo './'`DirectedPositionedEntity.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Representation.lo `test -f 'Representation.cpp' || echo './'`Representation.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo `test -f 'BallsPrimitive.cpp' || echo './'`BallsPrimitive.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo `test -f 'DiscreteSegment.cpp' || echo './'`DiscreteSegment.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo `test -f 'RepresentationInstance.cpp' || echo './'`RepresentationInstance.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo `test -f 'BondsPrimitive.cpp' || echo './'`BondsPrimitive.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo `test -f 'DisplayPrimitive.cpp' || echo './'`DisplayPrimitive.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo `test -f 'RotatedTranslatedScaledEntity.cpp' || echo './'`RotatedTranslatedScaledEntity.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo `test -f 'BoxSectionPrimitive.cpp' || echo './'`BoxSectionPrimitive.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Light.lo `test -f 'Light.cpp' || echo './'`Light.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo `test -f 'CXXMatrix.cpp' || echo './'`CXXMatrix.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DirectedPositionedEntity.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Representation.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BallsPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c RepresentationInstance.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DisplayPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c RotatedTranslatedScaledEntity.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DiscreteSegment.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BondsPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AtomPropertyRampColorRule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BoxSectionPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Light.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXMatrix.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o In file included from PositionedEntity.h:28, from DirectedPositionedEntity.h:28, from DirectedPositionedEntity.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from Representation.h:36, from Representation.cpp:33: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from BallsPrimitive.h:33, from BallsPrimitive.cpp:28: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from RotatedTranslatedScaledEntity.h:28, from RotatedTranslatedScaledEntity.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from ColorRule.h:29, from AtomPropertyRampColorRule.h:27, from AtomPropertyRampColorRule.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from CXXMatrix.h:28, from CXXMatrix.cpp:24: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd In file included from DisplayPrimitive.h:32, from DisplayPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from CylindersPrimitive.h:29, from BoxSectionPrimitive.h:31, from BoxSectionPrimitive.cpp:32: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd In file included from RotatedTranslatedScaledEntity.h:28, from Light.h:29, from Light.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from RotatedTranslatedScaledEntity.h:28, from RepresentationInstance.h:32, from RepresentationInstance.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from NRStuff.h:31, from DiscreteSegment.h:26, from DiscreteSegment.cpp:26: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from BondsPrimitive.h:28, from BondsPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo `test -f 'MolecularRepresentation.cpp' || echo './'`MolecularRepresentation.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ In file included from oglPolyhedron.h:29, from SpherePrimitive.h:30, from Representation.cpp:36: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from oglPolyhedron.h:29, from BallsPrimitive.cpp:30: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MolecularRepresentation.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo `test -f 'SecondaryColorScheme.cpp' || echo './'`SecondaryColorScheme.cpp /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo `test -f 'MyMolecule.cpp' || echo './'`MyMolecule.cpp BallsPrimitive.cpp: In member function 'virtual void BallsPrimitive::generateArrays()': BallsPrimitive.cpp:96:39: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 96 | for (int iVertex = 0; iVertex < ((Polyhedron *)poly)->nVertices(); iVertex++){ | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BallsPrimitive.cpp:110:35: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 110 | for (int iFace = 0; iFace < ((Polyhedron *)poly)->nFaces(); iFace++){ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ BoxSectionPrimitive.cpp: In member function 'virtual void BoxSectionPrimitive::generateArrays()': BoxSectionPrimitive.cpp:72:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 72 | for (int i=0; i< points.size(); i++){ | ~^~~~~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' BoxSectionPrimitive.cpp:105:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 105 | for (int i=0; i< points.size()-1; i++){ | ~^~~~~~~~~~~~~~~~~ DiscreteSegment.cpp: In member function 'void DiscreteSegment::evaluateNormals()': DiscreteSegment.cpp:44:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 44 | for (int i=1; i<(calphas.size()-1); i++){ | ~^~~~~~~~~~~~~~~~~~~ DiscreteSegment.cpp: In member function 'void DiscreteSegment::smoothBetas()': DiscreteSegment.cpp:83:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 83 | for (int iCalpha=0; iCalpha::size_type' {aka 'long unsigned int'} [-Wsign-compare] 88 | && iCalpha+nInStrand < calphas.size()){ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ DiscreteSegment.cpp:98:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 98 | if (iCalpha+nInStrand < calphas.size()){ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ DiscreteSegment.cpp: In member function 'void DiscreteSegment::evaluateSplines()': DiscreteSegment.cpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 135 | for (int i=0; i() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Polyhedron.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o In file included from DisplayPrimitive.h:32, from SpherePrimitive.h:29, from SpherePrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo `test -f 'PositionedEntity.cpp' || echo './'`PositionedEntity.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SticksPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo `test -f 'SurfacePrimitive.cpp' || echo './'`SurfacePrimitive.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CompoundSelection.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o In file included from ColorRule.h:29, from ColorScheme.h:32, from ColorScheme.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from MyMolecule.h:28, from CompoundSelection.h:35, from CompoundSelection.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from SticksPrimitive.h:31, from SticksPrimitive.cpp:28: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c PositionedEntity.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o In file included from MolecularRepresentation.cpp:28: DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SurfacePrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from SurfacePrimitive.h:28, from SurfacePrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from MyMolecule.cpp:36: DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i, int>&)' was hidden [-Woverloaded-virtual=] 95 | virtual FCXXCoord colorForAtom(const mmdb::Atom* atom, std::map, int> &handles){ | ^~~~~~~~~~~~ SecondaryColorScheme.h:52:23: note: by 'virtual FCXXCoord SecondaryColorScheme::colorForAtom(mmdb::Atom*)' 52 | virtual FCXXCoord colorForAtom(mmdb::Atom* atom){ | ^~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from oglPolyhedron.h:29, from SpherePrimitive.h:30: Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' CompoundSelection.cpp: In destructor 'CompoundSelection::~CompoundSelection()': CompoundSelection.cpp:36:13: warning: deleting object of polymorphic class type 'CompoundSelection' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 36 | delete p; | ^~~~~~~~ CompoundSelection.cpp:39:13: warning: deleting object of polymorphic class type 'MMDBStringPrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 39 | delete p; | ^~~~~~~~ CompoundSelection.cpp:42:13: warning: deleting object of polymorphic class type 'MMDBSecondaryTypePrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 42 | delete p; | ^~~~~~~~ CompoundSelection.cpp:45:13: warning: deleting object of polymorphic class type 'MMDBSubsetTypePrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 45 | delete p; | ^~~~~~~~ MolecularRepresentation.cpp: In member function 'int MolecularRepresentation::drawRibbon()': MolecularRepresentation.cpp:542:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 542 | for (int iSegment = 0; iSegment < segments.size(); iSegment++){ | ~~~~~~~~~^~~~~~~~~~~~~~~~~ MolecularRepresentation.cpp: In member function 'int MolecularRepresentation::drawCalphas()': MolecularRepresentation.cpp:740:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 740 | for (int iSegment = 0; iSegment < segments.size(); iSegment++){ | ~~~~~~~~~^~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo `test -f 'CylinderPoint.cpp' || echo './'`CylinderPoint.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Renderer.lo `test -f 'Renderer.cpp' || echo './'`Renderer.cpp ColorScheme.cpp: In static member function 'static std::shared_ptr ColorScheme::colorRampChainsScheme()': ColorScheme.cpp:61:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 61 | for (int i=0; i, SurfaceType, float, float)': SurfacePrimitive.cpp:145:42: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 145 | for (int iVertex = 0; iVertex() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from Polyhedron.h:32, from oglPolyhedron.h:29, from oglPolyhedron.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo `test -f 'MolecularRepresentationInstance.cpp' || echo './'`MolecularRepresentationInstance.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Quaternion.lo `test -f 'Quaternion.cpp' || echo './'`Quaternion.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MolecularRepresentationInstance.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Vector2.lo `test -f 'Vector2.cpp' || echo './'`Vector2.cpp CylindersPrimitive.cpp: In member function 'virtual void CylindersPrimitive::generateArrays()': CylindersPrimitive.cpp:85:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 85 | for (int i=0; i< points.size(); i++){ | ~^~~~~~~~~~~~~~~ CylindersPrimitive.cpp:113:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 113 | for (int i=0; i< points.size()-1; i++){ | ~^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Quaternion.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o In file included from MyMolecule.h:28, from MolecularRepresentation.h:32, from MolecularRepresentationInstance.h:30, from MolecularRepresentationInstance.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Vector2.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ oglPolyhedron.cpp: In member function 'virtual void oglPolyhedron::generateArrays()': oglPolyhedron.cpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 48 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 63 | for (int i=0; i() { | ^ /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DishyBase.lo `test -f 'DishyBase.cpp' || echo './'`DishyBase.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Vector3.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c lfit.c -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DishyBase.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo `test -f 'FlatFanPrimitive.cpp' || echo './'`FlatFanPrimitive.cpp In file included from DishyBase.h:31, from DishyBase.cpp:23: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c FlatFanPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from FlatFanPrimitive.h:29, from FlatFanPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' MyMolecule.cpp: In member function 'int MyMolecule::loadCoords(char*, int)': MyMolecule.cpp:92:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 8 bytes from a string of length 225 [-Wstringop-truncation] 92 | strncpy (field, tokenBuffer+30, 8); | ^ MyMolecule.cpp:94:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 8 bytes from a string of length 217 [-Wstringop-truncation] 94 | strncpy (field, tokenBuffer+38, 8); | ^ MyMolecule.cpp:96:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 8 bytes from a string of length 209 [-Wstringop-truncation] 96 | strncpy (field, tokenBuffer+46, 8); | ^ MyMolecule.cpp:99:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 6 bytes from a string of length 201 [-Wstringop-truncation] 99 | strncpy (field, tokenBuffer+54, 6); | ^ MyMolecule.cpp:101:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 6 bytes from a string of length 195 [-Wstringop-truncation] 101 | strncpy (field, tokenBuffer+60, 6); | ^ /bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libMoleculesToTrianglesCXXClasses.la -rpath /usr/lib/aarch64-linux-gnu libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-Representation.lo libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo libMoleculesToTrianglesCXXClasses_la-Light.lo libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo libMoleculesToTrianglesCXXClasses_la-ColorRule.lo libMoleculesToTrianglesCXXClasses_la-NRStuff.lo libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo libMoleculesToTrianglesCXXClasses_la-Renderer.lo libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-Quaternion.lo libMoleculesToTrianglesCXXClasses_la-Vector2.lo libMoleculesToTrianglesCXXClasses_la-Vector3.lo libMoleculesToTrianglesCXXClasses_la-lfit.lo libMoleculesToTrianglesCXXClasses_la-DishyBase.lo libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo ../../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o .libs/libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/.libs -L/usr/lib/aarch64-linux-gnu ../../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXClasses.so.0 -o .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.so.0" && ln -s "libMoleculesToTrianglesCXXClasses.so.0.0.0" "libMoleculesToTrianglesCXXClasses.so.0") libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.so" && ln -s "libMoleculesToTrianglesCXXClasses.so.0.0.0" "libMoleculesToTrianglesCXXClasses.so") libtool: link: ( cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.la" && ln -s "../libMoleculesToTrianglesCXXClasses.la" "libMoleculesToTrianglesCXXClasses.la" ) make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making all in pli make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-ligand-interactions.lo protein-ligand-interactions.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flev-annotations.lo flev-annotations.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pi-stacking.lo pi-stacking.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sdf-interface.lo sdf-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flev-annotations.cc -fPIC -DPIC -o .libs/flev-annotations.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-ligand-interactions.cc -fPIC -DPIC -o .libs/protein-ligand-interactions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pi-stacking.cc -fPIC -DPIC -o .libs/pi-stacking.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sdf-interface.cc -fPIC -DPIC -o .libs/sdf-interface.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from sdf-interface-for-export.hh:31, from sdf-interface.cc:49: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from pi-stacking.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from sdf-interface.cc:147: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from sdf-interface.cc:37: In constructor 'constexpr std::pair<_T1, _T2>::pair(_U1&&, _U2&&) [with _U1 = bool; _U2 = clipper::Coord_orth&; typename std::enable_if<(std::_PCC::_MoveConstructiblePair<_U1, _U2>() && std::_PCC::_ImplicitlyMoveConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)' at sdf-interface.cc:419:56: /usr/include/c++/14/bits/stl_pair.h:882:42: warning: 'v' may be used uninitialized [-Wmaybe-uninitialized] 882 | : first(std::forward<_U1>(__x)), second(std::forward<_U2>(__y)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sdf-interface.cc: In function 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)': sdf-interface.cc:409:24: note: 'v' declared here 409 | clipper::Coord_orth v; | ^ /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-pli.la -rpath /usr/lib/aarch64-linux-gnu protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo sdf-interface.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/protein-ligand-interactions.o .libs/flev-annotations.o .libs/pi-stacking.o .libs/sdf-interface.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs ../coot-utils/.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-pli.so.0 -o .libs/libcoot-pli.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-pli.so.0" && ln -s "libcoot-pli.so.0.0.0" "libcoot-pli.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-pli.so" && ln -s "libcoot-pli.so.0.0.0" "libcoot-pli.so") libtool: link: ( cd ".libs" && rm -f "libcoot-pli.la" && ln -s "../libcoot-pli.la" "libcoot-pli.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' Making all in greg-tests make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' Making all in python-tests make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' Making all in cootilus make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o nucleicacid_db.lo nucleicacid_db.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o nautilus-tools.lo nautilus-tools.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o nautilus-ss-find.lo nautilus-ss-find.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o nautilus-join.lo nautilus-join.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o nautilus-target.lo nautilus-target.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cootilus-build.lo cootilus-build.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nucleicacid_db.cpp -fPIC -DPIC -o .libs/nucleicacid_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-tools.cpp -fPIC -DPIC -o .libs/nautilus-tools.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-join.cpp -fPIC -DPIC -o .libs/nautilus-join.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-ss-find.cpp -fPIC -DPIC -o .libs/nautilus-ss-find.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-target.cpp -fPIC -DPIC -o .libs/nautilus-target.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cootilus-build.cpp -fPIC -DPIC -o .libs/cootilus-build.o /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootilus.la -rpath /usr/lib/aarch64-linux-gnu nucleicacid_db.lo nautilus-tools.lo nautilus-ss-find.lo nautilus-join.lo nautilus-target.lo cootilus-build.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/nucleicacid_db.o .libs/nautilus-tools.o .libs/nautilus-ss-find.o .libs/nautilus-join.o .libs/nautilus-target.o .libs/cootilus-build.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcootilus.so.0 -o .libs/libcootilus.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcootilus.so.0" && ln -s "libcootilus.so.0.0.0" "libcootilus.so.0") libtool: link: (cd ".libs" && rm -f "libcootilus.so" && ln -s "libcootilus.so.0.0.0" "libcootilus.so") libtool: link: ( cd ".libs" && rm -f "libcootilus.la" && ln -s "../libcootilus.la" "libcootilus.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' Making all in pyrogen make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mmff-restraints.lo mmff-restraints.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o py-restraints.lo py-restraints.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cairo-molecule.lo cairo-molecule.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom_types.lo atom_types.cc swig -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -o pyrogen-swig.cc -python -shadow -c++ ../pyrogen/pyrogen-swig.i /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o restraints.lo restraints.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o restraints-boost.lo restraints-boost.cc ../pyrogen/restraints.hh:57: Warning 389: operator[] ignored (consider using %extend) libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom_types.cc -fPIC -DPIC -o .libs/atom_types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmff-restraints.cc -fPIC -DPIC -o .libs/mmff-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c restraints.cc -fPIC -DPIC -o .libs/restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cairo-molecule.cc -fPIC -DPIC -o .libs/cairo-molecule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c py-restraints.cc -fPIC -DPIC -o .libs/py-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c restraints-boost.cc -fPIC -DPIC -o .libs/restraints-boost.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pyrogen-swig.lo pyrogen-swig.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pyrogen-swig.cc -fPIC -DPIC -o .libs/pyrogen-swig.o In file included from cairo-molecule.hh:34, from cairo-molecule.cc:27: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cairo-molecule.hh:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from atom_types.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from mmff-restraints.hh:27, from mmff-restraints.cc:23: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ ../lidia-core/lig-build.hh: In instantiation of 'std::pair lig_build::molecule_t::ligand_extents() const [with Ta = coot::cairo_atom_t; Tb = coot::cairo_bond_t]': cairo-molecule.cc:687:70: required from here 687 | std::pair ext = ligand_extents(); | ~~~~~~~~~~~~~~^~ ../lidia-core/lig-build.hh:1503:7: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1503 | ligand_extents() const { | ^~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from ../pyrogen/restraints-private.hh:33, from ../pyrogen/restraints.hh:39, from pyrogen-swig.cc:5383: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-private.hh:33, from restraints.hh:39, from restraints.cc:26: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from restraints.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-private.hh:33, from restraints.hh:39, from py-restraints.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../ideal/simple-restraint.hh:162, from restraints-boost.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from restraints.cc:34: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-boost.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot_py_restraints.so.0" && ln -s "libcoot_py_restraints.so.0.0.0" "libcoot_py_restraints.so.0") libtool: link: (cd ".libs" && rm -f "libcoot_py_restraints.so" && ln -s "libcoot_py_restraints.so.0.0.0" "libcoot_py_restraints.so") libtool: link: ( cd ".libs" && rm -f "libcoot_py_restraints.la" && ln -s "../libcoot_py_restraints.la" "libcoot_py_restraints.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/restraints-boost.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pyrogen/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs ./.libs/libcoot_py_restraints.so ../pli/.libs/libcoot-pli.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so ../lidia-core/.libs/libcoot-lidia-core.so -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,pyrogen_boost.so.0 -o .libs/pyrogen_boost.so.0.0.0 libtool: link: (cd ".libs" && rm -f "pyrogen_boost.so.0" && ln -s "pyrogen_boost.so.0.0.0" "pyrogen_boost.so.0") libtool: link: (cd ".libs" && rm -f "pyrogen_boost.so" && ln -s "pyrogen_boost.so.0.0.0" "pyrogen_boost.so") libtool: link: ( cd ".libs" && rm -f "pyrogen_boost.la" && ln -s "../pyrogen_boost.la" "pyrogen_boost.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints 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-Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot_py_restraints.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../analysis/.libs/libcoot-analysis.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse 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.libs/_pyrogen_swig.so.0.0.0 libtool: link: (cd ".libs" && rm -f "_pyrogen_swig.so.0" && ln -s "_pyrogen_swig.so.0.0.0" "_pyrogen_swig.so.0") libtool: link: (cd ".libs" && rm -f "_pyrogen_swig.so" && ln -s "_pyrogen_swig.so.0.0.0" "_pyrogen_swig.so") libtool: link: ( cd ".libs" && rm -f "_pyrogen_swig.la" && ln -s "../_pyrogen_swig.la" "_pyrogen_swig.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' Making all in data make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' Making all in rama-coeffs make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' Making all in cho-models make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory 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-DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c colour-functions.cc -fPIC -DPIC -o .libs/colour-functions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-modelling.cc -fPIC -DPIC -o .libs/molecules-container-modelling.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-validation.cc -fPIC -DPIC -o .libs/coot-molecule-validation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-a-dodec.cc -fPIC -DPIC -o .libs/make-a-dodec.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container.cc -fPIC -DPIC -o .libs/molecules-container.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-bonds.cc -fPIC -DPIC -o .libs/coot-molecule-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule.cc -fPIC -DPIC -o .libs/coot-molecule.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-ligand-fitting.lo molecules-container-ligand-fitting.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi-prob.lo phi-psi-prob.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-ligand-fitting.cc -fPIC -DPIC -o .libs/molecules-container-ligand-fitting.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi-prob.cc -fPIC -DPIC -o .libs/phi-psi-prob.o In file included from ../mini-mol/mini-mol.hh:29, from ../ligand/ligand.hh:32, from ../ligand/residue_by_phi_psi.hh:37, from add-terminal-residue.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-moltris.lo coot-molecule-moltris.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-replace-fragment.lo coot-molecule-replace-fragment.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-moltris.cc -fPIC -DPIC -o .libs/coot-molecule-moltris.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-backup.lo coot-molecule-backup.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-merge-molecules.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-replace-fragment.cc -fPIC -DPIC -o .libs/coot-molecule-replace-fragment.o In file included from coot-molecule-maps.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-validation.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-backup.cc -fPIC -DPIC -o .libs/coot-molecule-backup.o In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from coot-molecule.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from coot-molecule-moltris.cc:31: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 57 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 65 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd In file included from ../mini-mol/mini-mol.hh:29, from ../ligand/ligand.hh:32, from ../ligand/wligand.hh:25, from molecules-container-ligand-fitting.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-bonds.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../ideal/simple-restraint.hh:174, from coot-molecule.hh:47, from coot-molecule.cc:38: ../ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': ../ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-bonds-instanced.lo coot-molecule-bonds-instanced.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47, from coot-molecule-maps.cc:36: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-modelling.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-moltris.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-bonds-instanced.cc -fPIC -DPIC -o .libs/coot-molecule-bonds-instanced.o In file included from coot-molecule.hh:47, from molecules-container.hh:19, from molecules-container-ligand-fitting.cc:6: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule-backup.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-replace-fragment.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from coot-molecule.hh:47, from coot-molecule-backup.cc:29: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-bonds-instanced.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ molecules-container-ligand-fitting.cc: In member function 'float molecules_container_t::fit_to_map_by_random_jiggle_with_blur_using_cid(int, int, const std::string&, float, int, float)': molecules-container-ligand-fitting.cc:414:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 414 | auto p = coot::util::mean_and_variance(xmap); | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-mmrrcc.lo molecules-container-mmrrcc.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-mmrrcc.cc -fPIC -DPIC -o .libs/molecules-container-mmrrcc.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-gltf.lo molecules-container-gltf.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-gltf.cc -fPIC -DPIC -o .libs/molecules-container-gltf.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-refine.lo coot-molecule-refine.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-refine.cc -fPIC -DPIC -o .libs/coot-molecule-refine.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-superpose.lo molecules-container-superpose.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-superpose.cc -fPIC -DPIC -o .libs/molecules-container-superpose.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-gltf.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rigid-body-fit.lo rigid-body-fit.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o moorhen-h-bonds.lo moorhen-h-bonds.cc In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rigid-body-fit.cc -fPIC -DPIC -o .libs/rigid-body-fit.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c moorhen-h-bonds.cc -fPIC -DPIC -o .libs/moorhen-h-bonds.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-mmrrcc.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from rigid-body-fit.hh:7, from rigid-body-fit.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-bucca-ml-growing.lo molecules-container-bucca-ml-growing.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-superpose.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o instancing.lo instancing.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-bucca-ml-growing.cc -fPIC -DPIC -o .libs/molecules-container-bucca-ml-growing.o In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-refine.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c instancing.cc -fPIC -DPIC -o .libs/instancing.o In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-maps.lo molecules-container-maps.cc In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-maps.cc -fPIC -DPIC -o .libs/molecules-container-maps.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-change-chain-id.lo coot-molecule-change-chain-id.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from moorhen-h-bonds.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o blender-mesh.lo blender-mesh.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-change-chain-id.cc -fPIC -DPIC -o .libs/coot-molecule-change-chain-id.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-blender.lo coot-molecule-blender.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c blender-mesh.cc -fPIC -DPIC -o .libs/blender-mesh.o In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-blender.cc -fPIC -DPIC -o .libs/coot-molecule-blender.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-bucca-ml-growing.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-maps.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-blender.lo molecules-container-blender.cc In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-blender.cc -fPIC -DPIC -o .libs/molecules-container-blender.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ swig -o wrap-coot-api.cc -python -c++ coot-headless-api.i In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-blender.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ molecules-container.hh:953: Warning 325: Nested class not currently supported (auto_read_mtz_info_t ignored) molecules-container.hh:1042: Warning 325: Nested class not currently supported (r_factor_stats ignored) molecules-container.hh:1709: Warning 325: Nested class not currently supported (fit_ligand_info_t ignored) molecules-container.hh:1824: Warning 325: Nested class not currently supported (ltj_stats_t ignored) In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from coot-molecule-change-chain-id.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o _coot_headless_api_la-molecules-container-swig.lo `test -f 'molecules-container-swig.cc' || echo './'`molecules-container-swig.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o _coot_headless_api_la-wrap-coot-api.lo `test -f 'wrap-coot-api.cc' || echo './'`wrap-coot-api.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-swig.cc -fPIC -DPIC -o .libs/_coot_headless_api_la-molecules-container-swig.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c wrap-coot-api.cc -fPIC -DPIC -o .libs/_coot_headless_api_la-wrap-coot-api.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-blender.cc:3: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from wrap-coot-api.cc:3435: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, from molecules-container-swig.cc:6: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../ligand/libcoot-ligand.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../analysis/libcoot-analysis.la ../density-contour/libcoot-isosurface.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -Wl,-z,relro -o libcoot-api.la -rpath /usr/lib/aarch64-linux-gnu coot-molecule.lo coot-colour.lo add-terminal-residue.lo rama-plot-phi-psi.lo colour-functions.lo coot-molecule-maps.lo coot-molecule-merge-molecules.lo coot-molecule-bonds.lo coot-molecule-validation.lo molecules-container-modelling.lo molecules-container.lo make-a-dodec.lo molecules-container-ligand-fitting.lo phi-psi-prob.lo coot-molecule-moltris.lo coot-molecule-replace-fragment.lo coot-molecule-backup.lo coot-molecule-bonds-instanced.lo molecules-container-mmrrcc.lo molecules-container-gltf.lo coot-molecule-refine.lo molecules-container-superpose.lo rigid-body-fit.lo moorhen-h-bonds.lo molecules-container-bucca-ml-growing.lo instancing.lo molecules-container-maps.lo coot-molecule-change-chain-id.lo blender-mesh.lo coot-molecule-blender.lo molecules-container-blender.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-molecule.o .libs/coot-colour.o .libs/add-terminal-residue.o .libs/rama-plot-phi-psi.o .libs/colour-functions.o .libs/coot-molecule-maps.o .libs/coot-molecule-merge-molecules.o .libs/coot-molecule-bonds.o .libs/coot-molecule-validation.o .libs/molecules-container-modelling.o .libs/molecules-container.o .libs/make-a-dodec.o .libs/molecules-container-ligand-fitting.o .libs/phi-psi-prob.o .libs/coot-molecule-moltris.o .libs/coot-molecule-replace-fragment.o .libs/coot-molecule-backup.o .libs/coot-molecule-bonds-instanced.o .libs/molecules-container-mmrrcc.o .libs/molecules-container-gltf.o .libs/coot-molecule-refine.o .libs/molecules-container-superpose.o .libs/rigid-body-fit.o .libs/moorhen-h-bonds.o .libs/molecules-container-bucca-ml-growing.o .libs/instancing.o .libs/molecules-container-maps.o .libs/coot-molecule-change-chain-id.o .libs/blender-mesh.o .libs/coot-molecule-blender.o .libs/molecules-container-blender.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/density-contour/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../MoleculesToTriangles/CXXClasses/.libs/libMoleculesToTrianglesCXXClasses.so ../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so ../ligand/.libs/libcoot-ligand.so ../pli/.libs/libcoot-pli.so ../ideal/.libs/libcoot-ideal.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../analysis/.libs/libcoot-analysis.so ../density-contour/.libs/libcoot-isosurface.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coords/.libs/libcoot-coords.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-api.so.0 -o .libs/libcoot-api.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-api.so.0" && ln -s "libcoot-api.so.0.0.0" "libcoot-api.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-api.so" && ln -s "libcoot-api.so.0.0.0" "libcoot-api.so") libtool: link: ( cd ".libs" && rm -f "libcoot-api.la" && ln -s "../libcoot-api.la" "libcoot-api.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined -Wl,-z,relro -o _coot_headless_api.la -rpath /usr/lib/python3/dist-packages _coot_headless_api_la-wrap-coot-api.lo _coot_headless_api_la-molecules-container-swig.lo libcoot-api.la libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/_coot_headless_api_la-wrap-coot-api.o .libs/_coot_headless_api_la-molecules-container-swig.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/api/.libs ./.libs/libcoot-api.so -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot_headless_api.so.0 -o .libs/_coot_headless_api.so.0.0.0 libtool: link: (cd ".libs" && rm -f "_coot_headless_api.so.0" && ln -s "_coot_headless_api.so.0.0.0" "_coot_headless_api.so.0") libtool: link: (cd ".libs" && rm -f "_coot_headless_api.so" && ln -s "_coot_headless_api.so.0.0.0" "_coot_headless_api.so") libtool: link: ( cd ".libs" && rm -f "_coot_headless_api.la" && ln -s "../_coot_headless_api.la" "_coot_headless_api.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/api' Making all in layla make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main.o main.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o layla_embedded.lo layla_embedded.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o generators.lo generators.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o notifier.lo notifier.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o signals.lo signals.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o state.lo state.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ui.lo ui.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o utils.lo utils.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" 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-I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o python_utils.lo python_utils.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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-mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c generators.cpp -fPIC -DPIC -o .libs/generators.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c state.cpp -fPIC -DPIC -o .libs/state.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c utils.cpp -fPIC -DPIC -o .libs/utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c signals.cpp -fPIC -DPIC -o .libs/signals.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c layla_embedded.cpp -fPIC -DPIC -o .libs/layla_embedded.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ui.cpp -fPIC -DPIC -o .libs/ui.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c notifier.cpp -fPIC -DPIC -o .libs/notifier.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas.cpp -fPIC -DPIC -o .libs/ligand_editor_canvas.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/model.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/model.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/core.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/core.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c python_utils.cpp -fPIC -DPIC -o .libs/python_utils.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/tools.lo ligand_editor_canvas/tools.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/tools.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/tools.o In file included from python_utils.cpp:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/render.lo ligand_editor_canvas/render.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/render.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/render.o In file included from main.cpp:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ligand_editor_canvas/model.cpp: In member function 'std::pair coot::ligand_editor_canvas::CanvasMolecule::get_on_screen_coords(float, float) const': ligand_editor_canvas/model.cpp:144:85: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 144 | std::pair CanvasMolecule::get_on_screen_coords(float x, float y) const noexcept { | ^~~~~~~~ ligand_editor_canvas/model.cpp: In member function 'void coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()': ligand_editor_canvas/model.cpp:564:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 564 | while(i!=ring.size()) { | ~^~~~~~~~~~~~~ ligand_editor_canvas/core.cpp: In member function 'void coot::ligand_editor_canvas::impl::WidgetCoreData::undo_edition()': ligand_editor_canvas/core.cpp:74:34: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 74 | if(this->state_stack->size() > this->state_stack_pos + 1) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:586:62: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] 586 | bool x_requirement = bond_ptr->second_atom_x > bond_ptr->first_atom_x == sign_of_y_offset_from_center; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:588:62: warning: suggest parentheses around comparison in operand of '!=' [-Wparentheses] 588 | bool y_requirement = bond_ptr->second_atom_y <= bond_ptr->first_atom_y != sign_of_x_offset_from_center; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:615:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 615 | if(j==ring.size()) { | ~^~~~~~~~~~~~~ ligand_editor_canvas/model.cpp: In member function 'void coot::ligand_editor_canvas::CanvasMolecule::build_internal_molecule_representation(const RDGeom::INT_POINT2D_MAP&)': ligand_editor_canvas/model.cpp:786:54: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'std::tuple_element<0, const std::pair >::type' {aka 'const int'} [-Wsign-compare] 786 | auto the_other_atom_idx = first_atom_idx == atom_idx ? second_atom_idx : first_atom_idx; | ~~~~~~~~~~~~~~~^~~~~~~~~~~ ligand_editor_canvas/model.cpp: In lambda function: ligand_editor_canvas/model.cpp:872:68: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 872 | unsigned int the_other_atom_idx = bond->first_atom_idx == atom_idx ? bond->second_atom_idx : bond->first_atom_idx; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ signals.cpp: In lambda function: signals.cpp:68:36: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 68 | if(gtk_combo_box_get_active(cb) == -1) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94, from signals.cpp:22: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:69:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 69 | gtk_combo_box_set_active(cb,0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_apply(GtkButton*, gpointer)': signals.cpp:73:34: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 73 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(molecule_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:83:39: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 83 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(molecule_combobox), smiles.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_generator_monomer_id_combobox_changed(GtkComboBox*, gpointer)': signals.cpp:96:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 96 | if(strcmp(gtk_combo_box_get_active_id(self),"Custom") != 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_generator_program_combobox_changed(GtkComboBox*, gpointer)': signals.cpp:108:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 108 | if(strcmp(gtk_combo_box_get_active_id(self),"acedrg") == 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_generator_input_format_combobox_changed(GtkComboBox*, gpointer)': signals.cpp:121:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 121 | if(strcmp(gtk_combo_box_get_active_id(self),"molfile") == 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp: In function 'void layla_on_apply_dialog_accepted(GtkButton*, gpointer)': signals.cpp:159:42: warning: 'const char* gtk_combo_box_get_active_id(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 159 | if(strcmp(gtk_combo_box_get_active_id(GTK_COMBO_BOX(monomer_id_combobox)),"Custom") != 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:145:14: note: declared here 145 | const char * gtk_combo_box_get_active_id (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:160:73: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 160 | auto monomer_id = std::string(gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(monomer_id_combobox))); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:169:71: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 169 | auto program_name = std::string(gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(program_combobox))); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:172:76: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 172 | auto input_format_name = std::string(gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(input_format_combobox))); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ signals.cpp:175:74: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 175 | const auto* molecule_smiles_cstr = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(molecule_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp: In instantiation of 'coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings():: [with auto:30 = std::shared_ptr]': /usr/include/c++/14/bits/predefined_ops.h:318:23: required from 'bool __gnu_cxx::__ops::_Iter_pred<_Predicate>::operator()(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()::]' 318 | { return bool(_M_pred(*__it)); } | ~~~~~~~^~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2101:14: required from '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' 2101 | if (__pred(__first)) | ~~~~~~^~~~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2146:23: required from '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' 2146 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2147 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:3876:28: required from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()::]' 3876 | return std::__find_if(__first, __last, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 3877 | __gnu_cxx::__ops::__pred_iter(__pred)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:572:37: required from here 572 | auto bond = std::find_if(bonds_of_atom_one->second.begin(),bonds_of_atom_one->second.end(),[=](const auto bond){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 | }); | ~~ ligand_editor_canvas/model.cpp:573:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:573:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:574:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:574:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp: In instantiation of 'coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int):: [with auto:35 = std::shared_ptr]': /usr/include/c++/14/bits/predefined_ops.h:318:23: required from 'bool __gnu_cxx::__ops::_Iter_pred<_Predicate>::operator()(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int)::]' 318 | { return bool(_M_pred(*__it)); } | ~~~~~~~^~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2101:14: required from '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' 2101 | if (__pred(__first)) | ~~~~~~^~~~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:2146:23: required from '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' 2146 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2147 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:3876:28: required from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int)::]' 3876 | return std::__find_if(__first, __last, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 3877 | __gnu_cxx::__ops::__pred_iter(__pred)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:928:31: required from here 928 | auto target = std::find_if(bonds_for_atom_a->second.begin(),bonds_for_atom_a->second.end(),[=](const auto& bond){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 | }); | ~~ ligand_editor_canvas/model.cpp:929:38: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ ligand_editor_canvas/model.cpp:929:72: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ In file included from ui.cpp:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from state.cpp:38: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ state.cpp: In member function 'void coot::layla::LaylaState::load_from_smiles()': state.cpp:147:39: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 147 | auto* load_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43, from ligand_editor_canvas/render.hpp:25, from ligand_editor_canvas/core.hpp:30, from ligand_editor_canvas.hpp:25, from state.hpp:24, from state.cpp:22: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:30, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcssenumtypes.h:11, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:33, from /usr/include/gtk-4.0/gtk/gtk.h:29: state.cpp: In lambda function: state.cpp:167:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 167 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:166:41: note: in expansion of macro 'G_CALLBACK' 166 | g_signal_connect(entry, "activate", G_CALLBACK(+[](GtkEntry* entry, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:176:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 176 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:175:48: note: in expansion of macro 'G_CALLBACK' 175 | g_signal_connect(submit_button, "clicked", G_CALLBACK(+[](GtkButton* btn, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:200:51: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 200 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 201 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 202 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 204 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 205 | "Error: Molecule could not be constructed.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 | e.what() | ~~~~~~~~ 207 | ); | ~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:179:47: note: in expansion of macro 'G_CALLBACK' 179 | g_signal_connect(load_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:192: /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:211:28: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 211 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:179:47: note: in expansion of macro 'G_CALLBACK' 179 | g_signal_connect(load_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::file_import_molecule()': state.cpp:221:44: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 221 | GtkWidget *load_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:246:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 246 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:293:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 293 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 294 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 295 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 297 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 298 | "Error: Monomer \"%s\" could not be found.\n", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 | monomer_type.c_str() | ~~~~~~~~~~~~~~~~~~~~ 300 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:304:32: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 304 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::run_choose_element_dialog()': state.cpp:313:49: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 313 | auto* choose_element_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:337:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 337 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:336:48: note: in expansion of macro 'G_CALLBACK' 336 | g_signal_connect(submit_button, "clicked", G_CALLBACK(+[](GtkButton* btn, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:353:51: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 353 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 354 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 355 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 357 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 358 | "Error: Invalid symbol:\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | e.what() | ~~~~~~~~ 360 | ); | ~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:340:57: note: in expansion of macro 'G_CALLBACK' 340 | g_signal_connect(choose_element_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:364:28: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 364 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:340:57: note: in expansion of macro 'G_CALLBACK' 340 | g_signal_connect(choose_element_dialog, "response", G_CALLBACK(+[](GtkDialog* dialog, gint response_id, gpointer user_data){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::file_fetch_molecule()': state.cpp:374:44: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 374 | GtkWidget *load_dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:396:28: warning: 'void gtk_dialog_response(GtkDialog*, int)' is deprecated [-Wdeprecated-declarations] 396 | gtk_dialog_response(GTK_DIALOG(user_data), GTK_RESPONSE_ACCEPT); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:168:6: note: declared here 168 | void gtk_dialog_response (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:429:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 429 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 430 | GTK_WINDOW(dialog), | ~~~~~~~~~~~~~~~~~~~ 431 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 433 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 434 | "Error: Molecule could not be fetched.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 | e.what() | ~~~~~~~~ 436 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:440:32: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 440 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In member function 'void coot::layla::LaylaState::save_file(unsigned int, const char*, GtkWindow*)': state.cpp:479:47: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 479 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 480 | parent, | ~~~~~~~ 481 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 483 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 484 | "Error: Molecule could not be saved to file.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 | e.what() | ~~~~~~~~ 486 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:487:24: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 487 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:570:56: warning: too many arguments for format [-Wformat-extra-args] 570 | "Nothing was chosen!", | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:561:58: note: in expansion of macro 'G_CALLBACK' 561 | g_signal_connect(G_OBJECT(ok_button), "clicked", G_CALLBACK(+[](GtkButton* button, gpointer userdata){ | ^~~~~~~~~~ state.cpp:566:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 566 | auto* message = gtk_message_dialog_new(window, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 567 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 569 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 570 | "Nothing was chosen!", | ~~~~~~~~~~~~~~~~~~~~~~ 571 | NULL); | ~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:561:58: note: in expansion of macro 'G_CALLBACK' 561 | g_signal_connect(G_OBJECT(ok_button), "clicked", G_CALLBACK(+[](GtkButton* button, gpointer userdata){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ state.cpp:572:32: warning: 'void gtk_widget_show(GtkWidget*)' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 572 | gtk_widget_show(message); | ~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/glib-2.0/gobject/gsignal.h:519:60: note: in definition of macro 'g_signal_connect' 519 | g_signal_connect_data ((instance), (detailed_signal), (c_handler), (data), NULL, (GConnectFlags) 0) | ^~~~~~~~~ state.cpp:561:58: note: in expansion of macro 'G_CALLBACK' 561 | g_signal_connect(G_OBJECT(ok_button), "clicked", G_CALLBACK(+[](GtkButton* button, gpointer userdata){ | ^~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ state.cpp: In lambda function: state.cpp:607:55: warning: 'GtkWidget* gtk_message_dialog_new(GtkWindow*, GtkDialogFlags, GtkMessageType, GtkButtonsType, const char*, ...)' is deprecated [-Wdeprecated-declarations] 607 | auto* message = gtk_message_dialog_new( | ~~~~~~~~~~~~~~~~~~~~~~^ 608 | GTK_WINDOW(source_object), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 | GTK_DIALOG_DESTROY_WITH_PARENT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 | GTK_MESSAGE_ERROR, | ~~~~~~~~~~~~~~~~~~ 611 | GTK_BUTTONS_CLOSE, | ~~~~~~~~~~~~~~~~~~ 612 | "Error: Molecule could not be loaded.\n%s", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 | e.what() | ~~~~~~~~ 614 | ); | ~ /usr/include/gtk-4.0/gtk/deprecated/gtkmessagedialog.h:81:12: note: declared here 81 | GtkWidget* gtk_message_dialog_new (GtkWindow *parent, | ^~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas.cpp: In function 'void on_hover(GtkEventControllerMotion*, gdouble, gdouble, gpointer)': ligand_editor_canvas.cpp:260:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 260 | auto coords = target.get_on_screen_coords(atom.x, atom.y); | ^ ligand_editor_canvas/render.cpp: In member function 'std::pair<_graphene_point_t, _graphene_point_t> coot::ligand_editor_canvas::impl::MoleculeRenderContext::cropped_bond_coords(const graphene_point_t&, unsigned int, const graphene_point_t&, unsigned int)': ligand_editor_canvas/render.cpp:756:219: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 756 | std::pair MoleculeRenderContext::cropped_bond_coords(const graphene_point_t& first_atom, unsigned int first_atom_idx, const graphene_point_t& second_atom, unsigned int second_atom_idx) { | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_wedge(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:869:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 869 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_dashed_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:910:95: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 910 | auto [current,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); | ^ ligand_editor_canvas/render.cpp:912:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 912 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_wavy_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:943:110: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 943 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_side_bond_line(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool, std::optional, std::optional)': ligand_editor_canvas/render.cpp:1067:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1067 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp:1115:5: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1115 | ); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_centered_double_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:1171:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1171 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ^ ligand_editor_canvas/render.cpp:1185:110: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1185 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_wedge(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:846:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 846 | void MoleculeRenderContext::draw_straight_wedge(const CanvasMolecule::Bond& bond, bool reversed) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:846:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:846:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:867:63: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 867 | auto [origin_cropped,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:869:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 869 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_dashed_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:889:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 889 | void MoleculeRenderContext::draw_straight_dashed_bond(const CanvasMolecule::Bond& bond, bool reversed) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:889:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:889:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:889:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:910:56: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 910 | auto [current,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:912:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 912 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_wavy_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:934:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 934 | void MoleculeRenderContext::draw_wavy_bond(const CanvasMolecule::Bond& bond) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_side_bond_line(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool, std::optional, std::optional)': ligand_editor_canvas/render.cpp:1066:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1066 | void MoleculeRenderContext::draw_side_bond_line(const CanvasMolecule::Bond& bond, bool addOrSub, std::optional first_shortening_proportion, std::optional second_shortening_proportion) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:1066:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1066:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1066:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1067:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1067 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp:1110:50: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1110 | auto [first_c,second_c] = cropped_bond_coords( | ~~~~~~~~~~~~~~~~~~~^ 1111 | first_atom_centered, | ~~~~~~~~~~~~~~~~~~~~ 1112 | bond.first_atom_idx, | ~~~~~~~~~~~~~~~~~~~~ 1113 | second_atom_centered, | ~~~~~~~~~~~~~~~~~~~~~ 1114 | bond.second_atom_idx | ~~~~~~~~~~~~~~~~~~~~ 1115 | ); | ~ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_centered_double_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': ligand_editor_canvas/render.cpp:1170:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1170 | void MoleculeRenderContext::draw_centered_double_bond(const CanvasMolecule::Bond& bond) { | ^~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/render.cpp:1170:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1170:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1170:6: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 ligand_editor_canvas/render.cpp:1171:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1171 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ligand_editor_canvas/render.cpp:1185:46: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1185 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-layla.la -rpath /usr/lib/aarch64-linux-gnu layla_embedded.lo generators.lo notifier.lo signals.lo state.lo ui.lo utils.lo ligand_editor_canvas/core.lo ligand_editor_canvas.lo ligand_editor_canvas/model.lo ligand_editor_canvas/tools.lo ligand_editor_canvas/render.lo python_utils.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/layla_embedded.o .libs/generators.o .libs/notifier.o .libs/signals.o .libs/state.o .libs/ui.o .libs/utils.o ligand_editor_canvas/.libs/core.o .libs/ligand_editor_canvas.o ligand_editor_canvas/.libs/model.o ligand_editor_canvas/.libs/tools.o ligand_editor_canvas/.libs/render.o .libs/python_utils.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-layla.so.0 -o .libs/libcoot-layla.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-layla.so.0" && ln -s "libcoot-layla.so.0.0.0" "libcoot-layla.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-layla.so" && ln -s "libcoot-layla.so.0.0.0" "libcoot-layla.so") libtool: link: ( cd ".libs" && rm -f "libcoot-layla.la" && ln -s "../libcoot-layla.la" "libcoot-layla.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o layla main.o libcoot-layla.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/layla main.o -lcurl ./.libs/libcoot-layla.so ../utils/.libs/libcoot-utils.so -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' Making all in validation-graphs make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 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-I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o validation-graph-widget.lo validation-graph-widget.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-std=c++17 -c -o validation-graphs.lo validation-graphs.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o validation-information.lo validation-information.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sequence-view-widget.lo sequence-view-widget.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-graphs.cc -fPIC -DPIC -o .libs/validation-graphs.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-graph-widget.cc -fPIC -DPIC -o .libs/validation-graph-widget.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-information.cc -fPIC -DPIC -o .libs/validation-information.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-validation-information.cc -fPIC -DPIC -o .libs/residue-validation-information.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-view-widget.cc -fPIC -DPIC -o .libs/sequence-view-widget.o validation-graph-widget.cc: In function 'void coot_validation_graph_snapshot(GtkWidget*, GtkSnapshot*)': validation-graph-widget.cc:229:66: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 229 | GtkStyleContext* style_context = gtk_widget_get_style_context(widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from validation-graph-widget.hh:28, from validation-graph-widget.cc:26: /usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ validation-graph-widget.cc:230:32: warning: 'void gtk_style_context_get_color(GtkStyleContext*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 230 | gtk_style_context_get_color(style_context,&attribute_color); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:267: /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:112:6: note: declared here 112 | void gtk_style_context_get_color (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-validation-graphs.la -rpath /usr/lib/aarch64-linux-gnu residue-validation-information.lo validation-graph-widget.lo validation-graphs.lo validation-information.lo sequence-view-widget.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/residue-validation-information.o .libs/validation-graph-widget.o .libs/validation-graphs.o .libs/validation-information.o .libs/sequence-view-widget.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../analysis/.libs/libcoot-analysis.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-validation-graphs.so.0 -o .libs/libcoot-validation-graphs.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-validation-graphs.so.0" && ln -s "libcoot-validation-graphs.so.0.0.0" "libcoot-validation-graphs.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-validation-graphs.so" && ln -s "libcoot-validation-graphs.so.0.0.0" "libcoot-validation-graphs.so") libtool: link: ( cd ".libs" && rm -f "libcoot-validation-graphs.la" && ln -s "../libcoot-validation-graphs.la" "libcoot-validation-graphs.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' Making all in src make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o init_coot_as_python_module.lo init_coot_as_python_module.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o boids.lo boids.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o boot-python.lo boot-python.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-overlaps.lo atom-overlaps.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o git-revision-count.lo git-revision-count.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o scm-boot-guile.lo scm-boot-guile.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 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-I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c boids.cc -fPIC -DPIC -o .libs/boids.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build.cc -fPIC -DPIC -o .libs/c-interface-build.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c scm-boot-guile.cc -fPIC -DPIC -o .libs/scm-boot-guile.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-bonds.cc -fPIC -DPIC -o .libs/c-interface-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c boot-python.cc -fPIC -DPIC -o .libs/boot-python.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-overlaps.cc -fPIC -DPIC -o .libs/atom-overlaps.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c init_coot_as_python_module.cc -fPIC -DPIC -o .libs/init_coot_as_python_module.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-side-chain.cc -fPIC -DPIC -o .libs/c-interface-build-side-chain.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-analysis.cc -fPIC -DPIC -o .libs/c-interface-analysis.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c git-revision-count.cc -fPIC -DPIC -o .libs/git-revision-count.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-main-chain.cc -fPIC -DPIC -o .libs/c-interface-build-main-chain.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-symmetry.lo c-interface-build-symmetry.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-morph.cc -fPIC -DPIC -o .libs/c-interface-build-morph.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-gui.lo c-interface-build-gui.cc In file included from boids.cc:108: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-symmetry.cc -fPIC -DPIC -o .libs/c-interface-build-symmetry.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-curlew.lo c-interface-curlew.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-gui.cc -fPIC -DPIC -o .libs/c-interface-build-gui.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-curlew.cc -fPIC -DPIC -o .libs/c-interface-curlew.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-database.lo c-interface-database.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-database.cc -fPIC -DPIC -o .libs/c-interface-database.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-gui.lo c-interface-gui.cc In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-analysis.cc:34: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-main-chain.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build.cc:56: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-gui.cc -fPIC -DPIC -o .libs/c-interface-gui.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-side-chain.cc:56: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-bonds.cc:42: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from atom-overlaps.cc:40: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-symmetry.cc:55: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-analysis.cc:36: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build.cc:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-gui.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:37, from c-interface-curlew.cc:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-build-morph.cc:55: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-main-chain.cc:63: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-bonds.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-curlew.cc:70: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-side-chain.cc:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from init_coot_as_python_module.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-gui.cc:59: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build.cc:74: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from atom-overlaps.cc:39: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-morph.cc:65: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:39, from atom-overlaps.cc:42: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-symmetry.cc:64: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:39, from c-interface-bonds.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-gui.cc:72: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-curlew.cc:63: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from init_coot_as_python_module.cc:34: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-main-chain.cc:69: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-side-chain.cc:72: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-gui.cc:65: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc: In function 'void fill_move_molecule_here_dialog(GtkWidget*)': c-interface-build-gui.cc:248:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 248 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc: In function 'bool renumber_residues_from_widget(GtkWidget*)': c-interface-build-gui.cc:420:64: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 420 | std::string chain_id = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(chain_id_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-morph.cc:71: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-build-gui.cc: In function 'void mutate_sequence_chain_combobox_changed(GtkWidget*, gpointer)': c-interface-build-gui.cc:914:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 914 | char *atc = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc: In function 'GtkWidget* wrapped_create_fast_ss_search_dialog()': c-interface-build-gui.cc:1617:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1617 | gtk_combo_box_set_active(GTK_COMBO_BOX(helix_temp_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1618:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1618 | gtk_combo_box_set_active(GTK_COMBO_BOX(helix_noaa_combobox), 1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1619:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1619 | gtk_combo_box_set_active(GTK_COMBO_BOX(strand_temp_combobox), 1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1620:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1620 | gtk_combo_box_set_active(GTK_COMBO_BOX(strand_noaa_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-build-gui.cc:1621:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1621 | gtk_combo_box_set_active(GTK_COMBO_BOX(radius_combobox),1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, from c-interface-build-symmetry.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-gtk2.lo c-interface-gtk2.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-gtk2.cc -fPIC -DPIC -o .libs/c-interface-gtk2.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-utils.hh:26, from curl-utils.hh:36, from c-interface-gui.cc:70: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-gui.cc:78: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-gui.cc: In function 'void open_cif_dictionary_file_selector_dialog()': c-interface-gui.cc:156:65: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 156 | GtkWidget *aa_hbutton_box = gtk_dialog_get_content_area(GTK_DIALOG(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void fill_remarks_browswer_chooser(GtkWidget*)': c-interface-gui.cc:267:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 267 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_coot_references_button(GtkWidget*)': c-interface-gui.cc:823:47: warning: 'GtkWidget* gtk_dialog_get_header_bar(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 823 | GtkWidget *hbox = gtk_dialog_get_header_bar(GTK_DIALOG(widget)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:174:13: note: declared here 174 | GtkWidget * gtk_dialog_get_header_bar (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_recentre_on_read_pdb_combobox(GtkWidget*)': c-interface-gui.cc:1194:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1194 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1196:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1196 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), 1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void store_window_size(int, GtkWidget*)': c-interface-gui.cc:1317:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1317 | gtk_widget_get_allocation(widget, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_filechooser_filter_button(GtkWidget*, short int)': c-interface-gui.cc:1649:30: warning: 'void gtk_file_chooser_add_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1649 | gtk_file_chooser_add_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1650 | GTK_FILE_FILTER (filterall)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:136:22: note: declared here 136 | void gtk_file_chooser_add_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1651:30: warning: 'void gtk_file_chooser_add_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1651 | gtk_file_chooser_add_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1652 | GTK_FILE_FILTER (filterselect)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:136:22: note: declared here 136 | void gtk_file_chooser_add_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1656:32: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1656 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1657 | GTK_FILE_FILTER (filterselect)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:1660:32: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1660 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER (filechooser), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1661 | GTK_FILE_FILTER (filterall)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void add_filechooser_extra_filter_button(GtkWidget*, const gchar*, const gchar*)': c-interface-gui.cc:1676:31: warning: 'void gtk_file_chooser_add_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 1676 | gtk_file_chooser_add_filter (GTK_FILE_CHOOSER (fileselection), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1677 | GTK_FILE_FILTER (filter)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:136:22: note: declared here 136 | void gtk_file_chooser_add_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void set_refine_params_comboboxes()': c-interface-gui.cc:2115:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2115 | if (cb1) gtk_combo_box_set_active(GTK_COMBO_BOX(cb1), g.refine_params_dialog_geman_mcclure_alpha_combobox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2116:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2116 | if (cb2) gtk_combo_box_set_active(GTK_COMBO_BOX(cb2), g.refine_params_dialog_rama_restraints_weight_combobox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2117:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2117 | if (cb3) gtk_combo_box_set_active(GTK_COMBO_BOX(cb3), g.refine_params_dialog_lennard_jones_epsilon_combobox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2118:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2118 | if (cb4) gtk_combo_box_set_active(GTK_COMBO_BOX(cb4), g.refine_params_dialog_torsions_weight_combox_position); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void fill_chiral_volume_molecule_combobox(GtkWidget*)': c-interface-gui.cc:2180:50: warning: 'GtkWidget* gtk_combo_box_new()' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2180 | GtkWidget *combobox_new = gtk_combo_box_new(); | ~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:74:15: note: declared here 74 | GtkWidget *gtk_combo_box_new (void); | ^~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void pepflips_by_difference_map_dialog()': c-interface-gui.cc:2205:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 2205 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(model_combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:2206:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 2206 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(map_combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In lambda function: c-interface-gui.cc:3359:40: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 3359 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(self), &rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'GtkWidget* wrapped_create_show_symmetry_window()': c-interface-gui.cc:3368:68: warning: 'GtkWidget* gtk_color_button_new_with_rgba(const GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 3368 | GtkWidget *colour_button = gtk_color_button_new_with_rgba(&rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:82: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorbutton.h:53:14: note: declared here 53 | GtkWidget * gtk_color_button_new_with_rgba (const GdkRGBA *rgba); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void save_coordinates_using_widget(GtkWidget*)': c-interface-gui.cc:3746:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 3746 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void save_symmetry_coords_from_filechooser(GtkWidget*)': c-interface-gui.cc:3773:43: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 3773 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'GtkWidget* wrapped_create_residue_editor_select_monomer_type_dialog()': c-interface-gui.cc:4475:36: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4475 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(combo_box)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:4484:38: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4484 | gtk_combo_box_text_append_text (GTK_COMBO_BOX_TEXT(combo_box), s.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc:4485:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 4485 | gtk_combo_box_set_active(GTK_COMBO_BOX(combo_box), i); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-info.lo c-interface-info.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-info.cc -fPIC -DPIC -o .libs/c-interface-info.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-kk.lo c-interface-kk.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-image.lo c-interface-image.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-kk.cc -fPIC -DPIC -o .libs/c-interface-kk.o In file included from c-interface-gtk2.cc:54: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-image.cc -fPIC -DPIC -o .libs/c-interface-image.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ligands-gui.lo c-interface-ligands-gui.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ligands-gui.cc -fPIC -DPIC -o .libs/c-interface-ligands-gui.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-info.cc:64: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-info.cc:67: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-gtk2.cc:59: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ligands.lo c-interface-ligands.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-maps.lo c-interface-maps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ligands.cc -fPIC -DPIC -o .libs/c-interface-ligands.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-info.cc:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-maps.cc -fPIC -DPIC -o .libs/c-interface-maps.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mmdb.lo c-interface-mmdb.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mogul.lo c-interface-mogul.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mmdb.cc -fPIC -DPIC -o .libs/c-interface-mmdb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mogul.cc -fPIC -DPIC -o .libs/c-interface-mogul.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-kk.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mogul-scripting.lo c-interface-mogul-scripting.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface.h:82, from c-interface-gtk2.cc:56: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc: In function 'gboolean fileselection_sort_button_foreach_func(GtkTreeModel*, GtkTreePath*, GtkTreeIter*, gpointer)': c-interface-gtk2.cc:101:23: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 101 | gtk_tree_model_get (model, iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 102 | 0, &file_name, | ~~~~~~~~~~~~~~ 103 | -1); | ~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc:104:43: warning: 'char* gtk_tree_path_to_string(GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 104 | tree_path_str = gtk_tree_path_to_string(path); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:209:14: note: declared here 209 | char *gtk_tree_path_to_string (GtkTreePath *path); | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc: In function 'gboolean fileselection_filter_button_foreach_func(GtkTreeModel*, GtkTreePath*, GtkTreeIter*, gpointer)': c-interface-gtk2.cc:143:23: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 143 | gtk_tree_model_get (model, iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 144 | 0, &file_name, | ~~~~~~~~~~~~~~ 145 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc:151:34: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 151 | if (gtk_tree_model_get_iter(model, iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc:154:31: warning: 'gboolean gtk_list_store_remove(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 154 | gtk_list_store_remove(GTK_LIST_STORE(model), iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:95:15: note: declared here 95 | gboolean gtk_list_store_remove (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ligands-gui.cc:51: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mogul-scripting.cc -fPIC -DPIC -o .libs/c-interface-mogul-scripting.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ligands.cc:46: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from c-interface-image.cc:38: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from c-interface-image.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from c-interface-mogul-scripting.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from c-interface-mogul.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-ligands-gui.cc:54: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-ligands.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-maps.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mutate.lo c-interface-mutate.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ncs.lo c-interface-ncs.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-network.lo c-interface-network.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mutate.cc -fPIC -DPIC -o .libs/c-interface-mutate.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-image.cc:47: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-network.cc -fPIC -DPIC -o .libs/c-interface-network.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ncs.cc -fPIC -DPIC -o .libs/c-interface-ncs.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-mogul.cc:33: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-mmdb.cc:40: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-ligands-gui.cc:57: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-ligands.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-maps.cc:52: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ c-interface-info.cc: In function 'PyObject* get_pointer_position_frac_py()': c-interface-info.cc:2631:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2631 | std::pair xy = g.get_pointer_position_frac(); | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-nucleotides.lo c-interface-nucleotides.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-nucleotides.cc -fPIC -DPIC -o .libs/c-interface-nucleotides.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ c-interface-image.cc: In function 'GtkWidget* get_image_widget_for_comp_id(const std::string&, int)': c-interface-image.cc:132:45: warning: 'GtkWidget* gtk_image_new_from_pixbuf(GdkPixbuf*)' is deprecated: Use 'gtk_image_new_from_paintable' instead [-Wdeprecated-declarations] 132 | r = gtk_image_new_from_pixbuf(pixbuf); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkentry.h:40, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/gtkimage.h:78:12: note: declared here 78 | GtkWidget* gtk_image_new_from_pixbuf (GdkPixbuf *pixbuf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, from c-interface-network.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ c-interface-mogul.cc: In function 'GtkCellRenderer* coot::mogul_results_add_cell_renderer(GtkTreeView*, GtkTreeStore*, const std::string&, int, int)': c-interface-mogul.cc:218:63: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 218 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:219:56: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 219 | GtkTreeViewColumn *column = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:220:34: warning: 'void gtk_tree_view_column_set_title(GtkTreeViewColumn*, const char*)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 220 | gtk_tree_view_column_set_title(column, column_title.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:165:25: note: declared here 165 | void gtk_tree_view_column_set_title (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:221:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 221 | gtk_tree_view_append_column(tree_view, column); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:222:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 222 | gtk_tree_view_column_pack_start(column, cell_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:223:38: warning: 'void gtk_tree_view_column_add_attribute(GtkTreeViewColumn*, GtkCellRenderer*, const char*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 223 | gtk_tree_view_column_add_attribute(column, cell_renderer, "text", pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:101:25: note: declared here 101 | void gtk_tree_view_column_add_attribute (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:225:43: warning: 'void gtk_tree_view_column_set_sort_column_id(GtkTreeViewColumn*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 225 | gtk_tree_view_column_set_sort_column_id(column, pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:201:25: note: declared here 201 | void gtk_tree_view_column_set_sort_column_id (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::fill_mogul_bonds_tab(GtkTreeView*, GtkWidget*, const mogul&, mmdb::Residue*)': c-interface-mogul.cc:289:55: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 289 | GtkTreeStore *tree_store_bonds = gtk_tree_store_new(8, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 | G_TYPE_INT, | ~~~~~~~~~~~ 291 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 | G_TYPE_STRING, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:292: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:295:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 295 | gtk_tree_view_set_model(tv_bonds, GTK_TREE_MODEL(tree_store_bonds)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:320:37: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 320 | gtk_tree_store_append(tree_store_bonds, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:321:34: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 321 | gtk_tree_store_set(tree_store_bonds, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 | 0, atom_name_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 323 | 1, atom_name_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 324 | 2, m[i].counts, | ~~~~~~~~~~~~~~~ 325 | 3, m_value.c_str(), | ~~~~~~~~~~~~~~~~~~~ 326 | 4, m_mean.c_str(), | ~~~~~~~~~~~~~~~~~~ 327 | 5, m_median.c_str(), | ~~~~~~~~~~~~~~~~~~~~ 328 | 6, m_std_dev.c_str(), | ~~~~~~~~~~~~~~~~~~~~~ 329 | 7, m[i].z, | ~~~~~~~~~~ 330 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:346:61: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 346 | GtkTreeSelection *sel_bonds = gtk_tree_view_get_selection(GTK_TREE_VIEW(mogul_bonds_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::on_mogul_bonds_selection_changed(GtkTreeSelection*, gpointer)': c-interface-mogul.cc:362:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 362 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:290: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:368:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 368 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 369 | 0, &atom_id_1, | ~~~~~~~~~~~~~~ 370 | 1, &atom_id_2, | ~~~~~~~~~~~~~~ 371 | 2, &value, | ~~~~~~~~~~ 372 | 3, &mean, | ~~~~~~~~~ 373 | 4, &median, | ~~~~~~~~~~~ 374 | 5, &esd, | ~~~~~~~~ 375 | 6, &z, | ~~~~~~ 376 | -1); | ~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::fill_mogul_angles_tab(GtkTreeView*, GtkWidget*, const mogul&, mmdb::Residue*)': c-interface-mogul.cc:427:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 427 | GtkTreeStore *tree_store_angles = gtk_tree_store_new(9, | ~~~~~~~~~~~~~~~~~~^~~ 428 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 | G_TYPE_INT, | ~~~~~~~~~~~ 430 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 | G_TYPE_STRING, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:434:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 434 | gtk_tree_view_set_model(tv_angles, GTK_TREE_MODEL(tree_store_angles)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:463:40: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 463 | gtk_tree_store_append(tree_store_angles, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:464:37: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 464 | gtk_tree_store_set(tree_store_angles, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 | 0, atom_name_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 466 | 1, atom_name_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 467 | 2, atom_name_3.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 468 | 3, m[i].counts, | ~~~~~~~~~~~~~~~ 469 | 4, m_value.c_str(), | ~~~~~~~~~~~~~~~~~~~ 470 | 5, m_mean.c_str(), | ~~~~~~~~~~~~~~~~~~ 471 | 6, m_median.c_str(), | ~~~~~~~~~~~~~~~~~~~~ 472 | 7, m_std_dev.c_str(), | ~~~~~~~~~~~~~~~~~~~~~ 473 | 8, m[i].z, | ~~~~~~~~~~ 474 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:492:62: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 492 | GtkTreeSelection *sel_angles = gtk_tree_view_get_selection(GTK_TREE_VIEW(mogul_angles_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::on_mogul_angles_selection_changed(GtkTreeSelection*, gpointer)': c-interface-mogul.cc:507:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 507 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:515:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 515 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 516 | 0, &atom_id_1, | ~~~~~~~~~~~~~~ 517 | 1, &atom_id_2, | ~~~~~~~~~~~~~~ 518 | 2, &atom_id_3, | ~~~~~~~~~~~~~~ 519 | 3, &value, | ~~~~~~~~~~ 520 | 4, &mean, | ~~~~~~~~~ 521 | 5, &median, | ~~~~~~~~~~~ 522 | 6, &esd, | ~~~~~~~~ 523 | 7, &z, | ~~~~~~ 524 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::fill_mogul_torsions_tab(GtkTreeView*, GtkWidget*, const mogul&, mmdb::Residue*)': c-interface-mogul.cc:591:58: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 591 | GtkTreeStore *tree_store_torsions = gtk_tree_store_new(6, | ~~~~~~~~~~~~~~~~~~^~~ 592 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 | G_TYPE_FLOAT, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:597:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 597 | gtk_tree_view_set_model(tv_torsions, GTK_TREE_MODEL(tree_store_torsions)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:622:31: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 622 | gtk_tree_store_append(tree_store_torsions, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:623:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 623 | gtk_tree_store_set(tree_store_torsions, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 | 0, atom_name_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 625 | 1, atom_name_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 626 | 2, atom_name_3.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 627 | 3, atom_name_4.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 628 | 4, m[i].value, | ~~~~~~~~~~~~~~ 629 | 5, m[i].dmin, | ~~~~~~~~~~~~~ 630 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:641:62: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 641 | GtkTreeSelection *sel_angles = gtk_tree_view_get_selection(GTK_TREE_VIEW(mogul_torsions_treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc: In function 'void coot::on_mogul_torsions_selection_changed(GtkTreeSelection*, gpointer)': c-interface-mogul.cc:655:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 655 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-mogul.cc:663:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 663 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 664 | 0, &atom_id_1, | ~~~~~~~~~~~~~~ 665 | 1, &atom_id_2, | ~~~~~~~~~~~~~~ 666 | 2, &atom_id_3, | ~~~~~~~~~~~~~~ 667 | 3, &atom_id_4, | ~~~~~~~~~~~~~~ 668 | 4, &value, | ~~~~~~~~~~ 669 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ncs.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-mutate.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from c-interface-maps.cc:60: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-ncs.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-network.cc:52: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-nucleotides.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-mutate.cc:44: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-mutate.cc:58: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-pisa.lo c-interface-pisa.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-nucleotides.cc:59: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-pisa.cc -fPIC -DPIC -o .libs/c-interface-pisa.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-network.cc:35: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-network.cc: In function 'PyObject* curl_progress_info_py(const char*)': c-interface-network.cc:427:13: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 427 | info = CURLINFO_CONTENT_LENGTH_DOWNLOAD; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-info.h:138: /usr/include/aarch64-linux-gnu/curl/curl.h:2897:3: note: declared here 2897 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-network.cc:435:13: warning: 'CURLINFO_SIZE_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_SIZE_DOWNLOAD_T [-Wdeprecated-declarations] 435 | info = CURLINFO_SIZE_DOWNLOAD; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/aarch64-linux-gnu/curl/curl.h:2880:3: note: declared here 2880 | CURLINFO_SIZE_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-ncs.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-pisa-gui.lo c-interface-pisa-gui.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-pisa-gui.cc -fPIC -DPIC -o .libs/c-interface-pisa-gui.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-preferences.lo c-interface-preferences.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-preferences.cc -fPIC -DPIC -o .libs/c-interface-preferences.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-python.lo c-interface-python.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-refine.lo c-interface-refine.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-python.cc -fPIC -DPIC -o .libs/c-interface-python.o c-interface-ncs.cc: In function 'std::vector make_ncs_maps(int, int)': c-interface-ncs.cc:954:115: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 954 | graphics_info_t::molecules[imol_model].chain_centre_and_radius(ncs_ghosts[ighst].target_chain_id); | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-refine.cc -fPIC -DPIC -o .libs/c-interface-refine.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-pisa.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-residues.lo c-interface-residues.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-refmac.lo c-interface-refmac.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-residues.cc -fPIC -DPIC -o .libs/c-interface-residues.o In file included from c-interface-python.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-refmac.cc -fPIC -DPIC -o .libs/c-interface-refmac.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-pisa-gui.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-preferences.cc:64: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-refmac.lo simple-refmac.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-refmac.cc -fPIC -DPIC -o .libs/simple-refmac.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from ../coot-utils/glyco-tree.hh:32, from c-interface-residues.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-python.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-pisa.cc:32: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:39, from c-interface-pisa.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-pisa-gui.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, from c-interface-refmac.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cc-interface.hh:39, from c-interface-pisa-gui.cc:35: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-pisa-gui.cc: In function 'void coot::pisa_interfaces_gui(const std::vector&)': c-interface-pisa-gui.cc:53:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 53 | gtk_tree_store_new (12, G_TYPE_INT, G_TYPE_INT, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 | G_TYPE_FLOAT, G_TYPE_FLOAT, G_TYPE_FLOAT, G_TYPE_INT, G_TYPE_INT, G_TYPE_INT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | G_TYPE_INT); | ~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:292: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:58:30: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 58 | gtk_tree_view_set_model(tv_interfaces, GTK_TREE_MODEL(tree_store_interfaces)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:60:31: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 60 | gtk_tree_store_append(tree_store_interfaces, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:61:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 61 | gtk_tree_store_set(tree_store_interfaces, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 | 0, gui_info[i].imol_1, | ~~~~~~~~~~~~~~~~~~~~~~ 63 | 1, gui_info[i].imol_2, | ~~~~~~~~~~~~~~~~~~~~~~ 64 | 2, gui_info[i].chain_id_1.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | 3, gui_info[i].chain_id_2.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | 4, gui_info[i].symop.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 | 5, gui_info[i].interface_area, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | 6, gui_info[i].interface_solv_en, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | 7, gui_info[i].interface_pvalue, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | 8, gui_info[i].n_h_bonds, | ~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | 9, gui_info[i].n_salt_bridges, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | 10, gui_info[i].n_ss_bonds, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | 11, gui_info[i].n_cov_bonds, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:89:58: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 89 | GtkTreeSelection *sel = gtk_tree_view_get_selection(GTK_TREE_VIEW(treeview)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc: In function 'void coot::add_pisa_interfaces_cell_renderer(GtkTreeView*, const std::string&, int)': c-interface-pisa-gui.cc:107:63: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 107 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:108:56: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 108 | GtkTreeViewColumn *column = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:109:34: warning: 'void gtk_tree_view_column_set_title(GtkTreeViewColumn*, const char*)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 109 | gtk_tree_view_column_set_title(column, column_title.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:165:25: note: declared here 165 | void gtk_tree_view_column_set_title (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:110:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 110 | gtk_tree_view_append_column(tree_view, column); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:111:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 111 | gtk_tree_view_column_pack_start(column, cell_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:112:38: warning: 'void gtk_tree_view_column_add_attribute(GtkTreeViewColumn*, GtkCellRenderer*, const char*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 112 | gtk_tree_view_column_add_attribute(column, cell_renderer, "text", pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:101:25: note: declared here 101 | void gtk_tree_view_column_add_attribute (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:114:43: warning: 'void gtk_tree_view_column_set_sort_column_id(GtkTreeViewColumn*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 114 | gtk_tree_view_column_set_sort_column_id(column, pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:201:25: note: declared here 201 | void gtk_tree_view_column_set_sort_column_id (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc: In function 'void coot::on_pisa_interfaces_seletion_changed(GtkTreeSelection*, gpointer)': c-interface-pisa-gui.cc:135:48: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 135 | gboolean r = gtk_tree_selection_get_selected(treeselection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:290: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-pisa-gui.cc:142:26: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 142 | gtk_tree_model_get (model, &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 143 | 0, &imol_1, | ~~~~~~~~~~~ 144 | 1, &imol_2, | ~~~~~~~~~~~ 145 | 2, &chain_id_1, | ~~~~~~~~~~~~~~~ 146 | 3, &chain_id_2, | ~~~~~~~~~~~~~~~ 147 | -1); | ~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-scm.lo c-interface-scm.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sequence.lo c-interface-sequence.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sfs.lo c-interface-sfs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sequence.cc -fPIC -DPIC -o .libs/c-interface-sequence.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-scm.cc -fPIC -DPIC -o .libs/c-interface-scm.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sfs.cc -fPIC -DPIC -o .libs/c-interface-sfs.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-preferences.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-preferences.cc: In function 'void show_preferences()': c-interface-preferences.cc:102:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 102 | gtk_combo_box_text_append_text(combobox, s.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc:118:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 118 | gtk_combo_box_text_append_text(combobox, fonts[j].c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc: In function 'void update_preference_gui()': c-interface-preferences.cc:291:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 291 | gtk_combo_box_set_active(GTK_COMBO_BOX(w), ivalue); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc: In lambda function: c-interface-preferences.cc:473:49: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 473 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(self), &rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-preferences.cc: In function 'void update_preference_gui()': c-interface-preferences.cc:484:77: warning: 'GtkWidget* gtk_color_button_new_with_rgba(const GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 484 | GtkWidget *colour_button = gtk_color_button_new_with_rgba(&bg_colour); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:82: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorbutton.h:53:14: note: declared here 53 | GtkWidget * gtk_color_button_new_with_rgba (const GdkRGBA *rgba); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-residues.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-refmac.cc:33: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-refine.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sharpen.lo c-interface-sharpen.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sharpen.cc -fPIC -DPIC -o .libs/c-interface-sharpen.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from c-interface-scm.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from c-interface-sfs.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from simple-refmac.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30, from c-interface-residues.cc:39: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-sequence.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-superpose.lo c-interface-superpose.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-refine.cc:55: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-superpose.cc -fPIC -DPIC -o .libs/c-interface-superpose.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-validate.lo c-interface-validate.cc In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-sharpen.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-scm.cc:35: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-validate.cc -fPIC -DPIC -o .libs/c-interface-validate.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-view.lo c-interface-view.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-view.cc -fPIC -DPIC -o .libs/c-interface-view.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-widgets.lo c-interface-widgets.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-sequence.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from simple-refmac.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ simple-refmac.cc: In function 'void wrapped_create_simple_refmac_dialog()': simple-refmac.cc:63:37: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 63 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox_file), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 | g.mtz_file_for_refmac.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ simple-refmac.cc:65:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 65 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox_file), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/istream:41, from /usr/include/c++/14/sstream:40, from ../validation-graphs/../geometry/residue-and-atom-specs.hh:26, from ../validation-graphs/residue-validation-information.hh:30, from ../validation-graphs/validation-information.hh:30, from graphics-info.h:32: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(const void*) [with _CharT = char; _Traits = std::char_traits]', inlined from 'void update_preference_gui()' at c-interface-preferences.cc:452:86: /usr/include/c++/14/ostream:299:25: warning: 'colour_button' may be used uninitialized [-Wmaybe-uninitialized] 299 | { return _M_insert(__p); } | ~~~~~~~~~^~~~~ c-interface-preferences.cc: In function 'void update_preference_gui()': c-interface-preferences.cc:225:14: note: 'colour_button' was declared here 225 | GtkWidget *colour_button; | ^~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-widgets.cc -fPIC -DPIC -o .libs/c-interface-widgets.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-validate.cc:49: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:37, from c-interface-view.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-waters.lo c-interface-waters.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-waters-gui.lo c-interface-waters-gui.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-waters.cc -fPIC -DPIC -o .libs/c-interface-waters.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-validate.cc:52: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-superpose.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-waters-gui.cc -fPIC -DPIC -o .libs/c-interface-waters-gui.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface.lo c-interface.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-test.lo c-interface-test.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-alignment.lo cc-interface-alignment.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface.cc -fPIC -DPIC -o .libs/c-interface.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-widgets.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-test.cc -fPIC -DPIC -o .libs/c-interface-test.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-view.cc:34: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-alignment.cc -fPIC -DPIC -o .libs/cc-interface-alignment.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-widgets.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-waters-gui.cc:46: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-graphics.lo cc-interface-graphics.cc In file included from cc-interface.hh:39, from c-interface-validate.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-validate.cc: In function 'GtkWidget* wrapped_create_check_waters_dialog()': c-interface-validate.cc:136:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 136 | gtk_combo_box_set_active(GTK_COMBO_BOX(check_waters_action_combobox), 0); // "Check" | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-interface-validate.cc:143:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 143 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ c-interface-validate.cc: In function 'void do_check_waters_by_widget(GtkWidget*)': c-interface-validate.cc:294:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 294 | gchar *at = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(action_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-merge.lo cc-interface-merge.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface.cc:91: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-graphics.cc -fPIC -DPIC -o .libs/cc-interface-graphics.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-waters.cc:47: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from c-interface.cc:96: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-merge.cc -fPIC -DPIC -o .libs/cc-interface-merge.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-superpose.cc:46: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-waters-gui.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface.cc:102: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-waters.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-molecular-representation.lo cc-interface-molecular-representation.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface-widgets.cc:34: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc: In function 'void remarks_dialog(int)': c-interface-widgets.cc:164:42: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 164 | GtkWidget *d = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ c-interface-widgets.cc:169:58: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 169 | GtkWidget *vbox = gtk_dialog_get_content_area(GTK_DIALOG(d)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc:250:37: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 250 | gtk_dialog_add_button(GTK_DIALOG(d), "Close", GTK_RESPONSE_CLOSE); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc: In function 'void simple_text_dialog(const std::string&, const std::string&, int, int)': c-interface-widgets.cc:608:36: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 608 | GtkWidget *d = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ c-interface-widgets.cc:612:52: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 612 | GtkWidget *vbox = gtk_dialog_get_content_area(GTK_DIALOG(d)); // new method to get vbox fromm dialog | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc:634:54: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 634 | GtkWidget *close_button = gtk_dialog_add_button(GTK_DIALOG(d), "Close", 2); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-widgets.cc:741: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-molecular-representation.cc -fPIC -DPIC -o .libs/cc-interface-molecular-representation.o In file included from cc-interface.hh:37, from cc-interface-graphics.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-alignment.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-test.cc:89: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from c-interface-test.cc:94: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ c-interface.cc: In function 'void mono_mode()': c-interface.cc:1174:53: warning: 'int gtk_widget_get_allocated_width(GtkWidget*)' is deprecated: Use 'gtk_widget_get_width' instead [-Wdeprecated-declarations] 1174 | int x_size = gtk_widget_get_allocated_width(gl_widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:472:23: note: declared here 472 | int gtk_widget_get_allocated_width (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc:1175:54: warning: 'int gtk_widget_get_allocated_height(GtkWidget*)' is deprecated: Use 'gtk_widget_get_height' instead [-Wdeprecated-declarations] 1175 | int y_size = gtk_widget_get_allocated_height(gl_widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:474:23: note: declared here 474 | int gtk_widget_get_allocated_height (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void make_image_povray(const char*)': c-interface.cc:4500:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4500 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void make_image_povray_py(const char*)': c-interface.cc:4524:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4524 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void sequence_view(int)': c-interface.cc:7653:57: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 7653 | GtkStyleContext *sc = gtk_widget_get_style_context(button); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc:7654:34: warning: 'void gtk_style_context_add_class(GtkStyleContext*, const char*)' is deprecated [-Wdeprecated-declarations] 7654 | gtk_style_context_add_class(sc, "circular"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:267: /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:90:10: note: declared here 90 | void gtk_style_context_add_class (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from c-interface-waters.cc:66: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cc-interface-graphics.cc:31: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-molecular-symmetry.lo cc-interface-molecular-symmetry.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from c-interface-test.cc:102: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-molecular-symmetry.cc -fPIC -DPIC -o .libs/cc-interface-molecular-symmetry.o In file included from cc-interface.hh:39, from cc-interface-alignment.cc:43: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-merge.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-molecular-representation.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from c-interface-test.cc:438: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-scripting.lo cc-interface-scripting.cc In file included from cc-interface.hh:37, from cc-interface-molecular-symmetry.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-map-utils.lo cc-interface-map-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-map-utils.cc -fPIC -DPIC -o .libs/cc-interface-map-utils.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-scripting.cc -fPIC -DPIC -o .libs/cc-interface-scripting.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-png.lo cc-interface-png.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from cc-interface-molecular-representation.cc:39: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-png.cc -fPIC -DPIC -o .libs/cc-interface-png.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from cc-interface-merge.cc:42: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ c-interface-test.cc: In function 'PyObject* test_function_py(PyObject*, PyObject*)': c-interface-test.cc:1569:31: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1569 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-user-defined-atom-colours.lo cc-interface-user-defined-atom-colours.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cc-interface-molecular-symmetry.cc:37: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cfc.lo cfc.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-user-defined-atom-colours.cc -fPIC -DPIC -o .libs/cc-interface-user-defined-atom-colours.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cfc.cc -fPIC -DPIC -o .libs/cfc.o In file included from cc-interface-png.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o change-dir.lo change-dir.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c change-dir.cc -fPIC -DPIC -o .libs/change-dir.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cmtz-interface.lo cmtz-interface.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from change-dir.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-map-utils.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o command-line.lo command-line.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cmtz-interface.cc -fPIC -DPIC -o .libs/cmtz-interface.o In file included from cc-interface.hh:37, from cc-interface-user-defined-atom-colours.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o command-line-extern.lo command-line-extern.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c command-line.cc -fPIC -DPIC -o .libs/command-line.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-application.lo coot-application.cc In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-scripting.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c command-line-extern.cc -fPIC -DPIC -o .libs/command-line-extern.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cc-interface-png.cc:55: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-application.cc -fPIC -DPIC -o .libs/coot-application.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cc-interface-user-defined-atom-colours.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-colour.lo coot-colour.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-colour.cc -fPIC -DPIC -o .libs/coot-colour.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from cc-interface-map-utils.cc:31: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30, from cc-interface-png.cc:53: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-align.lo coot-align.cc In file included from cmtz-interface.cc:53: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from command-line.cc:61: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-align.cc -fPIC -DPIC -o .libs/coot-align.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from command-line-extern.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-nomenclature.lo coot-nomenclature.cc In file included from command-arg.hh:33, from graphics-info.h:66, from coot-application.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from cc-interface.hh:37, from cfc.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from c-interface.h:82, from cc-interface-user-defined-atom-colours.cc:26: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from coot-align.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cmtz-interface.cc:58: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-nomenclature.cc -fPIC -DPIC -o .libs/coot-nomenclature.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from cfc.cc:45: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from command-line.cc:56: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from command-line.cc:68: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o coot-glue-gtk2.lo coot-glue-gtk2.c In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c coot-glue-gtk2.c -fPIC -DPIC -o .libs/coot-glue-gtk2.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-glue-gtk2-python.lo coot-glue-gtk2-python.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../ideal/simple-restraint.hh:162, from coot-nomenclature.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-hydrogens.lo coot-hydrogens.cc In file included from cc-interface.hh:39, from command-line-extern.cc:49: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cmtz-interface.cc:43: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc: In function 'void my_combo_box_text_add_items(GtkComboBox*, const std::vector&, int)': cmtz-interface.cc:541:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 541 | GtkListStore *store = gtk_list_store_new(1, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ cmtz-interface.cc:545:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 545 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:546:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 546 | gtk_list_store_set(store, &iter, 0, col_lab.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ cmtz-interface.cc:553:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 553 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:554:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 554 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox), renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:556:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 556 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ cmtz-interface.cc:559:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 559 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), active_label_index); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-phi-psi.lo coot-phi-psi.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-glue-gtk2-python.cc -fPIC -DPIC -o .libs/coot-glue-gtk2-python.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_pythonmodule.lo coot_pythonmodule.cc ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-hydrogens.cc -fPIC -DPIC -o .libs/coot-hydrogens.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-phi-psi.cc -fPIC -DPIC -o .libs/coot-phi-psi.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_pythonmodule.cc -fPIC -DPIC -o .libs/coot_pythonmodule.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ coot-application.cc: In function 'int start_using_application(int, char**)': coot-application.cc:103:69: warning: 'G_APPLICATION_FLAGS_NONE' is deprecated: Use 'G_APPLICATION_DEFAULT_FLAGS' instead [-Wdeprecated-declarations] 103 | GtkApplication *app = gtk_application_new ("org.emsley.coot", G_APPLICATION_FLAGS_NONE); | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gio/giotypes.h:30, from /usr/include/glib-2.0/gio/gio.h:28, from /usr/include/gtk-4.0/gtk/css/gtkcsssection.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:36, from /usr/include/gtk-4.0/gtk/gtk.h:29: /usr/include/glib-2.0/gio/gioenums.h:1545:3: note: declared here 1545 | G_APPLICATION_FLAGS_NONE GIO_DEPRECATED_ENUMERATOR_IN_2_74_FOR(G_APPLICATION_DEFAULT_FLAGS), | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cfc-widgets.hh:28, from cfc.cc:40: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-setup-python.lo coot-setup-python.cc swig -o coot_wrap_guile_pre.cc -DUSE_MOLECULES_TO_TRIANGLES -DCOOT_USE_GTK2_INTERFACE -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_LIBCURL -I../src -I.. -guile -c++ ../src/coot.i /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 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-Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c draw.cc -fPIC -DPIC -o .libs/draw.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-tick-function.cc -fPIC -DPIC -o .libs/graphics-info-tick-function.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o drag-and-drop.lo drag-and-drop.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-hydrogens.cc:28: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c drag-and-drop.cc -fPIC -DPIC -o .libs/drag-and-drop.o In file included from command-arg.hh:33, from graphics-info.h:66, from coot_pythonmodule.cc:123: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o draw-generic-display-objects.lo draw-generic-display-objects.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dynamic-validation.lo dynamic-validation.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c draw-generic-display-objects.cc -fPIC -DPIC -o .libs/draw-generic-display-objects.o In file included from cc-interface.hh:37, from coot-setup-python.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dynamic-validation.cc -fPIC -DPIC -o .libs/dynamic-validation.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o eyes.lo eyes.cc In file included from curlew-gtk4.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o event-controller-callbacks.lo event-controller-callbacks.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c eyes.cc -fPIC -DPIC -o .libs/eyes.o In file included from cc-interface.hh:37, from drag-and-drop.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fit-loop-gui.lo fit-loop-gui.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c event-controller-callbacks.cc -fPIC -DPIC -o .libs/event-controller-callbacks.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fit-loop-gui.cc -fPIC -DPIC -o .libs/fit-loop-gui.o In file included from draw-generic-display-objects.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from coot-setup-python.cc:41: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flev.lo flev.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from curlew-gtk4.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from draw.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from coot_pythonmodule.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flev.cc -fPIC -DPIC -o .libs/flev.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-tick-function.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o framebuffer.lo framebuffer.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c framebuffer.cc -fPIC -DPIC -o .libs/framebuffer.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from draw-generic-display-objects.cc:38: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from coot-setup-python.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ coot-setup-python.cc: In function 'void setup_python_basic(int, char**)': coot-setup-python.cc:71:17: warning: 'void PySys_SetArgv(int, wchar_t**)' is deprecated [-Wdeprecated-declarations] 71 | PySys_SetArgv(argc, _argv); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/python3.13/Python.h:125, from coot-setup-python.cc:24: /usr/include/python3.13/sysmodule.h:10:38: note: declared here 10 | Py_DEPRECATED(3.11) PyAPI_FUNC(void) PySys_SetArgv(int, wchar_t **); | ^~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from event-controller-callbacks.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from fit-loop-gui.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from dynamic-validation.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o old-generic-display-object.lo old-generic-display-object.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from curlew-gtk4.hh:29, from curlew-gtk4.cc:29: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-tick-function.cc:38: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c old-generic-display-object.cc -fPIC -DPIC -o .libs/old-generic-display-object.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gaussian-surface.lo gaussian-surface.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from probe-clash-score.hh:32, from ligand-check.hh:30, from c-interface-ligands.hh:34, from flev.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o generic-objects.lo generic-objects.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gaussian-surface.cc -fPIC -DPIC -o .libs/gaussian-surface.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c generic-objects.cc -fPIC -DPIC -o .libs/generic-objects.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from c-interface-ligands.hh:35: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from event-controller-callbacks.hh:29, from event-controller-callbacks.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from flev.cc:39: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ event-controller-callbacks.cc: In lambda function: event-controller-callbacks.cc:168:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 168 | gtk_widget_get_allocation(gl_area, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In member function 'void graphics_info_t::do_drag_pan_gtk4(GtkWidget*, double, double)': event-controller-callbacks.cc:487:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 487 | gtk_widget_get_allocation(widget, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In member function 'void graphics_info_t::do_drag_pan_gtk3(GtkWidget*, double, double)': event-controller-callbacks.cc:561:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 561 | gtk_widget_get_allocation(widget, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ event-controller-callbacks.cc: In member function 'void graphics_info_t::on_glarea_motion(GtkEventControllerMotion*, gdouble, gdouble, gpointer)': event-controller-callbacks.cc:812:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 812 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from widget-from-builder.hh:31, from fit-loop-gui.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ fit-loop-gui.cc: In function 'void fit_loop_using_dialog()': fit-loop-gui.cc:184:64: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 184 | std::string chain_id = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(chain_combobox_text)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ draw-generic-display-objects.cc: In static member function 'static void graphics_info_t::draw_generic_objects(unsigned int)': draw-generic-display-objects.cc:213:47: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 213 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o geometry-graphs.lo geometry-graphs.cc In file included from cc-interface.hh:37, from gaussian-surface.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from flev.cc:41: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from old-generic-display-object.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-residue.lo get-residue.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-residue.cc -fPIC -DPIC -o .libs/get-residue.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c geometry-graphs.cc -fPIC -DPIC -o .libs/geometry-graphs.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-monomer.lo get-monomer.cc In file included from cc-interface.hh:37, from generic-objects.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-monomer.cc -fPIC -DPIC -o .libs/get-monomer.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from gaussian-surface.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gl-rama-plot.lo gl-rama-plot.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from generic-objects.cc:50: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gl-rama-plot.cc -fPIC -DPIC -o .libs/gl-rama-plot.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from get-monomer.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o globjects.lo globjects.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c globjects.cc -fPIC -DPIC -o .libs/globjects.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o globularize.lo globularize.cc In file included from gl-rama-plot.cc:329: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info.lo graphics-info.cc gl-rama-plot.cc: In member function 'std::pair, glm::vec<2, float, glm::packed_highp> > gl_rama_plot_t::get_munged_offset_and_scale(screen_position_origins_t, const glm::vec2&, float, float, int, int) const': gl-rama-plot.cc:418:82: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 418 | int glarea_width, int glarea_height) const { | ^~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-defines.lo graphics-info-defines.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c globularize.cc -fPIC -DPIC -o .libs/globularize.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info.cc -fPIC -DPIC -o .libs/graphics-info.o In file included from command-arg.hh:33, from graphics-info.h:66, from get-residue.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-defines.cc -fPIC -DPIC -o .libs/graphics-info-defines.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from generic-objects.cc:40: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from get-monomer.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-defines-gtk4.lo graphics-info-defines-gtk4.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-draw.lo graphics-info-draw.cc In file included from cc-interface.hh:39, from flev.cc:57: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-defines-gtk4.cc -fPIC -DPIC -o .libs/graphics-info-defines-gtk4.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-draw.cc -fPIC -DPIC -o .libs/graphics-info-draw.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-draw-models.lo graphics-info-draw-models.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info.cc:64: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-draw-models.cc -fPIC -DPIC -o .libs/graphics-info-draw-models.o In file included from cc-interface.hh:39, from get-monomer.cc:34: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from globularize.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info.cc:72: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-graphs.lo graphics-info-graphs.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-graphs.cc -fPIC -DPIC -o .libs/graphics-info-graphs.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-defines-gtk4.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-defines.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-draw.cc:48: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-gui.lo graphics-info-gui.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info.cc:43: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-gui.cc -fPIC -DPIC -o .libs/graphics-info-gui.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:39, from graphics-info.cc:97: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-draw-models.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-init.lo graphics-info-init.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-init.cc -fPIC -DPIC -o .libs/graphics-info-init.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-graphs.cc:51: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-draw.cc:43: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static glm::mat4 graphics_info_t::get_molecule_mvp(bool)': graphics-info-draw.cc:632:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 632 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static glm::vec4 graphics_info_t::unproject(float)': graphics-info-draw.cc:722:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 722 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_intermediate_atoms(unsigned int)': graphics-info-draw.cc:1041:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1041 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In lambda function: graphics-info-draw.cc:1665:107: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 1665 | return std::pair(offset_rel, scales_new); | ^ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_refinement_dialog_arrow_tab()': graphics-info-draw.cc:1678:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1678 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_colour_bar()': graphics-info-draw.cc:1712:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1712 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_meshed_generic_display_object_meshes(unsigned int)': graphics-info-draw.cc:2222:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 2222 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_molecules_other_meshes(unsigned int)': graphics-info-draw.cc:2380:47: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 2380 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'void graphics_info_t::setup_hud_geometry_bars()': graphics-info-draw.cc:3020:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3020 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_buttons()': graphics-info-draw.cc:3240:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3240 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_ramachandran_plot()': graphics-info-draw.cc:3304:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3304 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In lambda function: graphics-info-draw.cc:3345:67: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3345 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'void graphics_info_t::show_accept_reject_hud_buttons()': graphics-info-draw.cc:3517:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3517 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'void graphics_info_t::reset_hud_buttons_size_and_position()': graphics-info-draw.cc:3629:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3629 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static float graphics_info_t::get_x_base_for_hud_geometry_bars()': graphics-info-draw.cc:3645:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3645 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_geometry_bars()': graphics-info-draw.cc:3670:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 3670 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'std::pair graphics_info_t::check_if_hud_bar_moused_over_or_act_on_hud_bar_clicked(double, double, bool)': graphics-info-draw.cc:4008:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4008 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In member function 'bool graphics_info_t::check_if_hud_button_moused_over_or_act_on_hit(double, double, bool, bool)': graphics-info-draw.cc:4339:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4339 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_geometry_tooltip()': graphics-info-draw.cc:4420:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4420 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-info-draw.cc:4435: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ graphics-info-draw.cc: In lambda function: graphics-info-draw.cc:4612:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4612 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_bad_nbc_atom_pair_markers(unsigned int)': graphics-info-draw.cc:5481:38: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 5481 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_chiral_volume_outlier_markers(unsigned int)': graphics-info-draw.cc:5531:48: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 5531 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_ligand_view()': graphics-info-draw.cc:5724:38: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 5724 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_extra_distance_restraints(int)': graphics-info-draw.cc:6164:38: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 6164 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-intermediate.lo graphics-info-intermediate.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-modelling.lo graphics-info-modelling.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-graphs.cc:60: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info-draw-models.cc: In static member function 'static void graphics_info_t::draw_models_for_ssao()': graphics-info-draw-models.cc:37:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 37 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-draw-models.cc: In static member function 'static void graphics_info_t::draw_molecules_for_ssao()': graphics-info-draw-models.cc:58:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 58 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-gui.cc:63: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-intermediate.cc -fPIC -DPIC -o .libs/graphics-info-intermediate.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-modelling.cc -fPIC -DPIC -o .libs/graphics-info-modelling.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-gui.cc:71: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-navigation.lo graphics-info-navigation.cc In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-init.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-navigation.cc -fPIC -DPIC -o .libs/graphics-info-navigation.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info-graphs.cc:24: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from graphics-info-graphs.cc:83: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info-graphs.cc: In lambda function: graphics-info-graphs.cc:97:60: warning: 'gboolean gtk_list_store_remove(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 97 | return ! gtk_list_store_remove(list,iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:95:15: note: declared here 95 | gboolean gtk_list_store_remove (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc: In static member function 'static void graphics_info_t::refresh_validation_graph_model_list()': graphics-info-graphs.cc:93:26: warning: 'void gtk_tree_model_foreach(GtkTreeModel*, GtkTreeModelForeachFunc, gpointer)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 93 | gtk_tree_model_foreach( | ~~~~~~~~~~~~~~~~~~~~~~^ 94 | GTK_TREE_MODEL(validation_graph_model_list), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 | +[](GtkTreeModel* model, GtkTreePath* path, GtkTreeIter* iter, gpointer data) -> gboolean { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | GtkListStore* list = GTK_LIST_STORE(model); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 | return ! gtk_list_store_remove(list,iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 | }, | ~~ 99 | NULL | ~~~~ 100 | ); | ~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:379:19: note: declared here 379 | void gtk_tree_model_foreach (GtkTreeModel *model, | ^~~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:107:31: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 107 | gtk_list_store_append(validation_graph_model_list, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:108:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 108 | gtk_list_store_set(validation_graph_model_list, &iter, 0, label.c_str(), 1, i, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc: In lambda function: graphics-info-graphs.cc:169:45: warning: 'gboolean gtk_list_store_remove(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 169 | return gboolean(!gtk_list_store_remove(list,iter)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:95:15: note: declared here 95 | gboolean gtk_list_store_remove (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc: In static member function 'static void graphics_info_t::refresh_ramachandran_plot_model_list()': graphics-info-graphs.cc:172:26: warning: 'void gtk_tree_model_foreach(GtkTreeModel*, GtkTreeModelForeachFunc, gpointer)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 172 | gtk_tree_model_foreach(GTK_TREE_MODEL(ramachandran_plot_model_list), fn, NULL); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:379:19: note: declared here 379 | void gtk_tree_model_foreach (GtkTreeModel *model, | ^~~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:179:31: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 179 | gtk_list_store_append(ramachandran_plot_model_list, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-graphs.cc:180:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 180 | gtk_list_store_set(ramachandran_plot_model_list, &iter, 0, label.c_str(), 1, i, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-navigation-gtk2.lo graphics-info-navigation-gtk2.cc graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_refinement_dialog_arrow_tab()': graphics-info-draw.cc:1686:105: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 1686 | auto p_s = get_munged_offset_and_scale(HUDTextureMesh::TOP_RIGHT, position_natural, 1.0, 1.0, w, h); | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-preferences.lo graphics-info-preferences.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-navigation-gtk2.cc -fPIC -DPIC -o .libs/graphics-info-navigation-gtk2.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-gui.cc:42: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::show_refinement_and_regularization_parameters_frame()': graphics-info-gui.cc:136:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 136 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(overall_weight_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:142:37: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 142 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(overall_weight_combobox), t.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:144:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 144 | gtk_combo_box_set_active(GTK_COMBO_BOX(overall_weight_combobox), 4); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::add_status_bar_text(const std::string&)': graphics-info-gui.cc:334:28: warning: 'guint gtk_statusbar_push(GtkStatusbar*, guint, const char*)' is deprecated [-Wdeprecated-declarations] 334 | gtk_statusbar_push(GTK_STATUSBAR(statusbar), statusbar_context_id, sbt.c_str()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:263: /usr/include/gtk-4.0/gtk/deprecated/gtkstatusbar.h:50:12: note: declared here 50 | guint gtk_statusbar_push (GtkStatusbar *statusbar, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::save_directory_from_filechooser(const GtkWidget*)': graphics-info-gui.cc:357:49: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 357 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::save_directory_for_saving_from_filechooser(const GtkWidget*)': graphics-info-gui.cc:376:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 376 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::set_file_for_save_filechooser(GtkWidget*) const': graphics-info-gui.cc:464:35: warning: 'gboolean gtk_file_chooser_set_file(GtkFileChooser*, GFile*, GError**)' is deprecated [-Wdeprecated-declarations] 464 | gtk_file_chooser_set_file(GTK_FILE_CHOOSER(filechooser), file, &error); // deprecated | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:121:22: note: declared here 121 | gboolean gtk_file_chooser_set_file (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:476:43: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 476 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(filechooser), stripped_name.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'GtkWidget* graphics_info_t::dialog_box_of_buttons_internal(const std::string&, const std::vector, std::allocator >, void (*)(), void*> >&, const std::string&)': graphics-info-gui.cc:664:38: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 664 | GtkWidget *dialog = gtk_dialog_new(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ graphics-info-gui.cc:668:55: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 668 | GtkWidget *vbox_outer = gtk_dialog_get_content_area(GTK_DIALOG(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-preferences.cc -fPIC -DPIC -o .libs/graphics-info-preferences.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-network.lo graphics-info-network.cc graphics-info-gui.cc:694:25: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 694 | gtk_dialog_add_button(GTK_DIALOG(dialog), close_button_label.c_str(), GTK_RESPONSE_CLOSE); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::new_fill_combobox_with_coordinates_options(GtkWidget*, GCallback, int)': graphics-info-gui.cc:1778:51: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1778 | GtkTreeModel *model_1 = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1784:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1784 | GtkListStore *store = gtk_list_store_new(2, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1788:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 1788 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1795:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1795 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1796:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1796 | gtk_list_store_set(store, &iter, 0, imol, 1, ss.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1800:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 1800 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1801:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 1801 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox_molecule), renderer, true); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1802:34: warning: 'void gtk_cell_layout_set_attributes(GtkCellLayout*, GtkCellRenderer*, ...)' is deprecated [-Wdeprecated-declarations] 1802 | gtk_cell_layout_set_attributes(GTK_CELL_LAYOUT(combobox_molecule), renderer, "text", 1, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:125:7: note: declared here 125 | void gtk_cell_layout_set_attributes (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1803:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1803 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox_molecule), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1812:34: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1812 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox_molecule), imol_active); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1813:96: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1813 | std::cout << "!!!!!!!!!!! combobox get_active() returns " << gtk_combo_box_get_active(GTK_COMBO_BOX(combobox_molecule)) << std::endl; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::fill_combobox_with_molecule_options(GtkWidget*, GCallback, int, const std::vector&)': graphics-info-gui.cc:1835:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 1835 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1837:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1837 | GtkListStore *store = gtk_list_store_new(2, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1857:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1857 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1858:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1858 | gtk_list_store_set(store, &iter, 0, imol, 1, ss.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1867:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 1867 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1868:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 1868 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox), renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1869:35: warning: 'void gtk_cell_layout_set_attributes(GtkCellLayout*, GtkCellRenderer*, ...)' is deprecated [-Wdeprecated-declarations] 1869 | gtk_cell_layout_set_attributes (GTK_CELL_LAYOUT(combobox), renderer, "text", 1, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:125:7: note: declared here 125 | void gtk_cell_layout_set_attributes (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1870:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1870 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1874:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1874 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), active_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::fill_combobox_with_coordinates_options(GtkWidget*, GCallback, int)': graphics-info-gui.cc:1902:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1902 | GtkListStore *store = gtk_list_store_new(2, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1923:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1923 | gtk_list_store_append(store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1924:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1924 | gtk_list_store_set(store, &iter, 0, imol, 1, ss.c_str(), -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1936:58: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 1936 | GtkCellRenderer *renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1937:30: warning: 'void gtk_cell_layout_pack_start(GtkCellLayout*, GtkCellRenderer*, gboolean)' is deprecated [-Wdeprecated-declarations] 1937 | gtk_cell_layout_pack_start(GTK_CELL_LAYOUT(combobox), renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:113:7: note: declared here 113 | void gtk_cell_layout_pack_start (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1938:35: warning: 'void gtk_cell_layout_set_attributes(GtkCellLayout*, GtkCellRenderer*, ...)' is deprecated [-Wdeprecated-declarations] 1938 | gtk_cell_layout_set_attributes (GTK_CELL_LAYOUT(combobox), renderer, "text", 1, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:125:7: note: declared here 125 | void gtk_cell_layout_set_attributes (GtkCellLayout *cell_layout, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1939:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1939 | gtk_combo_box_set_model(GTK_COMBO_BOX(combobox), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:1945:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1945 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), active_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'void graphics_info_t::fill_combobox_with_undo_options(GtkWidget*)': graphics-info-gui.cc:2192:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 2192 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox_molecule)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': graphics-info-gui.cc:3101:50: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { | ^ graphics-info-gui.cc: In static member function 'static void graphics_info_t::fill_bond_parameters_internals(GtkWidget*, int)': graphics-info-gui.cc:3652:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 3652 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(bond_width_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3668:32: warning: 'void gtk_combo_box_text_append(GtkComboBoxText*, const char*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 3668 | gtk_combo_box_text_append(GTK_COMBO_BOX_TEXT(bond_width_combobox), nullptr, s.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:65:15: note: declared here 65 | void gtk_combo_box_text_append (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3673:31: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3673 | gtk_combo_box_set_active(GTK_COMBO_BOX(bond_width_combobox), idx_active); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::bond_parameters_bond_width_combobox_changed(GtkWidget*, gpointer)': graphics-info-gui.cc:3747:37: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3747 | int id = gtk_combo_box_get_active(GTK_COMBO_BOX(bond_width_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::string graphics_info_t::get_active_label_in_comboboxtext(GtkComboBoxText*)': graphics-info-gui.cc:3956:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 3956 | gchar *at = gtk_combo_box_text_get_active_text(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::string graphics_info_t::get_active_label_in_combobox(GtkComboBox*) const': graphics-info-gui.cc:3967:49: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3967 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3969:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 3969 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:3973:31: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 3973 | gtk_tree_model_get_value(model, &iter, 0, &f_label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static std::string graphics_info_t::fill_combobox_with_chain_options(GtkWidget*, int, GCallback, const std::string&)': graphics-info-gui.cc:4015:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4015 | gtk_combo_box_text_remove_all(cb_as_text); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:4022:40: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 4022 | gtk_combo_box_text_append_text(cb_as_text, ch_id.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc:4024:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 4024 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox_text), i); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4509:46: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4509 | graphics_info_t::get_pointer_position_frac() const { | ^~~~~ graphics-info-gui.cc:4516:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4516 | gtk_widget_get_allocation(glarea, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-network.cc -fPIC -DPIC -o .libs/graphics-info-network.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-modelling.cc:65: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-mutate.lo graphics-info-mutate.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-init.cc: In member function 'void graphics_info_t::init()': graphics-info-init.cc:485:55: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 485 | validation_graph_model_list = gtk_list_store_new(2,G_TYPE_STRING,G_TYPE_INT); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-init.cc:488:56: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 488 | ramachandran_plot_model_list = gtk_list_store_new(2,G_TYPE_STRING,G_TYPE_INT); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-intermediate.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-mutate.cc -fPIC -DPIC -o .libs/graphics-info-mutate.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-navigation.cc:54: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-modelling.cc:80: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': graphics-info-gui.cc:3101:1: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { | ^~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4509:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4509 | graphics_info_t::get_pointer_position_frac() const { | ^~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-navigation-gtk2.cc:42: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-navigation.cc:61: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-network.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-mutate.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-modelling.cc:48: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-navigation.cc:48: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:39, from graphics-info-navigation.cc:63: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-preferences.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info-navigation.cc: In member function 'void graphics_info_t::update_go_to_atom_window_on_new_mol()': graphics-info-navigation.cc:825:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 825 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc: In member function 'void graphics_info_t::update_go_to_atom_window_on_other_molecule_chosen(int)': graphics-info-navigation.cc:874:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 874 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc: In static member function 'static void graphics_info_t::go_to_atom_mol_combobox_changed(GtkWidget*, gpointer)': graphics-info-navigation.cc:949:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 949 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:951:52: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 951 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:953:31: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 953 | gtk_tree_model_get_value(model, &iter, 0, &label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc: In member function 'int graphics_info_t::combobox_get_imol(GtkComboBox*) const': graphics-info-navigation.cc:982:53: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 982 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:984:55: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 984 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation.cc:989:37: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 989 | gtk_tree_model_get_value(model, &iter, 0, &label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': graphics-info-gui.cc:3101:1: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { | ^~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info-modelling.cc: In static member function 'static void graphics_info_t::move_molecule_here_combobox_changed(GtkWidget*, gpointer)': graphics-info-modelling.cc:5576:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 5576 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-modelling.cc:5578:52: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 5578 | GtkTreeModel *model = gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-modelling.cc:5580:31: warning: 'void gtk_tree_model_get_value(GtkTreeModel*, GtkTreeIter*, int, GValue*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 5580 | gtk_tree_model_get_value(model, &iter, 0, &label_as_value); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-mutate.cc:61: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4509:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4509 | graphics_info_t::get_pointer_position_frac() const { | ^~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-navigation-gtk2.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:26, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcssenumtypes.h:11, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:33, from /usr/include/gtk-4.0/gtk/gtk.h:29: graphics-info-navigation-gtk2.cc: In lambda function: graphics-info-navigation-gtk2.cc:177:98: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 177 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:177:67: note: in expansion of macro 'GTK_TREE_VIEW' 177 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In lambda function: graphics-info-navigation-gtk2.cc:195:56: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 195 | atom_list = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:195:25: note: in expansion of macro 'GTK_TREE_VIEW' 195 | atom_list = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::fill_go_to_atom_window_residue_and_atom_lists_gtk4()': graphics-info-navigation-gtk2.cc:228:43: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 228 | tv = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:228:12: note: in expansion of macro 'GTK_TREE_VIEW' 228 | tv = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:230:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 230 | GtkTreeModel *model = gtk_tree_view_get_model(tv); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:234:27: warning: 'void gtk_tree_store_clear(GtkTreeStore*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 234 | gtk_tree_store_clear(GTK_TREE_STORE(model)); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:292: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:142:15: note: declared here 142 | void gtk_tree_store_clear (GtkTreeStore *tree_store); | ^~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:254:50: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 254 | GtkTreeStore *tree_store = gtk_tree_store_new (2, G_TYPE_STRING, G_TYPE_POINTER); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:258:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 258 | gtk_tree_view_set_model(GTK_TREE_VIEW(gtktree), GTK_TREE_MODEL(tree_store)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:261:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 261 | gtk_tree_store_append(GTK_TREE_STORE(tree_store), &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:265:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 265 | gtk_tree_store_set (tree_store, &toplevel, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 266 | CHAIN_COL, residue_chains[ichain].chain_id.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 | RESIDUE_COL, NULL, | ~~~~~~~~~~~~~~~~~~ 268 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:275:31: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 275 | gtk_tree_store_append(GTK_TREE_STORE(tree_store), &child, &toplevel); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:280:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 280 | gtk_tree_store_set(tree_store, &child, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 281 | CHAIN_COL, lab.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~ 282 | RESIDUE_COL, res_spec_ptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:288:66: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 288 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:290:76: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new_with_attributes(const char*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 290 | GtkTreeViewColumn *column = gtk_tree_view_column_new_with_attributes ("Chains", cell_renderer, "markup", 0, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:87:25: note: declared here 87 | GtkTreeViewColumn *gtk_tree_view_column_new_with_attributes (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:293:34: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 293 | gtk_tree_view_append_column(GTK_TREE_VIEW (tv), GTK_TREE_VIEW_COLUMN (column)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:295:66: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 295 | GtkTreeSelection* tree_sel = gtk_tree_view_get_selection (tv); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:296:34: warning: 'void gtk_tree_selection_set_mode(GtkTreeSelection*, GtkSelectionMode)' is deprecated [-Wdeprecated-declarations] 296 | gtk_tree_selection_set_mode(tree_sel, GTK_SELECTION_SINGLE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:290: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:76:18: note: declared here 76 | void gtk_tree_selection_set_mode (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:300:45: warning: 'void gtk_tree_selection_set_select_function(GtkTreeSelection*, GtkTreeSelectionFunc, gpointer, GDestroyNotify)' is deprecated [-Wdeprecated-declarations] 300 | gtk_tree_selection_set_select_function(tree_sel, residue_tree_selection_func, NULL, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:81:18: note: declared here 81 | void gtk_tree_selection_set_select_function (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:307:52: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 307 | GtkTreeModel *model = gtk_tree_view_get_model(GTK_TREE_VIEW(atom_list)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:310:30: warning: 'void gtk_list_store_clear(GtkListStore*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 310 | gtk_list_store_clear(list_store); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:128:15: note: declared here 128 | void gtk_list_store_clear (GtkListStore *list_store); | ^~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In lambda function: graphics-info-navigation-gtk2.cc:332:98: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 332 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:332:67: note: in expansion of macro 'GTK_TREE_VIEW' 332 | residue_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static gboolean graphics_info_t::residue_tree_selection_func(GtkTreeSelection*, GtkTreeModel*, GtkTreePath*, gboolean, gpointer)': graphics-info-navigation-gtk2.cc:420:32: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 420 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:422:26: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 422 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:432:35: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 432 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &residue_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::residue_tree_residue_row_activated(GtkTreeView*, GtkTreePath*, GtkTreeViewColumn*, gpointer)': graphics-info-navigation-gtk2.cc:487:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 487 | GtkTreeModel *model = gtk_tree_view_get_model(treeview); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:490:32: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 490 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:492:26: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 492 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:499:32: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 499 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &residue_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::fill_go_to_atom_atom_list_gtk2(GtkWidget*, int, char*, int, char*)': graphics-info-navigation-gtk2.cc:581:50: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 581 | atom_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ~~~~~~~~~~~~~~~~~^~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:53:40: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 53 | #define GTK_TREE_VIEW(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_VIEW, GtkTreeView)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:581:19: note: in expansion of macro 'GTK_TREE_VIEW' 581 | atom_tree = GTK_TREE_VIEW(gtk_tree_view_new()); | ^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:594:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 594 | GtkTreeModel *model = gtk_tree_view_get_model(atom_tree); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:596:39: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 596 | list_store = gtk_list_store_new (2, G_TYPE_STRING, G_TYPE_POINTER); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:600:27: warning: 'void gtk_list_store_clear(GtkListStore*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 600 | gtk_list_store_clear(list_store); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:128:15: note: declared here 128 | void gtk_list_store_clear (GtkListStore *list_store); | ^~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:605:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 605 | gtk_tree_view_set_model(GTK_TREE_VIEW(atom_tree), GTK_TREE_MODEL(list_store)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:609:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 609 | gtk_list_store_append(GTK_LIST_STORE(list_store), &toplevel); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:610:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 610 | gtk_list_store_set(GTK_LIST_STORE(list_store), &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 | CHAIN_COL, atoms[iatom].button_label.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 | RESIDUE_COL, (gpointer) atoms[iatom].atom, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:617:57: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 617 | GtkCellRenderer *cell = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:619:51: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new_with_attributes(const char*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 619 | gtk_tree_view_column_new_with_attributes ("Atoms", cell, "text", 0, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:87:25: note: declared here 87 | GtkTreeViewColumn *gtk_tree_view_column_new_with_attributes (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:620:35: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 620 | gtk_tree_view_append_column (GTK_TREE_VIEW (atom_tree), GTK_TREE_VIEW_COLUMN (column)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:622:66: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 622 | GtkTreeSelection* tree_sel = gtk_tree_view_get_selection (atom_tree); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:623:34: warning: 'void gtk_tree_selection_set_mode(GtkTreeSelection*, GtkSelectionMode)' is deprecated [-Wdeprecated-declarations] 623 | gtk_tree_selection_set_mode(tree_sel, GTK_SELECTION_SINGLE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:76:18: note: declared here 76 | void gtk_tree_selection_set_mode (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:626:46: warning: 'void gtk_tree_selection_set_select_function(GtkTreeSelection*, GtkTreeSelectionFunc, gpointer, GDestroyNotify)' is deprecated [-Wdeprecated-declarations] 626 | gtk_tree_selection_set_select_function (tree_sel, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 627 | graphics_info_t::atom_tree_selection_func, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 | NULL, NULL); | ~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:81:18: note: declared here 81 | void gtk_tree_selection_set_select_function (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static void graphics_info_t::atom_tree_atom_row_activated(GtkTreeView*, GtkTreePath*, GtkTreeViewColumn*, gpointer)': graphics-info-navigation-gtk2.cc:642:49: warning: 'GtkTreeModel* gtk_tree_view_get_model(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 642 | GtkTreeModel *model = gtk_tree_view_get_model(treeview); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:199:24: note: declared here 199 | GtkTreeModel *gtk_tree_view_get_model (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:645:31: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 645 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:647:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 647 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:654:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 654 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &atom_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc: In static member function 'static gboolean graphics_info_t::atom_tree_selection_func(GtkTreeSelection*, GtkTreeModel*, GtkTreePath*, gboolean, gpointer)': graphics-info-navigation-gtk2.cc:688:31: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 688 | if (gtk_tree_model_get_iter(model, &iter, path)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:690:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 690 | gtk_tree_model_get(model, &iter, CHAIN_COL, &name, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-navigation-gtk2.cc:697:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 697 | gtk_tree_model_get(model, &iter, RESIDUE_COL, &atom_data, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-mutate.cc:58: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-lsq.lo graphics-info-lsq.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-preferences.cc:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-lsq.cc -fPIC -DPIC -o .libs/graphics-info-lsq.o In file included from cc-interface.hh:39, from graphics-info-preferences.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info-preferences.cc: In static member function 'static void graphics_info_t::preferences_toolbar_icon_toggled(GtkCellRendererToggle*, gchar*, gpointer, int)': graphics-info-preferences.cc:712:53: warning: 'GtkTreePath* gtk_tree_path_new_from_string(const char*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 712 | GtkTreePath *path = gtk_tree_path_new_from_string (path_string); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:201:14: note: declared here 201 | GtkTreePath *gtk_tree_path_new_from_string (const char *path); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:716:26: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 716 | gtk_tree_model_get_iter(model, &iter, path); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:717:21: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 717 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 718 | 0, &value, | ~~~~~~~~~~ 719 | 3, &icon_pos, -1); | ~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:722:22: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 722 | gtk_list_store_set (GTK_LIST_STORE (model), &iter, 0, value, -1); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:730:22: warning: 'void gtk_tree_path_free(GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 730 | gtk_tree_path_free (path); | ~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:228:14: note: declared here 228 | void gtk_tree_path_free (GtkTreePath *path); | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc: In member function 'void graphics_info_t::fill_preferences_toolbar_icons(GtkWidget*, GtkWidget*, int)': graphics-info-preferences.cc:775:45: warning: 'GtkWidget* gtk_tree_view_new()' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 775 | GtkWidget *icons_tree = gtk_tree_view_new(); | ~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:193:24: note: declared here 193 | GtkWidget *gtk_tree_view_new (void); | ^~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:776:37: warning: 'void gtk_tree_view_set_headers_visible(GtkTreeView*, gboolean)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 776 | gtk_tree_view_set_headers_visible(GTK_TREE_VIEW(icons_tree), FALSE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:209:24: note: declared here 209 | void gtk_tree_view_set_headers_visible (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/gobject/gobject.h:26, from /usr/include/glib-2.0/gobject/gbinding.h:31, from /usr/include/glib-2.0/glib-object.h:24, from /usr/include/gtk-4.0/gtk/css/gtkcssenumtypes.h:11, from /usr/include/gtk-4.0/gtk/css/gtkcss.h:33, from /usr/include/gtk-4.0/gtk/gtk.h:29: graphics-info-preferences.cc:790:59: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 790 | GtkTreeModel *model = GTK_TREE_MODEL(gtk_list_store_new(4, G_TYPE_BOOLEAN, GDK_TYPE_PIXBUF, G_TYPE_STRING, G_TYPE_INT)); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/gobject/gtype.h:2656:57: note: in definition of macro '_G_TYPE_CIC' 2656 | # define _G_TYPE_CIC(ip, gt, ct) ((ct*) (void *) ip) | ^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:30:41: note: in expansion of macro 'G_TYPE_CHECK_INSTANCE_CAST' 30 | #define GTK_TREE_MODEL(obj) (G_TYPE_CHECK_INSTANCE_CAST ((obj), GTK_TYPE_TREE_MODEL, GtkTreeModel)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:790:26: note: in expansion of macro 'GTK_TREE_MODEL' 790 | GtkTreeModel *model = GTK_TREE_MODEL(gtk_list_store_new(4, G_TYPE_BOOLEAN, GDK_TYPE_PIXBUF, G_TYPE_STRING, G_TYPE_INT)); | ^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:800:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 800 | gtk_tree_view_set_model(GTK_TREE_VIEW(icons_tree), model); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:802:41: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 802 | button_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:803:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 803 | icon_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:804:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 804 | text_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:809:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 809 | gtk_list_store_append(GTK_LIST_STORE(model), &toplevel); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:857:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 857 | gtk_list_store_set(GTK_LIST_STORE(model), &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | BUTTON_COL, "", | ~~~~~~~~~~~~~~~ 859 | ICON_COL, icon, | ~~~~~~~~~~~~~~~ 860 | TEXT_COL, item.icon_text.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 | INDEX_COL, item.icon_pos, | ~~~~~~~~~~~~~~~~~~~~~~~~~ 862 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:866:41: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 866 | button_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:867:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 867 | gtk_tree_view_append_column(GTK_TREE_VIEW(icons_tree), button_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:868:50: warning: 'GtkCellRenderer* gtk_cell_renderer_toggle_new()' is deprecated [-Wdeprecated-declarations] 868 | button_renderer = gtk_cell_renderer_toggle_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:77: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertoggle.h:40:18: note: declared here 40 | GtkCellRenderer *gtk_cell_renderer_toggle_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:869:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 869 | gtk_tree_view_column_pack_start(button_col, GTK_CELL_RENDERER(button_renderer), TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:871:39: warning: 'void gtk_tree_view_column_set_attributes(GtkTreeViewColumn*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 871 | gtk_tree_view_column_set_attributes(button_col, button_renderer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 | "active", BUTTON_COL, | ~~~~~~~~~~~~~~~~~~~~~ 873 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:106:25: note: declared here 106 | void gtk_tree_view_column_set_attributes (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:885:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 885 | icon_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:886:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 886 | gtk_tree_view_append_column(GTK_TREE_VIEW(icons_tree), icon_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:887:48: warning: 'GtkCellRenderer* gtk_cell_renderer_pixbuf_new()' is deprecated [-Wdeprecated-declarations] 887 | icon_renderer = gtk_cell_renderer_pixbuf_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:72: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendererpixbuf.h:39:18: note: declared here 39 | GtkCellRenderer *gtk_cell_renderer_pixbuf_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:888:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 888 | gtk_tree_view_column_pack_start(icon_col, icon_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:889:39: warning: 'void gtk_tree_view_column_set_attributes(GtkTreeViewColumn*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 889 | gtk_tree_view_column_set_attributes(icon_col, icon_renderer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 890 | "pixbuf", ICON_COL, | ~~~~~~~~~~~~~~~~~~~ 891 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:106:25: note: declared here 106 | void gtk_tree_view_column_set_attributes (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:894:39: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 894 | text_col = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:895:31: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 895 | gtk_tree_view_append_column(GTK_TREE_VIEW(icons_tree), text_col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:896:46: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 896 | text_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:897:35: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 897 | gtk_tree_view_column_pack_start(text_col, text_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:898:39: warning: 'void gtk_tree_view_column_set_attributes(GtkTreeViewColumn*, GtkCellRenderer*, ...)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 898 | gtk_tree_view_column_set_attributes(text_col, text_renderer, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 899 | "text", TEXT_COL, | ~~~~~~~~~~~~~~~~~ 900 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:106:25: note: declared here 106 | void gtk_tree_view_column_set_attributes (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc: In static member function 'static void graphics_info_t::update_toolbar_icons(GtkTreeModel*, int)': graphics-info-preferences.cc:987:36: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 987 | if (gtk_tree_model_get_iter_first(model, &iter)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:989:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 989 | gtk_tree_model_get(model, &iter, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 990 | 0, &button_value, | ~~~~~~~~~~~~~~~~~ 991 | 3, &col_index, -1); | ~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:997:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 997 | gtk_list_store_set (GTK_LIST_STORE (model), &iter, 0, 1, -1); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:1000:28: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 1000 | gtk_list_store_set (GTK_LIST_STORE (model), &iter, 0, 0, -1); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ graphics-info-preferences.cc:1003:38: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1003 | } while (gtk_tree_model_iter_next(model, &iter)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-opengl.lo graphics-info-opengl.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-pick.lo graphics-info-pick.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-refmac.lo graphics-info-refmac.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-render.lo graphics-info-render.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-opengl.cc -fPIC -DPIC -o .libs/graphics-info-opengl.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" 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-DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-pick.cc -fPIC -DPIC -o .libs/graphics-info-pick.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-render.cc -fPIC -DPIC -o .libs/graphics-info-render.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-render-scene.lo graphics-info-render-scene.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-render-scene.cc -fPIC -DPIC -o .libs/graphics-info-render-scene.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-residues.lo graphics-info-residues.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-refine.lo graphics-info-refine.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-residues.cc -fPIC -DPIC -o .libs/graphics-info-residues.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-refine.cc -fPIC -DPIC -o .libs/graphics-info-refine.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-lsq.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-pick.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-refmac.cc:71: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-info-render-scene.cc:27: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-opengl.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-lsq.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-refmac.cc:79: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-render.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-pick.cc:42: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-scripting.lo graphics-info-scripting.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-state.lo graphics-info-state.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-scripting.cc -fPIC -DPIC -o .libs/graphics-info-scripting.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-state.cc -fPIC -DPIC -o .libs/graphics-info-state.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-statics.lo graphics-info-statics.cc In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-refine.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-lsq.cc:39: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info-opengl.cc: In static member function 'static glm::vec4 graphics_info_t::unproject(float, float, float)': graphics-info-opengl.cc:350:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 350 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-residues.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from graphics-info-render-scene.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-statics.cc -fPIC -DPIC -o .libs/graphics-info-statics.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-refmac.cc:50: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-pick.cc:56: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:39, from graphics-info-render.cc:1203: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-render-scene.cc:36: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-render-scene.cc: In lambda function: graphics-info-render-scene.cc:731:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 731 | gtk_widget_get_allocation(gl_area, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-state.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-superpose.lo graphics-info-superpose.cc In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-scripting.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-superpose.cc -fPIC -DPIC -o .libs/graphics-info-superpose.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-statics.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-trackball.lo graphics-info-trackball.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-trackball.cc -fPIC -DPIC -o .libs/graphics-info-trackball.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from graphics-info-state.cc:34: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-state.cc:40: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from graphics-info-scripting.cc:35: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-ligand-view.lo graphics-ligand-view.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3906, from /usr/include/c++/14/math.h:36, from /usr/include/python3.13/Python.h:22, from graphics-info-statics.cc:28: /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': graphics-info-statics.cc:293:84: required from here 293 | std::pair graphics_info_t::mouse_previous_position = std::make_pair(0.0, 0.0); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-ligand-view.cc -fPIC -DPIC -o .libs/graphics-ligand-view.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-ligand-mesh-molecule.lo graphics-ligand-mesh-molecule.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-ligand-mesh-molecule.cc -fPIC -DPIC -o .libs/graphics-ligand-mesh-molecule.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-superpose.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-trackball.cc:57: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gl-matrix.lo gl-matrix.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-view.hh:21, from graphics-ligand-view.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtkglarea-rama-plot.lo gtkglarea-rama-plot.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gl-matrix.cc -fPIC -DPIC -o .libs/gl-matrix.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtkglarea-rama-plot.cc -fPIC -DPIC -o .libs/gtkglarea-rama-plot.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-manual.lo gtk-manual.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-manual.cc -fPIC -DPIC -o .libs/gtk-manual.o In file included from meshed-generic-display-object.hh:30, from coot-render.hh:40, from graphics-ligand-view.hh:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-widget-conversion-utils.lo gtk-widget-conversion-utils.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-utils.lo gtk-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-widget-conversion-utils.cc -fPIC -DPIC -o .libs/gtk-widget-conversion-utils.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o HUDMesh.lo HUDMesh.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c HUDMesh.cc -fPIC -DPIC -o .libs/HUDMesh.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-utils.cc -fPIC -DPIC -o .libs/gtk-utils.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o HUDTextureMesh.lo HUDTextureMesh.cc In file included from cc-interface.hh:37, from gtk-manual.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c HUDTextureMesh.cc -fPIC -DPIC -o .libs/HUDTextureMesh.o In file included from gtk-widget-conversion-utils.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Instanced-Markup-Mesh.lo Instanced-Markup-Mesh.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Instanced-Markup-Mesh.cc -fPIC -DPIC -o .libs/Instanced-Markup-Mesh.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o init-from-gtkbuilder.lo init-from-gtkbuilder.cc In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-ligand-mesh-molecule.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c init-from-gtkbuilder.cc -fPIC -DPIC -o .libs/init-from-gtkbuilder.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from Instanced-Markup-Mesh.cc:242: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-ligand-view.cc: In member function 'void graphics_ligand_bond::gl_bond_double_aromatic_bond(const lig_build::pos_t&, const lig_build::pos_t&, bool, bool)': graphics-ligand-view.cc:278:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 278 | make_double_aromatic_short_stick(pos_1, pos_2, shorten_first, shorten_second); | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from gtk-manual.cc:46: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from gtkglarea-rama-plot.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o key-bindings.lo key-bindings.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o LinesMesh.lo LinesMesh.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c key-bindings.cc -fPIC -DPIC -o .libs/key-bindings.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o LigandViewMesh.lo LigandViewMesh.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c LinesMesh.cc -fPIC -DPIC -o .libs/LinesMesh.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c LigandViewMesh.cc -fPIC -DPIC -o .libs/LigandViewMesh.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../src/command-arg.hh:33, from ../src/graphics-info.h:66, from gtk-utils.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from ../src/molecule-class-info.h:85, from ../src/graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-callbacks-outer.lo lbg-callbacks-outer.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-callbacks-outer.cc -fPIC -DPIC -o .libs/lbg-callbacks-outer.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-interface.lo lbg-interface.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.cc:35: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc: In function 'GtkWidget* create_symmetry_colour_selection_window()': gtk-manual.cc:97:49: warning: 'GtkWidget* gtk_color_chooser_dialog_new(const char*, GtkWindow*)' is deprecated [-Wdeprecated-declarations] 97 | colorseldialog = gtk_color_chooser_dialog_new("Symmetry Colour Selection", parent_window); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:84: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooserdialog.h:38:13: note: declared here 38 | GtkWidget * gtk_color_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc: In function 'void on_display_manager_selections_and_colours_combobox_changed(GtkComboBox*, gpointer)': gtk-manual.cc:320:51: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 320 | gchar *txt = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combo_box)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc: In function 'GtkWidget* selections_and_colours_combobox(int)': gtk-manual.cc:376:48: warning: 'GtkWidget* gtk_combo_box_text_new()' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 376 | GtkWidget *combobox = gtk_combo_box_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:38:15: note: declared here 38 | GtkWidget* gtk_combo_box_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:383:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 383 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Bonds (Colour by Atom)")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:384:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 384 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Bonds (Colour by Chain)")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:385:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 385 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Bonds (Colour by Molecule)")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:387:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 387 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("C-alphas/Backbone")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:388:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 388 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("CAs + Ligands")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:389:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 389 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("CAs+Ligs SecStr Col")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:390:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 390 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Jones' Rainbow")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:391:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 391 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by Sec. Str. Bonds")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:392:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 392 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by Atom - No Waters")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:393:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 393 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by B-factor - Backbone")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:394:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 394 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by B-factor - All")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:395:34: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 395 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox), ("Colour by Occupancy")); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gtk-manual.cc:447:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 447 | gtk_combo_box_set_active(GTK_COMBO_BOX(combobox), index); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Model.lo Model.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-interface.cc -fPIC -DPIC -o .libs/lbg-interface.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-a-dodec.lo make-a-dodec.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Model.cc -fPIC -DPIC -o .libs/Model.o In file included from ../src/molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o matrix-utils.lo matrix-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-a-dodec.cc -fPIC -DPIC -o .libs/make-a-dodec.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtkglarea-rama-plot.cc: In function 'void gtkgl_rama_on_glarea_render(GtkWidget*)': gtkglarea-rama-plot.cc:94:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 94 | gtk_widget_get_allocation(GTK_WIDGET(gtk_gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtkglarea-rama-plot.cc: In lambda function: gtkglarea-rama-plot.cc:130:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 130 | gtk_widget_get_allocation(gl_area, &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gtkglarea-rama-plot.cc: In static member function 'static void graphics_info_t::draw_rama_plots()': gtkglarea-rama-plot.cc:354:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 354 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh.lo Mesh.cc In file included from command-arg.hh:33, from graphics-info.h:66, from init-from-gtkbuilder.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c matrix-utils.cc -fPIC -DPIC -o .libs/matrix-utils.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh.cc -fPIC -DPIC -o .libs/Mesh.o In file included from ../src/graphics-ligand-mesh-molecule.hh:30, from ../src/graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ ../src/graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': ../src/graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../src/gtk-utils.hh:26, from gtk-utils.cc:24: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-glTF.lo Mesh-from-glTF.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds-instanced.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-graphical-bonds.lo Mesh-from-graphical-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-glTF.cc -fPIC -DPIC -o .libs/Mesh-from-glTF.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-graphical-bonds.cc -fPIC -DPIC -o .libs/Mesh-from-graphical-bonds.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-graphical-bonds-instanced.cc -fPIC -DPIC -o .libs/Mesh-from-graphical-bonds-instanced.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o meshed-generic-display-object.lo meshed-generic-display-object.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c meshed-generic-display-object.cc -fPIC -DPIC -o .libs/meshed-generic-display-object.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from Mesh-from-glTF.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecular-mesh-generator.hh:44, from Model.hh:39, from Model.cc:37: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecular-mesh-generator.hh:44, from Mesh-from-graphical-bonds.cc:703: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o model-molecule-meshes.lo model-molecule-meshes.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c model-molecule-meshes.cc -fPIC -DPIC -o .libs/model-molecule-meshes.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info.lo molecule-class-info.cc In file included from command-arg.hh:33, from graphics-info.h:66, from lbg-interface.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-alignment.lo molecule-class-info-alignment.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info.cc -fPIC -DPIC -o .libs/molecule-class-info.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-analysis.lo molecule-class-info-analysis.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-alignment.cc -fPIC -DPIC -o .libs/molecule-class-info-alignment.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-analysis.cc -fPIC -DPIC -o .libs/molecule-class-info-analysis.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-bonds.lo molecule-class-info-bonds.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-build.lo molecule-class-info-build.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-maps.lo molecule-class-info-maps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-bonds.cc -fPIC -DPIC -o .libs/molecule-class-info-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-build.cc -fPIC -DPIC -o .libs/molecule-class-info-build.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-maps.cc -fPIC -DPIC -o .libs/molecule-class-info-maps.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from meshed-generic-display-object.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-analysis.cc:28: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-alignment.cc:27: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info.cc:77: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from model-molecule-meshes.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-bonds.cc:22: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from lbg-interface.cc:39: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info.cc:90: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-build.cc:36: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-maps-2.lo molecule-class-info-maps-2.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-molecular-symmetry.lo molecule-class-info-molecular-symmetry.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-kdc.lo molecule-class-info-kdc.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-molecular-symmetry.cc -fPIC -DPIC -o .libs/molecule-class-info-molecular-symmetry.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-maps-2.cc -fPIC -DPIC -o .libs/molecule-class-info-maps-2.o In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-kdc.cc -fPIC -DPIC -o .libs/molecule-class-info-kdc.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-maps.cc:56: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.hh:29, from molecule-class-info.cc:80: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151, from molecule-class-info-bonds.cc:24: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-molecular-symmetry.cc:22: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-dots.lo molecule-class-info-dots.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-dots.cc -fPIC -DPIC -o .libs/molecule-class-info-dots.o In file included from ../coot-utils/coot-map-utils.hh:33, from ../api/coot-molecule.hh:75, from molecule-class-info.cc:120: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-kdc.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151, from molecule-class-info-maps.cc:79: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-maps-2.cc:26: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-maps.cc:88: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-dots-internal.lo molecule-class-info-dots-internal.cc In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-dots-internal.cc -fPIC -DPIC -o .libs/molecule-class-info-dots-internal.o In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3906, from /usr/include/c++/14/math.h:36, from /usr/include/python3.13/Python.h:22, from molecule-class-info.cc:25: /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = glm::vec<3, float, glm::packed_highp>; _T2 = float&; typename __strip_reference_wrapper::type>::__type = glm::vec<3, float, glm::packed_highp>; typename decay<_Tp>::type = glm::vec<3, float, glm::packed_highp>; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': molecule-class-info.cc:10781:54: required from here 10781 | positions[i] = std::make_pair(glm::vec3(p.x(), p.y(), p.z()), f); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair, float>' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-other.lo molecule-class-info-other.cc In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-other.cc -fPIC -DPIC -o .libs/molecule-class-info-other.o In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-mutate.lo molecule-class-info-mutate.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-mutate.cc -fPIC -DPIC -o .libs/molecule-class-info-mutate.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-residues.lo molecule-class-info-residues.cc In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-maps-2.cc:209: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-dots.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-residues.cc -fPIC -DPIC -o .libs/molecule-class-info-residues.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-refine.lo molecule-class-info-refine.cc In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/contrib/function_object_bases.h:50, from /usr/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:28, from molecule-class-info.h:105: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-refine.cc -fPIC -DPIC -o .libs/molecule-class-info-refine.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-other.cc:64: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-kk.lo molecule-class-info-kk.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-kk.cc -fPIC -DPIC -o .libs/molecule-class-info-kk.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-surface.lo molecule-class-info-surface.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-string.lo molecule-class-info-string.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-surface.cc -fPIC -DPIC -o .libs/molecule-class-info-surface.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-patterson.lo molecule-class-info-patterson.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-string.cc -fPIC -DPIC -o .libs/molecule-class-info-string.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-patterson.cc -fPIC -DPIC -o .libs/molecule-class-info-patterson.o In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-mutate.cc:52: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-refine.cc:36: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-other.cc:67: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-residues.cc:45: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-refine.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-string.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-kk.cc:25: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-ncs.lo molecule-class-info-ncs.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-other.cc:84: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-surface.cc:36: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-patterson.cc:45: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-ncs.cc -fPIC -DPIC -o .libs/molecule-class-info-ncs.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-mutate.cc:58: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-mol-tris.lo molecule-class-info-mol-tris.cc In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-surface.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-mol-tris.cc -fPIC -DPIC -o .libs/molecule-class-info-mol-tris.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-ncs.cc:45: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule&) const': molecule-class-info-other.cc:3894:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3894 | molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule &a_rotamer) const { | ^~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-ncs.cc:47: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/contrib/function_object_bases.h:50, from /usr/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:28, from molecule-class-info.h:105: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': molecule-class-info-patterson.cc:111:47: required from here 111 | clipper::data32::F_sigF f = fsig[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::I_sigI]': molecule-class-info-patterson.cc:196:24: required from here 196 | if (!isig[ih.hkl()].missing()) { | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::I_sigI' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ molecule-class-info-mutate.cc: In member function 'void molecule_class_info_t::spin_search(clipper::Xmap&, const std::string&, int, const std::string&, const std::pair, std::__cxx11::basic_string >&, const std::vector >&)': molecule-class-info-mutate.cc:1349:47: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1349 | float angle = coot::util::spin_search(xmap, res, tors).first; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ molecule-class-info-patterson.cc: In member function 'bool molecule_class_info_t::make_patterson(std::string, std::string, std::string, float)': molecule-class-info-patterson.cc:111:54: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 111 | clipper::data32::F_sigF f = fsig[ih.hkl()]; | ^ molecule-class-info-patterson.cc: In member function 'bool molecule_class_info_t::make_patterson_using_intensities(std::string, std::string, std::string, float)': molecule-class-info-patterson.cc:196:31: note: parameter passing for argument of type 'clipper::datatypes::I_sigI' when C++17 is enabled changed to match C++14 in GCC 10.1 196 | if (!isig[ih.hkl()].missing()) { | ~~~~~~~~~~~~~^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-widget-work.lo molecule-class-info-widget-work.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-widget-work.cc -fPIC -DPIC -o .libs/molecule-class-info-widget-work.o In file included from ../coot-utils/coot-map-utils.hh:33, from molecule-class-info-ncs.cc:49: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-geometry.lo molecule-class-info-geometry.cc In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-mol-tris.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-geometry.cc -fPIC -DPIC -o .libs/molecule-class-info-geometry.o In file included from molecule-class-info-ncs.cc:51: graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ molecule-class-info-ncs.cc: In member function 'std::pair molecule_class_info_t::chain_centre_and_radius(const std::string&) const': molecule-class-info-ncs.cc:2623:77: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2623 | molecule_class_info_t::chain_centre_and_radius(const std::string &chain_id) const { | ^~~~~ molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_phi_psi(int) const': molecule-class-info-other.cc:3628:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3628 | molecule_class_info_t::get_phi_psi(int atom_index) const { | ^~~~~~~~~~~~~~~~~~~~~ molecule-class-info-other.cc: In member function 'std::pair > molecule_class_info_t::get_clash_score(const coot::minimol::molecule&, bool, int) const': molecule-class-info-other.cc:3805:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3805 | std::pair rotamer_info = get_minimol_pos(a_rotamer); | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecular-mesh-generator.lo molecular-mesh-generator.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecular-mesh-generator.cc -fPIC -DPIC -o .libs/molecular-mesh-generator.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-widget-work.cc:27: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecular-mesh-generator.cc:43: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecular-mesh-generator-mol-tris.lo molecular-mesh-generator-mol-tris.cc In file included from ../MoleculesToTriangles/CXXClasses/Renderer.h:28, from ../MoleculesToTriangles/CXXClasses/RendererGL.h:28: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecular-mesh-generator-mol-tris.cc -fPIC -DPIC -o .libs/molecular-mesh-generator-mol-tris.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from molecule-class-info-geometry.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecular-mesh-generator-mol-tris.cc:35: ../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] 63 | #pragma mark - ../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] 64 | #pragma mark Debug routine graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/Renderer.h:28, from ../MoleculesToTriangles/CXXClasses/RendererGL.h:28: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o obj_loader.lo obj_loader.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c obj_loader.cc -fPIC -DPIC -o .libs/obj_loader.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pick.lo pick.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o positron-plot.lo positron-plot.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151, from molecule-class-info-widget-work.cc:530: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c positron-plot.cc -fPIC -DPIC -o .libs/positron-plot.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pick.cc -fPIC -DPIC -o .libs/pick.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from gtk-manual.h:26, from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o probe-clash-score.lo probe-clash-score.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c probe-clash-score.cc -fPIC -DPIC -o .libs/probe-clash-score.o molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_phi_psi(int) const': molecule-class-info-other.cc:3628:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3628 | molecule_class_info_t::get_phi_psi(int atom_index) const { | ^~~~~~~~~~~~~~~~~~~~~ molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule&) const': molecule-class-info-other.cc:3894:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3894 | molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule &a_rotamer) const { | ^~~~~~~~~~~~~~~~~~~~~ In file included from probe-clash-score.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cc-interface.hh:37, from positron-plot.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db-interface.lo protein_db-interface.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from pick.cc:38: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db-interface.cc -fPIC -DPIC -o .libs/protein_db-interface.o positron-plot.cc: In member function 'std::pair plot_data_t::canvas_coords_to_positron_coords(double, double) const': positron-plot.cc:169:65: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 169 | canvas_coords_to_positron_coords(double cx, double cy) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../mini-mol/mini-mol-utils.hh:22, from protein_db-interface.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pumpkin.lo pumpkin.cc positron-plot.cc: In member function 'void plot_data_t::fill_plot_data_from_positron_metadata(const std::string&, const std::string&)': positron-plot.cc:259:81: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 259 | std::pair sane_min_max = get_sane_min_v_max_v(mdc.metadata); | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o python-classes.lo python-classes.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pumpkin.cc -fPIC -DPIC -o .libs/pumpkin.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c python-classes.cc -fPIC -DPIC -o .libs/python-classes.o In file included from command-arg.hh:33, from graphics-info.h:66, from pick.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Particle.lo Particle.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o read-phs.lo read-phs.c /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-cif.lo read-cif.cc libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c read-phs.c -fPIC -DPIC -o .libs/read-phs.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Particle.cc -fPIC -DPIC -o .libs/Particle.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama_mousey.lo rama_mousey.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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-D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama_plot_with_canvas.lo rama_plot_with_canvas.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-cif.cc -fPIC -DPIC -o .libs/read-cif.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o text-rendering-utils.lo text-rendering-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama_mousey.cc -fPIC -DPIC -o .libs/rama_mousey.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 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-DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 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-I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o screendump-tga.lo screendump-tga.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rsr-functions.cc -fPIC -DPIC -o .libs/rsr-functions.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sdf-interface.lo sdf-interface.cc In file included from Particle.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c screendump-tga.cc -fPIC -DPIC -o .libs/screendump-tga.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sequence-view.lo sequence-view.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sdf-interface.cc -fPIC -DPIC -o .libs/sdf-interface.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o seq-view-interface.lo seq-view-interface.c In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-view.cc -fPIC -DPIC -o .libs/sequence-view.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Shader.lo Shader.cc libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c seq-view-interface.c -fPIC -DPIC -o .libs/seq-view-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Shader.cc -fPIC -DPIC -o .libs/Shader.o In file included from read-cif.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sound.lo sound.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o startup-utils.lo startup-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sound.cc -fPIC -DPIC -o .libs/sound.o seq-view-interface.c: In function 'seq_lookup_widget': seq-view-interface.c:56:14: warning: unused variable 'parent' [-Wunused-variable] 56 | GtkWidget *parent = NULL, *found_widget = NULL; | ^~~~~~ seq-view-interface.c: In function 'create_sequence_view_dialog': seq-view-interface.c:90:3: warning: 'gtk_dialog_new' is deprecated [-Wdeprecated-declarations] 90 | sequence_view_dialog = gtk_dialog_new (); | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkappchooserdialog.h:31, from /usr/include/gtk-4.0/gtk/gtk.h:43, from seq-view-interface.c:46: /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:130:12: note: declared here 130 | GtkWidget* gtk_dialog_new (void); | ^~~~~~~~~~~~~~ seq-view-interface.c:98:3: warning: 'gtk_dialog_get_content_area' is deprecated [-Wdeprecated-declarations] 98 | dialog_vbox1 = gtk_dialog_get_content_area(GTK_DIALOG(sequence_view_dialog)); | ^~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ seq-view-interface.c:100:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 100 | gtk_widget_show (dialog_vbox1); | ^~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c:108:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 108 | gtk_widget_show (sequence_view_scrolledwindow); | ^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c:127:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 127 | gtk_widget_show (hbox1); | ^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c:143:3: warning: 'gtk_widget_show' is deprecated: Use 'gtk_widget_set_visible or gtk_window_present' instead [-Wdeprecated-declarations] 143 | gtk_widget_show (sequence_view_close_button); | ^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:271:12: note: declared here 271 | void gtk_widget_show (GtkWidget *widget); | ^~~~~~~~~~~~~~~ seq-view-interface.c: In function 'on_sequence_view_close_button_clicked': seq-view-interface.c:157:15: warning: unused variable 'window' [-Wunused-variable] 157 | GtkWidget *window = seq_lookup_widget(GTK_WIDGET(button), "sequence_view_dialog"); | ^~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o testing.lo testing.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c startup-utils.cc -fPIC -DPIC -o .libs/startup-utils.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from pick.cc:54: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from startup-utils.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c testing.cc -fPIC -DPIC -o .libs/testing.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o testing-2.lo testing-2.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Texture.lo Texture.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c testing-2.cc -fPIC -DPIC -o .libs/testing-2.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Texture.cc -fPIC -DPIC -o .libs/Texture.o In file included from sound.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from restraints-editor.cc:40: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from Texture.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from text-rendering-utils.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o TextureMesh.lo TextureMesh.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from rsr-functions.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c TextureMesh.cc -fPIC -DPIC -o .libs/TextureMesh.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from screendump-tga.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from restraints-editor.cc:49: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o tomo-tools.lo tomo-tools.cc In file included from ../ideal/simple-restraint.hh:162, from testing-2.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from testing-2.cc:25: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from testing.hh:26, from testing-2.cc:28: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c tomo-tools.cc -fPIC -DPIC -o .libs/tomo-tools.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from sound.cc:45: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from sdf-interface.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from testing.hh:26, from testing.cc:33: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from testing.hh:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from tomo-tools.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from text-rendering-utils.cc:35: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from testing.cc:50: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from testing.cc:60: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from restraints-editor.cc:37: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_atom_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:126:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 126 | GtkTreeStore *tree_store_atoms = gtk_tree_store_new (4, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | // G_TYPE_FLOAT // for partial change | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | G_TYPE_INT // for formal change | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | ); | ~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:292: /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:135:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 135 | gtk_tree_view_set_model(tv_atoms, GTK_TREE_MODEL(tree_store_atoms)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:138:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 138 | gtk_tree_store_append(tree_store_atoms, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:148:25: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 148 | gtk_tree_store_set(tree_store_atoms, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | 0, restraints.atom_info[i].atom_id_4c.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | 1, restraints.atom_info[i].type_symbol.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | 2, restraints.atom_info[i].type_energy.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | 3, fc, | ~~~~~~ 153 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'GtkCellRenderer* coot::restraints_editor::add_cell_renderer(GtkTreeView*, GtkTreeStore*, const std::string&, int, int)': restraints-editor.cc:172:62: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 172 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellrendereraccel.h:24, from /usr/include/gtk-4.0/gtk/gtk.h:70: /usr/include/gtk-4.0/gtk/deprecated/gtkcellrenderertext.h:62:18: note: declared here 62 | GtkCellRenderer *gtk_cell_renderer_text_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:173:55: warning: 'GtkTreeViewColumn* gtk_tree_view_column_new()' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 173 | GtkTreeViewColumn *column = gtk_tree_view_column_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:83:25: note: declared here 83 | GtkTreeViewColumn *gtk_tree_view_column_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:174:33: warning: 'void gtk_tree_view_column_set_title(GtkTreeViewColumn*, const char*)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 174 | gtk_tree_view_column_set_title(column, column_title.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:165:25: note: declared here 165 | void gtk_tree_view_column_set_title (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:175:30: warning: 'int gtk_tree_view_append_column(GtkTreeView*, GtkTreeViewColumn*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 175 | gtk_tree_view_append_column(tree_view, column); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:226:24: note: declared here 226 | int gtk_tree_view_append_column (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:176:34: warning: 'void gtk_tree_view_column_pack_start(GtkTreeViewColumn*, GtkCellRenderer*, gboolean)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 176 | gtk_tree_view_column_pack_start(column, cell_renderer, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:91:25: note: declared here 91 | void gtk_tree_view_column_pack_start (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:177:37: warning: 'void gtk_tree_view_column_add_attribute(GtkTreeViewColumn*, GtkCellRenderer*, const char*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 177 | gtk_tree_view_column_add_attribute(column, cell_renderer, "text", pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:101:25: note: declared here 101 | void gtk_tree_view_column_add_attribute (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:180:42: warning: 'void gtk_tree_view_column_set_sort_column_id(GtkTreeViewColumn*, int)' is deprecated: Use 'GtkColumnView and GtkColumnViewColumn' instead [-Wdeprecated-declarations] 180 | gtk_tree_view_column_set_sort_column_id(column, pos); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeviewcolumn.h:201:25: note: declared here 201 | void gtk_tree_view_column_set_sort_column_id (GtkTreeViewColumn *tree_column, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In static member function 'static void coot::restraints_editor::cell_edited_callback(GtkCellRendererText*, gchar*, gchar*, gpointer)': restraints-editor.cc:214:53: warning: 'GtkTreePath* gtk_tree_path_new_from_string(const char*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 214 | GtkTreePath *path = gtk_tree_path_new_from_string(path_string); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:201:14: note: declared here 201 | GtkTreePath *gtk_tree_path_new_from_string (const char *path); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:221:28: warning: 'gboolean gtk_tree_model_get_iter(GtkTreeModel*, GtkTreeIter*, GtkTreePath*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 221 | gtk_tree_model_get_iter (model, &iter, path); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:316:19: note: declared here 316 | gboolean gtk_tree_model_get_iter (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:228:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 228 | gtk_tree_store_set (GTK_TREE_STORE (model), &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 | column, f, | ~~~~~~~~~~ 230 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:236:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 236 | gtk_tree_store_set (GTK_TREE_STORE (model), &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 | column, ii, | ~~~~~~~~~~~ 238 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:243:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 243 | gtk_tree_store_set (GTK_TREE_STORE (model), &iter, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 | column, new_text, | ~~~~~~~~~~~~~~~~~ 245 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_angle_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:346:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 346 | gtk_tree_store_new (5, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | G_TYPE_FLOAT, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:353:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 353 | gtk_tree_view_set_model(tv_angles, GTK_TREE_MODEL(tree_store_angles)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:356:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 356 | gtk_tree_store_append(tree_store_angles, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:357:25: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 357 | gtk_tree_store_set(tree_store_angles, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 | 0, restraints.angle_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | 1, restraints.angle_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 | 2, restraints.angle_restraint[i].atom_id_3_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 | 3, restraints.angle_restraint[i].angle(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 | 4, restraints.angle_restraint[i].esd(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_info_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:383:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 383 | gtk_tree_store_new (7, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 | G_TYPE_INT, G_TYPE_INT, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:391:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 391 | gtk_tree_view_set_model(tv_info, GTK_TREE_MODEL(tree_store_info)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:402:25: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 402 | gtk_tree_store_append(tree_store_info, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:403:22: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 403 | gtk_tree_store_set(tree_store_info, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 | 0, restraints.residue_info.comp_id.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 | 1, tlc.c_str(), | ~~~~~~~~~~~~~~~ 406 | 2, restraints.residue_info.name.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 | 3, restraints.residue_info.group.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 | 4, restraints.residue_info.number_atoms_all, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 | 5, restraints.residue_info.number_atoms_nh, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 | 6, restraints.residue_info.description_level.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_bond_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:430:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 430 | GtkTreeStore *tree_store_bonds = gtk_tree_store_new (5, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 | G_TYPE_FLOAT, G_TYPE_FLOAT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:436:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 436 | gtk_tree_view_set_model(tv_bonds, GTK_TREE_MODEL(tree_store_bonds)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:439:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 439 | gtk_tree_store_append(tree_store_bonds, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:456:28: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 456 | gtk_tree_store_set(tree_store_bonds, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 | 0, restraints.bond_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 | 1, restraints.bond_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 | 2, restraints.bond_restraint[i].type().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 | 3, value_dist, | ~~~~~~~~~~~~~~ 461 | 4, value_esd, | ~~~~~~~~~~~~~ 462 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_torsion_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:493:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 493 | gtk_tree_store_new (8, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 494 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 | G_TYPE_FLOAT, G_TYPE_FLOAT, G_TYPE_INT); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:500:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 500 | gtk_tree_view_set_model(tv_torsions, GTK_TREE_MODEL(tree_store_torsions)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:503:29: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 503 | gtk_tree_store_append(tree_store_torsions, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:504:26: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 504 | gtk_tree_store_set(tree_store_torsions, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 | 0, restraints.torsion_restraint[i].id().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 | 1, restraints.torsion_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 | 2, restraints.torsion_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 | 3, restraints.torsion_restraint[i].atom_id_3_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 | 4, restraints.torsion_restraint[i].atom_id_4_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 | 5, restraints.torsion_restraint[i].angle(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 | 6, restraints.torsion_restraint[i].esd(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | coot::restraints_editor::TORSION_COL_PERIODICTY, restraints.torsion_restraint[i].periodicity(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_chiral_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:536:26: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 536 | gtk_tree_store_new (6, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 537 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 | G_TYPE_STRING); | ~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:543:27: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 543 | gtk_tree_view_set_model(tv_chirals, GTK_TREE_MODEL(tree_store_chirals)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:548:28: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 548 | gtk_tree_store_append(tree_store_chirals, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:549:25: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 549 | gtk_tree_store_set(tree_store_chirals, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | 0, restraints.chiral_restraint[i].Chiral_Id().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 | 1, restraints.chiral_restraint[i].atom_id_c_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 | 2, restraints.chiral_restraint[i].atom_id_1_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 | 3, restraints.chiral_restraint[i].atom_id_2_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 | 4, restraints.chiral_restraint[i].atom_id_3_4c().c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 | coot::restraints_editor::CHIRAL_COL_SIGN, chiral_volume_string.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::fill_plane_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:592:34: warning: 'void gtk_tree_view_set_model(GtkTreeView*, GtkTreeModel*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 592 | gtk_tree_view_set_model(tv_planes, GTK_TREE_MODEL(tree_store_planes)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:201:24: note: declared here 201 | void gtk_tree_view_set_model (GtkTreeView *tree_view, | ^~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:596:35: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 596 | gtk_tree_store_append(tree_store_planes, &toplevel, NULL); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:599:32: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 599 | gtk_tree_store_set(tree_store_planes, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 | esd_col_no, restraints.plane_restraint[iplane].dist_esd(0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:602:32: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 602 | gtk_tree_store_set(tree_store_planes, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 | 0, restraints.plane_restraint[iplane].plane_id.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:606:35: warning: 'void gtk_tree_store_set(GtkTreeStore*, GtkTreeIter*, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 606 | gtk_tree_store_set(tree_store_planes, &toplevel, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 | iat+1, restraints.plane_restraint[iplane][iat].first.c_str(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 | -1); | ~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:81:15: note: declared here 81 | void gtk_tree_store_set (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'GtkTreeStore* coot::restraints_editor::make_tree_store_for_planes(int)': restraints-editor.cc:637:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 637 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 638 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:642:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 642 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 643 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:647:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 647 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 648 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 650 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:653:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 653 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 654 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:659:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 659 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 660 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:665:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 665 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 666 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:671:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 671 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 672 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 675 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:678:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 678 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 679 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:685:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 685 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 686 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:692:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 692 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 693 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:699:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 699 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 700 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 704 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:707:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 707 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 708 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:715:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 715 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 716 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:723:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 723 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 724 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:731:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 731 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 732 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 737 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:740:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 740 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 741 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:749:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 749 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 750 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:758:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 758 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 759 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:767:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 767 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 768 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 774 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:777:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 777 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 778 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 | G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:787:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 787 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 788 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:797:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 797 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 798 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:807:29: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 807 | gtk_tree_store_new (natoms+2, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 808 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 | G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 | G_TYPE_STRING, | ~~~~~~~~~~~~~~ 815 | G_TYPE_FLOAT); | ~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:63:15: note: declared here 63 | GtkTreeStore *gtk_tree_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_bond_restraints() const': restraints-editor.cc:857:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 857 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_bonds.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:868:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 868 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_bonds.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:882:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 882 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_bonds.store), &iter, col_no, &f, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:890:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 890 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_bonds.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_angle_restraints() const': restraints-editor.cc:912:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 912 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_angles.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:923:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 923 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_angles.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:934:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 934 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_angles.store), &iter, col_no, &f, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:942:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 942 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_angles.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_torsion_restraints() const': restraints-editor.cc:970:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 970 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_torsions.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:984:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 984 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_torsions.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:999:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 999 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_torsions.store), &iter, col_no, &f, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1008:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1008 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_torsions.store), &iter, col_no, &ii, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1013:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1013 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_torsions.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_plane_restraints() const': restraints-editor.cc:1050:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1050 | bool b = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_planes.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1061:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1061 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_planes.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1072:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1072 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_planes.store), &iter, col_no, &val, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1094:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1094 | b = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_planes.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::vector coot::restraints_editor::get_chiral_restraints() const': restraints-editor.cc:1105:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1105 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_chirals.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1117:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1117 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_chirals.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1134:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1134 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_chirals.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::pair > coot::restraints_editor::get_atom_info() const': restraints-editor.cc:1178:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1178 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_atoms.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1189:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1189 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_atoms.store), &iter, col_no, &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1202:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1202 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_atoms.store), &iter, col_no, &i, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1209:36: warning: 'gboolean gtk_tree_model_iter_next(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1209 | v = gtk_tree_model_iter_next (GTK_TREE_MODEL(view_and_store_atoms.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'std::pair coot::restraints_editor::get_residue_info() const': restraints-editor.cc:1251:42: warning: 'gboolean gtk_tree_model_get_iter_first(GtkTreeModel*, GtkTreeIter*)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1251 | bool v = gtk_tree_model_get_iter_first(GTK_TREE_MODEL(view_and_store_info.store), &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:327:19: note: declared here 327 | gboolean gtk_tree_model_get_iter_first (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1265:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1265 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_info.store), &iter, col_no, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | &place_string_here, -1); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc:1280:31: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 1280 | gtk_tree_model_get(GTK_TREE_MODEL(view_and_store_info.store), &iter, col_no, &ii, -1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ restraints-editor.cc: In function 'void restraints_editor_save_restraint_by_widget(GtkWidget*)': restraints-editor.cc:1368:40: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 1368 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(ww), filename.c_str()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In function 'void save_monomer_restraints_by_widget(GtkDialog*)': restraints-editor.cc:1386:43: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 1386 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(chooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::delete_restraint(GtkWidget*)': restraints-editor.cc:1423:69: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 1423 | GtkTreeSelection *tree_selection = gtk_tree_view_get_selection(tree_view); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1427:44: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 1427 | gtk_tree_selection_get_selected(tree_selection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:290: /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1428:34: warning: 'gboolean gtk_tree_store_remove(GtkTreeStore*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 1428 | gtk_tree_store_remove(tree_store, &iter); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:95:15: note: declared here 95 | gboolean gtk_tree_store_remove (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc: In member function 'void coot::restraints_editor::add_restraint(GtkWidget*)': restraints-editor.cc:1456:69: warning: 'GtkTreeSelection* gtk_tree_view_get_selection(GtkTreeView*)' is deprecated: Use 'GtkListView' instead [-Wdeprecated-declarations] 1456 | GtkTreeSelection *tree_selection = gtk_tree_view_get_selection(tree_view); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:204:24: note: declared here 204 | GtkTreeSelection *gtk_tree_view_get_selection (GtkTreeView *tree_view); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1460:44: warning: 'gboolean gtk_tree_selection_get_selected(GtkTreeSelection*, GtkTreeModel**, GtkTreeIter*)' is deprecated [-Wdeprecated-declarations] 1460 | gtk_tree_selection_get_selected(tree_selection, &model, &iter); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreeselection.h:96:18: note: declared here 96 | gboolean gtk_tree_selection_get_selected (GtkTreeSelection *selection, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ restraints-editor.cc:1464:34: warning: 'void gtk_tree_store_append(GtkTreeStore*, GtkTreeIter*, GtkTreeIter*)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 1464 | gtk_tree_store_append(tree_store, &iter, parent); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o trackball.lo trackball.c In file included from command-arg.hh:33, from graphics-info.h:66, from TextureMesh.cc:48: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c trackball.c -fPIC -DPIC -o .libs/trackball.o trackball.c:262:17: warning: argument 1 of type 'float[4]' with mismatched bound [-Warray-parameter=] 262 | add_quats(float q1[4], float q2[4], float dest[4]) | ~~~~~~^~~~~ In file included from trackball.c:54: trackball.h:82:18: note: previously declared as 'float *' 82 | add_quats(float *q1, float *q2, float *dest); | ~~~~~~~^~ trackball.c:262:30: warning: argument 2 of type 'float[4]' with mismatched bound [-Warray-parameter=] 262 | add_quats(float q1[4], float q2[4], float dest[4]) | ~~~~~~^~~~~ trackball.h:82:29: note: previously declared as 'float *' 82 | add_quats(float *q1, float *q2, float *dest); | ~~~~~~~^~ trackball.c:262:43: warning: argument 3 of type 'float[4]' with mismatched bound [-Warray-parameter=] 262 | add_quats(float q1[4], float q2[4], float dest[4]) | ~~~~~~^~~~~~~ trackball.h:82:40: note: previously declared as 'float *' 82 | add_quats(float *q1, float *q2, float *dest); | ~~~~~~~^~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o user-mods.lo user-mods.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o xmap-utils.lo xmap-utils.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from testing.cc:64: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c user-mods.cc -fPIC -DPIC -o .libs/user-mods.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c xmap-utils.cc -fPIC -DPIC -o .libs/xmap-utils.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-plot-phi-psi.lo rama-plot-phi-psi.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o spherical-density.lo spherical-density.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from tomo-tools.cc:36: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c spherical-density.cc -fPIC -DPIC -o .libs/spherical-density.o In file included from user-mods.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o single-map-properties-dialog.lo single-map-properties-dialog.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c single-map-properties-dialog.cc -fPIC -DPIC -o .libs/single-map-properties-dialog.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o validation.lo validation.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o view.lo view.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation.cc -fPIC -DPIC -o .libs/validation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c view.cc -fPIC -DPIC -o .libs/view.o In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3906, from /usr/include/c++/14/math.h:36, from /usr/include/python3.13/Python.h:22, from sdf-interface.cc:23: In constructor 'constexpr std::pair<_T1, _T2>::pair(_U1&&, _U2&&) [with _U1 = bool; _U2 = clipper::Coord_orth&; typename std::enable_if<(std::_PCC::_MoveConstructiblePair<_U1, _U2>() && std::_PCC::_ImplicitlyMoveConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = bool; _T2 = clipper::Coord_orth]', inlined from 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)' at sdf-interface.cc:413:56: /usr/include/c++/14/bits/stl_pair.h:882:42: warning: 'v' may be used uninitialized [-Wmaybe-uninitialized] 882 | : first(std::forward<_U1>(__x)), second(std::forward<_U2>(__y)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sdf-interface.cc: In function 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)': sdf-interface.cc:403:24: note: 'v' declared here 403 | clipper::Coord_orth v; | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from single-map-properties-dialog.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o widget-from-builder.lo widget-from-builder.cc In file included from command-arg.hh:33, from graphics-info.h:66, from spherical-density.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../src/post-process-coot-wrap-guile.sh coot_wrap_guile_pre.cc coot_wrap_guile.cc adding gtk2 and guile ifdefs from coot_wrap_guile_pre.cc coot_wrap_guile.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_wrap_guile.lo coot_wrap_guile.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from tomo-tools.cc:139: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c widget-from-builder.cc -fPIC -DPIC -o .libs/widget-from-builder.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_wrap_guile.cc -fPIC -DPIC -o .libs/coot_wrap_guile.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from single-map-properties-dialog.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from validation.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from view.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ testing.cc: In function 'int test_ligand_conformer_torsion_angles()': testing.cc:1631:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1631 | std::pair p = conformer_info[i].get_set_and_real_torsions(itor); | ^ testing.cc: In function 'int test_lsq_plane()': testing.cc:2629:65: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2629 | std::pair d = coot::lsq_plane_deviation(v, pt); | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from cc-interface.hh:39, from spherical-density.cc:32: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from single-map-properties-dialog.hh:32, from single-map-properties-dialog.cc:31: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ single-map-properties-dialog.cc: In function 'void on_colour_chooser_dialog_response(GtkDialog*, int)': single-map-properties-dialog.cc:364:33: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 364 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(dialog), &color); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ single-map-properties-dialog.cc: In function 'void show_map_colour_selector_with_parent(int, GtkWidget*)': single-map-properties-dialog.cc:385:70: warning: 'GtkWidget* gtk_color_chooser_dialog_new(const char*, GtkWindow*)' is deprecated [-Wdeprecated-declarations] 385 | GtkWidget *colour_chooser_dialog = gtk_color_chooser_dialog_new("Test", GTK_WINDOW(parent_window)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:84: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooserdialog.h:38:13: note: declared here 38 | GtkWidget * gtk_color_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ single-map-properties-dialog.cc:392:33: warning: 'void gtk_color_chooser_set_rgba(GtkColorChooser*, const GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 392 | gtk_color_chooser_set_rgba(GTK_COLOR_CHOOSER(colour_chooser_dialog), map_colour_p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:69:10: note: declared here 69 | void gtk_color_chooser_set_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from ../validation-graphs/validation-graphs.hh:30, from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from widget-from-builder.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cc-interface.hh:39, from validation.cc:30: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from widget-from-builder.hh:31, from widget-from-builder.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ testing.cc: In function 'int test_ligand_conformer_torsion_angles()': testing.cc:1596:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1596 | int test_ligand_conformer_torsion_angles() { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ testing.cc: In function 'int test_lsq_plane()': testing.cc:2615:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2615 | int test_lsq_plane() { | ^~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootsumo.la -rpath /usr/lib/aarch64-linux-gnu init_coot_as_python_module.lo boids.lo boot-python.lo atom-overlaps.lo git-revision-count.lo scm-boot-guile.lo c-interface-analysis.lo c-interface-bonds.lo c-interface-build.lo c-interface-build-morph.lo c-interface-build-main-chain.lo c-interface-build-side-chain.lo c-interface-build-symmetry.lo c-interface-build-gui.lo c-interface-curlew.lo c-interface-database.lo c-interface-gui.lo c-interface-gtk2.lo c-interface-info.lo c-interface-kk.lo c-interface-image.lo c-interface-ligands-gui.lo c-interface-ligands.lo c-interface-maps.lo c-interface-mmdb.lo c-interface-mogul.lo c-interface-mogul-scripting.lo c-interface-mutate.lo c-interface-ncs.lo c-interface-network.lo c-interface-nucleotides.lo c-interface-pisa.lo c-interface-pisa-gui.lo c-interface-preferences.lo c-interface-python.lo c-interface-refine.lo c-interface-residues.lo c-interface-refmac.lo simple-refmac.lo c-interface-scm.lo c-interface-sequence.lo c-interface-sfs.lo c-interface-sharpen.lo c-interface-superpose.lo c-interface-validate.lo c-interface-view.lo c-interface-widgets.lo c-interface-waters.lo c-interface-waters-gui.lo c-interface.lo c-interface-test.lo cc-interface-alignment.lo cc-interface-graphics.lo cc-interface-merge.lo cc-interface-molecular-representation.lo cc-interface-molecular-symmetry.lo cc-interface-scripting.lo cc-interface-map-utils.lo cc-interface-png.lo cc-interface-user-defined-atom-colours.lo cfc.lo change-dir.lo cmtz-interface.lo command-line.lo command-line-extern.lo coot-application.lo coot-colour.lo coot-align.lo coot-nomenclature.lo coot-glue-gtk2.lo coot-glue-gtk2-python.lo coot-hydrogens.lo coot-phi-psi.lo coot_pythonmodule.lo coot-setup-python.lo coot_wrap_guile.lo curlew-gtk4.lo draw.lo graphics-info-tick-function.lo drag-and-drop.lo draw-generic-display-objects.lo dynamic-validation.lo eyes.lo event-controller-callbacks.lo fit-loop-gui.lo flev.lo framebuffer.lo old-generic-display-object.lo gaussian-surface.lo generic-objects.lo geometry-graphs.lo get-residue.lo get-monomer.lo gl-rama-plot.lo globjects.lo globularize.lo graphics-info.lo graphics-info-defines.lo graphics-info-defines-gtk4.lo graphics-info-draw.lo graphics-info-draw-models.lo graphics-info-graphs.lo graphics-info-gui.lo graphics-info-init.lo graphics-info-intermediate.lo graphics-info-modelling.lo graphics-info-navigation.lo graphics-info-navigation-gtk2.lo graphics-info-preferences.lo graphics-info-network.lo graphics-info-mutate.lo graphics-info-lsq.lo graphics-info-opengl.lo graphics-info-pick.lo graphics-info-refmac.lo graphics-info-render.lo graphics-info-render-scene.lo graphics-info-residues.lo graphics-info-refine.lo graphics-info-scripting.lo graphics-info-state.lo graphics-info-statics.lo graphics-info-superpose.lo graphics-info-trackball.lo graphics-ligand-view.lo graphics-ligand-mesh-molecule.lo gl-matrix.lo gtkglarea-rama-plot.lo gtk-manual.lo gtk-widget-conversion-utils.lo gtk-utils.lo HUDMesh.lo HUDTextureMesh.lo Instanced-Markup-Mesh.lo init-from-gtkbuilder.lo key-bindings.lo LinesMesh.lo LigandViewMesh.lo lbg-callbacks-outer.lo lbg-interface.lo Model.lo make-a-dodec.lo matrix-utils.lo Mesh.lo Mesh-from-glTF.lo Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds.lo meshed-generic-display-object.lo model-molecule-meshes.lo molecule-class-info.lo molecule-class-info-alignment.lo molecule-class-info-analysis.lo molecule-class-info-bonds.lo molecule-class-info-build.lo molecule-class-info-maps.lo molecule-class-info-maps-2.lo molecule-class-info-molecular-symmetry.lo molecule-class-info-kdc.lo molecule-class-info-dots.lo molecule-class-info-dots-internal.lo molecule-class-info-other.lo molecule-class-info-mutate.lo molecule-class-info-residues.lo molecule-class-info-refine.lo molecule-class-info-kk.lo molecule-class-info-surface.lo molecule-class-info-string.lo molecule-class-info-patterson.lo molecule-class-info-ncs.lo molecule-class-info-mol-tris.lo molecule-class-info-widget-work.lo molecule-class-info-geometry.lo molecular-mesh-generator.lo molecular-mesh-generator-mol-tris.lo obj_loader.lo pick.lo positron-plot.lo probe-clash-score.lo protein_db-interface.lo pumpkin.lo python-classes.lo Particle.lo read-phs.lo read-cif.lo rama_mousey.lo rama_plot_with_canvas.lo text-rendering-utils.lo restraints-editor.lo rsr-functions.lo screendump-tga.lo sdf-interface.lo sequence-view.lo seq-view-interface.lo Shader.lo sound.lo startup-utils.lo testing.lo testing-2.lo Texture.lo TextureMesh.lo tomo-tools.lo trackball.lo user-mods.lo xmap-utils.lo rama-plot-phi-psi.lo spherical-density.lo single-map-properties-dialog.lo validation.lo view.lo widget-from-builder.lo -fopenmp ../api/libcoot-api.la ../pli/libcoot-pli.la ../layla/libcoot-layla.la ../ligand/libcoot-res-tracer.la ../ligand/libcoot-ligand.la ../validation-graphs/libcoot-validation-graphs.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../compat/libcoot-compat.la -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lm -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lfreetype -lsqlite3 -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/init_coot_as_python_module.o .libs/boids.o .libs/boot-python.o .libs/atom-overlaps.o .libs/git-revision-count.o .libs/scm-boot-guile.o .libs/c-interface-analysis.o .libs/c-interface-bonds.o .libs/c-interface-build.o .libs/c-interface-build-morph.o .libs/c-interface-build-main-chain.o .libs/c-interface-build-side-chain.o .libs/c-interface-build-symmetry.o .libs/c-interface-build-gui.o .libs/c-interface-curlew.o .libs/c-interface-database.o .libs/c-interface-gui.o .libs/c-interface-gtk2.o .libs/c-interface-info.o .libs/c-interface-kk.o .libs/c-interface-image.o .libs/c-interface-ligands-gui.o .libs/c-interface-ligands.o .libs/c-interface-maps.o .libs/c-interface-mmdb.o .libs/c-interface-mogul.o .libs/c-interface-mogul-scripting.o .libs/c-interface-mutate.o .libs/c-interface-ncs.o .libs/c-interface-network.o .libs/c-interface-nucleotides.o .libs/c-interface-pisa.o .libs/c-interface-pisa-gui.o .libs/c-interface-preferences.o .libs/c-interface-python.o .libs/c-interface-refine.o .libs/c-interface-residues.o .libs/c-interface-refmac.o .libs/simple-refmac.o .libs/c-interface-scm.o .libs/c-interface-sequence.o .libs/c-interface-sfs.o .libs/c-interface-sharpen.o .libs/c-interface-superpose.o .libs/c-interface-validate.o .libs/c-interface-view.o .libs/c-interface-widgets.o .libs/c-interface-waters.o .libs/c-interface-waters-gui.o .libs/c-interface.o .libs/c-interface-test.o .libs/cc-interface-alignment.o .libs/cc-interface-graphics.o .libs/cc-interface-merge.o .libs/cc-interface-molecular-representation.o .libs/cc-interface-molecular-symmetry.o .libs/cc-interface-scripting.o .libs/cc-interface-map-utils.o .libs/cc-interface-png.o .libs/cc-interface-user-defined-atom-colours.o .libs/cfc.o .libs/change-dir.o .libs/cmtz-interface.o .libs/command-line.o .libs/command-line-extern.o .libs/coot-application.o .libs/coot-colour.o .libs/coot-align.o .libs/coot-nomenclature.o .libs/coot-glue-gtk2.o .libs/coot-glue-gtk2-python.o .libs/coot-hydrogens.o .libs/coot-phi-psi.o .libs/coot_pythonmodule.o .libs/coot-setup-python.o .libs/coot_wrap_guile.o .libs/curlew-gtk4.o .libs/draw.o .libs/graphics-info-tick-function.o .libs/drag-and-drop.o .libs/draw-generic-display-objects.o .libs/dynamic-validation.o .libs/eyes.o .libs/event-controller-callbacks.o .libs/fit-loop-gui.o .libs/flev.o .libs/framebuffer.o .libs/old-generic-display-object.o .libs/gaussian-surface.o .libs/generic-objects.o .libs/geometry-graphs.o .libs/get-residue.o .libs/get-monomer.o .libs/gl-rama-plot.o .libs/globjects.o .libs/globularize.o .libs/graphics-info.o .libs/graphics-info-defines.o .libs/graphics-info-defines-gtk4.o .libs/graphics-info-draw.o .libs/graphics-info-draw-models.o .libs/graphics-info-graphs.o .libs/graphics-info-gui.o .libs/graphics-info-init.o .libs/graphics-info-intermediate.o .libs/graphics-info-modelling.o .libs/graphics-info-navigation.o .libs/graphics-info-navigation-gtk2.o .libs/graphics-info-preferences.o .libs/graphics-info-network.o .libs/graphics-info-mutate.o .libs/graphics-info-lsq.o .libs/graphics-info-opengl.o .libs/graphics-info-pick.o .libs/graphics-info-refmac.o .libs/graphics-info-render.o .libs/graphics-info-render-scene.o .libs/graphics-info-residues.o .libs/graphics-info-refine.o .libs/graphics-info-scripting.o .libs/graphics-info-state.o .libs/graphics-info-statics.o .libs/graphics-info-superpose.o .libs/graphics-info-trackball.o .libs/graphics-ligand-view.o .libs/graphics-ligand-mesh-molecule.o .libs/gl-matrix.o .libs/gtkglarea-rama-plot.o .libs/gtk-manual.o .libs/gtk-widget-conversion-utils.o .libs/gtk-utils.o .libs/HUDMesh.o .libs/HUDTextureMesh.o .libs/Instanced-Markup-Mesh.o .libs/init-from-gtkbuilder.o .libs/key-bindings.o .libs/LinesMesh.o .libs/LigandViewMesh.o .libs/lbg-callbacks-outer.o .libs/lbg-interface.o .libs/Model.o .libs/make-a-dodec.o .libs/matrix-utils.o .libs/Mesh.o .libs/Mesh-from-glTF.o .libs/Mesh-from-graphical-bonds-instanced.o .libs/Mesh-from-graphical-bonds.o .libs/meshed-generic-display-object.o .libs/model-molecule-meshes.o .libs/molecule-class-info.o .libs/molecule-class-info-alignment.o .libs/molecule-class-info-analysis.o .libs/molecule-class-info-bonds.o .libs/molecule-class-info-build.o .libs/molecule-class-info-maps.o .libs/molecule-class-info-maps-2.o .libs/molecule-class-info-molecular-symmetry.o .libs/molecule-class-info-kdc.o .libs/molecule-class-info-dots.o .libs/molecule-class-info-dots-internal.o .libs/molecule-class-info-other.o .libs/molecule-class-info-mutate.o .libs/molecule-class-info-residues.o .libs/molecule-class-info-refine.o .libs/molecule-class-info-kk.o .libs/molecule-class-info-surface.o .libs/molecule-class-info-string.o .libs/molecule-class-info-patterson.o .libs/molecule-class-info-ncs.o .libs/molecule-class-info-mol-tris.o .libs/molecule-class-info-widget-work.o .libs/molecule-class-info-geometry.o .libs/molecular-mesh-generator.o .libs/molecular-mesh-generator-mol-tris.o .libs/obj_loader.o .libs/pick.o .libs/positron-plot.o .libs/probe-clash-score.o .libs/protein_db-interface.o .libs/pumpkin.o .libs/python-classes.o .libs/Particle.o .libs/read-phs.o .libs/read-cif.o .libs/rama_mousey.o .libs/rama_plot_with_canvas.o .libs/text-rendering-utils.o .libs/restraints-editor.o .libs/rsr-functions.o .libs/screendump-tga.o .libs/sdf-interface.o .libs/sequence-view.o .libs/seq-view-interface.o .libs/Shader.o .libs/sound.o .libs/startup-utils.o .libs/testing.o .libs/testing-2.o .libs/Texture.o .libs/TextureMesh.o .libs/tomo-tools.o .libs/trackball.o .libs/user-mods.o .libs/xmap-utils.o .libs/rama-plot-phi-psi.o .libs/spherical-density.o .libs/single-map-properties-dialog.o .libs/validation.o .libs/view.o .libs/widget-from-builder.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/api/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/layla/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/density-contour/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/build/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/skeleton/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/angles/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/high-res/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/protein_db/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootilus/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/compat/.libs ../api/.libs/libcoot-api.so ../pli/.libs/libcoot-pli.so ../layla/.libs/libcoot-layla.so ../ligand/.libs/libcoot-res-tracer.so ../ligand/.libs/libcoot-ligand.so ../validation-graphs/.libs/libcoot-validation-graphs.so ../lidia-core/.libs/libcoot-lidia-core.so ../density-contour/.libs/libcoot-isosurface.so ../build/.libs/libcoot-cabuild.so ../skeleton/.libs/libcoot-skeleton.so ../angles/.libs/libcoot-AngleInfo.so ../db-main/.libs/libcoot-db-main.so ../high-res/.libs/libcoot-high-res.so ../ideal/.libs/libcoot-ideal.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../protein_db/.libs/libcoot-protein-db.so ../cootilus/.libs/libcootilus.so ../cootaneer/.libs/libcootaneer.so ../MoleculesToTriangles/CXXClasses/.libs/libMoleculesToTrianglesCXXClasses.so ../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so ../compat/.libs/libcoot-compat.so -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lfreetype -lsqlite3 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -fopenmp -Wl,-soname -Wl,libcootsumo.so.0 -o .libs/libcootsumo.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcootsumo.so.0" && ln -s "libcootsumo.so.0.0.0" "libcootsumo.so.0") libtool: link: (cd ".libs" && rm -f "libcootsumo.so" && ln -s "libcootsumo.so.0.0.0" "libcootsumo.so") libtool: link: ( cd ".libs" && rm -f "libcootsumo.la" && ln -s "../libcootsumo.la" "libcootsumo.la" ) make all-am make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main.o main.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks.o glade-callbacks.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks-main-window.o glade-callbacks-main-window.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks-preferences.o glade-callbacks-preferences.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glade-callbacks-shader-settings.o glade-callbacks-shader-settings.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o new-startup.o new-startup.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o setup-gui-components.o setup-gui-components.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o create-menu-item-actions.o create-menu-item-actions.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o density-score-by-residue-src.o density-score-by-residue-src.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot.lo coot.cc swig -o coot_wrap_python_pre.cc -DUSE_MOLECULES_TO_TRIANGLES -DCOOT_USE_GTK2_INTERFACE -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/python3.13 -DUSE_PYTHON -DUSE_LIBCURL -I../src -I.. -shadow -python -c++ ../src/coot.i libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot.cc -fPIC -DPIC -o .libs/coot.o In file included from ../coot-utils/coot-map-utils.hh:33, from density-score-by-residue-src.cc:50: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from density-score-by-residue-src.cc:52: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from glade-callbacks-preferences.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ glade-callbacks-preferences.cc: In function 'void on_preferences_font_size_others_radiobutton_toggled(GtkToggleButton*, gpointer)': glade-callbacks-preferences.cc:1065:43: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1065 | gint ival = gtk_combo_box_get_active(GTK_COMBO_BOX(w)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94, from glade-callbacks-preferences.cc:28: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_font_size_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks-preferences.cc:1080:39: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1080 | gint ival = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_font_colour_own_radiobutton_toggled(GtkCheckButton*, gpointer)': glade-callbacks-preferences.cc:1119:36: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 1119 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(colorbutton), &col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_font_colorbutton_color_set(GtkColorButton*, gpointer)': glade-callbacks-preferences.cc:1135:30: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 1135 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(colorbutton), &col); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-preferences.cc: In function 'void on_preferences_bond_width_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks-preferences.cc:1196:33: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 1196 | val = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, from glade-callbacks-shader-settings.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from main.cc:75: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from cc-interface.hh:37, from glade-callbacks.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from glade-callbacks-main-window.cc:56: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /bin/sh ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-density-score-by-residue-bin density-score-by-residue-src.o libcootsumo.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../ligand/libcoot-ligand.la ../analysis/libcoot-analysis.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm In file included from command-arg.hh:33, from graphics-info.h:66, from setup-gui-components.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, from create-menu-item-actions.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from main.cc:81: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from glade-callbacks.cc:53: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, from glade-callbacks-main-window.cc:57: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' /bin/sh ../src/post-process-coot-wrap-python.sh gtk2 coot_wrap_python_pre.cc coot_wrap_python.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_wrap_python.lo coot_wrap_python.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_wrap_python.cc -fPIC -DPIC -o .libs/coot_wrap_python.o In file included from command-arg.hh:33, from graphics-info.h:66, from new-startup.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: link: g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-density-score-by-residue-bin density-score-by-residue-src.o ./.libs/libcootsumo.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-extras.so ../coords/.libs/libcoot-coords.so ../mini-mol/.libs/libcoot-mini-mol.so ../ligand/.libs/libcoot-ligand.so ../analysis/.libs/libcoot-analysis.so ../db-main/.libs/libcoot-db-main.so ../ideal/.libs/libcoot-ideal.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so ../cootaneer/.libs/libcootaneer.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from setup-gui-components.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void setup_validation_graph_dialog()': setup-gui-components.cc:162:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 162 | gtk_combo_box_set_model(GTK_COMBO_BOX(model_combobox),GTK_TREE_MODEL(graphics_info_t::validation_graph_model_list)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:163:31: warning: 'void gtk_combo_box_set_id_column(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 163 | gtk_combo_box_set_id_column(GTK_COMBO_BOX(model_combobox),0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:142:15: note: declared here 142 | void gtk_combo_box_set_id_column (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void setup_ramachandran_plot_chooser_dialog()': setup-gui-components.cc:170:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 170 | gtk_combo_box_set_model(GTK_COMBO_BOX(model_combobox), GTK_TREE_MODEL(graphics_info_t::ramachandran_plot_model_list)); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:171:31: warning: 'void gtk_combo_box_set_id_column(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 171 | gtk_combo_box_set_id_column(GTK_COMBO_BOX(model_combobox),0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:142:15: note: declared here 142 | void gtk_combo_box_set_id_column (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void attach_css_style_class_to_overlays()': setup-gui-components.cc:188:36: warning: 'void gtk_css_provider_load_from_data(GtkCssProvider*, const char*, gssize)' is deprecated: Use 'gtk_css_provider_load_from_string' instead [-Wdeprecated-declarations] 188 | gtk_css_provider_load_from_data (provider, ".mainWindowOverlayChild { background: rgba(0,0,0,0.7); }", -1); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:99: /usr/include/gtk-4.0/gtk/gtkcssprovider.h:49:18: note: declared here 49 | void gtk_css_provider_load_from_data (GtkCssProvider *css_provider, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In lambda function: setup-gui-components.cc:191:62: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 191 | GtkStyleContext *context = gtk_widget_get_style_context(widget); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:192:38: warning: 'void gtk_style_context_add_provider(GtkStyleContext*, GtkStyleProvider*, guint)' is deprecated [-Wdeprecated-declarations] 192 | gtk_style_context_add_provider (context, GTK_STYLE_PROVIDER (provider), GTK_STYLE_PROVIDER_PRIORITY_APPLICATION); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:267: /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:64:6: note: declared here 64 | void gtk_style_context_add_provider (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:193:35: warning: 'void gtk_style_context_add_class(GtkStyleContext*, const char*)' is deprecated [-Wdeprecated-declarations] 193 | gtk_style_context_add_class (context, "mainWindowOverlayChild"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:90:10: note: declared here 90 | void gtk_style_context_add_class (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc: In function 'void add_python_scripting_entry_completion(GtkWidget*)': setup-gui-components.cc:215:61: warning: 'GtkEntryCompletion* gtk_entry_completion_new()' is deprecated [-Wdeprecated-declarations] 215 | GtkEntryCompletion *completion = gtk_entry_completion_new(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/gtk-4.0/gtk/gtkentry.h:39, from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:66:21: note: declared here 66 | GtkEntryCompletion *gtk_entry_completion_new (void); | ^~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:216:45: warning: 'void gtk_entry_completion_set_popup_completion(GtkEntryCompletion*, gboolean)' is deprecated [-Wdeprecated-declarations] 216 | gtk_entry_completion_set_popup_completion(completion, TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:108:21: note: declared here 108 | void gtk_entry_completion_set_popup_completion (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:217:40: warning: 'void gtk_entry_completion_set_text_column(GtkEntryCompletion*, int)' is deprecated [-Wdeprecated-declarations] 217 | gtk_entry_completion_set_text_column(completion, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:127:21: note: declared here 127 | void gtk_entry_completion_set_text_column (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:218:47: warning: 'void gtk_entry_completion_set_minimum_key_length(GtkEntryCompletion*, int)' is deprecated [-Wdeprecated-declarations] 218 | gtk_entry_completion_set_minimum_key_length(completion, 2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:85:21: note: declared here 85 | void gtk_entry_completion_set_minimum_key_length (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:219:28: warning: 'void gtk_entry_set_completion(GtkEntry*, GtkEntryCompletion*)' is deprecated [-Wdeprecated-declarations] 219 | gtk_entry_set_completion(GTK_ENTRY(entry), completion); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkentry.h:160:21: note: declared here 160 | void gtk_entry_set_completion (GtkEntry *entry, | ^~~~~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:286:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 286 | GtkListStore *store = gtk_list_store_new(1, G_TYPE_STRING); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26: /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here 63 | GtkListStore *gtk_list_store_new (int n_columns, | ^~~~~~~~~~~~~~~~~~ setup-gui-components.cc:290:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 290 | gtk_list_store_append( store, &iter ); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here 125 | void gtk_list_store_append (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~~~~ setup-gui-components.cc:293:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] 293 | gtk_list_store_set( store, &iter, 0, c.c_str(), -1 ); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ setup-gui-components.cc:296:34: warning: 'void gtk_entry_completion_set_model(GtkEntryCompletion*, GtkTreeModel*)' is deprecated [-Wdeprecated-declarations] 296 | gtk_entry_completion_set_model(completion, GTK_TREE_MODEL(store)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:74:21: note: declared here 74 | void gtk_entry_completion_set_model (GtkEntryCompletion *completion, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from create-menu-item-actions.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from main.cc:23: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from main.cc:96: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from cc-interface.hh:39, from create-menu-item-actions.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from glade-callbacks.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_coords_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:58:50: warning: 'const char* gtk_file_chooser_get_choice(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 58 | const char *r = gtk_file_chooser_get_choice(GTK_FILE_CHOOSER(dialog), "recentering"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:182:22: note: declared here 182 | const char * gtk_file_chooser_get_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:68:50: warning: 'GListModel* gtk_file_chooser_get_files(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 68 | GListModel *lm = gtk_file_chooser_get_files(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:125:22: note: declared here 125 | GListModel * gtk_file_chooser_get_files (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_dataset_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:98:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 98 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_map_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:128:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 128 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:131:65: warning: 'const char* gtk_file_chooser_get_choice(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 131 | const char *response_id_cstr = gtk_file_chooser_get_choice(GTK_FILE_CHOOSER(dialog), "is-diff-map"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:182:22: note: declared here 182 | const char * gtk_file_chooser_get_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void open_coordinates_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:148:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 148 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 149 | parent_window, | ~~~~~~~~~~~~~~ 150 | action, | ~~~~~~~ 151 | ("_Cancel"), | ~~~~~~~~~~~~ 152 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 153 | ("_Open"), | ~~~~~~~~~~ 154 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 155 | NULL); | ~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:131: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:156:40: warning: 'void gtk_file_chooser_set_select_multiple(GtkFileChooser*, gboolean)' is deprecated [-Wdeprecated-declarations] 156 | gtk_file_chooser_set_select_multiple(GTK_FILE_CHOOSER(dialog), TRUE); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:98:22: note: declared here 98 | void gtk_file_chooser_set_select_multiple (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:173:31: warning: 'void gtk_file_chooser_add_choice(GtkFileChooser*, const char*, const char*, const char**, const char**)' is deprecated [-Wdeprecated-declarations] 173 | gtk_file_chooser_add_choice(GTK_FILE_CHOOSER(dialog), "recentering", "Recentre", options, labels); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:169:22: note: declared here 169 | void gtk_file_chooser_add_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void open_dataset_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:199:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 199 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | ("_Cancel"), GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ("_Open"), GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:207:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 207 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void auto_open_mtz_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:234:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 234 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 | ("_Cancel"), GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 | ("_Open"), GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:243:42: warning: 'gboolean gtk_file_chooser_set_current_folder(GtkFileChooser*, GFile*, GError**)' is deprecated [-Wdeprecated-declarations] 243 | gtk_file_chooser_set_current_folder(GTK_FILE_CHOOSER(dialog), f_dir, &error); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:127:22: note: declared here 127 | gboolean gtk_file_chooser_set_current_folder (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:250:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 250 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void open_map_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:269:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 269 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 270 | parent_window, | ~~~~~~~~~~~~~~ 271 | action, | ~~~~~~~ 272 | ("_Cancel"), | ~~~~~~~~~~~~ 273 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 274 | ("_Open"), | ~~~~~~~~~~ 275 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 276 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:280:31: warning: 'void gtk_file_chooser_add_choice(GtkFileChooser*, const char*, const char*, const char**, const char**)' is deprecated [-Wdeprecated-declarations] 280 | gtk_file_chooser_add_choice(GTK_FILE_CHOOSER(dialog), "is-diff-map", "Is Difference Map", NULL, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:169:22: note: declared here 169 | void gtk_file_chooser_add_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:289:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 289 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_cif_dictionary_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:349:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 349 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:354:50: warning: 'const char* gtk_file_chooser_get_choice(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 354 | const char *r = gtk_file_chooser_get_choice(GTK_FILE_CHOOSER(dialog), "create-molecule"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:182:22: note: declared here 182 | const char * gtk_file_chooser_get_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void import_cif_dictionary_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:375:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 375 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 | ("_Cancel"), GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 | ("_Open"), GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:382:31: warning: 'void gtk_file_chooser_add_choice(GtkFileChooser*, const char*, const char*, const char**, const char**)' is deprecated [-Wdeprecated-declarations] 382 | gtk_file_chooser_add_choice(GTK_FILE_CHOOSER(dialog), "create-molecule", "Create Molecule", options, labels); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:169:22: note: declared here 169 | void gtk_file_chooser_add_choice (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:387:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 387 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_save_state_dialog_response(GtkDialog*, int)': create-menu-item-actions.cc:579:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 579 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void save_state_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:600:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 600 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Save State", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 601 | parent_window, | ~~~~~~~~~~~~~~ 602 | action, | ~~~~~~~ 603 | ("Cancel"), | ~~~~~~~~~~~ 604 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 605 | ("Save"), | ~~~~~~~~~ 606 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 607 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:611:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 611 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_save_views_dialog_response(GtkDialog*, int)': create-menu-item-actions.cc:623:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 623 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_save_views_clicked(GtkButton*, gpointer)': create-menu-item-actions.cc:636:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 636 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Save Views", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 637 | parent_window, | ~~~~~~~~~~~~~~ 638 | action, | ~~~~~~~ 639 | ("Cancel"), | ~~~~~~~~~~~ 640 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 641 | ("Save"), | ~~~~~~~~~ 642 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 643 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_save_coords_filechooser_dialog_response(GtkDialog*, int)': glade-callbacks.cc:868:48: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 868 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ create-menu-item-actions.cc:647:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 647 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_save_coords_dialog_save_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:915:67: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 915 | GtkWidget *file_chooser_dialog = gtk_file_chooser_dialog_new("Save Coordinates", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 916 | parent_window, | ~~~~~~~~~~~~~~ 917 | action, | ~~~~~~~ 918 | ("_Cancel"), | ~~~~~~~~~~~~ 919 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 920 | ("_Save"), | ~~~~~~~~~~ 921 | GTK_RESPONSE_YES, | ~~~~~~~~~~~~~~~~~ 922 | NULL); | ~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:131: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_run_script_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:1108:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 1108 | GFile *file = gtk_file_chooser_get_file(chooser); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void run_script_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:1131:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 1131 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Run Script File", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 1132 | parent_window, | ~~~~~~~~~~~~~~ 1133 | action, | ~~~~~~~ 1134 | ("_Cancel"), | ~~~~~~~~~~~~ 1135 | GTK_RESPONSE_CANCEL, | ~~~~~~~~~~~~~~~~~~~~ 1136 | ("_Open"), | ~~~~~~~~~~ 1137 | GTK_RESPONSE_ACCEPT, | ~~~~~~~~~~~~~~~~~~~~ 1138 | NULL); | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from probe-clash-score.hh:32, from c-interface-ligands-swig.hh:35, from coot_wrap_python.cc:3466: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ create-menu-item-actions.cc: In function 'void screenshot_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:2240:38: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 2240 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(file_chooser), "coot-screendump.tga"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void show_validation_graphs_dialog(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:2393:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2393 | gtk_combo_box_set_active(GTK_COMBO_BOX(model_combobox), imol); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void ramachandran_plot_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:2408:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 2408 | gtk_combo_box_set_active(GTK_COMBO_BOX(model_combobox), imol_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_phs_coordinates_filechooserdialog1_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:5193:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 5193 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(phs_filechooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_screendump_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:5301:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 5301 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(file_chooser)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_residue_editor_select_monomer_type_ok_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:5473:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 5473 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combo_box)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_export_map_file_chooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6044:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6044 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_geman_mcclure_alpha_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6231:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6231 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_lennard_jones_epsilon_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6247:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6247 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6248:50: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6248 | int active_item_idx = gtk_combo_box_get_active(combobox); // save it for set active item next time | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_rama_restraints_weight_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6258:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6258 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6259:50: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6259 | int active_item_idx = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_torsion_weight_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6270:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6270 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6271:50: warning: 'int gtk_combo_box_get_active(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6271 | int active_item_idx = gtk_combo_box_get_active(combobox); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:84:15: note: declared here 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_refine_params_overall_weight_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6282:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6282 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_simple_refmac_mtz_file_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:6480:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] 6480 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(w), filterselect); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_simple_refmac_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6494:43: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6494 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6514:42: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6514 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(file_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:55:15: note: declared here 55 | void gtk_combo_box_text_remove_all (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6515:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6515 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(file_combobox), file_name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6516:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6516 | gtk_combo_box_set_active(GTK_COMBO_BOX(file_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_cif_dictionary_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6585:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6585 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_validation_graph_model_combobox_changed(GtkComboBox*, gpointer)': glade-callbacks.cc:6607:37: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6607 | if (gtk_combo_box_get_active_iter(self, &iter)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6609:49: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6609 | gtk_tree_model_get(gtk_combo_box_get_model(self),&iter,1,&new_active_model,-1); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6609:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 6609 | gtk_tree_model_get(gtk_combo_box_get_model(self),&iter,1,&new_active_model,-1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkcellarea.h:30, from /usr/include/gtk-4.0/gtk/gtk.h:64: /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_validation_graph_chain_id_combobox_changed(GtkComboBoxText*, gpointer)': glade-callbacks.cc:6619:66: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6619 | auto chain_id = std::string(gtk_combo_box_text_get_active_text(self)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_ramachandran_plot_molecule_chooser_ok_button_clicked(GtkButton*, gpointer)': glade-callbacks.cc:6698:37: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6698 | if (gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:89:15: note: declared here 89 | gboolean gtk_combo_box_get_active_iter (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6700:49: warning: 'GtkTreeModel* gtk_combo_box_get_model(GtkComboBox*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6700 | gtk_tree_model_get(gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)),&iter,1,&imol_active,-1); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:100:15: note: declared here 100 | GtkTreeModel *gtk_combo_box_get_model (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6700:25: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 6700 | gtk_tree_model_get(gtk_combo_box_get_model(GTK_COMBO_BOX(combobox)),&iter,1,&imol_active,-1); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from glade-callbacks-main-window.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from glade-callbacks-main-window.cc:59: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ glade-callbacks-main-window.cc: In function 'void on_save_coordinates_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:403:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 403 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-main-window.cc: In function 'void on_dataset_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:432:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 432 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks-main-window.cc: In function 'void on_map_name_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:463:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 463 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, from new-startup.cc:29: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ new-startup.cc: In function 'void init_framebuffers(GtkWidget*)': new-startup.cc:60:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 60 | gtk_widget_get_allocation(GTK_WIDGET(glarea), &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,--export-dynamic -Wl,-z,relro -o Coot main.o glade-callbacks.o glade-callbacks-main-window.o glade-callbacks-preferences.o glade-callbacks-shader-settings.o new-startup.o setup-gui-components.o create-menu-item-actions.o libcootsumo.la ../density-contour/libcoot-isosurface.la ../layla/libcoot-layla.la ../coot-utils/libcoot-map-utils.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lcurl -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lepoxy -L/usr/lib/aarch64-linux-gnu -lpython3.13 libtool: link: g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,--export-dynamic -Wl,-z -Wl,relro -o .libs/Coot main.o glade-callbacks.o glade-callbacks-main-window.o glade-callbacks-preferences.o glade-callbacks-shader-settings.o new-startup.o setup-gui-components.o create-menu-item-actions.o ./.libs/libcootsumo.so ../density-contour/.libs/libcoot-isosurface.so ../layla/.libs/libcoot-layla.so ../coot-utils/.libs/libcoot-map-utils.so ../coords/.libs/libcoot-coords.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lcurl -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lepoxy -L/usr/lib/aarch64-linux-gnu -lpython3.13 -fopenmp /bin/sh ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined libcootsumo.la ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../geometry/libcoot-geometry.la ../pli/libcoot-pli.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o _coot.la -rpath /usr/lib/python3/dist-packages coot.lo coot_wrap_python.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot.o .libs/coot_wrap_python.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/src/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcootsumo.so ../coot-utils/.libs/libcoot-coord-utils.so ../coords/.libs/libcoot-coords.so ../geometry/.libs/libcoot-geometry.so ../pli/.libs/libcoot-pli.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot.so.0 -o .libs/_coot.so.0.0.0 libtool: link: (cd ".libs" && rm -f "_coot.so.0" && ln -s "_coot.so.0.0.0" "_coot.so.0") libtool: link: (cd ".libs" && rm -f "_coot.so" && ln -s "_coot.so.0.0.0" "_coot.so") libtool: link: ( cd ".libs" && rm -f "_coot.la" && ln -s "../_coot.la" "_coot.la" ) make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' Making all in ui make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_build --buildsystem cmake cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/coot-1.1.09+dfsg -B/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/cootapi.dir/build.make CMakeFiles/cootapi.dir/depend make -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg 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CMakeFiles/nanobind-static.dir/build make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/cootapi.dir/build.make CMakeFiles/cootapi.dir/build [ 0%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o [ 1%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o [ 1%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o [ 1%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o [ 2%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o [ 2%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o [ 2%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB 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-I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -c /usr/share/nanobind/src/nb_type.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -c /usr/share/nanobind/src/nb_enum.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -c /usr/share/nanobind/src/nb_ndarray.cpp make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -c /usr/share/nanobind/src/nb_static_property.cpp [ 3%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -c /usr/share/nanobind/src/common.cpp /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -c /usr/share/nanobind/src/error.cpp [ 3%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -c /usr/share/nanobind/src/trampoline.cpp [ 3%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o [ 3%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o [ 3%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/cod-types.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/cod-types.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/svg-molecule.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/svg-molecule.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -c /usr/share/nanobind/src/implicit.cpp [ 3%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/cod-atom-types.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/cod-atom-types.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/cod-atom-types.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/cod-atom-types.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/cod-atom-types.cc [ 4%] Building CXX object CMakeFiles/cootapi.dir/lidia-core/chemical-feature-clusters.cc.o [ 4%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCreator.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCreator.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXCreator.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXCreator.cpp [ 8%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXException.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXException.cpp [ 8%] Building CXX object 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/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXSphereTriangleEdge.cpp [ 11%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurface.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurface.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurface.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurface.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXSurface.cpp [ 11%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXSurfaceMaker.cpp [ 11%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXSurfaceVertex.cpp.o /usr/bin/c++ 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXUtils.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXUtils.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXUtils.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/CXXUtils.cpp [ 13%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXSurface/CXXVCN.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/BoxSectionPrimitive.cpp [ 14%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/ColorRule.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o -MF CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o.d -o CMakeFiles/cootapi.dir/api/add-terminal-residue.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/add-terminal-residue.cc [ 25%] Building CXX object CMakeFiles/cootapi.dir/api/interfaces.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/interfaces.cc.o -MF CMakeFiles/cootapi.dir/api/interfaces.cc.o.d -o CMakeFiles/cootapi.dir/api/interfaces.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/interfaces.cc [ 25%] Building CXX object CMakeFiles/cootapi.dir/api/instancing.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/instancing.cc.o -MF CMakeFiles/cootapi.dir/api/instancing.cc.o.d -o CMakeFiles/cootapi.dir/api/instancing.cc.o -c 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-DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/colour-functions.cc.o -MF CMakeFiles/cootapi.dir/api/colour-functions.cc.o.d -o CMakeFiles/cootapi.dir/api/colour-functions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/colour-functions.cc [ 26%] Building CXX object CMakeFiles/cootapi.dir/api/coot-colour.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-colour.cc.o -MF 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-g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-backup.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-backup.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-backup.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc [ 26%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/api/add-terminal-residue.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds-instanced.cc [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-change-chain-id.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-moltris.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-validation.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc:37: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-change-chain-id.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:174, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc:38: /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds-instanced.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds.cc:39: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-moltris.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-merge-molecules.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-refine.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-validation.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-merge-molecules.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-refine.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-replace-fragment.cc [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-blender.cc [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-blender.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-replace-fragment.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-blender.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-blender.cc:3: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-gltf.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-bucca-ml-growing.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-maps.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc:40: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-mmrrcc.cc [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-superpose.cc [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-modelling.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-gltf.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o -MF CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o.d -o CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/phi-psi-prob.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -MF CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o.d -o CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/moorhen-h-bonds.cc [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -MF CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o.d -o CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/rama-plot-phi-psi.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-bucca-ml-growing.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-maps.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/wligand.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-mmrrcc.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-superpose.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-modelling.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/daca.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/daca.cc.o -MF CMakeFiles/cootapi.dir/analysis/daca.cc.o.d -o CMakeFiles/cootapi.dir/analysis/daca.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/daca.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:6: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/moorhen-h-bonds.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/daca.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o -MF CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o.d -o CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/kolmogorov.cc /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc: In member function 'float molecules_container_t::fit_to_map_by_random_jiggle_with_blur_using_cid(int, int, const std::string&, float, int, float)': /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:414:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 414 | auto p = coot::util::mean_and_variance(xmap); | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/kolmogorov.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/stats.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/stats.cc.o -MF CMakeFiles/cootapi.dir/analysis/stats.cc.o.d -o CMakeFiles/cootapi.dir/analysis/stats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.cc [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o -MF CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o.d -o CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/bfkurt.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/mogul.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/mogul.cc.o -MF CMakeFiles/cootapi.dir/analysis/mogul.cc.o.d -o CMakeFiles/cootapi.dir/analysis/mogul.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/mogul.cc [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o -MF CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o.d -o CMakeFiles/cootapi.dir/analysis/b-factor-histogram.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/b-factor-histogram.cc [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o -MF CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o.d -o CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/typed-distances.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/mogul.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/mogul.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/b-factor-histogram.cc:288: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/cablam.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/cablam.cc.o -MF CMakeFiles/cootapi.dir/analysis/cablam.cc.o.d -o CMakeFiles/cootapi.dir/analysis/cablam.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/cablam.cc [ 35%] Building CXX object CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o -MF CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/density-contour-triangles.cc [ 35%] Building CXX object CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o -MF CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o.d -o CMakeFiles/cootapi.dir/density-contour/Vectors.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/Vectors.cpp [ 35%] Building CXX object CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o -MF CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o.d -o CMakeFiles/cootapi.dir/density-contour/CIsoSurface.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/CIsoSurface.cpp [ 36%] Building CXX object CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o -MF CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/occlusion.cc [ 36%] Building CXX object CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o -MF CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/gaussian-surface.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/density-contour/density-contour-triangles.cc:155: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 36%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/quat.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/quat.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/density-contour/CIsoSurface.cpp:1244: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 36%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/mgtree.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/mgtree.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/density-contour/gaussian-surface.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 37%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/cartesian.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/cartesian.cc [ 37%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/geomutil.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/geomutil.cc [ 37%] Building CXX object CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o -MF CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o.d -o CMakeFiles/cootapi.dir/ccp4mg-utils/matrix.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/matrix.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o -MF CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o.d -o CMakeFiles/cootapi.dir/skeleton/dm-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/skeleton/dm-utils.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o -MF CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o.d -o CMakeFiles/cootapi.dir/skeleton/BuildCas.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/skeleton/BuildCas.cc [ 38%] Building CXX object CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/skeleton/graphical_skel.cc.o -MF 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/pepflip.cc.o -MF CMakeFiles/cootapi.dir/ideal/pepflip.cc.o.d -o CMakeFiles/cootapi.dir/ideal/pepflip.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/pepflip.cc [ 39%] Building CXX object CMakeFiles/cootapi.dir/ideal/parallel-planes.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/parallel-planes.cc.o -MF CMakeFiles/cootapi.dir/ideal/parallel-planes.cc.o.d -o CMakeFiles/cootapi.dir/ideal/parallel-planes.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/parallel-planes.cc [ 39%] Building CXX object CMakeFiles/cootapi.dir/ideal/simple-restraint.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL 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CMakeFiles/cootapi.dir/ideal/ng.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/ng.cc.o -MF CMakeFiles/cootapi.dir/ideal/ng.cc.o.d -o CMakeFiles/cootapi.dir/ideal/ng.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/parallel-planes.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 39%] Building CXX object CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o -MF CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o.d -o CMakeFiles/cootapi.dir/ideal/torsion-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/torsion-bonds.cc [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o -MF CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o.d -o CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/chi-squareds.cc [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o -MF CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o.d -o CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/trans-peptide.cc [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o -MF CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o.d -o CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc:50: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/parallel-planes.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/make-restraints.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/torsion-bonds.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc: In member function 'std::pair coot::simple_restraint::distortion(mmdb::Atom**, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc:4068:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4068 | coot::simple_restraint::distortion(mmdb::PAtom *atoms, const double &lj_epsilon) const { | ^~~~~ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chi-squareds.cc:41: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/trans-peptide.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -MF CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o.d -o CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/pull-restraint.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/neutron.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/neutron.cc.o -MF CMakeFiles/cootapi.dir/ideal/neutron.cc.o.d -o CMakeFiles/cootapi.dir/ideal/neutron.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/neutron.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc: In member function 'void coot::restraints_container_t::analyze_for_bad_restraints(coot::restraint_type_t, double)': /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc:2354:97: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2354 | std::pair distortion_pair = rest.distortion(atom, lennard_jones_epsilon); // 2nd arg is not used for bonds | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/make-restraints.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -MF CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o.d -o CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/coot-compare-residues.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/pull-restraint.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/neutron.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/link-restraints.cc [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/mods.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/mods.cc.o -MF CMakeFiles/cootapi.dir/ideal/mods.cc.o.d -o CMakeFiles/cootapi.dir/ideal/mods.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/mods.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o -MF CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o.d -o CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints-kk.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/coot-compare-residues.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/chirals.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/chirals.cc.o -MF CMakeFiles/cootapi.dir/ideal/chirals.cc.o.d -o CMakeFiles/cootapi.dir/ideal/chirals.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/link-restraints.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mods.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints-kk.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/gradients.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/gradients.cc.o -MF CMakeFiles/cootapi.dir/ideal/gradients.cc.o.d -o CMakeFiles/cootapi.dir/ideal/gradients.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/gradients.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -MF CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o.d -o CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.cc [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/flanking.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/flanking.cc.o -MF CMakeFiles/cootapi.dir/ideal/flanking.cc.o.d -o CMakeFiles/cootapi.dir/ideal/flanking.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/flanking.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/distortion.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/distortion.cc.o -MF CMakeFiles/cootapi.dir/ideal/distortion.cc.o.d -o CMakeFiles/cootapi.dir/ideal/distortion.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/distortion.cc [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -MF CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o.d -o CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint-kk.cc [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -MF CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o.d -o CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -MF CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o.d -o CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/phi-psi.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/flanking.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/gradients.cc:39: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/lograma.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/lograma.cpp.o -MF CMakeFiles/cootapi.dir/ideal/lograma.cpp.o.d -o CMakeFiles/cootapi.dir/ideal/lograma.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/lograma.cpp /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o -MF CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o.d -o CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/process-dfs-in-range.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/distortion.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 46%] Building CXX object CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -MF CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o.d -o CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint-kk.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:37: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1393:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1393 | const zo::rama_table_set &zorts) const { | ^~~~~ [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/align-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/align-utils.cc.o -MF CMakeFiles/cootapi.dir/utils/align-utils.cc.o.d -o CMakeFiles/cootapi.dir/utils/align-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/align-utils.cc [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o -MF CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o.d -o CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/atomic-numbers.cc [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/backward.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/backward.cpp.o -MF CMakeFiles/cootapi.dir/utils/backward.cpp.o.d -o CMakeFiles/cootapi.dir/utils/backward.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/backward.cpp [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/colour-holder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -MF CMakeFiles/cootapi.dir/utils/colour-holder.cc.o.d -o CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/colour-holder.cc [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -MF CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o.d -o CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-fasta.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/atomic-numbers.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/process-dfs-in-range.cc:37: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/coot-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -MF CMakeFiles/cootapi.dir/utils/coot-utils.cc.o.d -o CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.cc [ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/dodec.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/dodec.cc.o -MF CMakeFiles/cootapi.dir/utils/dodec.cc.o.d -o CMakeFiles/cootapi.dir/utils/dodec.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/dodec.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-fasta.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/radix.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/radix.cc.o -MF CMakeFiles/cootapi.dir/utils/radix.cc.o.d -o CMakeFiles/cootapi.dir/utils/radix.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/radix.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:871:71: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 871 | std::pair grads = zorts.df(pp, rt); | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o -MF CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o.d -o CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/gdk-keysyms.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.cc:59: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o -MF CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o.d -o CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/hsv-rgb.cc [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o -MF CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o.d -o CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/pir-alignment.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/gdk-keysyms.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o -MF CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o.d -o CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/setup-syminfo.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/pir-alignment.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/hsv-rgb.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/setup-syminfo.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2613 | return zo_rama.df(residue_type, phir, psir); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/split-indices.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/split-indices.cc.o -MF CMakeFiles/cootapi.dir/utils/split-indices.cc.o.d -o CMakeFiles/cootapi.dir/utils/split-indices.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/split-indices.cc [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/logging.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/logging.cc.o -MF CMakeFiles/cootapi.dir/utils/logging.cc.o.d -o CMakeFiles/cootapi.dir/utils/logging.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/logging.cc [ 50%] Building CXX object CMakeFiles/cootapi.dir/utils/threads.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/threads.cc.o -MF CMakeFiles/cootapi.dir/utils/threads.cc.o.d -o CMakeFiles/cootapi.dir/utils/threads.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/threads.cc [ 50%] Building CXX object CMakeFiles/cootapi.dir/utils/win-compat.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/win-compat.cc.o -MF CMakeFiles/cootapi.dir/utils/win-compat.cc.o.d -o CMakeFiles/cootapi.dir/utils/win-compat.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/win-compat.cc [ 50%] Building CXX object CMakeFiles/cootapi.dir/db-main/db-strands.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/db-main/db-strands.cc.o -MF CMakeFiles/cootapi.dir/db-main/db-strands.cc.o.d -o CMakeFiles/cootapi.dir/db-main/db-strands.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-strands.cc [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o -MF CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o.d -o CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/residue-distortions.cc [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o -MF CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o.d -o CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/threads.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o -MF CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o.d -o CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/sequence-assignment.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-strands.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/high-res.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/high-res.cc.o -MF CMakeFiles/cootapi.dir/high-res/high-res.cc.o.d -o CMakeFiles/cootapi.dir/high-res/high-res.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/high-res.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o -MF CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o.d -o CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/flev-annotations.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/residue-distortions.cc:21: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -MF CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o.d -o CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/protein-ligand-interactions.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/high-res/sequence-assignment.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/high-res.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:833:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 833 | coot::crankshaft::optimize_a_triple::df(const gsl_vector *v, | ^~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/high-res.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -MF CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o.d -o CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/sdf-interface.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cmtz-interface.cc [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/lidia-core-functions.cc [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/merge-atom-selections.cc [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-least-squares.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-least-squares.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/diff-diff-map-peaks.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/merge-atom-selections.cc:34: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/pli/sdf-interface.cc:147: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/gltf-export.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -MF CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o.d -o CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shiftfield.cpp [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/stack-and-pair.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shiftfield.h:31, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::F_phi; C = clipper::datatypes::Compute_scale_u_aniso >; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/spherical-harmonics.cc [ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/peak-search-from-list.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc:915: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/helix-analysis.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/segmap.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cablam-markup.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/fib-sphere.cc [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/find-water-baddies.cc [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/blob-line.cc [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-glyco.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cablam-markup.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils.cc [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/merge-molecules.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-glyco.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/blob-line.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils.cc:34: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/texture-as-floats.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/find-water-baddies.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK 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CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.cc [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/water-coordination.cc [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bonded-pairs.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/c-beta-deviations.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/texture-as-floats.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tools.cc [ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-rama.cc [ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/secondary-structure-headers.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-rama.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/helix-like.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/helix-like.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/helix-like.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/helix-like.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/helix-like.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/polar-atoms.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/plane-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/plane-utils.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/pae.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/pae.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/pae.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/pae.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pae.cc [ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-tree-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-tree-extras.cc [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-map-heavy.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-heavy.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pae.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/jed-flip.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/jed-flip.cc [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/pepflip-using-difference-map.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pepflip-using-difference-map.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-tree-extras.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-heavy.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 62%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-overlaps.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-overlaps.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pepflip-using-difference-map.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/jed-flip.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/jed-flip.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bricks.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-overlaps.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/mutate.cc [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/elastic.cc [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-map-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/elastic.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/mutate.cc:644: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-h-bonds.cc [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-nucleotides.cc [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/glyco-torsions.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:39: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-nucleotides.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:973:63: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/glyco-torsions.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:3842: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/core/hkl_compute.h:48, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:682:39: required from here 682 | fphis_out[hri] = fphis_in[hkl]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:23: /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = const double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4416:45: required from here 4416 | data.push_back(std::make_pair(A_data[i].first, y)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4501:87: required from here 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4656:69: required from here 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/fast-eigens.cc /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:973:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^~~~ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In lambda function: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'void coot::util::reverse_map(clipper::Xmap*)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4713:55: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4713 | std::pair mv = mean_and_variance(xmap); | ^ [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-shelx-ins.cc [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contacts-by-bricks.cc [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/lsq-improve.cc [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/trim.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/trim.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/trim.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-shelx-ins.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contacts-by-bricks.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/trim.cc:21: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o -MF CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In lambda function: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-lsq.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-lsq.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In lambda function: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4501:87: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.h:31, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:27: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:153:81: required from here 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:209:29: required from here 209 | fphi[ih] = fc[ih.hkl()]; | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:153:67: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:209:16: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-lsq.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-heavy.hh:28, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/strand-fragments.cc [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bonded-atoms.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc: In constructor 'coot::util::fffear_search::fffear_search(mmdb::Manager*, int, const clipper::Xmap&, float, bool)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc:159:70: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 159 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/fragment-container.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 121 | coot::shift_field_b_factor_refinement(const clipper::HKL_data< clipper::datatypes::F_sigF > &fo0, | ^~~~ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:209:29: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; | ^ [ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/positron.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/positron.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/positron.cc [ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/maps-spherical.cc [ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/peak-search.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/positron.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/xmap-stats.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/sfcalc-genmap.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/maps-spherical.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/reduce.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contact-info.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/reduce.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/hole.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/hole.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/sfcalc-genmap.cc:30: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_abcd_from_phifom; T = clipper::datatypes::ABCD]': /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::ABCD' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/slurp-map.cc [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/clipper_instance.h:49, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc:1096:38: required from here 1096 | if (!my_fsigf[ih.hkl()].missing()) { | ^ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc: In member function 'std::pair coot::hole::optimize_point(const clipper::Coord_orth&, int)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc:253:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 253 | coot::hole::optimize_point(const clipper::Coord_orth &pt, int selhnd) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/slurp-map.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/exp-fit.cc [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cylinder.cc [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cylinder-with-rotation-translation.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cylinder-with-rotation-translation.cc [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/prideout-octasphere.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/prideout-octasphere.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/oct.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/oct.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/oct.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/oct.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/oct.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/shapes.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shapes.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/simple-mesh.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/simple-mesh.cc [ 72%] Building CXX object CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o -MF CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o.d -o CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo-bonds.cc [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o -MF CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o.d -o CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines_ext.cc [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/utils.cc.o -MF CMakeFiles/cootapi.dir/coords/utils.cc.o.d -o CMakeFiles/cootapi.dir/coords/utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/utils.cc [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -MF CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o.d -o CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo-bonds.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'bool coot::util::map_fill_from_mtz(clipper::Xmap*, std::string, std::string, std::string, std::string, short int, float, short int, float)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:59:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 59 | coot::util::map_fill_from_mtz(clipper::Xmap *xmap, | ^~~~ [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.cc [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/Cartesian.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -MF CMakeFiles/cootapi.dir/coords/Cartesian.cc.o.d -o CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Cartesian.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/loop-path.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/loop-path.cc.o -MF CMakeFiles/cootapi.dir/coords/loop-path.cc.o.d -o CMakeFiles/cootapi.dir/coords/loop-path.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/loop-path.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc:48: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc:50: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.cc:46: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/coot-close.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/coot-close.cc.o -MF CMakeFiles/cootapi.dir/coords/coot-close.cc.o.d -o CMakeFiles/cootapi.dir/coords/coot-close.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/coot-close.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/cos-sin.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/cos-sin.cc.o -MF CMakeFiles/cootapi.dir/coords/cos-sin.cc.o.d -o CMakeFiles/cootapi.dir/coords/cos-sin.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/cos-sin.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o -MF CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o.d -o CMakeFiles/cootapi.dir/coords/rotamer-markup.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/rotamer-markup.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-extras.cc [ 76%] Building CXX object CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o -MF CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o.d -o CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/rotamer-markup.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-link.cc [ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-extras.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/main-chain.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/main-chain.cc.o -MF CMakeFiles/cootapi.dir/geometry/main-chain.cc.o.d -o CMakeFiles/cootapi.dir/geometry/main-chain.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/main-chain.cc [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-mon-lib.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-geometry.cc [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o -MF CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/dictionary-residue.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc:41: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-link.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o -MF CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/dict-utils.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-mon-lib.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -MF CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o.d -o CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/read-sbase.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o -MF CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o.d -o CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/hydrophobic.cc [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o -MF CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o.d -o CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/energy-lib.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/dictionary-residue.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-geometry.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/dict-utils.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/read-sbase.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/energy-lib.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o -MF CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o.d -o CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/srs-interface.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/srs-interface.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o -MF CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o.d -o CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/residue-and-atom-specs.cc [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-geometry-mmdb.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/residue-and-atom-specs.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o -MF CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o.d -o CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/mol-utils.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/dreiding.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dreiding.cc.o -MF CMakeFiles/cootapi.dir/geometry/dreiding.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dreiding.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/dreiding.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o -MF CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o.d -o CMakeFiles/cootapi.dir/geometry/chem_mods.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/chem_mods.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/link.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/link.cc.o -MF CMakeFiles/cootapi.dir/geometry/link.cc.o.d -o CMakeFiles/cootapi.dir/geometry/link.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/link.cc [ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o -MF CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o.d -o CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/lbg-graph.cc [ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -MF CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o.d -o CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/glyco-tools.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/chem_mods.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/link.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o -MF CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o.d -o CMakeFiles/cootapi.dir/geometry/mol-utils-2.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/mol-utils-2.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/glyco-tools.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 82%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-donor-acceptors.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-donor-acceptors.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-donor-acceptors.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-donor-acceptors.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-donor-acceptors.cc [ 82%] Building CXX object CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o -MF CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o.d -o CMakeFiles/cootapi.dir/geometry/intercept-3GP.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/intercept-3GP.cc [ 82%] Building CXX object CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o -MF CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o.d -o CMakeFiles/cootapi.dir/build/CalphaBuild.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/build/CalphaBuild.cc [ 82%] Building CXX object CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o -MF CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o.d -o CMakeFiles/cootapi.dir/mini-mol/mini-mol-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.hh:22, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 83%] Building CXX object CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK 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CMakeFiles/cootapi.dir/mini-mol/mini-mol.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 83%] Building CXX object CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" 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Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 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CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o.d -o CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/angles/AngleInfo-theta_2-autogen.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 87%] Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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/build/reproducible-path/coot-1.1.09+dfsg/angles/AngleInfo.cc [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/dipole.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/dipole.cc.o -MF CMakeFiles/cootapi.dir/ligand/dipole.cc.o.d -o CMakeFiles/cootapi.dir/ligand/dipole.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/dipole.cc [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o -MF CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o.d -o CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/chi-angles.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/dipole.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -MF CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o.d -o CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/monomer-utils.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-score-card.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o -MF CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o.d -o CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/chi-angles-autogen.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o -MF CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o.d -o CMakeFiles/cootapi.dir/ligand/helix-placement.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/helix-placement.cc [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/backrub-rotamer.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-score-card.hh:31, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-score-card.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/chi-angles.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -MF CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o.d -o CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/dunbrack.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:60: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/dunbrack.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:69: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -MF CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o.d -o CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/primitive-chi-angles.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:72: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/helix-placement.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o -MF CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer-tables.cc [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o -MF CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o.d -o CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc: In function 'std::pair > coot::get_clash_score(const minimol::molecule&, atom_selection_container_t, int)': /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc:596:76: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 596 | std::pair rotamer_info = a_rotamer.get_pos(); | ^ [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -MF CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o.d -o CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/richardson-rotamers.cc [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligands-db.cc [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer-tables.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:55: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc:38: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc: In member function 'std::pair coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager*) const': /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc:176:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 176 | coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager *mol) const { | ^~~~~ [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o -MF CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o.d -o CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.cc /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc:1293:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~~ [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o -MF CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o.d -o CMakeFiles/cootapi.dir/ligand/base-pairing.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/base-pairing.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o -MF CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ideal-rna.cc /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc:2408:64: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2408 | std::pair mi = s.median_and_iqr(); | ^ [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o -MF CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o.d -o CMakeFiles/cootapi.dir/ligand/wiggly-ligand.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/wiggly-ligand.cc [ 92%] Building CXX object CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/torsion-general.cc.o -MF 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/joining-residues.cc.o -MF CMakeFiles/cootapi.dir/ligand/joining-residues.cc.o.d -o CMakeFiles/cootapi.dir/ligand/joining-residues.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/joining-residues.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/richardson-rotamer.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/richardson-rotamer.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/side-chain.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/side-chain.cc.o -MF CMakeFiles/cootapi.dir/ligand/side-chain.cc.o.d -o CMakeFiles/cootapi.dir/ligand/side-chain.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o -MF CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rigid-body.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/rigid-body.cc [ 93%] Building CXX object CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o -MF CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o.d -o CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/smith-waterman.cc [ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -MF CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o.d -o CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rigid-body.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rigid-body.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/wiggly-ligand.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -MF CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o.d -o CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/fast-ss-search.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/rotamer.cc.o In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/joining-residues.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/smith-waterman.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.hh:22, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/fast-ss-search.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 95%] Building CXX object CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -MF CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o.d -o CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/src/coot-nomenclature.cc /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc: In constructor 'coot::tube_finder_t::tube_finder_t(const clipper::Xmap&)': /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc:45:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mv = util::mean_and_variance(blurred_xmap); | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 95%] Building CXX object CMakeFiles/cootapi.dir/db-main/db-main.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL 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-DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/compat/getopt.cc.o -MF CMakeFiles/cootapi.dir/compat/getopt.cc.o.d -o CMakeFiles/cootapi.dir/compat/getopt.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/compat/getopt.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-main.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 95%] Building CXX object CMakeFiles/cootapi.dir/compat/getopt1.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 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/build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc:1293:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~ [ 96%] Building CXX object CMakeFiles/cootapi.dir/src/gl-matrix.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/src/gl-matrix.cc.o -MF CMakeFiles/cootapi.dir/src/gl-matrix.cc.o.d -o CMakeFiles/cootapi.dir/src/gl-matrix.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/src/gl-matrix.cc [ 96%] Building CXX object CMakeFiles/cootapi.dir/ideal/write-png.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/write-png.cc.o -MF CMakeFiles/cootapi.dir/ideal/write-png.cc.o.d -o CMakeFiles/cootapi.dir/ideal/write-png.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/write-png.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/write-png.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair 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96%] Built target cootapi make -f CMakeFiles/chapi.dir/build.make CMakeFiles/chapi.dir/depend make -f CMakeFiles/findligand.dir/build.make CMakeFiles/findligand.dir/depend make -f CMakeFiles/findwaters.dir/build.make CMakeFiles/findwaters.dir/depend make -f CMakeFiles/coot-mini-rsr.dir/build.make CMakeFiles/coot-mini-rsr.dir/depend make -f CMakeFiles/test-molecules-container.dir/build.make CMakeFiles/test-molecules-container.dir/depend make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/chapi.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/findligand.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/findwaters.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/coot-mini-rsr.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles/test-molecules-container.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/findligand.dir/build.make CMakeFiles/findligand.dir/build make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/chapi.dir/build.make CMakeFiles/chapi.dir/build make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/findwaters.dir/build.make CMakeFiles/findwaters.dir/build make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/coot-mini-rsr.dir/build.make CMakeFiles/coot-mini-rsr.dir/build make -f CMakeFiles/test-molecules-container.dir/build.make CMakeFiles/test-molecules-container.dir/build make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object CMakeFiles/findligand.dir/ligand/find-ligand.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/findligand.dir/ligand/find-ligand.cc.o -MF CMakeFiles/findligand.dir/ligand/find-ligand.cc.o.d -o CMakeFiles/findligand.dir/ligand/find-ligand.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/find-ligand.cc [ 97%] Building CXX object CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o [ 97%] Building CXX object CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o [ 97%] Building CXX object CMakeFiles/findwaters.dir/ligand/find-waters.cc.o [ 97%] Building CXX object CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o [ 98%] Building CXX object CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o [ 98%] Building CXX object CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o /usr/bin/c++ 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-I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o -MF CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o -MF CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/test-molecules-container.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o -MF CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/lucrezia-tests.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/find-waters.cc:45: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/find-ligand.cc:46: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:56: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:58: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/lucrezia-tests.hh:5, from /build/reproducible-path/coot-1.1.09+dfsg/api/lucrezia-tests.cc:2: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.hh:23, from /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-nanobind.cc:9: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:174, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:60: /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:66: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, from /build/reproducible-path/coot-1.1.09+dfsg/api/test-molecules-container.cc:7: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ [ 98%] Linking CXX executable findwaters /usr/bin/cmake -E cmake_link_script CMakeFiles/findwaters.dir/link.txt --verbose=1 In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/findwaters.dir/link.d "CMakeFiles/findwaters.dir/ligand/find-waters.cc.o" -o findwaters -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target findwaters In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:41: /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ [ 98%] Linking CXX executable findligand /usr/bin/cmake -E cmake_link_script CMakeFiles/findligand.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/findligand.dir/link.d "CMakeFiles/findligand.dir/ligand/find-ligand.cc.o" -o findligand -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target findligand [ 99%] Linking CXX executable coot-mini-rsr /usr/bin/cmake -E cmake_link_script CMakeFiles/coot-mini-rsr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/coot-mini-rsr.dir/link.d "CMakeFiles/coot-mini-rsr.dir/ideal/mini-rsr.cc.o" -o coot-mini-rsr -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target coot-mini-rsr [ 99%] Linking CXX shared module chapi.cpython-313-aarch64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/chapi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/chapi.dir/link.d -Wl,-z,relro -shared -o chapi.cpython-313-aarch64-linux-gnu.so "CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o" -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu: libnanobind-static.a libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so /usr/lib/aarch64-linux-gnu/libdw.so /usr/lib/aarch64-linux-gnu/libelf.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target chapi [100%] Linking CXX executable test-molecules-container /usr/bin/cmake -E cmake_link_script CMakeFiles/test-molecules-container.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test-molecules-container.dir/link.d "CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o" "CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o" "CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o" -o test-molecules-container -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libssm.so /usr/lib/aarch64-linux-gnu/libclipper-minimol.so /usr/lib/aarch64-linux-gnu/libclipper-mmdb.so /usr/lib/aarch64-linux-gnu/libclipper-cif.so /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libclipper-contrib.so /usr/lib/libsfftw.so /usr/lib/libsrfftw.so /usr/lib/aarch64-linux-gnu/libmmdb2.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libgsl.so /usr/lib/aarch64-linux-gnu/libgslcblas.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libgemmi_cpp.a /usr/lib/aarch64-linux-gnu/libdw.so /usr/lib/aarch64-linux-gnu/libelf.so /usr/lib/aarch64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' [100%] Built target test-molecules-container make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' Making install in auxil make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making install in catcheck make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' Making install in rama make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' Making install in sec-str make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' Making install in strand-analysis make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' Making install in vectors make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making install in scheme make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/scheme' /usr/bin/install -c -m 644 0-auto-rot.scm coot-utils.scm get-ebi.scm mutate.scm background-demo.scm demo-script.scm gtkin.scm my-readline.scm bit.scm extra-top-level.scm hello.scm raster3d.scm brute-lsqman.scm file-utils.scm junk.scm refmac.scm coot-gui.scm filter.scm libcheck.scm simple.scm coot.scm get-ebi.save.scm local-code.scm trivial.scm gap.scm remote-control.scm povray.scm coot-lsq.scm shelx.scm group-settings.scm fitting.scm americanisms.scm tips.scm tips-gui.scm generic-objects.scm cns2coot.scm extensions.scm ncs.scm create-server.scsh coot-crash-catcher.scm '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/scheme' /usr/bin/install -c -m 644 snarf-coot-docs.scm clear-backup.scm bones-reader.scm matrices.scm fascinating-things.scm shelx-extensions.scm parse-pisa-xml.scm check-for-updates.scm 3d-generator-import.scm gui-hole.scm gui-prosmart.scm get-recent-pdbe.scm json-reader.scm jligand.scm jligand-gui.scm redefine-functions.scm user-define-restraints.scm template-key-bindings.scm gui-add-linked-cho.scm ligand-check.scm run-mogul.scm contact-score-isolated-ligand.scm enhanced-ligand.scm gui-ligand-sliders.scm dictionary-generators.scm cho-restraints-from-models.scm interactive-nudge-residues.scm acedrg-link.scm add-linked-cho.scm find-baddies.scm sharpen-blur.scm dynamic-atom-overlaps-and-other-outliers.scm '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/scheme' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' Making install in python make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' /usr/bin/install -c -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py coot_fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py coot_ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_generator_3d_import.py gui_hole.py gui_prosmart.py get_recent_pdbe.py jligand.py jligand_gui.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' /usr/bin/install -c -m 644 coot_redefine_functions.py user_define_restraints.py template_key_bindings.py gui_add_linked_cho.py coot_ligand_check.py run_mogul.py coot_contact_score_isolated_ligand.py gui_contact_score_isolated_ligand.py dictionary_generators.py cho_restraints_from_models.py interactive_nudge_residues.py pdbe_validation_data.py pathology_plots.py ligand_validation_sliders.py enhanced_ligand.py gui_ligand_sliders.py coot_sharpen_blur.py coot_acedrg_link.py coot_toolbuttons.py rcrane_loader.py add_linked_cho.py coot_find_baddies.py coot_chemical_feature_clusters.py coot_res_spec_utils.py coot_output_to_window.py populate_python_menus.py coot_hole.py refine.py what_check.py coot_testing_utils.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' Byte-compiling python modules... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py Byte-compiling python modules (optimized versions) ... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' Making install in pdb-templates make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 ASN-NAG-via-NAG-ASN.pdb pyranose-pyranose-via-BETA1-4.pdb pyranose-pyranose-via-ALPHA1-2.pdb pyranose-pyranose-via-ALPHA1-3.pdb pyranose-pyranose-via-ALPHA1-6.pdb SIA-pyranose-via-ALPHA2-3.pdb link-by-torsion-to-pyranose-core-ALPHA1-2.tab link-by-torsion-to-pyranose-core-ALPHA1-3.tab link-by-torsion-to-FUC-core-ALPHA1-3.tab link-by-torsion-to-FUC-core-ALPHA1-2.tab link-by-torsion-to-FUC-core-ALPHA1-6.tab link-by-torsion-to-NAG-core-NAG-SER.tab link-by-torsion-to-pyranose-core-ALPHA1-6.tab link-by-torsion-to-pyranose-core-ALPHA2-3.tab link-by-torsion-to-pyranose-core-BETA1-2.tab link-by-torsion-to-pyranose-core-BETA1-3.tab link-by-torsion-to-pyranose-core-BETA1-4.tab link-by-torsion-to-pyranose-core-BETA1-6.tab link-by-torsion-to-pyranose-core-NAG-ASN.tab link-by-torsion-to-pyranose-core-XYP-BMA.tab NAG-decorations.tab BMA-decorations.tab MAN-decorations.tab GLC-decorations.tab GAL-decorations.tab FUC-decorations.tab FUL-decorations.tab XYP-decorations.tab theor-helix-70.pdb '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' Making install in macros make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' Making install in compat make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-compat.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-compat.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-compat.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-compat.so.0.0.0 libcoot-compat.so.0 || { rm -f libcoot-compat.so.0 && ln -s libcoot-compat.so.0.0.0 libcoot-compat.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-compat.so.0.0.0 libcoot-compat.so || { rm -f libcoot-compat.so && ln -s libcoot-compat.so.0.0.0 libcoot-compat.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-compat.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-compat.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/compat' /usr/bin/install -c -m 644 coot-getopt.h coot-sysdep.h getopt_int.h sleep-fixups.h dirent.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/compat' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' Making install in utils make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-utils.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-utils.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-utils.so.0.0.0 libcoot-utils.so.0 || { rm -f libcoot-utils.so.0 && ln -s libcoot-utils.so.0.0.0 libcoot-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-utils.so.0.0.0 libcoot-utils.so || { rm -f libcoot-utils.so && ln -s libcoot-utils.so.0.0.0 libcoot-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-utils.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/utils' /usr/bin/install -c -m 644 coot-utils.hh coot-fasta.hh dodec.hh win-compat.hh ctpl_stl.h ctpl.h pir-alignment.hh align-utils.hh split-indices.hh radix.hh logging.hh insertion-sort.hh backward.hpp colour-holder.hh setup-syminfo.hh base64-encode-decode.hh xdg-base.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/utils' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' Making install in protein_db make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-protein-db.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-protein-db.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-protein-db.so.0.0.0 libcoot-protein-db.so.0 || { rm -f libcoot-protein-db.so.0 && ln -s libcoot-protein-db.so.0.0.0 libcoot-protein-db.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-protein-db.so.0.0.0 libcoot-protein-db.so || { rm -f libcoot-protein-db.so && ln -s libcoot-protein-db.so.0.0.0 libcoot-protein-db.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-protein-db.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/protein_db' /usr/bin/install -c -m 644 protein_db.h protein_db_utils.h rna_db.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/protein_db' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/protein_db' /usr/bin/install -c -m 644 protein.db '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/protein_db' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' Making install in mini-mol make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-mini-mol.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-mini-mol.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/mini-mol; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/aarch64-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-mini-mol.so.0 -o .libs/libcoot-mini-mol.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-mini-mol.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so.0 || { rm -f libcoot-mini-mol.so.0 && ln -s libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so || { rm -f libcoot-mini-mol.so && ln -s libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-mini-mol.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/mini-mol' /usr/bin/install -c -m 644 mini-mol.hh mini-mol-utils.hh atom-quads.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/mini-mol' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' Making install in geometry make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-geometry.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-geometry.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/geometry; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/aarch64-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/cif-parse.o .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/mol-utils.o .libs/dictionary-residue.o .libs/link.o .libs/glyco-tools.o .libs/dict-utils.o .libs/chem_mods.o .libs/srs-interface.o .libs/protein-donor-acceptors.o .libs/lbg-graph.o .libs/dreiding.o .libs/main-chain.o .libs/residue-and-atom-specs.o .libs/intercept-3GP.o .libs/mol-utils-2.o .libs/hydrophobic.o .libs/cif-parse-link.o .libs/cif-parse-mon-lib.o .libs/read-metals-json.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-mini-mol -lcoot-utils -lcoot-compat -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-geometry.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-geometry.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-geometry.so.0.0.0 libcoot-geometry.so.0 || { rm -f libcoot-geometry.so.0 && ln -s libcoot-geometry.so.0.0.0 libcoot-geometry.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-geometry.so.0.0.0 libcoot-geometry.so || { rm -f libcoot-geometry.so && ln -s libcoot-geometry.so.0.0.0 libcoot-geometry.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-geometry.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-geometry.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/geometry' /usr/bin/install -c -m 644 protein-geometry.hh read-sbase.hh lbg-graph.hh srs-interface.hh dict-utils.hh dict-mismatches.hh energy-lib.hh match-results.hh hb-types.hh main-chain.hh residue-and-atom-specs.hh chem_mods.hh mol-utils.hh mol-utils-2.hh bonded-quad.hh hydrophobic.hh metal-ligand.hh pdbe-chem-comp-atom-depiction.hh pdbx-chem-comp-description-generator.hh gphl-chem-comp-info.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/geometry' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' Making install in lidia-core make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-lidia-core.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-lidia-core.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/lidia-core; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/aarch64-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/lbg-shared.o .libs/lbg-molfile.o .libs/lig-build.o .libs/rdkit-interface.o .libs/cod-types.o .libs/atom-types.o .libs/bond-record-container-t.o .libs/cod-atom-type-t.o .libs/cod-atom-types.o .libs/bond-table-record-t.o .libs/chemical-feature-clusters.o .libs/get-residue.o .libs/svg-molecule.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-utils -lcoot-mini-mol -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lsqlite3 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-lidia-core.so.0 -o .libs/libcoot-lidia-core.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-lidia-core.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so.0 || { rm -f libcoot-lidia-core.so.0 && ln -s libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so || { rm -f libcoot-lidia-core.so && ln -s libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-lidia-core.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/lidia-core' /usr/bin/install -c -m 644 lbg-shared.hh lbg-molfile.hh lig-build.hh rdkit-interface.hh use-rdkit.hh cod-types.hh neighbour-sorter.hh bond-record-container-t.hh bond-table-record-t.hh cod-atom-types.hh cod-atom-type-t.hh primes.hh chemical-feature-clusters.hh third-neighbour-info-t.hh get-residue.hh svg-molecule.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/lidia-core' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' Making install in coot-utils make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-coord-utils.la libcoot-coord-extras.la libcoot-map-utils.la libcoot-map-heavy.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-coord-utils.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo glyco-torsions.lo coot-least-squares.lo atom-overlaps.lo reduce.lo atom-selection-container.lo contact-info.lo coot-shelx-ins.lo secondary-structure-headers.lo plane-utils.lo c-beta-deviations.lo lidia-core-functions.lo atom-tools.lo bonded-atoms.lo bricks.lo helix-like.lo merge-atom-selections.lo contacts-by-bricks.lo stack-and-pair.lo fast-eigens.lo strand-fragments.lo sfcalc-genmap.lo cablam-markup.lo coot_shiftfield.lo shiftfield.lo fib-sphere.lo polar-atoms.lo 3d-texture.lo merge-molecules.lo fragment-container.lo mutate.lo merge-C-and-N-terminii.lo cylinder.lo cylinder-with-rotation-translation.lo oct.lo prideout-octasphere.lo simple-mesh.lo shapes.lo cmtz-interface.lo pugixml.lo parse-pisa.lo gltf-export.lo pae.lo ../lidia-core/libcoot-lidia-core.la ../protein_db/libcoot-protein-db.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-utils.o .libs/coot-coord-utils-nucleotides.o .libs/coot-rama.o .libs/coot-h-bonds.o .libs/hole.o .libs/read-sm-cif.o .libs/bonded-pairs.o .libs/helix-analysis.o .libs/elastic.o .libs/glyco-torsions.o .libs/coot-least-squares.o .libs/atom-overlaps.o .libs/reduce.o .libs/atom-selection-container.o .libs/contact-info.o .libs/coot-shelx-ins.o .libs/secondary-structure-headers.o .libs/plane-utils.o .libs/c-beta-deviations.o .libs/lidia-core-functions.o .libs/atom-tools.o .libs/bonded-atoms.o .libs/bricks.o .libs/helix-like.o .libs/merge-atom-selections.o .libs/contacts-by-bricks.o .libs/stack-and-pair.o .libs/fast-eigens.o .libs/strand-fragments.o .libs/sfcalc-genmap.o .libs/cablam-markup.o .libs/coot_shiftfield.o .libs/shiftfield.o .libs/fib-sphere.o .libs/polar-atoms.o .libs/3d-texture.o .libs/merge-molecules.o .libs/fragment-container.o .libs/mutate.o .libs/merge-C-and-N-terminii.o .libs/cylinder.o .libs/cylinder-with-rotation-translation.o .libs/oct.o .libs/prideout-octasphere.o .libs/simple-mesh.o .libs/shapes.o .libs/cmtz-interface.o .libs/pugixml.o .libs/parse-pisa.o .libs/gltf-export.o .libs/pae.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-lidia-core -lcoot-protein-db -lcoot-geometry -lcoot-utils -lcoot-mini-mol -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-utils.so.0 -o .libs/libcoot-coord-utils.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so.0 || { rm -f libcoot-coord-utils.so.0 && ln -s libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so || { rm -f libcoot-coord-utils.so && ln -s libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-utils.la libtool: warning: relinking 'libcoot-coord-extras.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-extras.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo jed-flip.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-extras.o .libs/coot-coord-lsq.o .libs/coot-tree-extras.o .libs/water-coordination.o .libs/lsq-improve.o .libs/coot-coord-utils-glyco.o .libs/jed-flip.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-extras.so.0 -o .libs/libcoot-coord-extras.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-extras.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so.0 || { rm -f libcoot-coord-extras.so.0 && ln -s libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so || { rm -f libcoot-coord-extras.so && ln -s libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-extras.la libtool: warning: relinking 'libcoot-map-utils.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-map-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo pepflip-using-difference-map.lo exp-fit.lo blob-line.lo slurp-map.lo find-water-baddies.lo diff-diff-map-peaks.lo mini-texture.lo positron.lo texture-as-floats.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -lz -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-utils.o .libs/peak-search.o .libs/peak-search-from-list.o .libs/trim.o .libs/xmap-stats.o .libs/maps-spherical.o .libs/pepflip-using-difference-map.o .libs/exp-fit.o .libs/blob-line.o .libs/slurp-map.o .libs/find-water-baddies.o .libs/diff-diff-map-peaks.o .libs/mini-texture.o .libs/positron.o .libs/texture-as-floats.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -lz -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-utils.so.0 -o .libs/libcoot-map-utils.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-utils.so.0.0.0 libcoot-map-utils.so.0 || { rm -f libcoot-map-utils.so.0 && ln -s libcoot-map-utils.so.0.0.0 libcoot-map-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-utils.so.0.0.0 libcoot-map-utils.so || { rm -f libcoot-map-utils.so && ln -s libcoot-map-utils.so.0.0.0 libcoot-map-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-utils.la libtool: warning: relinking 'libcoot-map-heavy.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-map-heavy.la -rpath /usr/lib/aarch64-linux-gnu coot-map-heavy.lo coot-fffear.lo spherical-harmonics.lo segmap.lo libcoot-map-utils.la libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-heavy.o .libs/coot-fffear.o .libs/spherical-harmonics.o .libs/segmap.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-utils -lcoot-coord-utils -lcoot-lidia-core -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-heavy.so.0 -o .libs/libcoot-map-heavy.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-heavy.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so.0 || { rm -f libcoot-map-heavy.so.0 && ln -s libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so || { rm -f libcoot-map-heavy.so && ln -s libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-heavy.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c coot-mmrrcc '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' libtool: warning: './libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: './libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-mmrrcc /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin/coot-mmrrcc /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coot-utils' /usr/bin/install -c -m 644 peak-search.hh coot-trim.hh coot-coord-utils.hh coot-map-utils.hh coot-coord-extras.hh coot-map-heavy.hh coot-lsq-types.h coot-shelx.hh coot-rama.hh xmap-stats.hh coot-h-bonds.hh lsq-improve.hh coot-hole.hh read-sm-cif.hh bonded-pairs.hh tree.hh helix-analysis.hh elastic.hh emma.hh glyco-torsions.hh coot-least-squares.hh coot-density-stats.hh atom-overlaps.hh reduce.hh atom-selection-container.hh contact-info.hh plane-utils.hh secondary-structure-headers.hh c-beta-deviations.hh jed-flip.hh lidia-core-functions.hh bonded-atoms.hh spherical-harmonics.hh helix-like.hh merge-atom-selections.hh contacts-by-bricks.hh amp-reso.hh stack-and-pair.hh atom-tools.hh segmap.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coot-utils' /usr/bin/install -c -m 644 fast-eigens.hh strand-fragments.hh sfcalc-genmap.hh cablam-markup.hh slurp-map.hh merge-molecules.hh arc-info.hh exp-fit.hh coot_shiftfield.h shiftfield.h fib-sphere.hh cis-peptide-info.hh pepflip-using-difference-map.hh blob-line.hh shape-types.hh shapes.hh polar-atoms.hh 3d-texture.hh fragment-container.hh map-index.hh atom-tree.hh jed-flip.hh atom-vertex.hh merge-C-and-N-terminii.hh simple-mesh.hh vertex.hh g_triangle.hh cylinder.hh cylinder-with-rotation-translation.hh oct.hh prideout-octasphere.hh cmtz-interface.hh mtz-column-auto-read.hh pugixml.hpp pugiconfig.hpp find-water-baddies.hh voidp-buffer.hh parse-pisa.hh diff-diff-map-peaks.hh tiny_gltf.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coot-utils' /usr/bin/install -c -m 644 json.hpp stb_image.h stb_image_write.h glyco-tree.hh positron.hh mini-texture.hh texture-as-floats.hh pae.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coot-utils' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' Making install in angles make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-AngleInfo.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-AngleInfo.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so.0 || { rm -f libcoot-AngleInfo.so.0 && ln -s libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so || { rm -f libcoot-AngleInfo.so && ln -s libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-AngleInfo.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/angles' /usr/bin/install -c -m 644 AngleInfo.h ncube.h wrapped-ncube.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/angles' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' Making install in ccp4mg-utils make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libccp4mg-utils.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4mg-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4mg-utils.so.0.0.0 libccp4mg-utils.so.0 || { rm -f libccp4mg-utils.so.0 && ln -s libccp4mg-utils.so.0.0.0 libccp4mg-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4mg-utils.so.0.0.0 libccp4mg-utils.so || { rm -f libccp4mg-utils.so && ln -s libccp4mg-utils.so.0.0.0 libccp4mg-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4mg-utils.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ccp4mg-utils' /usr/bin/install -c -m 644 geomutil.h mgtree.h cartesian.h matrix.h quat.h ppmutil.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ccp4mg-utils' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' Making install in db-main make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-db-main.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-db-main.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/db-main; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-db-main.la -rpath /usr/lib/aarch64-linux-gnu db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/db-main.o .libs/db-strands.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-mini-mol -lcoot-lidia-core -lcoot-coord-utils -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-db-main.so.0 -o .libs/libcoot-db-main.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-db-main.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-db-main.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-db-main.so.0.0.0 libcoot-db-main.so.0 || { rm -f libcoot-db-main.so.0 && ln -s libcoot-db-main.so.0.0.0 libcoot-db-main.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-db-main.so.0.0.0 libcoot-db-main.so || { rm -f libcoot-db-main.so && ln -s libcoot-db-main.so.0.0.0 libcoot-db-main.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-db-main.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-db-main.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/db-main' /usr/bin/install -c -m 644 db-main.hh db-strands.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/db-main' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' Making install in analysis make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-analysis.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-analysis.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/analysis; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-analysis.la -rpath /usr/lib/aarch64-linux-gnu bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo b-factor-histogram.lo daca.lo rna-backbone.lo ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/bfkurt.o .libs/mogul.o .libs/kolmogorov.o .libs/stats.o .libs/cablam.o .libs/typed-distances.o .libs/b-factor-histogram.o .libs/daca.o .libs/rna-backbone.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-utils -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-analysis.so.0 -o .libs/libcoot-analysis.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-analysis.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-analysis.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-analysis.so.0.0.0 libcoot-analysis.so.0 || { rm -f libcoot-analysis.so.0 && ln -s libcoot-analysis.so.0.0.0 libcoot-analysis.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-analysis.so.0.0.0 libcoot-analysis.so || { rm -f libcoot-analysis.so && ln -s libcoot-analysis.so.0.0.0 libcoot-analysis.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-analysis.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-analysis.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c coot-bfactan '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' libtool: warning: 'libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-bfactan /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin/coot-bfactan /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/analysis' /usr/bin/install -c -m 644 bfkurt.hh mogul-interface.hh stats.hh daca.hh rna-backbone.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/analysis' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' Making install in cootaneer make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcootaneer.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcootaneer.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootaneer.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootaneer.so.0.0.0 libcootaneer.so.0 || { rm -f libcootaneer.so.0 && ln -s libcootaneer.so.0.0.0 libcootaneer.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootaneer.so.0.0.0 libcootaneer.so || { rm -f libcootaneer.so && ln -s libcootaneer.so.0.0.0 libcootaneer.so; }; }) libtool: install: /usr/bin/install -c .libs/libcootaneer.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootaneer.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 cootaneer-llk-2.40.dat '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' Making install in ideal make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-ideal.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-ideal.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ideal; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-ideal.la -rpath /usr/lib/aarch64-linux-gnu simple-restraint.lo make-restraints.lo ng.lo chi-squareds.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo process-dfs-in-range.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo pull-restraint.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo neutron.lo ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpng16 -lm -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/simple-restraint.o .libs/make-restraints.o .libs/ng.o .libs/chi-squareds.o .libs/mods.o .libs/distortion.o .libs/chirals.o .libs/flanking.o .libs/gradients.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/process-dfs-in-range.o .libs/extra-restraints-kk.o .libs/simple-restraint-kk.o .libs/torsion-bonds.o .libs/coot-compare-residues.o .libs/link-restraints.o .libs/parallel-planes.o .libs/pull-restraint.o .libs/trans-peptide.o .libs/model-bond-deltas.o .libs/write-png.o .libs/zo-rama.o .libs/crankshaft.o .libs/phi-psi.o .libs/neutron.o -lpthread -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-heavy -lcoot-map-utils -lcoot-geometry -lcoot-coord-extras -lcoot-coord-utils -lcoot-mini-mol -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-ideal.so.0 -o .libs/libcoot-ideal.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-ideal.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ideal.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ideal.so.0.0.0 libcoot-ideal.so.0 || { rm -f libcoot-ideal.so.0 && ln -s libcoot-ideal.so.0.0.0 libcoot-ideal.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ideal.so.0.0.0 libcoot-ideal.so || { rm -f libcoot-ideal.so && ln -s libcoot-ideal.so.0.0.0 libcoot-ideal.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-ideal.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ideal.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c coot-mini-rsr coot-ligand-validation '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' /bin/sh ../libtool --mode=install /usr/bin/install -c mini-rsr-bin coot-ligand-validation-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' libtool: warning: './libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mini-rsr-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/mini-rsr-bin libtool: warning: './libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-ligand-validation-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-ligand-validation-bin /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ideal' /usr/bin/install -c -m 644 test-indexing.hh simple-restraint.hh pepflip.hh regularize-minimol.hh lograma.h zo-rama.hh phi-psi.hh parallel-planes.hh torsion-bonds.hh extra-restraints.hh model-bond-deltas.hh refinement-lights.hh refinement-results-t.hh rama-types.hh new-linked-residue-t.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ideal' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' Making install in ligand make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-ligand.la libcoot-res-tracer.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-ligand.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ligand; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-ligand.la -rpath /usr/lib/aarch64-linux-gnu ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo joining-residues.lo ligand-score-card.lo side-chain-densities.lo tube-finder.lo smith-waterman.lo side-chain.lo refine-isolated-chain.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/trace.o .libs/trace-2.o .libs/multi-peptide.o .libs/ligands-db.o .libs/joining-residues.o .libs/ligand-score-card.o .libs/side-chain-densities.o .libs/tube-finder.o .libs/smith-waterman.o .libs/side-chain.o .libs/refine-isolated-chain.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ideal -lcoot-map-heavy -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-analysis -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-ligand.so.0 -o .libs/libcoot-ligand.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-ligand.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ligand.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ligand.so.0.0.0 libcoot-ligand.so.0 || { rm -f libcoot-ligand.so.0 && ln -s libcoot-ligand.so.0.0.0 libcoot-ligand.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ligand.so.0.0.0 libcoot-ligand.so || { rm -f libcoot-ligand.so && ln -s libcoot-ligand.so.0.0.0 libcoot-ligand.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-ligand.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ligand.la libtool: warning: relinking 'libcoot-res-tracer.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ligand; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-res-tracer.la -rpath /usr/lib/aarch64-linux-gnu libres-tracer.lo rama-rsr-extend-fragments.lo new-residue-by-3-phi-psi.lo dSFMT.lo libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libres-tracer.o .libs/rama-rsr-extend-fragments.o .libs/new-residue-by-3-phi-psi.o .libs/dSFMT.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ligand -lcoot-ideal -lcoot-map-utils -lcoot-coord-utils -lcoot-mini-mol -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-res-tracer.so.0 -o .libs/libcoot-res-tracer.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-res-tracer.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-res-tracer.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so.0 || { rm -f libcoot-res-tracer.so.0 && ln -s libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so || { rm -f libcoot-res-tracer.so && ln -s libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-res-tracer.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-res-tracer.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c coot-findwaters coot-findligand coot-identify-protein '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' /bin/sh ../libtool --mode=install /usr/bin/install -c coot-findligand-bin coot-findwaters-bin coot-make-ligands-db coot-identify-protein-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-findligand-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-findligand-bin libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-findwaters-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-findwaters-bin libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-make-ligands-db /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-make-ligands-db libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-identify-protein-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-identify-protein-bin /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' /usr/bin/install -c -m 644 ligands-2016.db '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' /usr/bin/mkdir -p /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/assign-side-chains && ${TAR-tar} -x -C /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/assign-side-chains -f ../ligand/side-chain-data.tar.gz /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/assign-side-chains' /usr/bin/install -c -m 644 useable-grid-points-nstep=5,box_radius=5.0-charybdis.data '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/assign-side-chains' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ligand' /usr/bin/install -c -m 644 ligand.hh residue_by_phi_psi.hh wligand.hh monomer-utils.hh chi-angles.hh dunbrack.hh helix-placement.hh fast-ss-search.hh rigid-body.hh ideal-rna.hh rotamer.hh richardson-rotamer.hh torsion-general.hh primitive-chi-angles.hh dipole.hh base-pairing.hh backrub-rotamer.hh trace.hh multi-peptide.hh ligands-db.hh scored-coord.hh ligand-score-card.hh scored-molecule.hh map-point-cluster.hh side-chain-densities.hh tube-finder.hh smith-waterman.hh side-chain.hh new-residue-by-3-phi-psi.hh refine-isolated-chain.hh libres-tracer.hh dSFMT.h dSFMT-params.h dSFMT-params19937.h dSFMT-common.h scored-node.hh rama-rsr-extend-fragments.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/ligand' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' Making install in coords make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-coords.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-coords.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coords; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coords.la -rpath /usr/lib/aarch64-linux-gnu Bond_lines.lo Cartesian.lo cos-sin.lo phenix-geo-bonds.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo rotamer-markup.lo loop-path.lo rama-plot-phi-psi.lo phi-psi-prob.lo ramachandran-validation.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../cootaneer/libcootaneer.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/phenix-geo-bonds.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/phenix-geo.o .libs/rotamer-markup.o .libs/loop-path.o .libs/rama-plot-phi-psi.o .libs/phi-psi-prob.o .libs/ramachandran-validation.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ligand -lcoot-coord-utils -lcoot-coord-extras -lcoot-geometry -lcoot-mini-mol -lcootaneer -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-coords.so.0 -o .libs/libcoot-coords.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coords.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coords.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coords.so.0.0.0 libcoot-coords.so.0 || { rm -f libcoot-coords.so.0 && ln -s libcoot-coords.so.0.0.0 libcoot-coords.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coords.so.0.0.0 libcoot-coords.so || { rm -f libcoot-coords.so && ln -s libcoot-coords.so.0.0.0 libcoot-coords.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coords.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coords.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coords' /usr/bin/install -c -m 644 Bond_lines.h Cartesian.h cos-sin.h mmdb.hh mmdb-extras.h utils.h mmdb-crystal.h Bond_lines_ext.h coot-close.hh phenix-geo.hh ramachandran-container.hh loop-path.hh rotamer-container.hh graphical-bonds-container.hh graphics-line.hh torus-description.hh rama-plot-phi-psi.hh phi-psi-prob.hh ramachandran-validation.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/coords' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' Making install in density-contour make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-isosurface.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-isosurface.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/density-contour; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-isosurface.la -rpath /usr/lib/aarch64-linux-gnu Vectors.lo CIsoSurface.lo density-contour-triangles.lo occlusion.lo gaussian-surface.lo ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o .libs/occlusion.o .libs/gaussian-surface.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coords -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-isosurface.so.0 -o .libs/libcoot-isosurface.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-isosurface.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-isosurface.so.0.0.0 libcoot-isosurface.so.0 || { rm -f libcoot-isosurface.so.0 && ln -s libcoot-isosurface.so.0.0.0 libcoot-isosurface.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-isosurface.so.0.0.0 libcoot-isosurface.so || { rm -f libcoot-isosurface.so && ln -s libcoot-isosurface.so.0.0.0 libcoot-isosurface.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-isosurface.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/density-contour' /usr/bin/install -c -m 644 Vectors.h CIsoSurface.h density-contour-triangles.hh occlusion.hh transfer-occlusions.hh gaussian-surface.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/density-contour' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' Making install in skeleton make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-skeleton.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-skeleton.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/skeleton; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-skeleton.la -rpath /usr/lib/aarch64-linux-gnu dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-AngleInfo -lcoot-ideal -lcoot-geometry -lcoot-coords -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-skeleton.so.0 -o .libs/libcoot-skeleton.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-skeleton.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-skeleton.so.0.0.0 libcoot-skeleton.so.0 || { rm -f libcoot-skeleton.so.0 && ln -s libcoot-skeleton.so.0.0.0 libcoot-skeleton.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-skeleton.so.0.0.0 libcoot-skeleton.so || { rm -f libcoot-skeleton.so && ln -s libcoot-skeleton.so.0.0.0 libcoot-skeleton.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-skeleton.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/skeleton' /usr/bin/install -c -m 644 graphical_skel.h dm-utils.h BuildCas.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/skeleton' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' Making install in high-res make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-high-res.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-high-res.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/high-res; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-high-res.la -rpath /usr/lib/aarch64-linux-gnu high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-coords -lcoot-ligand -lcoot-map-utils -lcoot-lidia-core -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-high-res.so.0 -o .libs/libcoot-high-res.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-high-res.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-high-res.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-high-res.so.0.0.0 libcoot-high-res.so.0 || { rm -f libcoot-high-res.so.0 && ln -s libcoot-high-res.so.0.0.0 libcoot-high-res.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-high-res.so.0.0.0 libcoot-high-res.so || { rm -f libcoot-high-res.so && ln -s libcoot-high-res.so.0.0.0 libcoot-high-res.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-high-res.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-high-res.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/high-res' /usr/bin/install -c -m 644 high-res.hh coot-atom-graph.hh coot-node-info.hh sequence-assignment.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/high-res' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' Making install in build make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/build' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/build' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-cabuild.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-cabuild.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/build; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-cabuild.la -rpath /usr/lib/aarch64-linux-gnu CalphaBuild.lo ../angles/libcoot-AngleInfo.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/CalphaBuild.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-AngleInfo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-cabuild.so.0 -o .libs/libcoot-cabuild.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-cabuild.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-cabuild.so.0.0.0 libcoot-cabuild.so.0 || { rm -f libcoot-cabuild.so.0 && ln -s libcoot-cabuild.so.0.0.0 libcoot-cabuild.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-cabuild.so.0.0.0 libcoot-cabuild.so || { rm -f libcoot-cabuild.so && ln -s libcoot-cabuild.so.0.0.0 libcoot-cabuild.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-cabuild.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/build' /usr/bin/install -c -m 644 CalphaBuild.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/build' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/build' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/build' Making install in MoleculesToTriangles make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making install in CXXSurface make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../../libtool --mode=install /usr/bin/install -c libMoleculesToTrianglesCXXSurface.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXSurface.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXSurface.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so.0 || { rm -f libMoleculesToTrianglesCXXSurface.so.0 && ln -s libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so || { rm -f libMoleculesToTrianglesCXXSurface.so && ln -s libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so; }; }) libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXSurface.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXSurface.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 ctpl_boost.h CXXCoord.h CXXNewHood.h CXXSphereNode.h CXXTorusElement.h surface.h CXXAlloc.h CXXCreator.h CXXPointyBit.h CXXSphereTriangleEdge.h CXXTorusNode.h TokenIterator.h CXXBall.h CXXException.h CXXQADSurface.h CXXSphereTriangle.h CXXTorusTriangle.h.h CXXChargeTable.h CXXFFTSolventMap.h CXXSpace.h CXXSurface.h CXXTriangle.h CXXCircle.h CXXFortranFile.h CXXSphereElement.h CXXSurfaceMaker.h CXXUtils.h CXXCircleNode.h CXXMatrix4x4.h CXXSphereFlatTriangle.h CXXSurfaceVertex.h CXXVCN.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' Making install in CXXClasses make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../../libtool --mode=install /usr/bin/install -c libMoleculesToTrianglesCXXClasses.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libMoleculesToTrianglesCXXClasses.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libMoleculesToTrianglesCXXClasses.la -rpath /usr/lib/aarch64-linux-gnu libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-Representation.lo libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo libMoleculesToTrianglesCXXClasses_la-Light.lo libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo libMoleculesToTrianglesCXXClasses_la-ColorRule.lo libMoleculesToTrianglesCXXClasses_la-NRStuff.lo libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo libMoleculesToTrianglesCXXClasses_la-Renderer.lo libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-Quaternion.lo libMoleculesToTrianglesCXXClasses_la-Vector2.lo libMoleculesToTrianglesCXXClasses_la-Vector3.lo libMoleculesToTrianglesCXXClasses_la-lfit.lo libMoleculesToTrianglesCXXClasses_la-DishyBase.lo libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo ../../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o .libs/libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -lMoleculesToTrianglesCXXSurface -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXClasses.so.0 -o .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so.0 || { rm -f libMoleculesToTrianglesCXXClasses.so.0 && ln -s libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so || { rm -f libMoleculesToTrianglesCXXClasses.so && ln -s libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so; }; }) libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXClasses.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXClasses.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 Quaternion.hpp Vector.hpp Vector2.hpp Vector3.hpp AtomPropertyRampColorRule.h DirectedPositionedEntity.h BallsPrimitive.h DiscreteSegment.h Representation.h BondsPrimitive.h DisplayPrimitive.h RepresentationInstance.h BoxSectionPrimitive.h GLIndexType.h RotatedTranslatedScaledEntity.h CXXMatrix.h Light.h SceneSetup.h Callbacks.h LinesPrimitive.h SecondaryColorScheme.h Camera.h MolecularRepresentation.h SolidColorRule.h MolecularRepresentationInstance.h SpherePrimitive.h ColorNamesMap.h MyMolecule.h SticksPrimitive.h ColorRule.h NRStuff.h SurfacePrimitive.h ColorScheme.h Polyhedron.h VertexColorNormalPrimitive.h CompoundSelection.h PositionedEntity.h lfit.h CylinderPoint.h Renderer.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 oglPolyhedron.h CylindersPrimitive.h RendererGL.h RendererGLSL.hpp DishyBase.h FlatFanPrimitive.h '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 MoleculesToTrianglesCXXClasses.pc '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making install in pli make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-pli.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-pli.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pli; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-pli.la -rpath /usr/lib/aarch64-linux-gnu protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo sdf-interface.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/protein-ligand-interactions.o .libs/flev-annotations.o .libs/pi-stacking.o .libs/sdf-interface.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-geometry -lcoot-lidia-core -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-pli.so.0 -o .libs/libcoot-pli.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-pli.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-pli.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-pli.so.0.0.0 libcoot-pli.so.0 || { rm -f libcoot-pli.so.0 && ln -s libcoot-pli.so.0.0.0 libcoot-pli.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-pli.so.0.0.0 libcoot-pli.so || { rm -f libcoot-pli.so && ln -s libcoot-pli.so.0.0.0 libcoot-pli.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-pli.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-pli.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/pli' /usr/bin/install -c -m 644 flev-annotations.hh protein-ligand-interactions.hh pi-stacking.hh specs.hh sdf-interface.hh sdf-internal.hh sdf-interface-for-export.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/pli' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' Making install in greg-tests make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/greg-tests' Making install in python-tests make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' Making install in cootilus make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcootilus.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcootilus.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootilus.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootilus.so.0.0.0 libcootilus.so.0 || { rm -f libcootilus.so.0 && ln -s libcootilus.so.0.0.0 libcootilus.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootilus.so.0.0.0 libcootilus.so || { rm -f libcootilus.so && ln -s libcootilus.so.0.0.0 libcootilus.so; }; }) libtool: install: /usr/bin/install -c .libs/libcootilus.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootilus.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 nautilus_lib.pdb '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' Making install in pyrogen make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c pyrogen '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot_py_restraints.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot_py_restraints.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot_py_restraints.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0 || { rm -f libcoot_py_restraints.so.0 && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so || { rm -f libcoot_py_restraints.so && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot_py_restraints.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /bin/sh ../libtool --mode=install /usr/bin/install -c _pyrogen_swig.la pyrogen_boost.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_pyrogen_swig.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/pyrogen-swig.o .libs/restraints.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-ideal -lcoot-coord-utils -lcoot-lidia-core -lcoot-analysis -lcoot-geometry -lcoot-utils -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,_pyrogen_swig.so.0 -o .libs/_pyrogen_swig.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_pyrogen_swig.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0 || { rm -f _pyrogen_swig.so.0 && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so || { rm -f _pyrogen_swig.so && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so; }; }) libtool: install: /usr/bin/install -c .libs/_pyrogen_swig.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.la libtool: warning: relinking 'pyrogen_boost.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/restraints-boost.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-pli -lcoot-ideal -lcoot-coord-utils -lcoot-geometry -lcoot-coords -lcoot-lidia-core -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,pyrogen_boost.so.0 -o .libs/pyrogen_boost.so.0.0.0 libtool: install: /usr/bin/install -c .libs/pyrogen_boost.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so.0 || { rm -f pyrogen_boost.so.0 && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so || { rm -f pyrogen_boost.so && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so; }; }) libtool: install: /usr/bin/install -c .libs/pyrogen_boost.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.la libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' make install-exec-hook make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[5]: Nothing to be done for 'install-exec-hook'. make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' /usr/bin/install -c -m 644 pyrogen.py atom_types.py jay_util.py tautomer.py pyrogen_swig.py coot_git.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' Byte-compiling python modules... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py Byte-compiling python modules (optimized versions) ... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' Making install in data make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' Making install in rama-coeffs make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/rama/zo-tables' /usr/bin/install -c -m 644 all-non-pre-pro.tab coeffsolution.dat '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/rama/zo-tables' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' Making install in cho-models make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-models' /usr/bin/install -c -m 644 model-level-1-NAG-NAG-ASN-ASN.tab model-level-4-BMA-BETA1-6-BMA.tab model-level-5-MAN-ALPHA1-3-BMA.tab model-level-2-FUC-BETA1-3-NAG.tab model-level-4-BMA-BETA1-6-MAN.tab model-level-5-MAN-ALPHA1-3-MAN.tab model-level-2-FUC-BETA1-6-NAG.tab model-level-4-MAN-ALPHA1-3-BMA.tab model-level-5-MAN-ALPHA1-6-BMA.tab model-level-2-FUL-ALPHA1-3-NAG.tab model-level-4-MAN-ALPHA1-4-BMA.tab model-level-5-MAN-ALPHA1-6-MAN.tab model-level-2-FUL-ALPHA1-6-NAG.tab model-level-4-MAN-ALPHA1-6-BMA.tab model-level-5-NAG-BETA1-2-MAN.tab model-level-2-NAG-BETA1-4-NAG.tab model-level-4-MAN-ALPHA1-6-MAN.tab model-level-6-GAL-BETA1-4-NAG.tab model-level-3-BMA-BETA1-3-NAG.tab model-level-4-NAG-BETA1-4-BMA.tab model-level-6-MAN-ALPHA1-2-MAN.tab model-level-3-BMA-BETA1-4-NAG.tab model-level-5-BMA-BETA1-2-BMA.tab model-level-7-GLC-ALPHA1-3-MAN.tab model-level-3-MAN-ALPHA1-4-NAG.tab model-level-5-BMA-BETA1-6-MAN.tab model-level-4-BMA-BETA1-3-BMA.tab model-level-5-MAN-ALPHA1-2-MAN.tab '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-models' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' Making install in cho-acedrg make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-acedrg' /usr/bin/install -c -m 644 BMA-acedrg.cif FUC-acedrg.cif MAN-acedrg.cif NAG-acedrg.cif SIA-acedrg.cif XYP-acedrg.cif '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-acedrg' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' Making install in metal make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal' /usr/bin/install -c -m 644 metal-O-distance.table metal-S-distance.table metal-N-distance.table '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' /usr/bin/install -c -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz ligands.db syminfo.lib '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' Making install in man make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/man' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/man' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'coot.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot.1' /usr/bin/install -c -m 644 'coot-density-score-by-residue.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-density-score-by-residue.1' /usr/bin/install -c -m 644 'coot-compare-dictionaries.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-compare-dictionaries.1' /usr/bin/install -c -m 644 'coot-available-comp-id.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-available-comp-id.1' /usr/bin/install -c -m 644 'coot-bfactan.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-bfactan.1' /usr/bin/install -c -m 644 'coot-fix-nomenclature-errors.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-fix-nomenclature-errors.1' /usr/bin/install -c -m 644 'coot-make-shelx-restraints.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-make-shelx-restraints.1' /usr/bin/install -c -m 644 'coot-mini-rsr.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-mini-rsr.1' /usr/bin/install -c -m 644 'lidia.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/lidia.1' /usr/bin/install -c -m 644 'findwaters.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/findwaters.1' /usr/bin/install -c -m 644 'findligand.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/findligand.1' /usr/bin/install -c -m 644 'layla.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/layla.1' /usr/bin/install -c -m 644 'pyrogen.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/pyrogen.1' /usr/bin/install -c -m 644 'coot-identify-protein.man' '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/man/man1/coot-identify-protein.1' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/man' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/man' Making install in rama-data make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data' /usr/bin/install -c -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' Making install in doc make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/doc' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/doc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/doc' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/doc' Making install in glTF make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/glTF' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/glTF' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/glTF' /usr/bin/install -c -m 644 grey-eyelashes-many-lashes.glb '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/glTF' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/glTF' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/glTF' Making install in pixmaps make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' Making install in icons make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps/icons' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps/icons' make[5]: Nothing to be done for 'install-exec-am'. for icon in hicolor_apps_48x48_coot.png hicolor_apps_64x64_coot.png hicolor_apps_96x96_coot.png hicolor_apps_256x256_coot.png hicolor_apps_scalable_coot.svg hicolor_apps_scalable_coot-layla.svg hicolor_actions_scalable_Stock-dialog-warning.svg hicolor_actions_scalable_Stock-dialog-information.svg; do \ THEME=` echo $icon | cut -d_ -f1`; \ CONTEXT=` echo $icon | cut -d_ -f2`; \ SIZE=` echo $icon | cut -d_ -f3`; \ ICONFILE=`echo $icon | cut -d_ -f4`; \ mkdir -p /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/icons/$THEME/$SIZE/$CONTEXT; \ /usr/bin/install -c -m 644 ./$icon /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/icons/$THEME/$SIZE/$CONTEXT/$ICONFILE; \ done; make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps/icons' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps/icons' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 add-alt-conf.png dna.svg probe-clash.svg add-alt-conf.svg edit-backbone.svg radacina_handcuffs-small.svg add-peptide-1.png edit-chi.png ramachandran.png add-peptide-1.svg edit-chi.svg refine-1.svg add-water.svg emsley.jpg refine.png anchor.svg env-distances.png regularize-1.svg aniso-atom.png env-distances.svg regularize.png aniso-atom.svg eugene.jpg renumber-residues.svg appointment-new.png flip-peptide.png reset-view-32.png atom-at-pointer.png flip-peptide.svg reset-view-32.svg atom-at-pointer.svg generic-display-objects.svg reset-view.png auto-fit-rotamer.png geom.svg reset-view.svg auto-fit-rotamer.svg ghosts.png residue-info.png azerbaijan2.svg '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 ghosts.svg residue-info.svg azerbaijan.svg gln-asn-b-factors.svg rigid-body.png calculate-ghosts.svg gln-asn-b-factorssvg.svg rigid-body.svg cell+symm.png glyco-structures.svg rotamers.png cell+symm.svg gnome-run.png rotamers.svg change-chain-id.svg go-to-atom.svg rtz.png rrz.png chiral.png go-to-ligand.svg rtz.svg rrz.svg chiral.svg gtk-connect-16.png scroll-wheel.svg connect-to-ccp4.svg gtk-font.png secondary-structure.svg connect-to-oca.svg gtk-open-16.png sequence-view.png connect-to-usf.svg gtk-open-24.png sequence-view.svg connect-to-world.svg gtk-open.png side-chain-180.png kevin.jpg side-chain-180.svg kevin-orig.jpg '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 smiles.png kleywegt.svg smiles.svg map.svg spin-view.png coot-favicon.png merge-molecules.svg spin-view.svg coot-icon.png mutate-auto-fit.svg stereo-view.svg coot-save.png mutate.svg stop.svg coot-save-symm.png panel-screenshot.png temperature.png crosshairs.png peptide-omega.png temperature.svg crosshairs.svg peptide-omega.svg torsion-general.svg delete.png phenixed.svg undo-1.png delete.svg pink-pointer.png undo-1.svg density-fit.svg pink-pointer.svg unknown-blob.png diff-map.png plane-distances.png unknown-blob.svg diff-map.svg plane-distances.svg water-diff-map.svg display-manager.png pointer-distances.png '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 water-drop.svg display-manager.svg pointer-distances.svg edit-undo.png edit-redo.png edit-delete.png python-logo.svg koppi-green-tick-64.png rygle-red-cross-64.png forest51690-dwcheckno-incomplete-64.png go-to-ligand.png go-to-atom.png azerbaijan.png add-water.png mutate.png mutate-auto-fit.png edit-backbone.png torsion-general.png anchor.png regularize-1.png refine-1.png stock-zoom-follow-window-12.svg stock-zoom-follow-window-12.png rama_all.png rama_gly.png rama_pro.png rama_non_gly_pro.png curlew-long.png curlew-128-filled.svg refmac.svg broom.png broom.svg jed-flip-reverse.svg layla_3c.svg layla_4c.svg layla_5c.svg layla_6arom.svg layla_6c.svg layla_7c.svg layla_8c.svg '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/install -c -m 644 layla_charge_tool.svg layla_delete_hydrogens_tool.svg layla_double_bond.svg layla_format_tool.svg layla_geometry_tool-dark.svg layla_geometry_tool.svg layla_key.svg layla_move_tool.svg layla_single_bond.svg layla_triple_bond.svg rama2_all.png rama2_gly.png rama2_pro.png rama2_non_gly_pro.png rama2_ileval.png rama2_pre_pro.png rama2_non_gly_pro_pre_pro_ileval.png '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pixmaps' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/images' /usr/bin/install -c -m 644 coot-1.png '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/images' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pixmaps' Making install in textures make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/textures' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/textures' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/textures' /usr/bin/install -c -m 644 hud-label-nbc-rama.png hud-tooltip.png happy-face-marker.png sad-face-marker.png rama-plot-pro-normal.png rama-plot-pro-outlier.png rama-plot-gly-normal.png rama-plot-gly-outlier.png rama-plot-other-normal.png rama-plot-other-outlier.png rama-standard-inverted.png hud-label-NBC-small.png hud-label-pull-small.png hud-label-chiral-small.png hud-label-rama-small.png hud-label-rota-small.png anchor-for-fixed-atoms.png refinement-dialog-arrrow-highlighted.png refinement-dialog-arrrow.png angry-diego.svg angry-diego.png chiral-volume-outlier-marker.png '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/textures' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/textures' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/textures' Making install in sounds make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/sounds' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/sounds' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/sounds' /usr/bin/install -c -m 644 sounds.readme 325112_3246658-lq-fisch12345-success.ogg 538546_3725923-lq-Sjonas_Rising.ogg 538548_3725923-lq-Sjonas-Select-3.ogg 538549_3725923-lq-Sjonas-Select-2.ogg 538550_3725923-lq-Sjonas88-Deep-tone.ogg 538551_3725923-lq-Sjonas88-3-select.ogg 538553_3725923-lq-Sjonas88-Stars.ogg 538554_3725923-lq-Sjonas88-success.ogg cdonahueucsd-337132_5955158-lq.ogg pop-dodrio-554022_1433422-lq.ogg '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/sounds' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/sounds' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/sounds' Making install in api make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/api' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/api' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-api.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-api.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/api; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../ligand/libcoot-ligand.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../analysis/libcoot-analysis.la ../density-contour/libcoot-isosurface.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -Wl,-z,relro -o libcoot-api.la -rpath /usr/lib/aarch64-linux-gnu coot-molecule.lo coot-colour.lo add-terminal-residue.lo rama-plot-phi-psi.lo colour-functions.lo coot-molecule-maps.lo coot-molecule-merge-molecules.lo coot-molecule-bonds.lo coot-molecule-validation.lo molecules-container-modelling.lo molecules-container.lo make-a-dodec.lo molecules-container-ligand-fitting.lo phi-psi-prob.lo coot-molecule-moltris.lo coot-molecule-replace-fragment.lo coot-molecule-backup.lo coot-molecule-bonds-instanced.lo molecules-container-mmrrcc.lo molecules-container-gltf.lo coot-molecule-refine.lo molecules-container-superpose.lo rigid-body-fit.lo moorhen-h-bonds.lo molecules-container-bucca-ml-growing.lo instancing.lo molecules-container-maps.lo coot-molecule-change-chain-id.lo blender-mesh.lo coot-molecule-blender.lo molecules-container-blender.lo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-molecule.o .libs/coot-colour.o .libs/add-terminal-residue.o .libs/rama-plot-phi-psi.o .libs/colour-functions.o .libs/coot-molecule-maps.o .libs/coot-molecule-merge-molecules.o .libs/coot-molecule-bonds.o .libs/coot-molecule-validation.o .libs/molecules-container-modelling.o .libs/molecules-container.o .libs/make-a-dodec.o .libs/molecules-container-ligand-fitting.o .libs/phi-psi-prob.o .libs/coot-molecule-moltris.o .libs/coot-molecule-replace-fragment.o .libs/coot-molecule-backup.o .libs/coot-molecule-bonds-instanced.o .libs/molecules-container-mmrrcc.o .libs/molecules-container-gltf.o .libs/coot-molecule-refine.o .libs/molecules-container-superpose.o .libs/rigid-body-fit.o .libs/moorhen-h-bonds.o .libs/molecules-container-bucca-ml-growing.o .libs/instancing.o .libs/molecules-container-maps.o .libs/coot-molecule-change-chain-id.o .libs/blender-mesh.o .libs/coot-molecule-blender.o .libs/molecules-container-blender.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lMoleculesToTrianglesCXXClasses -lMoleculesToTrianglesCXXSurface -lcoot-ligand -lcoot-pli -lcoot-ideal -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-analysis -lcoot-isosurface -lcoot-map-heavy -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coords -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-api.so.0 -o .libs/libcoot-api.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-api.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-api.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-api.so.0.0.0 libcoot-api.so.0 || { rm -f libcoot-api.so.0 && ln -s libcoot-api.so.0.0.0 libcoot-api.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-api.so.0.0.0 libcoot-api.so || { rm -f libcoot-api.so && ln -s libcoot-api.so.0.0.0 libcoot-api.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-api.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-api.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /bin/sh ../libtool --mode=install /usr/bin/install -c _coot_headless_api.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_coot_headless_api.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/api; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined -Wl,-z,relro -o _coot_headless_api.la -rpath /usr/lib/python3/dist-packages _coot_headless_api_la-wrap-coot-api.lo _coot_headless_api_la-molecules-container-swig.lo libcoot-api.la -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/_coot_headless_api_la-wrap-coot-api.o .libs/_coot_headless_api_la-molecules-container-swig.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-api -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot_headless_api.so.0 -o .libs/_coot_headless_api.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_coot_headless_api.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot_headless_api.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot_headless_api.so.0.0.0 _coot_headless_api.so.0 || { rm -f _coot_headless_api.so.0 && ln -s _coot_headless_api.so.0.0.0 _coot_headless_api.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot_headless_api.so.0.0.0 _coot_headless_api.so || { rm -f _coot_headless_api.so && ln -s _coot_headless_api.so.0.0.0 _coot_headless_api.so; }; }) libtool: install: /usr/bin/install -c .libs/_coot_headless_api.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot_headless_api.la libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/install -c -m 644 coot_headless_api.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' Byte-compiling python modules... coot_headless_api.py Byte-compiling python modules (optimized versions) ... coot_headless_api.py /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/api' /usr/bin/install -c -m 644 coot-molecule.hh make-a-dodec.hh lsq-results.hh colour-functions.hh gensurf.hh validation-information.hh coot-colour.hh ghost-molecule-display.hh residue-validation-information.hh molecules-container.hh ncs.hh geometry-graphs.hh header-info.hh rama-plot-phi-psi.hh superpose-results.hh add-terminal-residue.hh interfaces.hh moorhen-h-bonds.hh atom-pull.hh rigid-body-fit.hh svg-store-key.hh phi-psi-prob.hh saved-strand-info.hh simple-molecule.hh generic-3d-lines.hh cell.hh coot-simple-molecule.hh api-cell.hh bond-colour.hh make-instanced-graphical-bonds.hh symmetry-info.hh instancing.hh merge-molecule-results-info-t.hh coot-molecule-bonds.hh clipper-ccp4-map-file-wrapper.hh blender-mesh.hh plain-atom-overlap.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/api' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/api' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/api' Making install in layla make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-layla.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-layla.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/layla; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-layla.la -rpath /usr/lib/aarch64-linux-gnu layla_embedded.lo generators.lo notifier.lo signals.lo state.lo ui.lo utils.lo ligand_editor_canvas/core.lo ligand_editor_canvas.lo ligand_editor_canvas/model.lo ligand_editor_canvas/tools.lo ligand_editor_canvas/render.lo python_utils.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/layla_embedded.o .libs/generators.o .libs/notifier.o .libs/signals.o .libs/state.o .libs/ui.o .libs/utils.o ligand_editor_canvas/.libs/core.o .libs/ligand_editor_canvas.o ligand_editor_canvas/.libs/model.o ligand_editor_canvas/.libs/tools.o ligand_editor_canvas/.libs/render.o .libs/python_utils.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-layla.so.0 -o .libs/libcoot-layla.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-layla.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-layla.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-layla.so.0.0.0 libcoot-layla.so.0 || { rm -f libcoot-layla.so.0 && ln -s libcoot-layla.so.0.0.0 libcoot-layla.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-layla.so.0.0.0 libcoot-layla.so || { rm -f libcoot-layla.so && ln -s libcoot-layla.so.0.0.0 libcoot-layla.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-layla.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-layla.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c layla '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' libtool: warning: 'libcoot-layla.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/layla /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin/layla /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/layla' /usr/bin/install -c -m 644 layla_embedded.hpp generators.hpp notifier.hpp ui.hpp utils.hpp state.hpp ligand_editor_canvas/core.hpp ligand_editor_canvas/model.hpp ligand_editor_canvas/tools.hpp ligand_editor_canvas/render.hpp ligand_editor_canvas.hpp python_utils.hpp '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/layla' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/ui' /usr/bin/install -c -m 644 layla.ui '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/ui' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' Making install in validation-graphs make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-validation-graphs.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-validation-graphs.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/validation-graphs; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-validation-graphs.la -rpath /usr/lib/aarch64-linux-gnu residue-validation-information.lo validation-graph-widget.lo validation-graphs.lo validation-information.lo sequence-view-widget.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/residue-validation-information.o .libs/validation-graph-widget.o .libs/validation-graphs.o .libs/validation-information.o .libs/sequence-view-widget.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ideal -lcoot-map-heavy -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-analysis -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-validation-graphs.so.0 -o .libs/libcoot-validation-graphs.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-validation-graphs.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-validation-graphs.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so.0 || { rm -f libcoot-validation-graphs.so.0 && ln -s libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so || { rm -f libcoot-validation-graphs.so && ln -s libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-validation-graphs.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-validation-graphs.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/test-validation' /usr/bin/install -c -m 644 residue-validation-information.hh validation-information.hh validation-graphs.hh validation-graph-widget.hh sequence-view-widget.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot/test-validation' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' Making install in src make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make install-am make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libcootsumo.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcootsumo.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/src; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootsumo.la -rpath /usr/lib/aarch64-linux-gnu init_coot_as_python_module.lo boids.lo boot-python.lo atom-overlaps.lo git-revision-count.lo scm-boot-guile.lo c-interface-analysis.lo c-interface-bonds.lo c-interface-build.lo c-interface-build-morph.lo c-interface-build-main-chain.lo c-interface-build-side-chain.lo c-interface-build-symmetry.lo c-interface-build-gui.lo c-interface-curlew.lo c-interface-database.lo c-interface-gui.lo c-interface-gtk2.lo c-interface-info.lo c-interface-kk.lo c-interface-image.lo c-interface-ligands-gui.lo c-interface-ligands.lo c-interface-maps.lo c-interface-mmdb.lo c-interface-mogul.lo c-interface-mogul-scripting.lo c-interface-mutate.lo c-interface-ncs.lo c-interface-network.lo c-interface-nucleotides.lo c-interface-pisa.lo c-interface-pisa-gui.lo c-interface-preferences.lo c-interface-python.lo c-interface-refine.lo c-interface-residues.lo c-interface-refmac.lo simple-refmac.lo c-interface-scm.lo c-interface-sequence.lo c-interface-sfs.lo c-interface-sharpen.lo c-interface-superpose.lo c-interface-validate.lo c-interface-view.lo c-interface-widgets.lo c-interface-waters.lo c-interface-waters-gui.lo c-interface.lo c-interface-test.lo cc-interface-alignment.lo cc-interface-graphics.lo cc-interface-merge.lo cc-interface-molecular-representation.lo cc-interface-molecular-symmetry.lo cc-interface-scripting.lo cc-interface-map-utils.lo cc-interface-png.lo cc-interface-user-defined-atom-colours.lo cfc.lo change-dir.lo cmtz-interface.lo command-line.lo command-line-extern.lo coot-application.lo coot-colour.lo coot-align.lo coot-nomenclature.lo coot-glue-gtk2.lo coot-glue-gtk2-python.lo coot-hydrogens.lo coot-phi-psi.lo coot_pythonmodule.lo coot-setup-python.lo coot_wrap_guile.lo curlew-gtk4.lo draw.lo graphics-info-tick-function.lo drag-and-drop.lo draw-generic-display-objects.lo dynamic-validation.lo eyes.lo event-controller-callbacks.lo fit-loop-gui.lo flev.lo framebuffer.lo old-generic-display-object.lo gaussian-surface.lo generic-objects.lo geometry-graphs.lo get-residue.lo get-monomer.lo gl-rama-plot.lo globjects.lo globularize.lo graphics-info.lo graphics-info-defines.lo graphics-info-defines-gtk4.lo graphics-info-draw.lo graphics-info-draw-models.lo graphics-info-graphs.lo graphics-info-gui.lo graphics-info-init.lo graphics-info-intermediate.lo graphics-info-modelling.lo graphics-info-navigation.lo graphics-info-navigation-gtk2.lo graphics-info-preferences.lo graphics-info-network.lo graphics-info-mutate.lo graphics-info-lsq.lo graphics-info-opengl.lo graphics-info-pick.lo graphics-info-refmac.lo graphics-info-render.lo graphics-info-render-scene.lo graphics-info-residues.lo graphics-info-refine.lo graphics-info-scripting.lo graphics-info-state.lo graphics-info-statics.lo graphics-info-superpose.lo graphics-info-trackball.lo graphics-ligand-view.lo graphics-ligand-mesh-molecule.lo gl-matrix.lo gtkglarea-rama-plot.lo gtk-manual.lo gtk-widget-conversion-utils.lo gtk-utils.lo HUDMesh.lo HUDTextureMesh.lo Instanced-Markup-Mesh.lo init-from-gtkbuilder.lo key-bindings.lo LinesMesh.lo LigandViewMesh.lo lbg-callbacks-outer.lo lbg-interface.lo Model.lo make-a-dodec.lo matrix-utils.lo Mesh.lo Mesh-from-glTF.lo Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds.lo meshed-generic-display-object.lo model-molecule-meshes.lo molecule-class-info.lo molecule-class-info-alignment.lo molecule-class-info-analysis.lo molecule-class-info-bonds.lo molecule-class-info-build.lo molecule-class-info-maps.lo molecule-class-info-maps-2.lo molecule-class-info-molecular-symmetry.lo molecule-class-info-kdc.lo molecule-class-info-dots.lo molecule-class-info-dots-internal.lo molecule-class-info-other.lo molecule-class-info-mutate.lo molecule-class-info-residues.lo molecule-class-info-refine.lo molecule-class-info-kk.lo molecule-class-info-surface.lo molecule-class-info-string.lo molecule-class-info-patterson.lo molecule-class-info-ncs.lo molecule-class-info-mol-tris.lo molecule-class-info-widget-work.lo molecule-class-info-geometry.lo molecular-mesh-generator.lo molecular-mesh-generator-mol-tris.lo obj_loader.lo pick.lo positron-plot.lo probe-clash-score.lo protein_db-interface.lo pumpkin.lo python-classes.lo Particle.lo read-phs.lo read-cif.lo rama_mousey.lo rama_plot_with_canvas.lo text-rendering-utils.lo restraints-editor.lo rsr-functions.lo screendump-tga.lo sdf-interface.lo sequence-view.lo seq-view-interface.lo Shader.lo sound.lo startup-utils.lo testing.lo testing-2.lo Texture.lo TextureMesh.lo tomo-tools.lo trackball.lo user-mods.lo xmap-utils.lo rama-plot-phi-psi.lo spherical-density.lo single-map-properties-dialog.lo validation.lo view.lo widget-from-builder.lo -fopenmp ../api/libcoot-api.la ../pli/libcoot-pli.la ../layla/libcoot-layla.la ../ligand/libcoot-res-tracer.la ../ligand/libcoot-ligand.la ../validation-graphs/libcoot-validation-graphs.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../compat/libcoot-compat.la -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lm -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lfreetype -lsqlite3 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/init_coot_as_python_module.o .libs/boids.o .libs/boot-python.o .libs/atom-overlaps.o .libs/git-revision-count.o .libs/scm-boot-guile.o .libs/c-interface-analysis.o .libs/c-interface-bonds.o .libs/c-interface-build.o .libs/c-interface-build-morph.o .libs/c-interface-build-main-chain.o .libs/c-interface-build-side-chain.o .libs/c-interface-build-symmetry.o .libs/c-interface-build-gui.o .libs/c-interface-curlew.o .libs/c-interface-database.o .libs/c-interface-gui.o .libs/c-interface-gtk2.o .libs/c-interface-info.o .libs/c-interface-kk.o .libs/c-interface-image.o .libs/c-interface-ligands-gui.o .libs/c-interface-ligands.o .libs/c-interface-maps.o .libs/c-interface-mmdb.o .libs/c-interface-mogul.o .libs/c-interface-mogul-scripting.o .libs/c-interface-mutate.o .libs/c-interface-ncs.o .libs/c-interface-network.o .libs/c-interface-nucleotides.o .libs/c-interface-pisa.o .libs/c-interface-pisa-gui.o .libs/c-interface-preferences.o .libs/c-interface-python.o .libs/c-interface-refine.o .libs/c-interface-residues.o .libs/c-interface-refmac.o .libs/simple-refmac.o .libs/c-interface-scm.o .libs/c-interface-sequence.o .libs/c-interface-sfs.o .libs/c-interface-sharpen.o .libs/c-interface-superpose.o .libs/c-interface-validate.o .libs/c-interface-view.o .libs/c-interface-widgets.o .libs/c-interface-waters.o .libs/c-interface-waters-gui.o .libs/c-interface.o .libs/c-interface-test.o .libs/cc-interface-alignment.o .libs/cc-interface-graphics.o .libs/cc-interface-merge.o .libs/cc-interface-molecular-representation.o .libs/cc-interface-molecular-symmetry.o .libs/cc-interface-scripting.o .libs/cc-interface-map-utils.o .libs/cc-interface-png.o .libs/cc-interface-user-defined-atom-colours.o .libs/cfc.o .libs/change-dir.o .libs/cmtz-interface.o .libs/command-line.o .libs/command-line-extern.o .libs/coot-application.o .libs/coot-colour.o .libs/coot-align.o .libs/coot-nomenclature.o .libs/coot-glue-gtk2.o .libs/coot-glue-gtk2-python.o .libs/coot-hydrogens.o .libs/coot-phi-psi.o .libs/coot_pythonmodule.o .libs/coot-setup-python.o .libs/coot_wrap_guile.o .libs/curlew-gtk4.o .libs/draw.o .libs/graphics-info-tick-function.o .libs/drag-and-drop.o .libs/draw-generic-display-objects.o .libs/dynamic-validation.o .libs/eyes.o .libs/event-controller-callbacks.o .libs/fit-loop-gui.o .libs/flev.o .libs/framebuffer.o .libs/old-generic-display-object.o .libs/gaussian-surface.o .libs/generic-objects.o .libs/geometry-graphs.o .libs/get-residue.o .libs/get-monomer.o .libs/gl-rama-plot.o .libs/globjects.o .libs/globularize.o .libs/graphics-info.o .libs/graphics-info-defines.o .libs/graphics-info-defines-gtk4.o .libs/graphics-info-draw.o .libs/graphics-info-draw-models.o .libs/graphics-info-graphs.o .libs/graphics-info-gui.o .libs/graphics-info-init.o .libs/graphics-info-intermediate.o .libs/graphics-info-modelling.o .libs/graphics-info-navigation.o .libs/graphics-info-navigation-gtk2.o .libs/graphics-info-preferences.o .libs/graphics-info-network.o .libs/graphics-info-mutate.o .libs/graphics-info-lsq.o .libs/graphics-info-opengl.o .libs/graphics-info-pick.o .libs/graphics-info-refmac.o .libs/graphics-info-render.o .libs/graphics-info-render-scene.o .libs/graphics-info-residues.o .libs/graphics-info-refine.o .libs/graphics-info-scripting.o .libs/graphics-info-state.o .libs/graphics-info-statics.o .libs/graphics-info-superpose.o .libs/graphics-info-trackball.o .libs/graphics-ligand-view.o .libs/graphics-ligand-mesh-molecule.o .libs/gl-matrix.o .libs/gtkglarea-rama-plot.o .libs/gtk-manual.o .libs/gtk-widget-conversion-utils.o .libs/gtk-utils.o .libs/HUDMesh.o .libs/HUDTextureMesh.o .libs/Instanced-Markup-Mesh.o .libs/init-from-gtkbuilder.o .libs/key-bindings.o .libs/LinesMesh.o .libs/LigandViewMesh.o .libs/lbg-callbacks-outer.o .libs/lbg-interface.o .libs/Model.o .libs/make-a-dodec.o .libs/matrix-utils.o .libs/Mesh.o .libs/Mesh-from-glTF.o .libs/Mesh-from-graphical-bonds-instanced.o .libs/Mesh-from-graphical-bonds.o .libs/meshed-generic-display-object.o .libs/model-molecule-meshes.o .libs/molecule-class-info.o .libs/molecule-class-info-alignment.o .libs/molecule-class-info-analysis.o .libs/molecule-class-info-bonds.o .libs/molecule-class-info-build.o .libs/molecule-class-info-maps.o .libs/molecule-class-info-maps-2.o .libs/molecule-class-info-molecular-symmetry.o .libs/molecule-class-info-kdc.o .libs/molecule-class-info-dots.o .libs/molecule-class-info-dots-internal.o .libs/molecule-class-info-other.o .libs/molecule-class-info-mutate.o .libs/molecule-class-info-residues.o .libs/molecule-class-info-refine.o .libs/molecule-class-info-kk.o .libs/molecule-class-info-surface.o .libs/molecule-class-info-string.o .libs/molecule-class-info-patterson.o .libs/molecule-class-info-ncs.o .libs/molecule-class-info-mol-tris.o .libs/molecule-class-info-widget-work.o .libs/molecule-class-info-geometry.o .libs/molecular-mesh-generator.o .libs/molecular-mesh-generator-mol-tris.o .libs/obj_loader.o .libs/pick.o .libs/positron-plot.o .libs/probe-clash-score.o .libs/protein_db-interface.o .libs/pumpkin.o .libs/python-classes.o .libs/Particle.o .libs/read-phs.o .libs/read-cif.o .libs/rama_mousey.o .libs/rama_plot_with_canvas.o .libs/text-rendering-utils.o .libs/restraints-editor.o .libs/rsr-functions.o .libs/screendump-tga.o .libs/sdf-interface.o .libs/sequence-view.o .libs/seq-view-interface.o .libs/Shader.o .libs/sound.o .libs/startup-utils.o .libs/testing.o .libs/testing-2.o .libs/Texture.o .libs/TextureMesh.o .libs/tomo-tools.o .libs/trackball.o .libs/user-mods.o .libs/xmap-utils.o .libs/rama-plot-phi-psi.o .libs/spherical-density.o .libs/single-map-properties-dialog.o .libs/validation.o .libs/view.o .libs/widget-from-builder.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-api -lcoot-pli -lcoot-layla -lcoot-res-tracer -lcoot-ligand -lcoot-validation-graphs -lcoot-lidia-core -lcoot-isosurface -lcoot-cabuild -lcoot-skeleton -lcoot-AngleInfo -lcoot-db-main -lcoot-high-res -lcoot-ideal -lcoot-geometry -lcoot-coords -lccp4mg-utils -lcoot-map-heavy -lcoot-map-utils -lcoot-coord-extras -lcoot-coord-utils -lcoot-utils -lcoot-mini-mol -lcoot-analysis -lcoot-protein-db -lcootilus -lcootaneer -lMoleculesToTrianglesCXXClasses -lMoleculesToTrianglesCXXSurface -lcoot-compat -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lpython3.13 -lepoxy -lgsl -lgslcblas -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lfreetype -lsqlite3 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -fopenmp -Wl,-soname -Wl,libcootsumo.so.0 -o .libs/libcootsumo.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcootsumo.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootsumo.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootsumo.so.0.0.0 libcootsumo.so.0 || { rm -f libcootsumo.so.0 && ln -s libcootsumo.so.0.0.0 libcootsumo.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootsumo.so.0.0.0 libcootsumo.so || { rm -f libcootsumo.so && ln -s libcootsumo.so.0.0.0 libcootsumo.so; }; }) libtool: install: /usr/bin/install -c .libs/libcootsumo.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootsumo.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c coot coot-density-score-by-residue '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' /bin/sh ../libtool --mode=install /usr/bin/install -c Coot coot-density-score-by-residue-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' libtool: warning: 'libcootsumo.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../density-contour/libcoot-isosurface.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../layla/libcoot-layla.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coords/libcoot-coords.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/Coot /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/Coot libtool: warning: 'libcootsumo.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-extras.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coords/libcoot-coords.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../mini-mol/libcoot-mini-mol.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ligand/libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../analysis/libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../db-main/libcoot-db-main.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ccp4mg-utils/libccp4mg-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../cootaneer/libcootaneer.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-density-score-by-residue-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-density-score-by-residue-bin /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /bin/sh ../libtool --mode=install /usr/bin/install -c _coot.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_coot.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/src; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined libcootsumo.la ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../geometry/libcoot-geometry.la ../pli/libcoot-pli.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o _coot.la -rpath /usr/lib/python3/dist-packages coot.lo coot_wrap_python.lo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot.o .libs/coot_wrap_python.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcootsumo -lcoot-coord-utils -lcoot-coords -lcoot-geometry -lcoot-pli -lcoot-lidia-core -lcoot-utils -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot.so.0 -o .libs/_coot.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_coot.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot.so.0.0.0 _coot.so.0 || { rm -f _coot.so.0 && ln -s _coot.so.0.0.0 _coot.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot.so.0.0.0 _coot.so || { rm -f _coot.so && ln -s _coot.so.0.0.0 _coot.so; }; }) libtool: install: /usr/bin/install -c .libs/_coot.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot.la libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' make install-exec-hook make[6]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[6]: Nothing to be done for 'install-exec-hook'. make[6]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/shaders' /usr/bin/install -c -m 644 atom-label.shader blur.shader central-cube.shader hud-text.shader hud-bars.shader hud-labels.shader map.shader model.shader screen.shader moleculestotriangles.shader instanced-objects.shader particles.shader lines.shader draw-map-cap.shader lines-pulse.shader rama-balls.shader hud-geometry-tooltip-text.shader residue-markers.shader extra-distance-restraints.shader residue-markers-for-ssao.shader model-as-mesh.shader ligand-view.shader symmetry-atoms-lines.shader rama-plot-phi-psi-markers.shader rama-plot-axes-and-ticks.shader hud-image-texture.shader hud-lines.shader depth-of-field.shader blur-x.shader blur-y.shader texture-meshes.shader camera-facing-quad-shader-for-testing.shader outline-of-active-residue.shader meshes.shader meshes-for-shadow-map.shader instanced-meshes-for-shadow-map.shader meshes-with-shadows.shader instanced-meshes-with-shadows.shader meshes-for-ssao.shader effects.shader '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/shaders' /usr/bin/install -c -m 644 9.ssao_blur.shader 9.ssao_geometry.shader 9.ssao.shader instanced-meshes-for-ssao.shader texture-meshes-for-ssao.shader texture-meshes-with-shadows.shader texture-meshes-shadow-map.shader shadow-map-image-texture.shader rotation-centre-cross-hairs-for-ssao.shader background-image.shader '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/shaders' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/glade' /usr/bin/install -c -m 644 geometry_graphs_builder.glade '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/glade' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/install -c -m 644 coot.py coot.pth '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' Byte-compiling python modules... coot.py Byte-compiling python modules (optimized versions) ... coot.py /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/install -c coot.py coot.pth '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot' /usr/bin/install -c -m 644 crunch-model.hh '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/include/coot' make[5]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/src' Making install in ui make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/ui' /usr/bin/install -c -m 644 coot-gtk4.ui restraints-editor.ui preferences-gtk4.ui single-map-properties-dialog-gtk4.ui '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/ui' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ui' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/appdata' /usr/bin/install -c -m 644 coot.appdata.xml '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/appdata' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/applications' /usr/bin/install -c -m 644 coot.desktop '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/applications' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' /usr/bin/install -c -m 644 standard-residues.pdb '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_install --buildsystem cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/coot-1.1.09+dfsg -B/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootapi.so.1.1 -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootapi.so -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/standard-residues.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/syminfo.lib -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/Makefile -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/Makefile.in -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/theor-helix-70.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-BETA1-4.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-ALPHA1-6.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-ALPHA1-3.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/pyranose-pyranose-via-ALPHA1-2.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-XYP-BMA.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-NAG-ASN.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-6.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-4.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-3.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-BETA1-2.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA2-3.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA1-6.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA1-3.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-pyranose-core-ALPHA1-2.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-NAG-core-NAG-SER.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-FUC-core-ALPHA1-6.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-FUC-core-ALPHA1-3.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/link-by-torsion-to-FUC-core-ALPHA1-2.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/XYP-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/SIA-pyranose-via-ALPHA2-3.pdb -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/NAG-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/Makefile.am -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/MAN-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/GLC-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/GAL-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/FUL-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/FUC-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/BMA-decorations.tab -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/pdb-templates/ASN-NAG-via-NAG-ASN.pdb -- Up-to-date: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/Makefile -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/Makefile.in -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-val.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-trp.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-thr.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-ser.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-pro.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-phetyr.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-met.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-lys.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-leu.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-ile.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-his.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-glu.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-gln.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-cys.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-asp.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-asn.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rota500-arg.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rama500-pro.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rama500-prepro.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rama500-gly-sym.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/rama500-general.data -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data/Makefile.am -- Up-to-date: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/Makefile -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/Makefile.in -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/metal-S-distance.table -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/metal-O-distance.table -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/metal-N-distance.table -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal/Makefile.am -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/chapi.cpython-313-aarch64-linux-gnu.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/chapi.cpython-313-aarch64-linux-gnu.so" to "" -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/libcootapi.so.1.1 -- Installing: /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/libcootapi.so make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' dh_auto_install --sourcedirectory data cd data && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' Making install in rama-coeffs make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/rama/zo-tables' install --strip-program=true -m 644 all-non-pre-pro.tab coeffsolution.dat '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/rama/zo-tables' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/rama-coeffs' Making install in cho-models make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-models' install --strip-program=true -m 644 model-level-1-NAG-NAG-ASN-ASN.tab model-level-4-BMA-BETA1-6-BMA.tab model-level-5-MAN-ALPHA1-3-BMA.tab model-level-2-FUC-BETA1-3-NAG.tab model-level-4-BMA-BETA1-6-MAN.tab model-level-5-MAN-ALPHA1-3-MAN.tab model-level-2-FUC-BETA1-6-NAG.tab model-level-4-MAN-ALPHA1-3-BMA.tab model-level-5-MAN-ALPHA1-6-BMA.tab model-level-2-FUL-ALPHA1-3-NAG.tab model-level-4-MAN-ALPHA1-4-BMA.tab model-level-5-MAN-ALPHA1-6-MAN.tab model-level-2-FUL-ALPHA1-6-NAG.tab model-level-4-MAN-ALPHA1-6-BMA.tab model-level-5-NAG-BETA1-2-MAN.tab model-level-2-NAG-BETA1-4-NAG.tab model-level-4-MAN-ALPHA1-6-MAN.tab model-level-6-GAL-BETA1-4-NAG.tab model-level-3-BMA-BETA1-3-NAG.tab model-level-4-NAG-BETA1-4-BMA.tab model-level-6-MAN-ALPHA1-2-MAN.tab model-level-3-BMA-BETA1-4-NAG.tab model-level-5-BMA-BETA1-2-BMA.tab model-level-7-GLC-ALPHA1-3-MAN.tab model-level-3-MAN-ALPHA1-4-NAG.tab model-level-5-BMA-BETA1-6-MAN.tab model-level-4-BMA-BETA1-3-BMA.tab model-level-5-MAN-ALPHA1-2-MAN.tab '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-models' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-models' Making install in cho-acedrg make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-acedrg' install --strip-program=true -m 644 BMA-acedrg.cif FUC-acedrg.cif MAN-acedrg.cif NAG-acedrg.cif SIA-acedrg.cif XYP-acedrg.cif '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/cho-acedrg' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/cho-acedrg' Making install in metal make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal' install --strip-program=true -m 644 metal-O-distance.table metal-S-distance.table metal-N-distance.table '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data/metal' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data/metal' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' install --strip-program=true -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz ligands.db syminfo.lib '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/data' install: WARNING: ignoring --strip-program option as -s option was not specified make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/data' dh_auto_install --sourcedirectory rama-data cd rama-data && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data' install --strip-program=true -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/share/coot/rama-data' install: WARNING: ignoring --strip-program option as -s option was not specified make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/rama-data' dh_auto_install --sourcedirectory python cd python && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install --strip-program=true -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py coot_fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py coot_ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_generator_3d_import.py gui_hole.py gui_prosmart.py get_recent_pdbe.py jligand.py jligand_gui.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 coot_redefine_functions.py user_define_restraints.py template_key_bindings.py gui_add_linked_cho.py coot_ligand_check.py run_mogul.py coot_contact_score_isolated_ligand.py gui_contact_score_isolated_ligand.py dictionary_generators.py cho_restraints_from_models.py interactive_nudge_residues.py pdbe_validation_data.py pathology_plots.py ligand_validation_sliders.py enhanced_ligand.py gui_ligand_sliders.py coot_sharpen_blur.py coot_acedrg_link.py coot_toolbuttons.py rcrane_loader.py add_linked_cho.py coot_find_baddies.py coot_chemical_feature_clusters.py coot_res_spec_utils.py coot_output_to_window.py populate_python_menus.py coot_hole.py refine.py what_check.py coot_testing_utils.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install: WARNING: ignoring --strip-program option as -s option was not specified Byte-compiling python modules... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py Byte-compiling python modules (optimized versions) ... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pycoot_fitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pycoot_ncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.pycoot_generator_3d_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pycoot_redefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pycoot_ligand_check.pyrun_mogul.pycoot_contact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pydictionary_generators.pycho_restraints_from_models.pyinteractive_nudge_residues.pypdbe_validation_data.pypathology_plots.pyligand_validation_sliders.pyenhanced_ligand.pygui_ligand_sliders.pycoot_sharpen_blur.pycoot_acedrg_link.pycoot_toolbuttons.pyrcrane_loader.pyadd_linked_cho.pycoot_find_baddies.pycoot_chemical_feature_clusters.pycoot_res_spec_utils.pycoot_output_to_window.pypopulate_python_menus.pycoot_hole.pyrefine.pywhat_check.pycoot_testing_utils.py make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' dh_auto_install --sourcedirectory pyrogen cd pyrogen && make -j12 install DESTDIR=/build/reproducible-path/coot-1.1.09\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ../libtool --mode=install install --strip-program=true libcoot_py_restraints.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install --strip-program=true pyrogen '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 pyrogen.py atom_types.py jay_util.py tautomer.py pyrogen_swig.py coot_git.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install: WARNING: ignoring --strip-program option as -s option was not specified libtool: warning: relinking 'libcoot_py_restraints.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) Byte-compiling python modules... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py Byte-compiling python modules (optimized versions) ... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 libtool: install: install --strip-program=true .libs/libcoot_py_restraints.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.so.0.0.0 install: WARNING: ignoring --strip-program option as -s option was not specified libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0 || { rm -f libcoot_py_restraints.so.0 && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so || { rm -f libcoot_py_restraints.so && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so; }; }) libtool: install: install --strip-program=true .libs/libcoot_py_restraints.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.la install: WARNING: ignoring --strip-program option as -s option was not specified libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' /bin/sh ../libtool --mode=install install --strip-program=true _pyrogen_swig.la pyrogen_boost.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_pyrogen_swig.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/pyrogen-swig.o .libs/restraints.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-ideal -lcoot-coord-utils -lcoot-lidia-core -lcoot-analysis -lcoot-geometry -lcoot-utils -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,_pyrogen_swig.so.0 -o .libs/_pyrogen_swig.so.0.0.0 libtool: install: install --strip-program=true .libs/_pyrogen_swig.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 install: WARNING: ignoring --strip-program option as -s option was not specified libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0 || { rm -f _pyrogen_swig.so.0 && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so || { rm -f _pyrogen_swig.so && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so; }; }) libtool: install: install --strip-program=true .libs/_pyrogen_swig.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.la install: WARNING: ignoring --strip-program option as -s option was not specified libtool: warning: relinking 'pyrogen_boost.la' libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/restraints-boost.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-pli -lcoot-ideal -lcoot-coord-utils -lcoot-geometry -lcoot-coords -lcoot-lidia-core -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,pyrogen_boost.so.0 -o .libs/pyrogen_boost.so.0.0.0 libtool: install: install --strip-program=true .libs/pyrogen_boost.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 install: WARNING: ignoring --strip-program option as -s option was not specified libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so.0 || { rm -f pyrogen_boost.so.0 && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so || { rm -f pyrogen_boost.so && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so; }; }) libtool: install: install --strip-program=true .libs/pyrogen_boost.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.la install: WARNING: ignoring --strip-program option as -s option was not specified libtool: warning: remember to run 'libtool --finish /usr/lib/python3/dist-packages' make install-exec-hook make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[4]: Nothing to be done for 'install-exec-hook'. make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' # Drop the remaining *.la files find debian/tmp -name '*.la' | xargs --no-run-if-empty rm # Adjust the LD_LIBRARY_PATH setting sed -i 's/${exec_prefix}\/libexec\/Coot/LD_LIBRARY_PATH=${prefix}\/lib\/'aarch64-linux-gnu'\/coot ${exec_prefix}\/libexec\/Coot/' \ debian/tmp/usr/bin/coot sed -i 's/LD_LIBRARY_PATH=$COOT_PREFIX\/lib/LD_LIBRARY_PATH=$COOT_PREFIX\/lib\/'aarch64-linux-gnu'\/coot/g' \ debian/tmp/usr/bin/* sed -i 's/LD_LIBRARY_PATH=$prfx\/lib/LD_LIBRARY_PATH=\/usr\/lib\/'aarch64-linux-gnu'\/coot/g' \ debian/tmp/usr/bin/pyrogen # decode image and convert to smaller sizes # TODO: let us reuse pixmaps/coot-icon.png uudecode < debian/coot-button-64x64.png.uu for g in 22x22 24x24 32x32 48x48; do \ convert -geometry $g coot-button-64x64.png coot-button-$g.png;\ done # install the newly generated png's in the hicolor theme for g in 22x22 24x24 32x32 48x48 64x64; do \ install -D coot-button-$g.png debian/tmp/usr/share/icons/hicolor/$g/apps/coot.png;\ done make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_install -i --exclude=scheme make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_install -Ncoot-data -Ncoot-doc debian/rules execute_after_dh_install-arch make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' rm debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootapi.so* make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_installdocs RELEASE-NOTES # debian/citation.bib -- not available (?) make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_installchangelogs dh_installman dh_python3 I: dh_python3 fs:404: removing symlink: debian/coot/usr/lib/python3/dist-packages/_coot.so I: dh_python3 fs:406: renaming debian/coot/usr/lib/python3/dist-packages/_coot.so.0.0.0 to _coot.so I: dh_python3 fs:421: renaming _coot.so to _coot.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:300: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/_coot.so.0 I: dh_python3 fs:404: removing symlink: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.so I: dh_python3 fs:406: renaming debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.so.0.0.0 to _coot_headless_api.so I: dh_python3 fs:421: renaming _coot_headless_api.so to _coot_headless_api.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:300: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.so.0 I: dh_python3 fs:404: removing symlink: debian/coot/usr/lib/python3/dist-packages/_pyrogen_swig.so I: dh_python3 fs:406: renaming debian/coot/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 to _pyrogen_swig.so I: dh_python3 fs:421: renaming _pyrogen_swig.so to _pyrogen_swig.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:300: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/_pyrogen_swig.so.0 I: dh_python3 fs:404: removing symlink: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.so I: dh_python3 fs:406: renaming debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 to pyrogen_boost.so I: dh_python3 fs:421: renaming pyrogen_boost.so to pyrogen_boost.cpython-313-aarch64-linux-gnu.so I: dh_python3 fs:300: removing dangling symlink: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.so.0 dh_icons dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_shlibdeps -l/usr/lib/aarch64-linux-gnu/coot dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: symbol cairo_get_reference_count used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-api.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol cairo_destroy used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-api.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.cpython-313-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyCFunction_Type: it's probably a plugin dpkg-shlibdeps: warning: 93 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.cpython-313-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflate used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util13int_to_stringB5cxx11Ei used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-pli.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util16sharpen_blur_mapEPN7clipper4XmapIfEEf used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util16density_at_pointERKN7clipper4XmapIfEERKNS1_10Coord_orthE used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util13calc_atom_mapEPN4mmdb7ManagerEiRKN7clipper4CellERKNS4_10SpacegroupERKNS4_13Grid_samplingE used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN4coot4util7extentsEPN4mmdb7ManagerEi used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 was not linked against libblas.so.3 (it uses none of the library's symbols) make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libcootapi-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'coot' in '../coot_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'coot-dbgsym' in '../coot-dbgsym_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'coot-data' in '../coot-data_1.1.09+dfsg-4_all.deb'. dpkg-deb: building package 'coot-doc' in '../coot-doc_1.1.09+dfsg-4_all.deb'. dpkg-deb: building package 'libcootapi-dev' in '../libcootapi-dev_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'libcootapi1.1-dbgsym' in '../libcootapi1.1-dbgsym_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'libcootapi1.1' in '../libcootapi1.1_1.1.09+dfsg-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../coot_1.1.09+dfsg-4_arm64.buildinfo dpkg-genchanges --build=binary -O../coot_1.1.09+dfsg-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/307709/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/307709/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/307709 and its subdirectories I: Current time: Wed Feb 25 15:59:43 +14 2026 I: pbuilder-time-stamp: 1771984783 + false + set +x Wed Feb 25 01:59:43 UTC 2026 I: Signing ./b2/coot_1.1.09+dfsg-4_arm64.buildinfo as coot_1.1.09+dfsg-4_arm64.buildinfo.asc Wed Feb 25 01:59:43 UTC 2026 I: Signed ./b2/coot_1.1.09+dfsg-4_arm64.buildinfo as ./b2/coot_1.1.09+dfsg-4_arm64.buildinfo.asc Wed Feb 25 01:59:43 UTC 2026 - build #2 for coot/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Wed Feb 25 01:59:43 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-RtVryUGV, removing. /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd: total 4644 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 19:09 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 19:36 b2 -rw-r--r-- 1 jenkins jenkins 2962 Jan 22 08:27 coot_1.1.09+dfsg-4.dsc -rw------- 1 jenkins jenkins 4728555 Jan 22 19:09 rbuildlog.kJ0pfSK /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b1: total 349032 -rw-r--r-- 1 jenkins jenkins 4724171 Jan 22 19:06 build.log -rw-r--r-- 1 jenkins jenkins 11128752 Jan 22 19:06 coot-data_1.1.09+dfsg-4_all.deb -rw-r--r-- 1 jenkins jenkins 243263324 Jan 22 19:08 coot-dbgsym_1.1.09+dfsg-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 2110112 Jan 22 19:08 coot-doc_1.1.09+dfsg-4_all.deb -rw-r--r-- 1 jenkins jenkins 53392 Jan 22 19:08 coot_1.1.09+dfsg-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2962 Jan 22 19:08 coot_1.1.09+dfsg-4.dsc -rw-r--r-- 1 jenkins jenkins 21603 Jan 22 19:08 coot_1.1.09+dfsg-4_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 22485 Jan 22 19:08 coot_1.1.09+dfsg-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 3365 Jan 22 19:08 coot_1.1.09+dfsg-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 7779092 Jan 22 19:08 coot_1.1.09+dfsg-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1497 Jan 22 19:08 coot_1.1.09+dfsg-4_source.changes -rw-r--r-- 1 jenkins jenkins 82160 Jan 22 19:08 libcootapi-dev_1.1.09+dfsg-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 84581036 Jan 22 19:09 libcootapi1.1-dbgsym_1.1.09+dfsg-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 3214496 Jan 22 19:09 libcootapi1.1_1.1.09+dfsg-4_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b2: total 348828 -rw-r--r-- 1 jenkins jenkins 4724661 Jan 22 19:36 build.log -rw-r--r-- 1 jenkins jenkins 11122888 Jan 22 19:36 coot-data_1.1.09+dfsg-4_all.deb -rw-r--r-- 1 jenkins jenkins 243263324 Jan 22 19:36 coot-dbgsym_1.1.09+dfsg-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 2110104 Jan 22 19:36 coot-doc_1.1.09+dfsg-4_all.deb -rw-r--r-- 1 jenkins jenkins 53392 Jan 22 19:36 coot_1.1.09+dfsg-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2962 Jan 22 19:36 coot_1.1.09+dfsg-4.dsc -rw-r--r-- 1 jenkins jenkins 21603 Jan 22 19:36 coot_1.1.09+dfsg-4_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 22485 Jan 22 19:36 coot_1.1.09+dfsg-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 3365 Jan 22 19:36 coot_1.1.09+dfsg-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 7779092 Jan 22 19:36 coot_1.1.09+dfsg-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1497 Jan 22 19:36 coot_1.1.09+dfsg-4_source.changes -rw-r--r-- 1 jenkins jenkins 82160 Jan 22 19:36 libcootapi-dev_1.1.09+dfsg-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 84581036 Jan 22 19:36 libcootapi1.1-dbgsym_1.1.09+dfsg-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 3214496 Jan 22 19:36 libcootapi1.1_1.1.09+dfsg-4_arm64.deb Wed Jan 22 19:36:58 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Wed Jan 22 19:36:58 UTC 2025 I: coot_1.1.09+dfsg-4_arm64.changes: Format: 1.8 Date: Wed, 22 Jan 2025 03:13:31 -0500 Source: coot Binary: coot coot-data coot-dbgsym coot-doc libcootapi-dev libcootapi1.1 libcootapi1.1-dbgsym Architecture: all arm64 Version: 1.1.09+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Description: coot - model building program for macromolecular crystallography coot-data - various data files needed by Coot coot-doc - documentation for Coot libcootapi-dev - development files for libcoot libcootapi1.1 - shared library for coot Closes: 1080574 1085529 1093752 Changes: coot (1.1.09+dfsg-4) unstable; urgency=medium . [ Alexandre Detiste ] * Add build-dep on python3-setuptools (Closes: #1080574) * Fix SyntaxWarning (Closes: #1085529) * Apply Multi-Arch: hint . [ Andrius Merkys ] * Fix FTBFS issues with libatomic on riscv64 and mips64el (Closes: 1093752). Thanks Bo YU. Checksums-Sha1: 3d71440486887802cbafedbbcd8020eb95bf4451 11128752 coot-data_1.1.09+dfsg-4_all.deb 8ac960c04f781556626acec499786400b6c7cbfa 243263324 coot-dbgsym_1.1.09+dfsg-4_arm64.deb 642fec38980dd1606e2ee3052b056fa810b38cce 2110112 coot-doc_1.1.09+dfsg-4_all.deb 124520906e482d910841fd188446e16fb7370f46 21603 coot_1.1.09+dfsg-4_arm64.buildinfo 9104aa1efd8c6f90bcb6ccfff1c8312d84517c3b 7779092 coot_1.1.09+dfsg-4_arm64.deb 0ac1c3bcd6bfd3e6942375f9490c1faa0460695d 82160 libcootapi-dev_1.1.09+dfsg-4_arm64.deb 59c76ee9c547de668277e383e40d446094b2aeb8 84581036 libcootapi1.1-dbgsym_1.1.09+dfsg-4_arm64.deb f39c741e2e0a17762d7d8e396670de5c3d426095 3214496 libcootapi1.1_1.1.09+dfsg-4_arm64.deb Checksums-Sha256: c5d3cdde3c76500770652d2ce47a0b13ff8e5fb1e63f128c76af3686f7d6d666 11128752 coot-data_1.1.09+dfsg-4_all.deb 0434d616f7eddf48091734d74d091adcb8345b5659498315bc6796064e0f8133 243263324 coot-dbgsym_1.1.09+dfsg-4_arm64.deb 6cb59f75471b828227317183e08c16d5302f5fae302bd2235c02143859f10678 2110112 coot-doc_1.1.09+dfsg-4_all.deb b5b493fbbc07872a19a348e148c241741c1d0eceef53430d332f8ad373ff5e98 21603 coot_1.1.09+dfsg-4_arm64.buildinfo 977a61c78ed5b3bf8ef555b6d0d195807eac4573b4db27002438e4bad849e802 7779092 coot_1.1.09+dfsg-4_arm64.deb d327b9c0ee2b8fb5d7d8f15852582aa30839a66486a98c0a3d494726baafe47b 82160 libcootapi-dev_1.1.09+dfsg-4_arm64.deb 6cf28da58890dac6c6a2e86a02b82f9003a8b46cd83e7f4e0ccd0cc6c319beea 84581036 libcootapi1.1-dbgsym_1.1.09+dfsg-4_arm64.deb 680c15d3dd15cf97dc1893cf20afd80635828bed799e1342bd1f399cb47d775d 3214496 libcootapi1.1_1.1.09+dfsg-4_arm64.deb Files: 0675f8af0795804fd4e3fb035dd4a732 11128752 science optional coot-data_1.1.09+dfsg-4_all.deb a485297a697c8dd2fb7104fcb602a33d 243263324 debug optional coot-dbgsym_1.1.09+dfsg-4_arm64.deb e1e39c96be7ddb607461291c841fdc03 2110112 science optional coot-doc_1.1.09+dfsg-4_all.deb 70b5680d0b0b207db982ad07bf03df60 21603 science optional coot_1.1.09+dfsg-4_arm64.buildinfo 1dc865279b18aa7a9b3bb4e0aaf95520 7779092 science optional coot_1.1.09+dfsg-4_arm64.deb 953903ef2dba649b21f2bf83a7c436c1 82160 libdevel optional libcootapi-dev_1.1.09+dfsg-4_arm64.deb 7e48040e4e250276fb14191dca0fdef0 84581036 debug optional libcootapi1.1-dbgsym_1.1.09+dfsg-4_arm64.deb 6f123bdb4e32cfbfe43ed073aa3b92a2 3214496 libs optional libcootapi1.1_1.1.09+dfsg-4_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/coot_1.1.09+dfsg-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/coot_1.1.09+dfsg-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/coot_1.1.09+dfsg-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/coot_1.1.09+dfsg-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/dbd/unstable/arm64/coot_1.1.09+dfsg-3.diffoscope.html' removed '/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/arm64/coot_1.1.09+dfsg-3.diffoscope.txt.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/dbdjson/unstable/arm64/coot_1.1.09+dfsg-3.diffoscope.json.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/coot_1.1.09+dfsg-3_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/coot_1.1.09+dfsg-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-01-22 19:06:28.518174862 +0000 +++ b2/build.log 2025-01-22 19:36:43.964320848 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jan 22 06:34:09 -12 2025 -I: pbuilder-time-stamp: 1737570849 +I: Current time: Wed Feb 25 15:32:10 +14 2026 +I: pbuilder-time-stamp: 1771983130 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying SyntaxWarning.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2425547/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/307709/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 25 01:32 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/307709/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/307709/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='d5fb6b930a154750a0b54ebba3f12a85' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2425547' - PS1='# ' - PS2='> ' + INVOCATION_ID=70a8e56d45f543eeb5c7d4a46fc0a5fe + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=307709 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/pbuilderrc_GRwE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b1 --logfile b1/build.log coot_1.1.09+dfsg-4.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/pbuilderrc_ccyG --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b2 --logfile b2/build.log coot_1.1.09+dfsg-4.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2425547/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/307709/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -696,7 +728,7 @@ Get: 501 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 502 http://deb.debian.org/debian unstable/main arm64 sharutils arm64 1:4.15.2-10 [260 kB] Get: 503 http://deb.debian.org/debian unstable/main arm64 swig arm64 4.3.0-0.1 [1406 kB] -Fetched 298 MB in 3s (96.8 MB/s) +Fetched 298 MB in 2s (127 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -2313,8 +2345,8 @@ Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Jan 22 18:35:48 UTC 2025. -Universal Time is now: Wed Jan 22 18:35:48 UTC 2025. +Local time is now: Wed Feb 25 01:34:55 UTC 2026. +Universal Time is now: Wed Feb 25 01:34:55 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:arm64 (1.83.0-4) ... @@ -2796,7 +2828,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/coot-1.1.09+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../coot_1.1.09+dfsg-4_source.changes +I: user script /srv/workspace/pbuilder/307709/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/307709/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/coot-1.1.09+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../coot_1.1.09+dfsg-4_source.changes dpkg-buildpackage: info: source package coot dpkg-buildpackage: info: source version 1.1.09+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -3112,7 +3148,7 @@ -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams system python regex thread serialization -- Found Python: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3.10") found components: Interpreter Development.Module Development.SABIModule -- Note: MAKE_ENHANCED_LIGAND_TOOLS was not enabled --- Configuring done (4.3s) +-- Configuring done (4.0s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -3174,11 +3210,11 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' Making all in compat make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o getopt.lo getopt.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o getopt1.lo getopt1.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o getopt.lo getopt.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o getopt1.lo getopt1.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c getopt1.cc -fPIC -DPIC -o .libs/getopt1.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c getopt.cc -fPIC -DPIC -o .libs/getopt.o -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-compat.la -rpath /usr/lib/aarch64-linux-gnu getopt.lo getopt1.lo +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-compat.la -rpath /usr/lib/aarch64-linux-gnu getopt.lo getopt1.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/getopt.o .libs/getopt1.o -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-compat.so.0 -o .libs/libcoot-compat.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-compat.so.0" && ln -s "libcoot-compat.so.0.0.0" "libcoot-compat.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-compat.so" && ln -s "libcoot-compat.so.0.0.0" "libcoot-compat.so") @@ -3186,81 +3222,81 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' Making all in utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 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-Wall -Wno-unused -std=c++17 -c align-utils.cc -fPIC -DPIC -o .libs/align-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c base64-encode-decode.cc -fPIC -DPIC -o .libs/base64-encode-decode.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c win-compat.cc -fPIC -DPIC -o .libs/win-compat.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c threads.cc -fPIC -DPIC -o .libs/threads.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c align-utils.cc -fPIC -DPIC -o .libs/align-utils.o -In file included from atomic-numbers.cc:22: +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atomic-numbers.cc -fPIC -DPIC -o .libs/atomic-numbers.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dodec.cc -fPIC -DPIC -o .libs/dodec.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gdk-keysyms.cc -fPIC -DPIC -o .libs/gdk-keysyms.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c base64-encode-decode.cc -fPIC -DPIC -o .libs/base64-encode-decode.o +In file included from coot-fasta.cc:25: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from gdk-keysyms.cc:23: +In file included from setup-syminfo.cc:27: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from setup-syminfo.cc:27: +In file included from threads.cc:27: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o split-indices.lo split-indices.cc -In file included from pir-alignment.cc:28: +In file included from hsv-rgb.cc:29: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from hsv-rgb.cc:29: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o split-indices.lo split-indices.cc +In file included from gdk-keysyms.cc:23: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o radix.lo radix.cc -In file included from coot-fasta.cc:25: +In file included from atomic-numbers.cc:22: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o logging.lo logging.cc -In file included from threads.cc:27: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o radix.lo radix.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o logging.lo logging.cc +In file included from pir-alignment.cc:28: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o insertion-sort.lo insertion-sort.cc In file included from coot-utils.cc:59: coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c logging.cc -fPIC -DPIC -o .libs/logging.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" 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-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c split-indices.cc -fPIC -DPIC -o .libs/split-indices.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c colour-holder.cc -fPIC -DPIC -o .libs/colour-holder.o -/bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-utils.lo coot-fasta.lo atomic-numbers.lo setup-syminfo.lo gdk-keysyms.lo hsv-rgb.lo dodec.lo win-compat.lo threads.lo align-utils.lo base64-encode-decode.lo pir-alignment.lo split-indices.lo radix.lo logging.lo insertion-sort.lo colour-holder.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -ldw -lelf +/bin/sh ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-utils.lo coot-fasta.lo atomic-numbers.lo setup-syminfo.lo gdk-keysyms.lo hsv-rgb.lo dodec.lo win-compat.lo threads.lo align-utils.lo base64-encode-decode.lo pir-alignment.lo split-indices.lo radix.lo logging.lo insertion-sort.lo colour-holder.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -ldw -lelf libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-utils.o .libs/coot-fasta.o .libs/atomic-numbers.o .libs/setup-syminfo.o .libs/gdk-keysyms.o .libs/hsv-rgb.o .libs/dodec.o .libs/win-compat.o .libs/threads.o .libs/align-utils.o .libs/base64-encode-decode.o .libs/pir-alignment.o .libs/split-indices.o .libs/radix.o .libs/logging.o .libs/insertion-sort.o .libs/colour-holder.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -ldw -lelf -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-utils.so.0 -o .libs/libcoot-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-utils.so.0" && ln -s "libcoot-utils.so.0.0.0" "libcoot-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-utils.so" && ln -s "libcoot-utils.so.0.0.0" "libcoot-utils.so") @@ -3268,13 +3304,13 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' Making all in protein_db make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db.lo protein_db.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. 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-DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rna_db.lo rna_db.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db.lo protein_db.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db_utils.lo protein_db_utils.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rna_db.lo rna_db.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db.cpp -fPIC -DPIC -o .libs/protein_db.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rna_db.cpp -fPIC -DPIC -o .libs/rna_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db_utils.cpp -fPIC -DPIC -o .libs/protein_db_utils.o -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-protein-db.la -rpath /usr/lib/aarch64-linux-gnu protein_db.lo protein_db_utils.lo rna_db.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rna_db.cpp -fPIC -DPIC -o .libs/rna_db.o +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-protein-db.la -rpath /usr/lib/aarch64-linux-gnu protein_db.lo protein_db_utils.lo rna_db.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/protein_db.o .libs/protein_db_utils.o .libs/rna_db.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-protein-db.so.0 -o .libs/libcoot-protein-db.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-protein-db.so.0" && ln -s "libcoot-protein-db.so.0.0.0" "libcoot-protein-db.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-protein-db.so" && ln -s "libcoot-protein-db.so.0.0.0" "libcoot-protein-db.so") @@ -3282,21 +3318,21 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' Making all in mini-mol make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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-Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-mol.lo mini-mol.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-mol-utils.lo mini-mol-utils.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-quads.lo atom-quads.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-quads.cc -fPIC -DPIC -o .libs/atom-quads.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-mol.cc -fPIC -DPIC -o .libs/mini-mol.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-mol-utils.cc -fPIC -DPIC -o .libs/mini-mol-utils.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-mol.cc -fPIC -DPIC -o .libs/mini-mol.o In file included from mini-mol.hh:29, - from mini-mol.cc:26: + from mini-mol-utils.hh:22, + from mini-mol-utils.cc:22: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from mini-mol.hh:29, - from mini-mol-utils.hh:22, - from mini-mol-utils.cc:22: + from mini-mol.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -3305,7 +3341,7 @@ mini-mol.cc:1654:36: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1654 | coot::minimol::molecule::get_pos() const { | ^~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/aarch64-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/aarch64-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-mini-mol.so.0 -o .libs/libcoot-mini-mol.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so.0" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so") @@ -3313,123 +3349,123 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' Making all in geometry make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cif-parse.lo cif-parse.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o energy-lib.lo energy-lib.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" 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-DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse.cc -fPIC -DPIC -o .libs/cif-parse.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dict-utils.cc -fPIC -DPIC -o .libs/dict-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c glyco-tools.cc -fPIC -DPIC -o .libs/glyco-tools.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dictionary-residue.cc -fPIC -DPIC -o .libs/dictionary-residue.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c srs-interface.cc -fPIC -DPIC -o .libs/srs-interface.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c energy-lib.cc -fPIC -DPIC -o .libs/energy-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chem_mods.cc -fPIC -DPIC -o .libs/chem_mods.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-geometry.cc -fPIC -DPIC -o .libs/protein-geometry.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c link.cc -fPIC -DPIC -o .libs/link.o In file included from srs-interface.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from dict-utils.cc:26: +In file included from energy-lib.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-donor-acceptors.lo protein-donor-acceptors.cc -In file included from energy-lib.cc:29: +In file included from read-sbase.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from read-sbase.cc:28: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-donor-acceptors.lo protein-donor-acceptors.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-donor-acceptors.cc -fPIC -DPIC -o .libs/protein-donor-acceptors.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-graph.lo lbg-graph.cc +In file included from dict-utils.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from link.cc:35: +In file included from dictionary-residue.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-graph.lo lbg-graph.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-donor-acceptors.cc -fPIC -DPIC -o .libs/protein-donor-acceptors.o In file included from protein-geometry.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-graph.cc -fPIC -DPIC -o .libs/lbg-graph.o -In file included from chem_mods.cc:28: +In file included from glyco-tools.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-graph.cc -fPIC -DPIC -o .libs/lbg-graph.o In file included from cif-parse.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from glyco-tools.cc:35: +In file included from chem_mods.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from dictionary-residue.cc:35: +In file included from link.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dreiding.lo dreiding.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dreiding.lo dreiding.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main-chain.lo main-chain.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o residue-and-atom-specs.lo residue-and-atom-specs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dreiding.cc -fPIC -DPIC -o .libs/dreiding.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main-chain.lo main-chain.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c main-chain.cc -fPIC -DPIC -o .libs/main-chain.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o residue-and-atom-specs.lo residue-and-atom-specs.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o intercept-3GP.lo intercept-3GP.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-and-atom-specs.cc -fPIC -DPIC -o .libs/residue-and-atom-specs.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c intercept-3GP.cc -fPIC -DPIC -o .libs/intercept-3GP.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o intercept-3GP.lo intercept-3GP.cc In file included from residue-and-atom-specs.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 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-DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse-link.cc -fPIC -DPIC -o .libs/cif-parse-link.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c hydrophobic.cc -fPIC -DPIC -o .libs/hydrophobic.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-metals-json.lo read-metals-json.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cif-parse-mon-lib.cc -fPIC -DPIC -o .libs/cif-parse-mon-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-metals-json.cc -fPIC -DPIC -o .libs/read-metals-json.o -In file included from cif-parse-mon-lib.cc:25: +In file included from cif-parse-link.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from read-metals-json.cc:28: +In file included from cif-parse-mon-lib.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from cif-parse-link.cc:33: +In file included from read-metals-json.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=link g++ -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/aarch64-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/aarch64-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/cif-parse.o .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/mol-utils.o .libs/dictionary-residue.o .libs/link.o .libs/glyco-tools.o .libs/dict-utils.o .libs/chem_mods.o .libs/srs-interface.o .libs/protein-donor-acceptors.o .libs/lbg-graph.o .libs/dreiding.o .libs/main-chain.o .libs/residue-and-atom-specs.o .libs/intercept-3GP.o .libs/mol-utils-2.o .libs/hydrophobic.o .libs/cif-parse-link.o .libs/cif-parse-mon-lib.o .libs/read-metals-json.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/compat/.libs ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so.0" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so") @@ -3437,59 +3473,59 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' Making all in lidia-core make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-shared.lo lbg-shared.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 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-DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lig-build.cc -fPIC -DPIC -o .libs/lig-build.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-atom-type-t.cc -fPIC -DPIC -o .libs/cod-atom-type-t.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-types.cc -fPIC -DPIC -o .libs/cod-types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cod-atom-types.cc -fPIC -DPIC -o .libs/cod-atom-types.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-types.cc -fPIC -DPIC -o .libs/atom-types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-residue.cc -fPIC -DPIC -o .libs/get-residue.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bond-record-container-t.cc -fPIC -DPIC -o .libs/bond-record-container-t.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rdkit-interface.cc -fPIC -DPIC -o .libs/rdkit-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chemical-feature-clusters.cc -fPIC -DPIC -o .libs/chemical-feature-clusters.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-shared.cc -fPIC -DPIC -o .libs/lbg-shared.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bond-table-record-t.cc -fPIC -DPIC -o .libs/bond-table-record-t.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o svg-molecule.lo svg-molecule.cc In file included from lig-build.cc:25: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c svg-molecule.cc -fPIC -DPIC -o .libs/svg-molecule.o -In file included from atom-types.cc:29: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o svg-molecule.lo svg-molecule.cc In file included from lbg-molfile.hh:32, from lbg-molfile.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from cod-types.cc:26: +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c svg-molecule.cc -fPIC -DPIC -o .libs/svg-molecule.o +In file included from atom-types.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from rdkit-interface.cc:26: +In file included from chemical-feature-clusters.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from chemical-feature-clusters.cc:31: +In file included from cod-types.cc:26: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from rdkit-interface.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -3502,21 +3538,14 @@ | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, - from atom-types.cc:30: -lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from lbg-molfile.hh:32, - from rdkit-interface.hh:29, - from cod-atom-types.cc:28: + from chemical-feature-clusters.cc:33: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, - from cod-types.cc:27: + from rdkit-interface.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -3528,11 +3557,6 @@ lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from cod-atom-types.cc:33: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, from cod-atom-type-t.cc:28: @@ -3542,29 +3566,41 @@ | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, - from chemical-feature-clusters.cc:33: + from cod-types.cc:27: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from bond-record-container-t.cc:33: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from lbg-molfile.hh:32, from rdkit-interface.hh:29, - from rdkit-interface.cc:27: + from atom-types.cc:30: lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from bond-record-container-t.cc:33: +In file included from cod-atom-type-t.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from cod-atom-type-t.cc:33: +In file included from lbg-molfile.hh:32, + from rdkit-interface.hh:29, + from cod-atom-types.cc:28: +lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from cod-atom-types.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/aarch64-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/aarch64-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/lbg-shared.o .libs/lbg-molfile.o .libs/lig-build.o .libs/rdkit-interface.o .libs/cod-types.o .libs/atom-types.o .libs/bond-record-container-t.o .libs/cod-atom-type-t.o .libs/cod-atom-types.o .libs/bond-table-record-t.o .libs/chemical-feature-clusters.o .libs/get-residue.o .libs/svg-molecule.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-lidia-core.so.0 -o .libs/libcoot-lidia-core.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so.0" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so") @@ -3573,92 +3609,96 @@ Making all in coot-utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mmrrcc.o mmrrcc.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" 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-DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c xmap-stats.cc -fPIC -DPIC -o .libs/xmap-stats.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c peak-search.cc -fPIC -DPIC -o .libs/peak-search.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c slurp-map.cc -fPIC -DPIC -o .libs/slurp-map.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pepflip-using-difference-map.cc -fPIC -DPIC -o .libs/pepflip-using-difference-map.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-map-utils.cc -fPIC -DPIC -o .libs/coot-map-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c blob-line.cc -fPIC -DPIC -o .libs/blob-line.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c maps-spherical.cc -fPIC -DPIC -o .libs/maps-spherical.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c exp-fit.cc -fPIC -DPIC -o .libs/exp-fit.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trim.cc -fPIC -DPIC -o .libs/trim.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c find-water-baddies.cc -fPIC -DPIC -o .libs/find-water-baddies.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trim.cc -fPIC -DPIC -o .libs/trim.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c exp-fit.cc -fPIC -DPIC -o .libs/exp-fit.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c maps-spherical.cc -fPIC -DPIC -o .libs/maps-spherical.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pepflip-using-difference-map.cc -fPIC -DPIC -o .libs/pepflip-using-difference-map.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c peak-search.cc -fPIC -DPIC -o .libs/peak-search.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c slurp-map.cc -fPIC -DPIC -o .libs/slurp-map.o In file included from mmrrcc.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from pepflip-using-difference-map.cc:28: -../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': -../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 139 | std::pair median_and_iqr() const { - | ^ +In file included from coot-map-utils.hh:33, + from trim.cc:21: +coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from maps-spherical.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o diff-diff-map-peaks.lo diff-diff-map-peaks.cc +In file included from pepflip-using-difference-map.cc:28: +../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': +../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 139 | std::pair median_and_iqr() const { + | ^ In file included from coot-map-utils.hh:33, from blob-line.cc:27: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o diff-diff-map-peaks.lo diff-diff-map-peaks.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-texture.lo mini-texture.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o positron.lo positron.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c diff-diff-map-peaks.cc -fPIC -DPIC -o .libs/diff-diff-map-peaks.o In file included from coot-map-utils.hh:33, - from trim.cc:21: + from find-water-baddies.cc:29: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from coot-map-utils.cc:39: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o texture-as-floats.lo texture-as-floats.cc +In file included from slurp-map.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from coot-map-utils.hh:33, - from find-water-baddies.cc:29: -coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c diff-diff-map-peaks.cc -fPIC -DPIC -o .libs/diff-diff-map-peaks.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-texture.lo mini-texture.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o positron.lo positron.cc -In file included from slurp-map.cc:26: +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-texture.cc -fPIC -DPIC -o .libs/mini-texture.o +In file included from coot-map-utils.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o texture-as-floats.lo texture-as-floats.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c positron.cc -fPIC -DPIC -o .libs/positron.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils.lo coot-coord-utils.cc coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': coot-map-utils.cc:973:63: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils.lo coot-coord-utils.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils-nucleotides.lo coot-coord-utils-nucleotides.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mini-texture.cc -fPIC -DPIC -o .libs/mini-texture.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c positron.cc -fPIC -DPIC -o .libs/positron.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c texture-as-floats.cc -fPIC -DPIC -o .libs/texture-as-floats.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils-nucleotides.lo coot-coord-utils-nucleotides.cc In file included from coot-map-utils.cc:3842: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c texture-as-floats.cc -fPIC -DPIC -o .libs/texture-as-floats.o +In file included from positron.cc:32: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils.cc -fPIC -DPIC -o .libs/coot-coord-utils.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils-nucleotides.cc -fPIC -DPIC -o .libs/coot-coord-utils-nucleotides.o In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/core/hkl_compute.h:48, from coot-map-utils.cc:32: @@ -3669,6 +3709,13 @@ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-rama.lo coot-rama.cc +In file included from ../coot-utils/coot-map-utils.hh:33, + from mini-texture.cc:28: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/algorithm:60, from coot-map-utils.cc:23: @@ -3693,89 +3740,73 @@ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ -In file included from positron.cc:32: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-rama.lo coot-rama.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-coord-utils-nucleotides.cc -fPIC -DPIC -o .libs/coot-coord-utils-nucleotides.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-h-bonds.lo coot-h-bonds.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o hole.lo hole.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-sm-cif.lo read-sm-cif.cc In file included from coot-coord-utils.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-rama.cc -fPIC -DPIC -o .libs/coot-rama.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c hole.cc -fPIC -DPIC -o .libs/hole.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-sm-cif.cc -fPIC -DPIC -o .libs/read-sm-cif.o In file included from coot-coord-utils-nucleotides.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from mini-texture.cc:28: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-h-bonds.lo coot-h-bonds.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-rama.cc -fPIC -DPIC -o .libs/coot-rama.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o hole.lo hole.cc In file included from coot-map-utils.hh:33, from texture-as-floats.cc:27: coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-h-bonds.cc -fPIC -DPIC -o .libs/coot-h-bonds.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bonded-pairs.lo bonded-pairs.cc In file included from coot-rama.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-sm-cif.lo read-sm-cif.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c hole.cc -fPIC -DPIC -o .libs/hole.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bonded-pairs.lo bonded-pairs.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o helix-analysis.lo helix-analysis.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-h-bonds.cc -fPIC -DPIC -o .libs/coot-h-bonds.o /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o helix-analysis.lo helix-analysis.cc coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': coot-map-utils.cc:973:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bonded-pairs.cc -fPIC -DPIC -o .libs/bonded-pairs.o +In file included from hole.cc:28: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ coot-map-utils.cc: In lambda function: coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-sm-cif.cc -fPIC -DPIC -o .libs/read-sm-cif.o coot-map-utils.cc: In function 'void coot::util::reverse_map(clipper::Xmap*)': coot-map-utils.cc:4713:55: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4713 | std::pair mv = mean_and_variance(xmap); | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bonded-pairs.cc -fPIC -DPIC -o .libs/bonded-pairs.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o elastic.lo elastic.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o elastic.lo elastic.cc -In file included from hole.cc:28: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c elastic.cc -fPIC -DPIC -o .libs/elastic.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glyco-torsions.lo glyco-torsions.cc hole.cc: In member function 'std::pair coot::hole::optimize_point(const clipper::Coord_orth&, int)': hole.cc:253:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 253 | coot::hole::optimize_point(const clipper::Coord_orth &pt, int selhnd) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c elastic.cc -fPIC -DPIC -o .libs/elastic.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o glyco-torsions.lo glyco-torsions.cc In file included from read-sm-cif.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-least-squares.lo coot-least-squares.cc -In file included from elastic.cc:30: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-least-squares.lo coot-least-squares.cc In file included from /usr/include/clipper/core/clipper_instance.h:49, from read-sm-cif.cc:32: /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': @@ -3785,25 +3816,31 @@ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c glyco-torsions.cc -fPIC -DPIC -o .libs/glyco-torsions.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-least-squares.cc -fPIC -DPIC -o .libs/coot-least-squares.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-overlaps.lo atom-overlaps.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o reduce.lo reduce.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom-selection-container.lo atom-selection-container.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-overlaps.cc -fPIC -DPIC -o .libs/atom-overlaps.o -In file included from glyco-torsions.cc:43: +In file included from elastic.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include 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atom-selection-container.cc -fPIC -DPIC -o .libs/atom-selection-container.o coot-map-utils.cc: In lambda function: coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" 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-DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-shelx-ins.lo coot-shelx-ins.cc +In file included from glyco-torsions.cc:43: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c contact-info.cc -fPIC -DPIC -o .libs/contact-info.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-shelx-ins.lo coot-shelx-ins.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-selection-container.cc -fPIC -DPIC -o .libs/atom-selection-container.o coot-map-utils.cc: In lambda function: coot-map-utils.cc:4501:87: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4501 | (*f_data_hkl_accum_p)[chkl][imap] = std::make_pair(fphis[hri].f(), fphis[hri].phi()); @@ -3813,13 +3850,14 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c contact-info.cc -fPIC -DPIC -o .libs/contact-info.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-shelx-ins.cc -fPIC -DPIC -o .libs/coot-shelx-ins.o In file included from reduce.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o secondary-structure-headers.lo secondary-structure-headers.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c secondary-structure-headers.cc -fPIC -DPIC -o .libs/secondary-structure-headers.o In file included from atom-selection-container.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -3830,78 +3868,82 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o secondary-structure-headers.lo secondary-structure-headers.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o plane-utils.lo plane-utils.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o plane-utils.lo plane-utils.cc In file included from atom-selection-container.cc:33: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c secondary-structure-headers.cc -fPIC -DPIC -o .libs/secondary-structure-headers.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 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atom-selection-container.cc:915: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. 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-DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c merge-atom-selections.cc -fPIC -DPIC -o .libs/merge-atom-selections.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c contacts-by-bricks.cc -fPIC -DPIC -o .libs/contacts-by-bricks.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o stack-and-pair.lo stack-and-pair.cc -In file included from merge-atom-selections.cc:34: +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../lidia-core/rdkit-interface.hh:29, + from lidia-core-functions.cc:29: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from contacts-by-bricks.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c stack-and-pair.cc -fPIC -DPIC -o .libs/stack-and-pair.o -In file included from contacts-by-bricks.cc:31: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o stack-and-pair.lo stack-and-pair.cc +In file included from merge-atom-selections.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fast-eigens.lo fast-eigens.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fast-eigens.lo fast-eigens.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c stack-and-pair.cc -fPIC -DPIC -o .libs/stack-and-pair.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o strand-fragments.lo strand-fragments.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fast-eigens.cc -fPIC -DPIC -o .libs/fast-eigens.o -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../lidia-core/rdkit-interface.hh:29, - from lidia-core-functions.cc:29: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 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-DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o shiftfield.lo shiftfield.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_shiftfield.cpp -fPIC -DPIC -o .libs/coot_shiftfield.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c shiftfield.cpp -fPIC -DPIC -o .libs/shiftfield.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fib-sphere.lo fib-sphere.cc coot-map-utils.cc: In function 'bool coot::util::map_fill_from_mtz(clipper::Xmap*, std::string, std::string, std::string, std::string, short int, float, short int, float)': coot-map-utils.cc:59:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 59 | coot::util::map_fill_from_mtz(clipper::Xmap *xmap, | ^~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c shiftfield.cpp -fPIC -DPIC -o .libs/shiftfield.o In file included from cablam-markup.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o polar-atoms.lo polar-atoms.cc +In file included from /usr/include/clipper/core/container_hkl.h:50, + from /usr/include/clipper/clipper.h:7, + from sfcalc-genmap.cc:30: +/usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_abcd_from_phifom; T = clipper::datatypes::ABCD]': +/usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::ABCD' when C++17 is enabled changed to match C++14 in GCC 10.1 + 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } + | ^~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fib-sphere.lo fib-sphere.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from coot_shiftfield.h:31, @@ -3920,129 +3962,123 @@ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fib-sphere.cc -fPIC -DPIC -o .libs/fib-sphere.o +In file included from /usr/include/clipper/core/container_hkl.h:50, + from /usr/include/clipper/clipper.h:7, + from shiftfield.h:31, + from shiftfield.cpp:27: +/usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::F_phi; C = clipper::datatypes::Compute_scale_u_aniso >; T = clipper::datatypes::F_phi]': +/usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 + 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } + | ^~~~ coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': coot_shiftfield.cpp:153:67: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; coot_shiftfield.cpp:209:16: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fib-sphere.cc -fPIC -DPIC -o .libs/fib-sphere.o /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o polar-atoms.lo polar-atoms.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o 3d-texture.lo 3d-texture.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c polar-atoms.cc -fPIC -DPIC -o .libs/polar-atoms.o -In file included from /usr/include/clipper/core/container_hkl.h:50, - from /usr/include/clipper/clipper.h:7, - from shiftfield.h:31, - from shiftfield.cpp:27: -/usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::F_phi; C = clipper::datatypes::Compute_scale_u_aniso >; T = clipper::datatypes::F_phi]': -/usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 - 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } - | ^~~~ -In file included from /usr/include/clipper/core/container_hkl.h:50, - from /usr/include/clipper/clipper.h:7, - from sfcalc-genmap.cc:30: -/usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const C&) [with S = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_abcd_from_phifom; T = clipper::datatypes::ABCD]': -/usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::ABCD' when C++17 is enabled changed to match C++14 in GCC 10.1 - 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } - | ^~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o 3d-texture.lo 3d-texture.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o merge-molecules.lo merge-molecules.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fragment-container.lo fragment-container.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c 3d-texture.cc -fPIC -DPIC -o .libs/3d-texture.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o merge-molecules.lo merge-molecules.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fragment-container.cc -fPIC -DPIC -o .libs/fragment-container.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mutate.lo mutate.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c merge-molecules.cc -fPIC -DPIC -o .libs/merge-molecules.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o merge-C-and-N-terminii.lo merge-C-and-N-terminii.cc /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o prideout-octasphere.lo prideout-octasphere.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo 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-DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-mesh.lo simple-mesh.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cylinder-with-rotation-translation.cc -fPIC -DPIC -o .libs/cylinder-with-rotation-translation.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o shapes.lo shapes.cc coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 121 | coot::shift_field_b_factor_refinement(const clipper::HKL_data< clipper::datatypes::F_sigF > &fo0, | ^~~~ coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mutate.cc -fPIC -DPIC -o .libs/mutate.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c oct.cc -fPIC -DPIC -o .libs/oct.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c prideout-octasphere.cc -fPIC -DPIC -o .libs/prideout-octasphere.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-mesh.cc -fPIC -DPIC -o .libs/simple-mesh.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c shapes.cc -fPIC -DPIC -o .libs/shapes.o coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 coot_shiftfield.cpp:209:29: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c merge-C-and-N-terminii.cc -fPIC -DPIC -o .libs/merge-C-and-N-terminii.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cylinder.lo cylinder.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from coot-tree-extras.cc:28: +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. 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../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from coot-coord-lsq.cc:23: +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lsq-improve.cc -fPIC -DPIC -o .libs/lsq-improve.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-coord-utils-glyco.lo coot-coord-utils-glyco.cc +In file included from coot-tree-extras.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o jed-flip.lo jed-flip.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-map-heavy.lo coot-map-heavy.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c jed-flip.cc -fPIC -DPIC -o .libs/jed-flip.o In file included from coot-coord-utils-glyco.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o jed-flip.lo jed-flip.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c jed-flip.cc -fPIC -DPIC -o .libs/jed-flip.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-map-heavy.lo coot-map-heavy.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-map-heavy.cc -fPIC -DPIC -o .libs/coot-map-heavy.o In file included from ../mini-mol/mini-mol.hh:29, from coot-coord-extras.hh:33, @@ -4052,17 +4088,16 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 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-DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o spherical-harmonics.lo spherical-harmonics.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o segmap.lo segmap.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-fffear.cc -fPIC -DPIC -o .libs/coot-fffear.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-fffear.lo coot-fffear.cc In file included from coot-map-heavy.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-fffear.cc -fPIC -DPIC -o .libs/coot-fffear.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o spherical-harmonics.lo spherical-harmonics.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c spherical-harmonics.cc -fPIC -DPIC -o .libs/spherical-harmonics.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c segmap.cc -fPIC -DPIC -o .libs/segmap.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o segmap.lo segmap.cc In file included from ../mini-mol/mini-mol.hh:29, from coot-map-heavy.hh:28, from coot-fffear.cc:33: @@ -4070,42 +4105,43 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c segmap.cc -fPIC -DPIC -o .libs/segmap.o coot-fffear.cc: In constructor 'coot::util::fffear_search::fffear_search(mmdb::Manager*, int, const clipper::Xmap&, float, bool)': coot-fffear.cc:159:70: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 159 | std::pair mv = coot::util::mean_and_variance(xmap); | ^ -/bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo glyco-torsions.lo coot-least-squares.lo atom-overlaps.lo reduce.lo atom-selection-container.lo contact-info.lo coot-shelx-ins.lo secondary-structure-headers.lo plane-utils.lo c-beta-deviations.lo lidia-core-functions.lo atom-tools.lo bonded-atoms.lo bricks.lo helix-like.lo merge-atom-selections.lo contacts-by-bricks.lo stack-and-pair.lo fast-eigens.lo strand-fragments.lo sfcalc-genmap.lo cablam-markup.lo coot_shiftfield.lo shiftfield.lo fib-sphere.lo polar-atoms.lo 3d-texture.lo merge-molecules.lo fragment-container.lo mutate.lo merge-C-and-N-terminii.lo cylinder.lo cylinder-with-rotation-translation.lo oct.lo prideout-octasphere.lo simple-mesh.lo shapes.lo cmtz-interface.lo pugixml.lo parse-pisa.lo gltf-export.lo pae.lo ../lidia-core/libcoot-lidia-core.la ../protein_db/libcoot-protein-db.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread +/bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo glyco-torsions.lo coot-least-squares.lo atom-overlaps.lo reduce.lo atom-selection-container.lo contact-info.lo coot-shelx-ins.lo secondary-structure-headers.lo plane-utils.lo c-beta-deviations.lo lidia-core-functions.lo atom-tools.lo bonded-atoms.lo bricks.lo helix-like.lo merge-atom-selections.lo contacts-by-bricks.lo stack-and-pair.lo fast-eigens.lo strand-fragments.lo sfcalc-genmap.lo cablam-markup.lo coot_shiftfield.lo shiftfield.lo fib-sphere.lo polar-atoms.lo 3d-texture.lo merge-molecules.lo fragment-container.lo mutate.lo merge-C-and-N-terminii.lo cylinder.lo cylinder-with-rotation-translation.lo oct.lo prideout-octasphere.lo simple-mesh.lo shapes.lo cmtz-interface.lo pugixml.lo parse-pisa.lo gltf-export.lo pae.lo ../lidia-core/libcoot-lidia-core.la ../protein_db/libcoot-protein-db.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-utils.o .libs/coot-coord-utils-nucleotides.o .libs/coot-rama.o .libs/coot-h-bonds.o .libs/hole.o .libs/read-sm-cif.o .libs/bonded-pairs.o .libs/helix-analysis.o .libs/elastic.o .libs/glyco-torsions.o .libs/coot-least-squares.o .libs/atom-overlaps.o .libs/reduce.o .libs/atom-selection-container.o .libs/contact-info.o .libs/coot-shelx-ins.o .libs/secondary-structure-headers.o .libs/plane-utils.o .libs/c-beta-deviations.o .libs/lidia-core-functions.o .libs/atom-tools.o .libs/bonded-atoms.o .libs/bricks.o .libs/helix-like.o .libs/merge-atom-selections.o .libs/contacts-by-bricks.o .libs/stack-and-pair.o .libs/fast-eigens.o .libs/strand-fragments.o .libs/sfcalc-genmap.o .libs/cablam-markup.o .libs/coot_shiftfield.o .libs/shiftfield.o .libs/fib-sphere.o .libs/polar-atoms.o .libs/3d-texture.o .libs/merge-molecules.o .libs/fragment-container.o .libs/mutate.o .libs/merge-C-and-N-terminii.o .libs/cylinder.o .libs/cylinder-with-rotation-translation.o .libs/oct.o .libs/prideout-octasphere.o .libs/simple-mesh.o .libs/shapes.o .libs/cmtz-interface.o .libs/pugixml.o .libs/parse-pisa.o .libs/gltf-export.o .libs/pae.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/protein_db/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs ../lidia-core/.libs/libcoot-lidia-core.so ../protein_db/.libs/libcoot-protein-db.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-utils.so.0 -o .libs/libcoot-coord-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-coord-utils.so.0" && ln -s "libcoot-coord-utils.so.0.0.0" "libcoot-coord-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coord-utils.so" && ln -s "libcoot-coord-utils.so.0.0.0" "libcoot-coord-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coord-utils.la" && ln -s "../libcoot-coord-utils.la" "libcoot-coord-utils.la" ) -/bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-map-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo pepflip-using-difference-map.lo exp-fit.lo blob-line.lo slurp-map.lo find-water-baddies.lo diff-diff-map-peaks.lo mini-texture.lo positron.lo texture-as-floats.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -lz -/bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-extras.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo jed-flip.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-map-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo pepflip-using-difference-map.lo exp-fit.lo blob-line.lo slurp-map.lo find-water-baddies.lo diff-diff-map-peaks.lo mini-texture.lo positron.lo texture-as-floats.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -lz +/bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-extras.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo jed-flip.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-extras.o .libs/coot-coord-lsq.o .libs/coot-tree-extras.o .libs/water-coordination.o .libs/lsq-improve.o .libs/coot-coord-utils-glyco.o .libs/jed-flip.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-extras.so.0 -o .libs/libcoot-coord-extras.so.0.0.0 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-utils.o .libs/peak-search.o .libs/peak-search-from-list.o .libs/trim.o .libs/xmap-stats.o .libs/maps-spherical.o .libs/pepflip-using-difference-map.o .libs/exp-fit.o .libs/blob-line.o .libs/slurp-map.o .libs/find-water-baddies.o .libs/diff-diff-map-peaks.o .libs/mini-texture.o .libs/positron.o .libs/texture-as-floats.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -lz -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-utils.so.0 -o .libs/libcoot-map-utils.so.0.0.0 -libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so.0" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so.0") -libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so") libtool: link: (cd ".libs" && rm -f "libcoot-coord-extras.so.0" && ln -s "libcoot-coord-extras.so.0.0.0" "libcoot-coord-extras.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coord-extras.so" && ln -s "libcoot-coord-extras.so.0.0.0" "libcoot-coord-extras.so") +libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so.0" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so.0") +libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-coord-extras.la" && ln -s "../libcoot-coord-extras.la" "libcoot-coord-extras.la" ) libtool: link: ( cd ".libs" && rm -f "libcoot-map-utils.la" && ln -s "../libcoot-map-utils.la" "libcoot-map-utils.la" ) -/bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-mmrrcc mmrrcc.o ./libcoot-map-utils.la ./libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-map-heavy.la -rpath /usr/lib/aarch64-linux-gnu coot-map-heavy.lo coot-fffear.lo spherical-harmonics.lo segmap.lo libcoot-map-utils.la libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread +/bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-map-heavy.la -rpath /usr/lib/aarch64-linux-gnu coot-map-heavy.lo coot-fffear.lo spherical-harmonics.lo segmap.lo libcoot-map-utils.la libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread +/bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-mmrrcc mmrrcc.o ./libcoot-map-utils.la ./libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-heavy.o .libs/coot-fffear.o .libs/spherical-harmonics.o .libs/segmap.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-map-utils.so ./.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-heavy.so.0 -o .libs/libcoot-map-heavy.so.0.0.0 +libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-mmrrcc mmrrcc.o ./.libs/libcoot-map-utils.so ./.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so.0" && ln -s "libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so" && ln -s "libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so") -libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-mmrrcc mmrrcc.o ./.libs/libcoot-map-utils.so ./.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: ( cd ".libs" && rm -f "libcoot-map-heavy.la" && ln -s "../libcoot-map-heavy.la" "libcoot-map-heavy.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' Making all in angles make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo.lo `test -f 'AngleInfo.cc' || echo './'`AngleInfo.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo `test -f 'AngleInfo-angle-torsions-autogen.cc' || echo './'`AngleInfo-angle-torsions-autogen.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo `test -f 'AngleInfo-theta_2-autogen.cc' || echo './'`AngleInfo-theta_2-autogen.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo.lo `test -f 'AngleInfo.cc' || echo './'`AngleInfo.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo `test -f 'AngleInfo-angle-torsions-autogen.cc' || echo './'`AngleInfo-angle-torsions-autogen.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo `test -f 'AngleInfo-theta_2-autogen.cc' || echo './'`AngleInfo-theta_2-autogen.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo-theta_2-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo-angle-torsions-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-AngleInfo.la -rpath /usr/lib/aarch64-linux-gnu libcoot_AngleInfo_la-AngleInfo.lo libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AngleInfo-theta_2-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-AngleInfo.la -rpath /usr/lib/aarch64-linux-gnu libcoot_AngleInfo_la-AngleInfo.lo libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-AngleInfo.so.0 -o .libs/libcoot-AngleInfo.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-AngleInfo.so.0" && ln -s "libcoot-AngleInfo.so.0.0.0" "libcoot-AngleInfo.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-AngleInfo.so" && ln -s "libcoot-AngleInfo.so.0.0.0" "libcoot-AngleInfo.so") @@ -4113,19 +4149,19 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' Making all in ccp4mg-utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o geomutil.lo geomutil.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" 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-Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o quat.lo quat.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ppmutil.lo ppmutil.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c matrix.cc -fPIC -DPIC -o .libs/matrix.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c geomutil.cc -fPIC -DPIC -o .libs/geomutil.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cartesian.cc -fPIC -DPIC -o .libs/cartesian.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c quat.cc -fPIC -DPIC -o .libs/quat.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ppmutil.cc -fPIC -DPIC -o .libs/ppmutil.o -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libccp4mg-utils.la -rpath /usr/lib/aarch64-linux-gnu geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo -lpng16 +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mgtree.cc -fPIC -DPIC -o .libs/mgtree.o +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libccp4mg-utils.la -rpath /usr/lib/aarch64-linux-gnu geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo -lpng16 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/geomutil.o .libs/mgtree.o .libs/cartesian.o .libs/matrix.o .libs/quat.o .libs/ppmutil.o -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4mg-utils.so.0 -o .libs/libccp4mg-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libccp4mg-utils.so.0" && ln -s "libccp4mg-utils.so.0.0.0" "libccp4mg-utils.so.0") libtool: link: (cd ".libs" && rm -f "libccp4mg-utils.so" && ln -s "libccp4mg-utils.so.0.0.0" "libccp4mg-utils.so") @@ -4133,10 +4169,10 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' Making all in db-main make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o db-main.lo db-main.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o db-strands.lo db-strands.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c db-main.cc -fPIC -DPIC -o .libs/db-main.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o db-main.lo db-main.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o db-strands.lo db-strands.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c db-strands.cc -fPIC -DPIC -o .libs/db-strands.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c db-main.cc -fPIC -DPIC -o .libs/db-main.o In file included from db-main.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -4147,7 +4183,7 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-db-main.la -rpath /usr/lib/aarch64-linux-gnu db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-db-main.la -rpath /usr/lib/aarch64-linux-gnu db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/db-main.o .libs/db-strands.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../mini-mol/.libs/libcoot-mini-mol.so ../lidia-core/.libs/libcoot-lidia-core.so ../coot-utils/.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-db-main.so.0 -o .libs/libcoot-db-main.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-db-main.so.0" && ln -s "libcoot-db-main.so.0.0.0" "libcoot-db-main.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-db-main.so" && ln -s "libcoot-db-main.so.0.0.0" "libcoot-db-main.so") @@ -4156,24 +4192,24 @@ Making all in analysis make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bfactan.o bfactan.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o bfkurt.lo bfkurt.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mogul.lo mogul.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o kolmogorov.lo kolmogorov.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o stats.lo stats.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cablam.lo cablam.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o typed-distances.lo typed-distances.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o b-factor-histogram.lo b-factor-histogram.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o daca.lo daca.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rna-backbone.lo rna-backbone.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c daca.cc -fPIC -DPIC -o .libs/daca.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c typed-distances.cc -fPIC -DPIC -o .libs/typed-distances.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cablam.cc -fPIC -DPIC -o .libs/cablam.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c b-factor-histogram.cc -fPIC -DPIC -o .libs/b-factor-histogram.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c bfkurt.cc -fPIC -DPIC -o .libs/bfkurt.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rna-backbone.cc -fPIC -DPIC -o .libs/rna-backbone.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c b-factor-histogram.cc -fPIC -DPIC -o .libs/b-factor-histogram.o In file included from stats.cc:25: stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -4194,12 +4230,12 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from b-factor-histogram.cc:288: +In file included from daca.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from daca.cc:28: +In file included from b-factor-histogram.cc:288: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -4210,25 +4246,25 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-analysis.la -rpath /usr/lib/aarch64-linux-gnu bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo b-factor-histogram.lo daca.lo rna-backbone.lo ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-analysis.la -rpath /usr/lib/aarch64-linux-gnu bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo b-factor-histogram.lo daca.lo rna-backbone.lo ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/bfkurt.o .libs/mogul.o .libs/kolmogorov.o .libs/stats.o .libs/cablam.o .libs/typed-distances.o .libs/b-factor-histogram.o .libs/daca.o .libs/rna-backbone.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-analysis.so.0 -o .libs/libcoot-analysis.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-analysis.so.0" && ln -s "libcoot-analysis.so.0.0.0" "libcoot-analysis.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-analysis.so" && ln -s "libcoot-analysis.so.0.0.0" "libcoot-analysis.so") libtool: link: ( cd ".libs" && rm -f "libcoot-analysis.la" && ln -s "../libcoot-analysis.la" "libcoot-analysis.la" ) -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-bfactan bfactan.o libcoot-analysis.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-bfactan bfactan.o libcoot-analysis.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-bfactan bfactan.o ./.libs/libcoot-analysis.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' Making all in cootaneer make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o buccaneer-lib.lo buccaneer-lib.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o buccaneer-prot.lo buccaneer-prot.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 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cootaneer-sequence.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootaneer.la -rpath /usr/lib/aarch64-linux-gnu buccaneer-lib.lo buccaneer-prot.lo buccaneer-sequence.lo cootaneer-sequence.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/buccaneer-lib.o .libs/buccaneer-prot.o .libs/buccaneer-sequence.o .libs/cootaneer-sequence.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcootaneer.so.0 -o .libs/libcootaneer.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcootaneer.so.0" && ln -s "libcootaneer.so.0.0.0" "libcootaneer.so.0") libtool: link: (cd ".libs" && rm -f "libcootaneer.so" && ln -s "libcootaneer.so.0.0.0" "libcootaneer.so") @@ -4237,28 +4273,28 @@ Making all in ideal make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mini-rsr.o mini-rsr.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-restraint.lo simple-restraint.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-restraints.lo make-restraints.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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--mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong 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-DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o chirals.lo chirals.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 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../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. 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-DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-restraint.cc -fPIC -DPIC -o .libs/simple-restraint.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-squareds.cc -fPIC -DPIC -o .libs/chi-squareds.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c distortion.cc -fPIC -DPIC -o .libs/distortion.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chirals.cc -fPIC -DPIC -o .libs/chirals.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flanking.cc -fPIC -DPIC -o .libs/flanking.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c extra-restraints.cc -fPIC -DPIC -o .libs/extra-restraints.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c distortion.cc -fPIC -DPIC -o .libs/distortion.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-restraints.cc -fPIC -DPIC -o .libs/make-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gradients.cc -fPIC -DPIC -o .libs/gradients.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-squareds.cc -fPIC -DPIC -o .libs/chi-squareds.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c extra-restraints.cc -fPIC -DPIC -o .libs/extra-restraints.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-restraint.cc -fPIC -DPIC -o .libs/simple-restraint.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ng.cc -fPIC -DPIC -o .libs/ng.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pepflip.cc -fPIC -DPIC -o .libs/pepflip.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chirals.cc -fPIC -DPIC -o .libs/chirals.o In file included from mini-rsr.cc:56: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -4271,7 +4307,6 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o regularize-minimol.lo regularize-minimol.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from chirals.cc:33: @@ -4280,58 +4315,47 @@ 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, - from distortion.cc:36: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from simple-restraint.hh:162, - from make-restraints.cc:43: + from flanking.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, - from gradients.cc:39: + from ng.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o regularize-minimol.lo regularize-minimol.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c regularize-minimol.cc -fPIC -DPIC -o .libs/regularize-minimol.o In file included from simple-restraint.hh:162, - from flanking.cc:32: + from extra-restraints.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from simple-restraint.hh:162, - from ng.cc:31: + from gradients.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from simple-restraint.hh:174, from mini-rsr.cc:60: zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ -simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +In file included from simple-restraint.hh:162, + from mods.cc:30: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { @@ -4342,37 +4366,40 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from simple-restraint.hh:162, - from simple-restraint.cc:50: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from simple-restraint.hh:162, - from mods.cc:30: + from chi-squareds.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from simple-restraint.hh:162, - from extra-restraints.cc:28: + from distortion.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from simple-restraint.hh:162, - from chi-squareds.cc:41: + from simple-restraint.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2613 | return zo_rama.df(residue_type, phir, psir); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { @@ -4381,68 +4408,74 @@ simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from /usr/include/clipper/core/container_hkl.h:50, + from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, + from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, + from mini-rsr.cc:41: +/usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': +/usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 + 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } + | ^~~~ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from simple-restraint.hh:162, + from make-restraints.cc:43: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from simple-restraint.hh:162, + from regularize-minimol.hh:25, + from regularize-minimol.cc:22: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from chirals.cc:35: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from chirals.cc:35: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +ng.cc: In member function 'void coot::restraints_container_t::analyze_for_bad_restraints(coot::restraint_type_t, double)': +ng.cc:2354:97: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2354 | std::pair distortion_pair = rest.distortion(atom, lennard_jones_epsilon); // 2nd arg is not used for bonds + | ^ simple-restraint.cc: In member function 'std::pair coot::simple_restraint::distortion(mmdb::Atom**, const double&) const': simple-restraint.cc:4068:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4068 | coot::simple_restraint::distortion(mmdb::PAtom *atoms, const double &lj_epsilon) const { | ^~~~~ -In file included from simple-restraint.hh:162, - from regularize-minimol.hh:25, - from regularize-minimol.cc:22: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from /usr/include/clipper/core/container_hkl.h:50, - from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, - from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, - from mini-rsr.cc:41: -/usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': -/usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 - 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } - | ^~~~ +simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2613 | return zo_rama.df(residue_type, phir, psir); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lograma.lo lograma.cpp -ng.cc: In member function 'void coot::restraints_container_t::analyze_for_bad_restraints(coot::restraint_type_t, double)': -ng.cc:2354:97: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2354 | std::pair distortion_pair = rest.distortion(atom, lennard_jones_epsilon); // 2nd arg is not used for bonds - | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lograma.lo lograma.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lograma.cpp -fPIC -DPIC -o .libs/lograma.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o extra-restraints-kk.lo extra-restraints-kk.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o extra-restraints-kk.lo extra-restraints-kk.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c extra-restraints-kk.cc -fPIC -DPIC -o .libs/extra-restraints-kk.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 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-DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-restraint-kk.lo simple-restraint-kk.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o torsion-bonds.lo torsion-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-restraint-kk.cc -fPIC -DPIC -o .libs/simple-restraint-kk.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o torsion-bonds.lo torsion-bonds.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-compare-residues.lo coot-compare-residues.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c torsion-bonds.cc -fPIC -DPIC -o .libs/torsion-bonds.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-compare-residues.lo coot-compare-residues.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-compare-residues.cc -fPIC -DPIC -o .libs/coot-compare-residues.o In file included from simple-restraint.hh:162, from process-dfs-in-range.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c torsion-bonds.cc -fPIC -DPIC -o .libs/torsion-bonds.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-compare-residues.cc -fPIC -DPIC -o .libs/coot-compare-residues.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o link-restraints.lo link-restraints.cc In file included from simple-restraint.hh:162, from extra-restraints-kk.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': @@ -4453,27 +4486,25 @@ simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2613 | return zo_rama.df(residue_type, phir, psir); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o link-restraints.lo link-restraints.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c link-restraints.cc -fPIC -DPIC -o .libs/link-restraints.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o parallel-planes.lo parallel-planes.cc In file included from simple-restraint.hh:162, - from torsion-bonds.cc:25: + from simple-restraint-kk.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c parallel-planes.cc -fPIC -DPIC -o .libs/parallel-planes.o +simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from simple-restraint.hh:162, - from simple-restraint-kk.cc:23: + from coot-compare-residues.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from simple-restraint.hh:162, - from coot-compare-residues.cc:24: + from torsion-bonds.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -4486,89 +4517,88 @@ simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from parallel-planes.cc:22: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pull-restraint.lo pull-restraint.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o trans-peptide.lo trans-peptide.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o parallel-planes.lo parallel-planes.cc +simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2613 | return zo_rama.df(residue_type, phir, psir); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c parallel-planes.cc -fPIC -DPIC -o .libs/parallel-planes.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pull-restraint.lo pull-restraint.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pull-restraint.cc -fPIC -DPIC -o .libs/pull-restraint.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c trans-peptide.cc -fPIC -DPIC -o .libs/trans-peptide.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o model-bond-deltas.lo model-bond-deltas.cc +In file included from parallel-planes.cc:22: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from simple-restraint.hh:162, from link-restraints.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" 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"-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c write-png.cc -fPIC -DPIC -o .libs/write-png.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 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-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o neutron.lo neutron.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c zo-rama.cc -fPIC -DPIC -o .libs/zo-rama.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi.lo phi-psi.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c crankshaft.cc -fPIC -DPIC -o .libs/crankshaft.o In file included from parallel-planes.cc:23: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c crankshaft.cc -fPIC -DPIC -o .libs/crankshaft.o -In file included from zo-rama.hh:42, - from write-png.cc:28: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi.cc -fPIC -DPIC -o .libs/phi-psi.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c neutron.cc -fPIC -DPIC -o .libs/neutron.o In file included from simple-restraint.hh:162, from pull-restraint.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o neutron.lo neutron.cc In file included from zo-rama.hh:42, - from zo-rama.cc:29: + from write-png.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lv.o lv.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c neutron.cc -fPIC -DPIC -o .libs/neutron.o -simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from simple-restraint.hh:162, - from model-bond-deltas.cc:27: +In file included from zo-rama.hh:42, + from zo-rama.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from simple-restraint.hh:162, - from trans-peptide.cc:24: +In file included from zo-rama.hh:42, + from crankshaft.hh:37, + from crankshaft.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from lv.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from zo-rama.hh:42, - from crankshaft.hh:37, - from crankshaft.cc:30: +In file included from simple-restraint.hh:162, + from trans-peptide.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -4577,15 +4607,6 @@ simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from model-bond-deltas.cc:29: -../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': -../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 139 | std::pair median_and_iqr() const { - | ^ In file included from crankshaft.cc:36: simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -4597,10 +4618,25 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +In file included from simple-restraint.hh:162, + from model-bond-deltas.cc:27: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': crankshaft.cc:1393:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1393 | const zo::rama_table_set &zorts) const { | ^~~~~ +simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from model-bond-deltas.cc:29: +../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': +../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 139 | std::pair median_and_iqr() const { + | ^ In file included from simple-restraint.hh:162, from neutron.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': @@ -4611,11 +4647,6 @@ simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from lv.cc:29: -simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': crankshaft.cc:871:71: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 871 | std::pair grads = zorts.df(pp, rt); @@ -4624,6 +4655,11 @@ crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ +In file included from lv.cc:29: +simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': crankshaft.cc:833:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 833 | coot::crankshaft::optimize_a_triple::df(const gsl_vector *v, @@ -4632,54 +4668,49 @@ crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-ideal.la -rpath /usr/lib/aarch64-linux-gnu simple-restraint.lo make-restraints.lo ng.lo chi-squareds.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo process-dfs-in-range.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo pull-restraint.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo neutron.lo ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpng16 -lm +/bin/sh ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-ideal.la -rpath /usr/lib/aarch64-linux-gnu simple-restraint.lo make-restraints.lo ng.lo chi-squareds.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo process-dfs-in-range.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo pull-restraint.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo neutron.lo ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpng16 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/simple-restraint.o .libs/make-restraints.o .libs/ng.o .libs/chi-squareds.o .libs/mods.o .libs/distortion.o .libs/chirals.o .libs/flanking.o .libs/gradients.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/process-dfs-in-range.o .libs/extra-restraints-kk.o .libs/simple-restraint-kk.o .libs/torsion-bonds.o .libs/coot-compare-residues.o .libs/link-restraints.o .libs/parallel-planes.o .libs/pull-restraint.o .libs/trans-peptide.o .libs/model-bond-deltas.o .libs/write-png.o .libs/zo-rama.o .libs/crankshaft.o .libs/phi-psi.o .libs/neutron.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -lpthread ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-ideal.so.0 -o .libs/libcoot-ideal.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-ideal.so.0" && ln -s "libcoot-ideal.so.0.0.0" "libcoot-ideal.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-ideal.so" && ln -s "libcoot-ideal.so.0.0.0" "libcoot-ideal.so") libtool: link: ( cd ".libs" && rm -f "libcoot-ideal.la" && ln -s "../libcoot-ideal.la" "libcoot-ideal.la" ) -/bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o mini-rsr-bin mini-rsr.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -lpthread -/bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o coot-ligand-validation-bin lv.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lpthread -libtool: link: g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/mini-rsr-bin mini-rsr.o ./.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread +/bin/sh ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o mini-rsr-bin mini-rsr.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -lpthread +/bin/sh ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o coot-ligand-validation-bin lv.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lpthread libtool: link: g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-ligand-validation-bin lv.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 ./.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so -lpthread +libtool: link: g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/mini-rsr-bin mini-rsr.o ./.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' Making all in ligand make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c monomer-utils.cc -fPIC -DPIC -o .libs/monomer-utils.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue_by_phi_psi.cc -fPIC -DPIC -o .libs/residue_by_phi_psi.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dunbrack.cc -fPIC -DPIC -o .libs/dunbrack.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fast-ss-search.cc -fPIC -DPIC -o .libs/fast-ss-search.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rigid-body.cc -fPIC -DPIC -o .libs/rigid-body.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-angles.cc -fPIC -DPIC -o .libs/chi-angles.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fast-ss-search.cc -fPIC -DPIC -o .libs/fast-ss-search.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-angles-autogen.cc -fPIC -DPIC -o .libs/chi-angles-autogen.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand-extras.cc -fPIC -DPIC -o .libs/ligand-extras.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c helix-placement.cc -fPIC -DPIC -o .libs/helix-placement.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c chi-angles.cc -fPIC -DPIC -o .libs/chi-angles.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c wiggly-ligand.cc -fPIC -DPIC -o .libs/wiggly-ligand.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand.cc -fPIC -DPIC -o .libs/ligand.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dunbrack.cc -fPIC -DPIC -o .libs/dunbrack.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue_by_phi_psi.cc -fPIC -DPIC -o .libs/residue_by_phi_psi.o In file included from find-ligand.cc:46: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from dunbrack.cc:27: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../mini-mol/mini-mol.hh:29, - from ligand.hh:32, - from ligand.cc:60: + from rigid-body.hh:25, + from rigid-body.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -4690,19 +4721,21 @@ 209 | std::pair weight_abscissa(int idx) { | ^ In file included from ../mini-mol/mini-mol.hh:29, - from rigid-body.hh:25, - from rigid-body.cc:23: + from ligand.hh:32, + from ligand.cc:60: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from ../mini-mol/mini-mol-utils.hh:22, - from fast-ss-search.cc:43: +In file included from dunbrack.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +ligand-extras.cc: In member function 'std::pair coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager*) const': +ligand-extras.cc:176:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 176 | coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager *mol) const { + | ^~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from ligand.cc:69: @@ -4717,20 +4750,22 @@ 63 | std::pair mean_and_variance() const { | ^ In file included from ../mini-mol/mini-mol.hh:29, + from ../mini-mol/mini-mol-utils.hh:22, + from fast-ss-search.cc:43: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/coot-coord-extras.hh:33, from chi-angles.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -ligand-extras.cc: In member function 'std::pair coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager*) const': -ligand-extras.cc:176:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 176 | coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager *mol) const { - | ^~~~~ -In file included from ../mini-mol/mini-mol.hh:29, - from ligand.hh:32, - from residue_by_phi_psi.hh:37, - from residue_by_phi_psi.cc:27: +In file included from ../ideal/simple-restraint.hh:162, + from ../ideal/regularize-minimol.hh:25, + from wiggly-ligand.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -4743,19 +4778,22 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ideal-rna.lo ideal-rna.cc -In file included from ../ideal/simple-restraint.hh:162, - from ../ideal/regularize-minimol.hh:25, - from wiggly-ligand.cc:26: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ideal-rna.lo ideal-rna.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o richardson-rotamers.lo richardson-rotamers.cc +In file included from ../mini-mol/mini-mol.hh:29, + from ligand.hh:32, + from residue_by_phi_psi.hh:37, + from residue_by_phi_psi.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ideal-rna.cc -fPIC -DPIC -o .libs/ideal-rna.o ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ideal-rna.cc -fPIC -DPIC -o .libs/ideal-rna.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c richardson-rotamers.cc -fPIC -DPIC -o .libs/richardson-rotamers.o In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, @@ -4764,10 +4802,8 @@ /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o richardson-rotamers.lo richardson-rotamers.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 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-DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o richardson-rotamer.lo richardson-rotamer.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c richardson-rotamer.cc -fPIC -DPIC -o .libs/richardson-rotamer.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o richardson-rotamer.lo richardson-rotamer.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rotamer.lo rotamer.cc In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, @@ -4796,21 +4832,23 @@ residue_by_phi_psi.cc:682:80: note: '' declared here 682 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" 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-DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rotamer-tables.lo rotamer-tables.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c torsion-general.cc -fPIC -DPIC -o .libs/torsion-general.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer-tables.cc -fPIC -DPIC -o .libs/rotamer-tables.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c primitive-chi-angles.cc -fPIC -DPIC -o .libs/primitive-chi-angles.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dipole.lo dipole.cc In file included from rotamer.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o primitive-chi-angles.lo primitive-chi-angles.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o base-pairing.lo base-pairing.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dipole.cc -fPIC -DPIC -o .libs/dipole.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o backrub-rotamer.lo backrub-rotamer.cc In file included from dipole.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -4821,67 +4859,57 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool 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-I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o multi-peptide.lo multi-peptide.cc In file included from backrub-rotamer.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c multi-peptide.cc -fPIC -DPIC -o .libs/multi-peptide.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligands-db.lo ligands-db.cc In file included from ../mini-mol/mini-mol.hh:29, - from multi-peptide.hh:32, - from trace.cc:25: + from trace.hh:29, + from trace-2.cc:23: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c multi-peptide.cc -fPIC -DPIC -o .libs/multi-peptide.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o joining-residues.lo joining-residues.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligands-db.cc -fPIC -DPIC -o .libs/ligands-db.o +backrub-rotamer.cc: In function 'std::pair > coot::get_clash_score(const minimol::molecule&, atom_selection_container_t, int)': +backrub-rotamer.cc:596:76: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 596 | std::pair rotamer_info = a_rotamer.get_pos(); + | ^ In file included from ../mini-mol/mini-mol.hh:29, - from trace.hh:29, - from trace-2.cc:23: + from multi-peptide.hh:32, + from trace.cc:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligands-db.cc -fPIC -DPIC -o .libs/ligands-db.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o joining-residues.lo joining-residues.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand-score-card.lo ligand-score-card.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c joining-residues.cc -fPIC -DPIC -o .libs/joining-residues.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand-score-card.cc -fPIC -DPIC -o .libs/ligand-score-card.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o side-chain-densities.lo side-chain-densities.cc In file included from ligands-db.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -backrub-rotamer.cc: In function 'std::pair > coot::get_clash_score(const minimol::molecule&, atom_selection_container_t, int)': -backrub-rotamer.cc:596:76: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 596 | std::pair rotamer_info = a_rotamer.get_pos(); - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c side-chain-densities.cc -fPIC -DPIC -o .libs/side-chain-densities.o -In file included from ../mini-mol/mini-mol.hh:29, - from ligand-score-card.hh:31, - from ligand-score-card.cc:26: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand-score-card.lo ligand-score-card.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand-score-card.cc -fPIC -DPIC -o .libs/ligand-score-card.o +In file included from ../ideal/simple-restraint.hh:162, + from multi-peptide.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o tube-finder.lo tube-finder.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o smith-waterman.lo smith-waterman.cc -trace.cc: In constructor 'coot::trace::trace(const clipper::Xmap&)': -trace.cc:53:61: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 53 | std::pair mv = util::mean_and_variance(xmap); - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c tube-finder.cc -fPIC -DPIC -o .libs/tube-finder.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o side-chain.lo side-chain.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o side-chain-densities.lo side-chain-densities.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o tube-finder.lo tube-finder.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o smith-waterman.lo smith-waterman.cc In file included from ../mini-mol/mini-mol.hh:29, from ligand.hh:32, from residue_by_phi_psi.hh:37, @@ -4890,16 +4918,48 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c side-chain-densities.cc -fPIC -DPIC -o .libs/side-chain-densities.o +In file included from ../mini-mol/mini-mol.hh:29, + from ligand-score-card.hh:31, + from ligand-score-card.cc:26: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c tube-finder.cc -fPIC -DPIC -o .libs/tube-finder.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c smith-waterman.cc -fPIC -DPIC -o .libs/smith-waterman.o +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from ../coot-utils/coot-map-utils.hh:33, + from multi-peptide.cc:32: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o side-chain.lo side-chain.cc +trace.cc: In constructor 'coot::trace::trace(const clipper::Xmap&)': +trace.cc:53:61: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 53 | std::pair mv = util::mean_and_variance(xmap); + | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c side-chain.cc -fPIC -DPIC -o .libs/side-chain.o In file included from tube-finder.cc:30: ../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': ../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o refine-isolated-chain.lo refine-isolated-chain.cc -In file included from ../ideal/simple-restraint.hh:162, - from multi-peptide.cc:27: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o refine-isolated-chain.lo refine-isolated-chain.cc +g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o find-waters.o find-waters.cc +In file included from side-chain-densities.cc:38: +../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': +../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 139 | std::pair median_and_iqr() const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c refine-isolated-chain.cc -fPIC -DPIC -o .libs/refine-isolated-chain.o +In file included from ../mini-mol/mini-mol.hh:29, + from ligand.hh:32, + from find-waters.cc:45: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -4909,12 +4969,6 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c refine-isolated-chain.cc -fPIC -DPIC -o .libs/refine-isolated-chain.o -In file included from side-chain-densities.cc:38: -../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': -../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 139 | std::pair median_and_iqr() const { - | ^ In file included from side-chain.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -4924,29 +4978,15 @@ tube-finder.cc:45:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 45 | std::pair mv = util::mean_and_variance(blurred_xmap); | ^ -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from multi-peptide.cc:32: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ +multi-peptide.cc: In function 'coot::minimol::fragment coot::multi_build_N_terminal_ALA(mmdb::Residue*, mmdb::Residue*, const std::string&, float, int, const protein_geometry&, const clipper::Xmap&, std::pair, bool)': +multi-peptide.cc:701:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 701 | coot::multi_build_N_terminal_ALA(mmdb::Residue *res_p, + | ^~~~ +g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-ligands-db.o make-ligands-db.cc side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': side-chain-densities.cc:1293:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~~ -g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o find-waters.o find-waters.cc -In file included from ../mini-mol/mini-mol.hh:29, - from ligand.hh:32, - from find-waters.cc:45: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-ligands-db.o make-ligands-db.cc In file included from ../ideal/simple-restraint.hh:162, from refine-isolated-chain.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': @@ -4954,12 +4994,17 @@ 209 | std::pair weight_abscissa(int idx) { | ^ g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o identify-protein.o identify-protein.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libres-tracer.lo libres-tracer.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-rsr-extend-fragments.lo rama-rsr-extend-fragments.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libres-tracer.lo libres-tracer.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-rsr-extend-fragments.lo rama-rsr-extend-fragments.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o new-residue-by-3-phi-psi.lo new-residue-by-3-phi-psi.cc ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c libres-tracer.cc -fPIC -DPIC -o .libs/libres-tracer.o +/bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o dSFMT.lo dSFMT.c +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c new-residue-by-3-phi-psi.cc -fPIC -DPIC -o .libs/new-residue-by-3-phi-psi.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-rsr-extend-fragments.cc -fPIC -DPIC -o .libs/rama-rsr-extend-fragments.o In file included from /usr/include/clipper/core/cell.h:50, from /usr/include/clipper/core/coords.h:49, from /usr/include/clipper/core/fftmap.h:49, @@ -5085,43 +5130,34 @@ trace.cc:223:29: note: 'rtop_best.clipper::RTop_orth::.clipper::RTop::trn_.clipper::Vec3::vec[2]' was declared here 223 | clipper::RTop_orth rtop_best; | ^~~~~~~~~ -side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': -side-chain-densities.cc:2408:64: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2408 | std::pair mi = s.median_and_iqr(); - | ^ -multi-peptide.cc: In function 'coot::minimol::fragment coot::multi_build_N_terminal_ALA(mmdb::Residue*, mmdb::Residue*, const std::string&, float, int, const protein_geometry&, const clipper::Xmap&, std::pair, bool)': -multi-peptide.cc:701:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 701 | coot::multi_build_N_terminal_ALA(mmdb::Residue *res_p, - | ^~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c libres-tracer.cc -fPIC -DPIC -o .libs/libres-tracer.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-rsr-extend-fragments.cc -fPIC -DPIC -o .libs/rama-rsr-extend-fragments.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o new-residue-by-3-phi-psi.lo new-residue-by-3-phi-psi.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c new-residue-by-3-phi-psi.cc -fPIC -DPIC -o .libs/new-residue-by-3-phi-psi.o +libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c dSFMT.c -fPIC -DPIC -o .libs/dSFMT.o In file included from identify-protein.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o dSFMT.lo dSFMT.c +In file included from ../coot-utils/coot-map-utils.hh:33, + from new-residue-by-3-phi-psi.cc:29: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from ../mini-mol/mini-mol.hh:29, from libres-tracer.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c dSFMT.c -fPIC -DPIC -o .libs/dSFMT.o In file included from ../coot-utils/coot-map-utils.hh:33, from rama-rsr-extend-fragments.cc:28: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from new-residue-by-3-phi-psi.cc:29: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ +side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': +side-chain-densities.cc:2408:64: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2408 | std::pair mi = s.median_and_iqr(); + | ^ In file included from libres-tracer.cc:46: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -5131,27 +5167,11 @@ libres-tracer.cc:1932:77: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1932 | return std::make_pair(sum_forward, sum_backward); | ^ -side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': -side-chain-densities.cc:1293:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1293 | coot::density_box_t::mean_and_variance() const { - | ^~~~ In file included from rama-rsr-extend-fragments.cc:32: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -libres-tracer.cc: In function 'std::vector > make_spin_scored_pairs(const std::vector >&, unsigned int, const clipper::Xmap&, mmdb::Manager*, mmdb::Atom**, int)': -libres-tracer.cc:496:67: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 496 | std::pair mv = coot::util::mean_and_variance(xmap); - | ^ -libres-tracer.cc: In lambda function: -libres-tracer.cc:1940:89: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1940 | std::pair score = get_tree_scores(tree); - | ^ -side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': -side-chain-densities.cc:2302:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2302 | coot::side_chain_densities::combine_directory(const std::string &rot_dir, int n_steps, - | ^~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/string:51, from /usr/include/c++/14/stdexcept:39, @@ -5177,24 +5197,40 @@ new-residue-by-3-phi-psi.cc:127:80: note: '' declared here 127 | atoms_in_residue = connecting_atoms_t(N_at_pos, CA_at_pos, C_at_pos); | ^ -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-ligand.la -rpath /usr/lib/aarch64-linux-gnu ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo joining-residues.lo ligand-score-card.lo side-chain-densities.lo tube-finder.lo smith-waterman.lo side-chain.lo refine-isolated-chain.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread +libres-tracer.cc: In function 'std::vector > make_spin_scored_pairs(const std::vector >&, unsigned int, const clipper::Xmap&, mmdb::Manager*, mmdb::Atom**, int)': +libres-tracer.cc:496:67: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 496 | std::pair mv = coot::util::mean_and_variance(xmap); + | ^ +libres-tracer.cc: In lambda function: +libres-tracer.cc:1940:89: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1940 | std::pair score = get_tree_scores(tree); + | ^ +side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': +side-chain-densities.cc:1293:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1293 | coot::density_box_t::mean_and_variance() const { + | ^~~~ +side-chain-densities.cc: In static member function 'static void coot::side_chain_densities::combine_directory(const std::string&, int, double, double, double, double)': +side-chain-densities.cc:2302:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2302 | coot::side_chain_densities::combine_directory(const std::string &rot_dir, int n_steps, + | ^~~~ +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-ligand.la -rpath /usr/lib/aarch64-linux-gnu ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo joining-residues.lo ligand-score-card.lo side-chain-densities.lo tube-finder.lo smith-waterman.lo side-chain.lo refine-isolated-chain.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/trace.o .libs/trace-2.o .libs/multi-peptide.o .libs/ligands-db.o .libs/joining-residues.o .libs/ligand-score-card.o .libs/side-chain-densities.o .libs/tube-finder.o .libs/smith-waterman.o .libs/side-chain.o .libs/refine-isolated-chain.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../analysis/.libs/libcoot-analysis.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-ligand.so.0 -o .libs/libcoot-ligand.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-ligand.so.0" && ln -s "libcoot-ligand.so.0.0.0" "libcoot-ligand.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-ligand.so" && ln -s "libcoot-ligand.so.0.0.0" "libcoot-ligand.so") libtool: link: ( cd ".libs" && rm -f "libcoot-ligand.la" && ln -s "../libcoot-ligand.la" "libcoot-ligand.la" ) -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-findligand-bin find-ligand.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../db-main/libcoot-db-main.la ../cootaneer/libcootaneer.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-findwaters-bin find-waters.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../ccp4mg-utils/libccp4mg-utils.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-make-ligands-db make-ligands-db.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../cootaneer/libcootaneer.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-identify-protein-bin identify-protein.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-findligand-bin find-ligand.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../db-main/libcoot-db-main.la ../cootaneer/libcootaneer.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-findwaters-bin find-waters.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../ccp4mg-utils/libccp4mg-utils.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-make-ligands-db make-ligands-db.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../cootaneer/libcootaneer.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-identify-protein-bin identify-protein.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libres-tracer.cc: In function 'std::vector > make_spin_scored_pairs(const std::vector >&, unsigned int, const clipper::Xmap&, mmdb::Manager*, mmdb::Atom**, int)': libres-tracer.cc:481:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 481 | make_spin_scored_pairs(const std::vector > &atom_pairs_within_distance, | ^~~~~~~~~~~~~~~~~~~~~~ libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-identify-protein-bin identify-protein.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -fopenmp -libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-findwaters-bin find-waters.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp -libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-make-ligands-db make-ligands-db.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../cootaneer/.libs/libcootaneer.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -fopenmp libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-findligand-bin find-ligand.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../db-main/.libs/libcoot-db-main.so ../cootaneer/.libs/libcootaneer.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-res-tracer.la -rpath /usr/lib/aarch64-linux-gnu libres-tracer.lo rama-rsr-extend-fragments.lo new-residue-by-3-phi-psi.lo dSFMT.lo libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 +libtool: link: g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-make-ligands-db make-ligands-db.o ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../geometry/.libs/libcoot-geometry.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../cootaneer/.libs/libcootaneer.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D 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./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../utils/.libs/libcoot-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms 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../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libres-tracer.o .libs/rama-rsr-extend-fragments.o .libs/new-residue-by-3-phi-psi.o .libs/dSFMT.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcoot-ligand.so ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-res-tracer.so.0 -o .libs/libcoot-res-tracer.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-res-tracer.so.0" && ln -s "libcoot-res-tracer.so.0.0.0" "libcoot-res-tracer.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-res-tracer.so" && ln -s "libcoot-res-tracer.so.0.0.0" "libcoot-res-tracer.so") @@ -5202,47 +5238,58 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' Making all in coords make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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-DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mmdb-extras.lo mmdb-extras.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c utils.cc -fPIC -DPIC -o .libs/utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-close.cc -fPIC -DPIC -o .libs/coot-close.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmdb.cc -fPIC -DPIC -o .libs/mmdb.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer-markup.cc -fPIC -DPIC -o .libs/rotamer-markup.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c mmdb-crystal.cc -fPIC -DPIC -o .libs/mmdb-crystal.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phenix-geo.cc -fPIC -DPIC -o .libs/phenix-geo.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o loop-path.lo loop-path.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rotamer-markup.cc -fPIC -DPIC -o .libs/rotamer-markup.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o loop-path.lo loop-path.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c loop-path.cc -fPIC -DPIC -o .libs/loop-path.o +In file included from ../lidia-core/lbg-molfile.hh:32, + from mmdb.hh:27, + from mmdb-crystal.cc:48: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from rotamer-markup.cc:29: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from phenix-geo.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c loop-path.cc -fPIC -DPIC -o .libs/loop-path.o -In file included from rotamer-markup.cc:29: +In file included from mmdb-crystal.cc:50: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-plot-phi-psi.lo rama-plot-phi-psi.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi-prob.lo phi-psi-prob.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-plot-phi-psi.lo rama-plot-phi-psi.cc In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, - from phenix-geo-bonds.cc:25: + from mmdb-extras.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -5254,33 +5301,22 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from Bond_lines.cc:41: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from mmdb.hh:27, - from mmdb-crystal.cc:48: + from phenix-geo-bonds.cc:25: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o -In file included from mmdb-crystal.cc:50: +In file included from Bond_lines.cc:41: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi-prob.lo phi-psi-prob.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi-prob.cc -fPIC -DPIC -o .libs/phi-psi-prob.o -In file included from ../lidia-core/lbg-molfile.hh:32, - from mmdb.hh:27, - from mmdb-extras.cc:35: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ramachandran-validation.lo ramachandran-validation.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ramachandran-validation.lo ramachandran-validation.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ramachandran-validation.cc -fPIC -DPIC -o .libs/ramachandran-validation.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, @@ -5294,7 +5330,7 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coords.la -rpath /usr/lib/aarch64-linux-gnu Bond_lines.lo Cartesian.lo cos-sin.lo phenix-geo-bonds.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo rotamer-markup.lo loop-path.lo rama-plot-phi-psi.lo phi-psi-prob.lo ramachandran-validation.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../cootaneer/libcootaneer.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread +/bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DXDATADIR='"/usr/share"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coords.la -rpath /usr/lib/aarch64-linux-gnu Bond_lines.lo Cartesian.lo cos-sin.lo phenix-geo-bonds.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo rotamer-markup.lo loop-path.lo rama-plot-phi-psi.lo phi-psi-prob.lo ramachandran-validation.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../cootaneer/libcootaneer.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/phenix-geo-bonds.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/phenix-geo.o .libs/rotamer-markup.o .libs/loop-path.o .libs/rama-plot-phi-psi.o .libs/phi-psi-prob.o .libs/ramachandran-validation.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../ligand/.libs/libcoot-ligand.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../cootaneer/.libs/libcootaneer.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-coords.so.0 -o .libs/libcoot-coords.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-coords.so.0" && ln -s "libcoot-coords.so.0.0.0" "libcoot-coords.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-coords.so" && ln -s "libcoot-coords.so.0.0.0" "libcoot-coords.so") @@ -5302,27 +5338,27 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' Making all in density-contour make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c density-contour-triangles.cc -fPIC -DPIC -o .libs/density-contour-triangles.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gaussian-surface.cc -fPIC -DPIC -o .libs/gaussian-surface.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c density-contour-triangles.cc -fPIC -DPIC -o .libs/density-contour-triangles.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I.. -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c occlusion.cc -fPIC -DPIC -o .libs/occlusion.o +In file included from CIsoSurface.cpp:1244: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from density-contour-triangles.cc:155: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from CIsoSurface.cpp:1244: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from gaussian-surface.cc:36: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -5351,7 +5387,7 @@ CIsoSurface.cpp:785:24: note: 'grid_max' declared here 785 | clipper::Coord_grid grid_max; | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-isosurface.la -rpath /usr/lib/aarch64-linux-gnu Vectors.lo CIsoSurface.lo density-contour-triangles.lo occlusion.lo gaussian-surface.lo ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-isosurface.la -rpath /usr/lib/aarch64-linux-gnu Vectors.lo CIsoSurface.lo density-contour-triangles.lo occlusion.lo gaussian-surface.lo ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o .libs/occlusion.o .libs/gaussian-surface.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs ../coords/.libs/libcoot-coords.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-isosurface.so.0 -o .libs/libcoot-isosurface.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-isosurface.so.0" && ln -s "libcoot-isosurface.so.0.0.0" "libcoot-isosurface.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-isosurface.so" && ln -s "libcoot-isosurface.so.0.0.0" "libcoot-isosurface.so") @@ -5359,13 +5395,13 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' Making all in skeleton make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dm-utils.lo dm-utils.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphical_skel.lo graphical_skel.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ 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--mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o BuildCas.lo BuildCas.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dm-utils.cc -fPIC -DPIC -o .libs/dm-utils.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphical_skel.cc -fPIC -DPIC -o .libs/graphical_skel.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BuildCas.cc -fPIC -DPIC -o .libs/BuildCas.o -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-skeleton.la -rpath /usr/lib/aarch64-linux-gnu dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 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graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/angles/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs ../angles/.libs/libcoot-AngleInfo.so ../ideal/.libs/libcoot-ideal.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif 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"libcoot-skeleton.so") @@ -5373,13 +5409,13 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' Making all in high-res make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sequence-assignment.lo sequence-assignment.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE 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-DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c high-res.cc -fPIC -DPIC -o .libs/high-res.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-atom-graph.cc -fPIC -DPIC -o .libs/coot-atom-graph.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-distortions.cc -fPIC -DPIC -o .libs/residue-distortions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-assignment.cc -fPIC -DPIC -o .libs/sequence-assignment.o In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, @@ -5395,11 +5431,6 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from sequence-assignment.cc:30: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from high-res.cc:24: @@ -5407,6 +5438,11 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from sequence-assignment.cc:30: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../mini-mol/mini-mol.hh:29, from coot-atom-graph.hh:27, from high-res.cc:27: @@ -5414,7 +5450,7 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-high-res.la -rpath /usr/lib/aarch64-linux-gnu high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-high-res.la -rpath /usr/lib/aarch64-linux-gnu high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../coot-utils/.libs/libcoot-coord-utils.so ../coords/.libs/libcoot-coords.so ../ligand/.libs/libcoot-ligand.so ../coot-utils/.libs/libcoot-map-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-high-res.so.0 -o .libs/libcoot-high-res.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-high-res.so.0" && ln -s "libcoot-high-res.so.0.0.0" "libcoot-high-res.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-high-res.so" && ln -s "libcoot-high-res.so.0.0.0" "libcoot-high-res.so") @@ -5422,9 +5458,9 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' Making all in build make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/build' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CalphaBuild.lo CalphaBuild.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CalphaBuild.lo CalphaBuild.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CalphaBuild.cc -fPIC -DPIC -o .libs/CalphaBuild.o -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-cabuild.la -rpath /usr/lib/aarch64-linux-gnu CalphaBuild.lo ../angles/libcoot-AngleInfo.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-cabuild.la -rpath /usr/lib/aarch64-linux-gnu CalphaBuild.lo ../angles/libcoot-AngleInfo.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/CalphaBuild.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/angles/.libs ../angles/.libs/libcoot-AngleInfo.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-cabuild.so.0 -o .libs/libcoot-cabuild.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-cabuild.so.0" && ln -s "libcoot-cabuild.so.0.0.0" "libcoot-cabuild.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-cabuild.so" && ln -s "libcoot-cabuild.so.0.0.0" "libcoot-cabuild.so") @@ -5434,32 +5470,46 @@ make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making all in CXXSurface make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXCircle.lo CXXCircle.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXTorusElement.cpp -fPIC -DPIC -o .libs/CXXTorusElement.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXFortranFile.cpp -fPIC -DPIC -o .libs/CXXFortranFile.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCircle.cpp -fPIC -DPIC -o .libs/CXXCircle.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereTriangle.cpp -fPIC -DPIC -o .libs/CXXSphereTriangle.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereElement.cpp -fPIC -DPIC -o .libs/CXXSphereElement.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereTriangleEdge.cpp -fPIC -DPIC -o .libs/CXXSphereTriangleEdge.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurface.cpp -fPIC -DPIC -o .libs/CXXSurface.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSphereNode.cpp -fPIC -DPIC -o .libs/CXXSphereNode.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurfaceVertex.cpp -fPIC -DPIC -o .libs/CXXSurfaceVertex.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXTorusElement.cpp -fPIC -DPIC -o .libs/CXXTorusElement.o -In file included from CXXSurfaceVertex.h:26, - from CXXCircleNode.cpp:24: +CXXFortranFile.cpp: In member function 'size_t CXXFortranFile::getFortranData(char*, size_t, size_t, int)': +CXXFortranFile.cpp:192:20: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] + 192 | for (int i=0; i() { | ^ @@ -5476,8 +5526,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' -In file included from CXXSphereNode.h:30, - from CXXSphereNode.cpp:25: +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXTorusNode.lo CXXTorusNode.cpp +In file included from CXXSurfaceVertex.h:26, + from CXXSurfaceVertex.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -5485,15 +5536,6 @@ CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ -CXXCoord.h:43:16: note: remove the '< >' -CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -CXXCoord.h:49:16: note: remove the '< >' -CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, from CXXCircle.cpp:26: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5512,8 +5554,17 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' -In file included from CXXSphereTriangle.h:28, - from CXXSphereTriangle.cpp:25: +CXXCoord.h:43:16: note: remove the '< >' +CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +CXXCoord.h:49:16: note: remove the '< >' +CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +CXXCoord.h:52:16: note: remove the '< >' +In file included from CXXSurfaceVertex.h:26, + from CXXSphereElement.cpp:26: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -5531,7 +5582,7 @@ | ^ CXXCoord.h:52:16: note: remove the '< >' In file included from CXXSurfaceVertex.h:26, - from CXXNewHood.cpp:27: + from CXXCircleNode.cpp:24: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -5565,8 +5616,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXTriangle.lo CXXTriangle.cpp In file included from CXXSurfaceVertex.h:26, - from CXXSphereElement.cpp:26: + from CXXTorusElement.cpp:26: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -5574,10 +5626,17 @@ CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ -In file included from CXXSurfaceVertex.h:26, - from CXXTriangle.h:27, - from CXXSurface.h:39, - from CXXSurface.cpp:29: +CXXCoord.h:43:16: note: remove the '< >' +CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +CXXCoord.h:49:16: note: remove the '< >' +CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +CXXCoord.h:52:16: note: remove the '< >' +In file included from CXXSphereNode.h:30, + from CXXSphereNode.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -5594,6 +5653,15 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' +In file included from CXXSurfaceVertex.h:26, + from CXXNewHood.cpp:27: +CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +CXXCoord.h:39:16: note: remove the '< >' +CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ CXXCoord.h:43:16: note: remove the '< >' CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { @@ -5603,8 +5671,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' -In file included from CXXSurfaceVertex.h:26, - from CXXTorusElement.cpp:26: +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXTorusNode.cpp -fPIC -DPIC -o .libs/CXXTorusNode.o +In file included from CXXSphereTriangle.h:28, + from CXXSphereTriangle.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -5621,28 +5690,20 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXTorusNode.lo CXXTorusNode.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXTriangle.lo CXXTriangle.cpp -CXXCircleNode.cpp: In static member function 'static int CXXCircleNode::probeContacts(std::vector&, double, std::map >&)': -CXXCircleNode.cpp:176:59: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<__gnu_cxx::__normal_iterator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 176 | for (int iCentralProbe = 0; iCentralProbe < centralBin.size(); iCentralProbe++){ - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -CXXFortranFile.cpp: In member function 'size_t CXXFortranFile::getFortranData(char*, size_t, size_t, int)': -CXXFortranFile.cpp:192:20: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] - 192 | for (int i=0; i&)': +CXXSphereElement.cpp:673:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 673 | for (int i=0; i() { | ^ @@ -5659,6 +5720,11 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXTriangle.cpp -fPIC -DPIC -o .libs/CXXTriangle.o +CXXCircleNode.cpp: In static member function 'static int CXXCircleNode::probeContacts(std::vector&, double, std::map >&)': +CXXCircleNode.cpp:176:59: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<__gnu_cxx::__normal_iterator > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 176 | for (int iCentralProbe = 0; iCentralProbe < centralBin.size(); iCentralProbe++){ + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ CXXSurface.cpp: In member function 'int CXXSurface::readGraspFile(std::string)': CXXSurface.cpp:155:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 155 | for (int i=0; i&)': CXXSurface.cpp:817:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 817 | if (int(vertices.size()) <= iVertex){ @@ -5701,52 +5768,21 @@ CXXSurface.cpp:950:14: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] 950 | if (type <= int(vectors.size())){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ -In file included from CXXSurfaceVertex.h:26, - from CXXSurfaceVertex.cpp:25: -CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ CXXSurface.cpp: In member function 'void CXXSurface::compress(double)': CXXSurface.cpp:1013:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1013 | for (int i=0; i' -CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -CXXCoord.h:43:16: note: remove the '< >' -CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -CXXCoord.h:49:16: note: remove the '< >' -CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -CXXCoord.h:52:16: note: remove the '< >' CXXSurface.cpp:1015:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1015 | for (int j=0; j::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1031 | for (int i=0; i&)': -CXXSphereElement.cpp:673:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 673 | for (int i=0; i() { | ^ @@ -5763,10 +5799,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXQADSurfaceStaticData.cpp -fPIC -DPIC -o .libs/CXXQADSurfaceStaticData.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXFFTSolventMap.lo CXXFFTSolventMap.cpp -In file included from CXXTorusNode.h:27, - from CXXTorusNode.cpp:25: +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSpace.lo CXXSpace.cpp +In file included from CXXSurfaceVertex.h:26, + from CXXQADSurfaceStaticData.cpp:24: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -5783,16 +5818,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXCreator.cpp -fPIC -DPIC -o .libs/CXXCreator.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSpace.cpp -fPIC -DPIC -o .libs/CXXSpace.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXChargeTable.lo CXXChargeTable.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXException.lo CXXException.cpp -CXXCreator.cpp:803:2: warning: #warning Compiling for OMP [-Wcpp] - 803 | #warning Compiling for OMP - | ^~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXFFTSolventMap.cpp -fPIC -DPIC -o .libs/CXXFFTSolventMap.o In file included from CXXSurfaceVertex.h:26, - from CXXQADSurfaceStaticData.cpp:24: + from CXXTriangle.h:27, + from CXXTriangle.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -5809,7 +5837,10 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXUtils.lo CXXUtils.cpp +CXXCreator.cpp:803:2: warning: #warning Compiling for OMP [-Wcpp] + 803 | #warning Compiling for OMP + | ^~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXFFTSolventMap.lo CXXFFTSolventMap.cpp In file included from CXXSurfaceVertex.h:26, from CXXQADSurface.cpp:24: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5828,8 +5859,11 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXBall.lo CXXBall.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSurfaceMaker.lo CXXSurfaceMaker.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSpace.cpp -fPIC -DPIC -o .libs/CXXSpace.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXChargeTable.lo CXXChargeTable.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXFFTSolventMap.cpp -fPIC -DPIC -o .libs/CXXFFTSolventMap.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXException.lo CXXException.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXChargeTable.cpp -fPIC -DPIC -o .libs/CXXChargeTable.o In file included from CXXCreator.h:41, from CXXCreator.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5848,6 +5882,30 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXUtils.lo CXXUtils.cpp +CXXFFTSolventMap.cpp: In constructor 'SolventMap::SolventMap(fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real)': +CXXFFTSolventMap.cpp:32:25: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] + 32 | if (probeRadius < 0 | gridSpacing < 0) { + | ~~~~~~~~~~~~^~~ +CXXFFTSolventMap.cpp: In member function 'int SolventMap::convoluteSolidProbe(fftw_real, int, int, float)': +CXXFFTSolventMap.cpp:361:22: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] + 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { + | ~~~~~~~~~^~~~ +CXXFFTSolventMap.cpp:361:59: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] + 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { + | ~~~~~~~~~~~~~~~^~~~ +CXXFFTSolventMap.cpp:361:72: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] + 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { + | ~~~~~~^~~~ +CXXFFTSolventMap.cpp: In member function 'int SolventMap::dumpXSlice(int, int, int)': +CXXFFTSolventMap.cpp:743:21: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] + 743 | if (SliceNr > dim[0] | SliceNr < 1) { + | ~~~~~~~~^~~~~~~~ +CXXQADSurface.cpp: In member function 'int CXXQADSurface::contourMap(double)': +CXXQADSurface.cpp:599:75: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 599 | iCompare >=compareStart && !iEquivalent; + | ~~~~~~~~~^~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXException.cpp -fPIC -DPIC -o .libs/CXXException.o In file included from CXXSpace.h:25, from CXXSpace.cpp:25: CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5866,8 +5924,8 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXChargeTable.cpp -fPIC -DPIC -o .libs/CXXChargeTable.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXException.cpp -fPIC -DPIC -o .libs/CXXException.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXUtils.cpp -fPIC -DPIC -o .libs/CXXUtils.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXBall.lo CXXBall.cpp CXXSpace.cpp: In constructor 'CXXSpace::CXXSpace(float, float, float, float, float, float, float, float)': CXXSpace.cpp:51:67: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 51 | if (chargeGrid == 0 | potentialGrid == 0 | dielGrid == 0) { @@ -5995,25 +6053,6 @@ CXXSpace.cpp:631:65: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 631 | break; | ^~~~~ -CXXFFTSolventMap.cpp: In constructor 'SolventMap::SolventMap(fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real, fftw_real)': -CXXFFTSolventMap.cpp:32:25: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] - 32 | if (probeRadius < 0 | gridSpacing < 0) { - | ~~~~~~~~~~~~^~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXUtils.cpp -fPIC -DPIC -o .libs/CXXUtils.o -CXXFFTSolventMap.cpp: In member function 'int SolventMap::convoluteSolidProbe(fftw_real, int, int, float)': -CXXFFTSolventMap.cpp:361:22: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] - 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { - | ~~~~~~~~~^~~~ -CXXFFTSolventMap.cpp:361:59: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] - 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { - | ~~~~~~~~~~~~~~~^~~~ -CXXFFTSolventMap.cpp:361:72: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] - 361 | if (FFTProbe == 0 | FFTGrid == 0 | FourierScratch == 0 | Probe == 0) { - | ~~~~~~^~~~ -CXXFFTSolventMap.cpp: In member function 'int SolventMap::dumpXSlice(int, int, int)': -CXXFFTSolventMap.cpp:743:21: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] - 743 | if (SliceNr > dim[0] | SliceNr < 1) { - | ~~~~~~~~^~~~~~~~ CXXCreator.cpp: In member function 'int CXXCreator::distributeAtomCharge(CXXCoord, CXXCoord, CXXCoord, CXXCoord, int)': CXXCreator.cpp:261:28: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] 261 | if (distanceVector.x() < 0 | distanceVector.y() < 0 | distanceVector.z() < 0) { @@ -6072,17 +6111,14 @@ 812 | if (((i+j+k)%2) == (n%2)) { | ~~~~~~~~~~~~^~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXBall.cpp -fPIC -DPIC -o .libs/CXXBall.o -CXXQADSurface.cpp: In member function 'int CXXQADSurface::contourMap(double)': -CXXQADSurface.cpp:599:75: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 599 | iCompare >=compareStart && !iEquivalent; - | ~~~~~~~~~^~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurfaceMaker.cpp -fPIC -DPIC -o .libs/CXXSurfaceMaker.o CXXBall.cpp:87:2: warning: #warning Compiling for OMP [-Wcpp] 87 | #warning Compiling for OMP | ^~~~~~~ CXXBall.cpp:157:2: warning: #warning Compiling for OMP [-Wcpp] 157 | #warning Compiling for OMP | ^~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o CXXSurfaceMaker.lo CXXSurfaceMaker.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXSurfaceMaker.cpp -fPIC -DPIC -o .libs/CXXSurfaceMaker.o CXXSurfaceMaker.cpp:431:2: warning: #warning Compiling for OMP [-Wcpp] 431 | #warning Compiling for OMP | ^~~~~~~ @@ -6191,7 +6227,7 @@ CXXSurfaceMaker.cpp:571:47: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 571 | for (int iChildSurface = 0; iChildSurface < childSurfaces.size(); iChildSurface++) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libMoleculesToTrianglesCXXSurface.la -rpath /usr/lib/aarch64-linux-gnu CXXCircle.lo CXXCircleNode.lo CXXCoord.lo CXXFortranFile.lo CXXNewHood.lo CXXSphereElement.lo CXXSphereNode.lo CXXSphereTriangle.lo CXXSphereTriangleEdge.lo CXXSurface.lo CXXSurfaceVertex.lo CXXTorusElement.lo CXXTorusNode.lo CXXTriangle.lo CXXQADSurface.lo CXXQADSurfaceStaticData.lo CXXCreator.lo CXXSpace.lo CXXFFTSolventMap.lo CXXChargeTable.lo CXXException.lo CXXUtils.lo CXXBall.lo CXXSurfaceMaker.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsrfftw -lsfftw -lmmdb2 +/bin/sh ../../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libMoleculesToTrianglesCXXSurface.la -rpath /usr/lib/aarch64-linux-gnu CXXCircle.lo CXXCircleNode.lo CXXCoord.lo CXXFortranFile.lo CXXNewHood.lo CXXSphereElement.lo CXXSphereNode.lo CXXSphereTriangle.lo CXXSphereTriangleEdge.lo CXXSurface.lo CXXSurfaceVertex.lo CXXTorusElement.lo CXXTorusNode.lo CXXTriangle.lo CXXQADSurface.lo CXXQADSurfaceStaticData.lo CXXCreator.lo CXXSpace.lo CXXFFTSolventMap.lo CXXChargeTable.lo CXXException.lo CXXUtils.lo CXXBall.lo CXXSurfaceMaker.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsrfftw -lsfftw -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/CXXCircle.o .libs/CXXCircleNode.o .libs/CXXCoord.o .libs/CXXFortranFile.o .libs/CXXNewHood.o .libs/CXXSphereElement.o .libs/CXXSphereNode.o .libs/CXXSphereTriangle.o .libs/CXXSphereTriangleEdge.o .libs/CXXSurface.o .libs/CXXSurfaceVertex.o .libs/CXXTorusElement.o .libs/CXXTorusNode.o .libs/CXXTriangle.o .libs/CXXQADSurface.o .libs/CXXQADSurfaceStaticData.o .libs/CXXCreator.o .libs/CXXSpace.o .libs/CXXFFTSolventMap.o .libs/CXXChargeTable.o .libs/CXXException.o .libs/CXXUtils.o .libs/CXXBall.o .libs/CXXSurfaceMaker.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lsrfftw -lsfftw -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXSurface.so.0 -o .libs/libMoleculesToTrianglesCXXSurface.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.so.0" && ln -s "libMoleculesToTrianglesCXXSurface.so.0.0.0" "libMoleculesToTrianglesCXXSurface.so.0") libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXSurface.so" && ln -s "libMoleculesToTrianglesCXXSurface.so.0.0.0" "libMoleculesToTrianglesCXXSurface.so") @@ -6199,33 +6235,33 @@ make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' Making all in CXXClasses make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo `test -f 'AtomPropertyRampColorRule.cpp' || echo './'`AtomPropertyRampColorRule.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo `test -f 'DirectedPositionedEntity.cpp' || echo './'`DirectedPositionedEntity.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Representation.lo `test -f 'Representation.cpp' || echo './'`Representation.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo `test -f 'BallsPrimitive.cpp' || echo './'`BallsPrimitive.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo `test -f 'DiscreteSegment.cpp' || echo './'`DiscreteSegment.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo `test -f 'RepresentationInstance.cpp' || echo './'`RepresentationInstance.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo `test -f 'BondsPrimitive.cpp' || echo './'`BondsPrimitive.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo `test -f 'DisplayPrimitive.cpp' || echo './'`DisplayPrimitive.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo `test -f 'RotatedTranslatedScaledEntity.cpp' || echo './'`RotatedTranslatedScaledEntity.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ 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1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Representation.lo `test -f 'Representation.cpp' || echo './'`Representation.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo `test -f 'BallsPrimitive.cpp' || echo './'`BallsPrimitive.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo `test -f 'DiscreteSegment.cpp' || echo './'`DiscreteSegment.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo `test -f 'RepresentationInstance.cpp' || echo './'`RepresentationInstance.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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"-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Representation.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BallsPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BondsPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c RepresentationInstance.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Light.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DisplayPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c RotatedTranslatedScaledEntity.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DiscreteSegment.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BondsPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c AtomPropertyRampColorRule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c BoxSectionPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o -In file included from DisplayPrimitive.h:32, - from Representation.h:36, - from Representation.cpp:33: +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Light.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CXXMatrix.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o +In file included from PositionedEntity.h:28, + from DirectedPositionedEntity.h:28, + from DirectedPositionedEntity.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6236,9 +6272,9 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd -In file included from ColorRule.h:29, - from AtomPropertyRampColorRule.h:27, - from AtomPropertyRampColorRule.cpp:25: +In file included from DisplayPrimitive.h:32, + from Representation.h:36, + from Representation.cpp:33: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6249,8 +6285,10 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd -In file included from RotatedTranslatedScaledEntity.h:28, - from RotatedTranslatedScaledEntity.cpp:25: +In file included from DisplayPrimitive.h:32, + from VertexColorNormalPrimitive.h:27, + from BallsPrimitive.h:33, + from BallsPrimitive.cpp:28: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6261,9 +6299,8 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd -In file included from PositionedEntity.h:28, - from DirectedPositionedEntity.h:28, - from DirectedPositionedEntity.cpp:25: +In file included from RotatedTranslatedScaledEntity.h:28, + from RotatedTranslatedScaledEntity.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6274,9 +6311,9 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd -In file included from RotatedTranslatedScaledEntity.h:28, - from Light.h:29, - from Light.cpp:25: +In file included from ColorRule.h:29, + from AtomPropertyRampColorRule.h:27, + from AtomPropertyRampColorRule.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6287,9 +6324,12 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd -In file included from RotatedTranslatedScaledEntity.h:28, - from RepresentationInstance.h:32, - from RepresentationInstance.cpp:25: +In file included from CXXMatrix.h:28, + from CXXMatrix.cpp:24: +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 40 | #pragma omp simd +In file included from DisplayPrimitive.h:32, + from DisplayPrimitive.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6300,12 +6340,6 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd -In file included from DisplayPrimitive.h:32, - from VertexColorNormalPrimitive.h:27, - from BallsPrimitive.h:33, - from BallsPrimitive.cpp:28: -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6314,8 +6348,16 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd -In file included from CXXMatrix.h:28, - from CXXMatrix.cpp:24: +In file included from DisplayPrimitive.h:32, + from VertexColorNormalPrimitive.h:27, + from CylindersPrimitive.h:29, + from BoxSectionPrimitive.h:31, + from BoxSectionPrimitive.cpp:32: +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 40 | #pragma omp simd +In file included from RotatedTranslatedScaledEntity.h:28, + from Light.h:29, + from Light.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6326,11 +6368,6 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd -In file included from DisplayPrimitive.h:32, - from BondsPrimitive.h:28, - from BondsPrimitive.cpp:25: -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6339,8 +6376,9 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd -In file included from DisplayPrimitive.h:32, - from DisplayPrimitive.cpp:25: +In file included from RotatedTranslatedScaledEntity.h:28, + from RepresentationInstance.h:32, + from RepresentationInstance.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6356,13 +6394,6 @@ from DiscreteSegment.cpp:26: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd -In file included from DisplayPrimitive.h:32, - from VertexColorNormalPrimitive.h:27, - from CylindersPrimitive.h:29, - from BoxSectionPrimitive.h:31, - from BoxSectionPrimitive.cpp:32: -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6371,6 +6402,11 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd +In file included from DisplayPrimitive.h:32, + from BondsPrimitive.h:28, + from BondsPrimitive.cpp:25: +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 44 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6382,22 +6418,6 @@ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ @@ -6411,6 +6431,7 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo `test -f 'MolecularRepresentation.cpp' || echo './'`MolecularRepresentation.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -6443,7 +6464,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo `test -f 'MolecularRepresentation.cpp' || echo './'`MolecularRepresentation.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -6476,10 +6496,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo `test -f 'SecondaryColorScheme.cpp' || echo './'`SecondaryColorScheme.cpp -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -6496,7 +6512,16 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo `test -f 'MyMolecule.cpp' || echo './'`MyMolecule.cpp +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +In file included from oglPolyhedron.h:29, + from SpherePrimitive.h:30, + from Representation.cpp:36: +Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': +Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 58 | if (indices.size() != indexCount) indices.resize(indexCount); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ @@ -6510,7 +6535,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo `test -f 'SolidColorRule.cpp' || echo './'`SolidColorRule.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -6543,41 +6567,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -DiscreteSegment.cpp: In member function 'void DiscreteSegment::evaluateNormals()': -DiscreteSegment.cpp:44:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 44 | for (int i=1; i<(calphas.size()-1); i++){ - | ~^~~~~~~~~~~~~~~~~~~ -DiscreteSegment.cpp: In member function 'void DiscreteSegment::smoothBetas()': -DiscreteSegment.cpp:83:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 83 | for (int iCalpha=0; iCalpha::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 88 | && iCalpha+nInStrand < calphas.size()){ - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -DiscreteSegment.cpp:98:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 98 | if (iCalpha+nInStrand < calphas.size()){ - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -BoxSectionPrimitive.cpp: In member function 'virtual void BoxSectionPrimitive::generateArrays()': -BoxSectionPrimitive.cpp:72:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 72 | for (int i=0; i< points.size(); i++){ - | ~^~~~~~~~~~~~~~~ -DiscreteSegment.cpp: In member function 'void DiscreteSegment::evaluateSplines()': -DiscreteSegment.cpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 135 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 105 | for (int i=0; i< points.size()-1; i++){ - | ~^~~~~~~~~~~~~~~~~ -In file included from oglPolyhedron.h:29, - from SpherePrimitive.h:30, - from Representation.cpp:36: -Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': -Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 58 | if (indices.size() != indexCount) indices.resize(indexCount); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -6594,6 +6583,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ @@ -6613,6 +6605,9 @@ Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 58 | if (indices.size() != indexCount) indices.resize(indexCount); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MolecularRepresentation.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo `test -f 'SecondaryColorScheme.cpp' || echo './'`SecondaryColorScheme.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo `test -f 'MyMolecule.cpp' || echo './'`MyMolecule.cpp BallsPrimitive.cpp: In member function 'virtual void BallsPrimitive::generateArrays()': BallsPrimitive.cpp:96:39: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 96 | for (int iVertex = 0; iVertex < ((Polyhedron *)poly)->nVertices(); iVertex++){ @@ -6620,12 +6615,47 @@ BallsPrimitive.cpp:110:35: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 110 | for (int iFace = 0; iFace < ((Polyhedron *)poly)->nFaces(); iFace++){ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MolecularRepresentation.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-ColorRule.lo `test -f 'ColorRule.cpp' || echo './'`ColorRule.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SolidColorRule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SecondaryColorScheme.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MyMolecule.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-NRStuff.lo `test -f 'NRStuff.cpp' || echo './'`NRStuff.cpp +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +BoxSectionPrimitive.cpp: In member function 'virtual void BoxSectionPrimitive::generateArrays()': +BoxSectionPrimitive.cpp:72:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 72 | for (int i=0; i< points.size(); i++){ + | ~^~~~~~~~~~~~~~~ +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +BoxSectionPrimitive.cpp:105:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 105 | for (int i=0; i< points.size()-1; i++){ + | ~^~~~~~~~~~~~~~~~~ +DiscreteSegment.cpp: In member function 'void DiscreteSegment::evaluateNormals()': +DiscreteSegment.cpp:44:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 44 | for (int i=1; i<(calphas.size()-1); i++){ + | ~^~~~~~~~~~~~~~~~~~~ +DiscreteSegment.cpp: In member function 'void DiscreteSegment::smoothBetas()': +DiscreteSegment.cpp:83:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 83 | for (int iCalpha=0; iCalpha::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 88 | && iCalpha+nInStrand < calphas.size()){ + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +DiscreteSegment.cpp:98:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 98 | if (iCalpha+nInStrand < calphas.size()){ + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +DiscreteSegment.cpp: In member function 'void DiscreteSegment::evaluateSplines()': +DiscreteSegment.cpp:135:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 135 | for (int i=0; i() { - | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ColorScheme.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o In file included from NRStuff.h:31, from NRStuff.cpp:29: @@ -6726,7 +6747,6 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo `test -f 'CompoundSelection.cpp' || echo './'`CompoundSelection.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -6743,6 +6763,23 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Polyhedron.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o +In file included from DisplayPrimitive.h:32, + from SpherePrimitive.h:29, + from SpherePrimitive.cpp:25: +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 40 | #pragma omp simd +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 44 | #pragma omp simd +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 57 | #pragma omp simd +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 65 | #pragma omp simd +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 73 | #pragma omp simd +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo `test -f 'PositionedEntity.cpp' || echo './'`PositionedEntity.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SticksPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo `test -f 'SurfacePrimitive.cpp' || echo './'`SurfacePrimitive.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -6759,6 +6796,20 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CompoundSelection.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o +In file included from ColorRule.h:29, + from ColorScheme.h:32, + from ColorScheme.cpp:25: +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 40 | #pragma omp simd +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 44 | #pragma omp simd +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 57 | #pragma omp simd +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 65 | #pragma omp simd +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 73 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -6775,10 +6826,15 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo `test -f 'PositionedEntity.cpp' || echo './'`PositionedEntity.cpp +In file included from MyMolecule.h:28, + from CompoundSelection.h:35, + from CompoundSelection.cpp:25: +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 40 | #pragma omp simd In file included from DisplayPrimitive.h:32, - from SpherePrimitive.h:29, - from SpherePrimitive.cpp:25: + from VertexColorNormalPrimitive.h:27, + from SticksPrimitive.h:31, + from SticksPrimitive.cpp:28: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -6789,20 +6845,6 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Polyhedron.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o -In file included from MolecularRepresentation.cpp:28: -DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': -DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] - 41 | for (int i=0; i() { - | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from oglPolyhedron.h:29, - from SpherePrimitive.h:30, - from MolecularRepresentation.cpp:29: -Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': -Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 58 | if (indices.size() != indexCount) indices.resize(indexCount); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -ColorScheme.h:95:23: warning: 'virtual FCXXCoord ColorScheme::colorForAtom(const mmdb::Atom*, std::map, int>&)' was hidden [-Woverloaded-virtual=] - 95 | virtual FCXXCoord colorForAtom(const mmdb::Atom* atom, std::map, int> &handles){ - | ^~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SticksPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o -SecondaryColorScheme.h:52:23: note: by 'virtual FCXXCoord SecondaryColorScheme::colorForAtom(mmdb::Atom*)' - 52 | virtual FCXXCoord colorForAtom(mmdb::Atom* atom){ - | ^~~~~~~~~~~~ -In file included from MyMolecule.cpp:36: +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c PositionedEntity.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o +In file included from MolecularRepresentation.cpp:28: DishyBase.h: In constructor 'DishyPlaneLSQ_t::DishyPlaneLSQ_t(const std::vector >&)': DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 41 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 542 | for (int iSegment = 0; iSegment < segments.size(); iSegment++){ - | ~~~~~~~~~^~~~~~~~~~~~~~~~~ -MolecularRepresentation.cpp: In member function 'int MolecularRepresentation::drawCalphas()': -MolecularRepresentation.cpp:740:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 740 | for (int iSegment = 0; iSegment < segments.size(); iSegment++){ - | ~~~~~~~~~^~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c PositionedEntity.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o +In file included from oglPolyhedron.h:29, + from SpherePrimitive.h:30, + from MolecularRepresentation.cpp:29: +Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': +Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 58 | if (indices.size() != indexCount) indices.resize(indexCount); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SurfacePrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -6890,34 +6898,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo `test -f 'CylinderPoint.cpp' || echo './'`CylinderPoint.cpp -In file included from MyMolecule.h:28, - from CompoundSelection.h:35, - from CompoundSelection.cpp:25: -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 40 | #pragma omp simd -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 44 | #pragma omp simd -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 57 | #pragma omp simd -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 65 | #pragma omp simd -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 73 | #pragma omp simd -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c SurfacePrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Renderer.lo `test -f 'Renderer.cpp' || echo './'`Renderer.cpp -In file included from PositionedEntity.h:28, - from PositionedEntity.cpp:25: -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 40 | #pragma omp simd -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 44 | #pragma omp simd -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 57 | #pragma omp simd -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 65 | #pragma omp simd -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 73 | #pragma omp simd In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from SurfacePrimitive.h:28, @@ -6948,17 +6928,10 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from oglPolyhedron.h:29, - from SpherePrimitive.h:30: -Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': -Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 58 | if (indices.size() != indexCount) indices.resize(indexCount); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c CylinderPoint.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ @@ -6971,35 +6944,20 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Renderer.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o -In file included from CylinderPoint.h:29, - from CylinderPoint.cpp:28: -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 40 | #pragma omp simd -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 44 | #pragma omp simd -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 57 | #pragma omp simd -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 65 | #pragma omp simd -../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] - 73 | #pragma omp simd -ColorScheme.cpp: In static member function 'static std::shared_ptr ColorScheme::colorRampChainsScheme()': -ColorScheme.cpp:61:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 61 | for (int i=0; i >&)': +DishyBase.h:41:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] + 41 | for (int i=0; i, int>&)' was hidden [-Woverloaded-virtual=] + 95 | virtual FCXXCoord colorForAtom(const mmdb::Atom* atom, std::map, int> &handles){ + | ^~~~~~~~~~~~ +SecondaryColorScheme.h:52:23: note: by 'virtual FCXXCoord SecondaryColorScheme::colorForAtom(mmdb::Atom*)' + 52 | virtual FCXXCoord colorForAtom(mmdb::Atom* atom){ + | ^~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -7016,6 +6974,12 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from oglPolyhedron.h:29, + from SpherePrimitive.h:30: +Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': +Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 58 | if (indices.size() != indexCount) indices.resize(indexCount); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -7032,8 +6996,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo `test -f 'VertexColorNormalPrimitive.cpp' || echo './'`VertexColorNormalPrimitive.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo `test -f 'CylindersPrimitive.cpp' || echo './'`CylindersPrimitive.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -7050,20 +7012,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo `test -f 'oglPolyhedron.cpp' || echo './'`oglPolyhedron.cpp -CompoundSelection.cpp: In destructor 'CompoundSelection::~CompoundSelection()': -CompoundSelection.cpp:36:13: warning: deleting object of polymorphic class type 'CompoundSelection' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] - 36 | delete p; - | ^~~~~~~~ -CompoundSelection.cpp:39:13: warning: deleting object of polymorphic class type 'MMDBStringPrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] - 39 | delete p; - | ^~~~~~~~ -CompoundSelection.cpp:42:13: warning: deleting object of polymorphic class type 'MMDBSecondaryTypePrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] - 42 | delete p; - | ^~~~~~~~ -CompoundSelection.cpp:45:13: warning: deleting object of polymorphic class type 'MMDBSubsetTypePrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] - 45 | delete p; - | ^~~~~~~~ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -7096,6 +7044,28 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +CompoundSelection.cpp: In destructor 'CompoundSelection::~CompoundSelection()': +CompoundSelection.cpp:36:13: warning: deleting object of polymorphic class type 'CompoundSelection' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] + 36 | delete p; + | ^~~~~~~~ +CompoundSelection.cpp:39:13: warning: deleting object of polymorphic class type 'MMDBStringPrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] + 39 | delete p; + | ^~~~~~~~ +CompoundSelection.cpp:42:13: warning: deleting object of polymorphic class type 'MMDBSecondaryTypePrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] + 42 | delete p; + | ^~~~~~~~ +CompoundSelection.cpp:45:13: warning: deleting object of polymorphic class type 'MMDBSubsetTypePrimitive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] + 45 | delete p; + | ^~~~~~~~ +MolecularRepresentation.cpp: In member function 'int MolecularRepresentation::drawRibbon()': +MolecularRepresentation.cpp:542:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 542 | for (int iSegment = 0; iSegment < segments.size(); iSegment++){ + | ~~~~~~~~~^~~~~~~~~~~~~~~~~ +MolecularRepresentation.cpp: In member function 'int MolecularRepresentation::drawCalphas()': +MolecularRepresentation.cpp:740:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 740 | for (int iSegment = 0; iSegment < segments.size(); iSegment++){ + | ~~~~~~~~~^~~~~~~~~~~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo `test -f 'CylinderPoint.cpp' || echo './'`CylinderPoint.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -7112,13 +7082,43 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo `test -f 'MolecularRepresentationInstance.cpp' || echo './'`MolecularRepresentationInstance.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Renderer.lo `test -f 'Renderer.cpp' || echo './'`Renderer.cpp +ColorScheme.cpp: In static member function 'static std::shared_ptr ColorScheme::colorRampChainsScheme()': +ColorScheme.cpp:61:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 61 | for (int i=0; i, SurfaceType, float, float)': +SurfacePrimitive.cpp:145:42: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 145 | for (int iVertex = 0; iVertex, SurfaceType, float, float)': -SurfacePrimitive.cpp:145:42: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 145 | for (int iVertex = 0; iVertex() { + | ^ +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from Polyhedron.h:32, + from oglPolyhedron.h:29, + from oglPolyhedron.cpp:25: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 40 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -7200,6 +7202,7 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo `test -f 'MolecularRepresentationInstance.cpp' || echo './'`MolecularRepresentationInstance.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -7216,24 +7219,7 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': -Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 58 | if (indices.size() != indexCount) indices.resize(indexCount); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -oglPolyhedron.cpp: In member function 'virtual void oglPolyhedron::generateArrays()': -oglPolyhedron.cpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 48 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 57 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 63 | for (int i=0; i() { | ^ @@ -7250,6 +7236,8 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c MolecularRepresentationInstance.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Vector2.lo `test -f 'Vector2.cpp' || echo './'`Vector2.cpp CylindersPrimitive.cpp: In member function 'virtual void CylindersPrimitive::generateArrays()': CylindersPrimitive.cpp:85:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 85 | for (int i=0; i< points.size(); i++){ @@ -7257,8 +7245,22 @@ CylindersPrimitive.cpp:113:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 113 | for (int i=0; i< points.size()-1; i++){ | ~^~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Quaternion.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o +In file included from MyMolecule.h:28, + from MolecularRepresentation.h:32, + from MolecularRepresentationInstance.h:30, + from MolecularRepresentationInstance.cpp:25: +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 40 | #pragma omp simd +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:44: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 44 | #pragma omp simd +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:57: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 57 | #pragma omp simd +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:65: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 65 | #pragma omp simd +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] + 73 | #pragma omp simd libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Vector2.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-Vector3.lo `test -f 'Vector3.cpp' || echo './'`Vector3.cpp ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -7275,13 +7277,46 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o libMoleculesToTrianglesCXXClasses_la-lfit.lo `test -f 'lfit.c' || echo './'`lfit.c +Polyhedron.h: In constructor 'PolyhedronFace::PolyhedronFace(int, int*)': +Polyhedron.h:58:36: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 58 | if (indices.size() != indexCount) indices.resize(indexCount); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +oglPolyhedron.cpp: In member function 'virtual void oglPolyhedron::generateArrays()': +oglPolyhedron.cpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 48 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 57 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 63 | for (int i=0; i() { + | ^ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DishyBase.lo `test -f 'DishyBase.cpp' || echo './'`DishyBase.cpp +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Vector3.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-DishyBase.lo `test -f 'DishyBase.cpp' || echo './'`DishyBase.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo `test -f 'FlatFanPrimitive.cpp' || echo './'`FlatFanPrimitive.cpp libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c lfit.c -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c DishyBase.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c FlatFanPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo `test -f 'FlatFanPrimitive.cpp' || echo './'`FlatFanPrimitive.cpp In file included from DishyBase.h:31, from DishyBase.cpp:23: ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:40: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -7294,6 +7329,7 @@ 65 | #pragma omp simd ../../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I../.. -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c FlatFanPrimitive.cpp -fPIC -DPIC -o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o In file included from DisplayPrimitive.h:32, from VertexColorNormalPrimitive.h:27, from FlatFanPrimitive.h:29, @@ -7363,7 +7399,7 @@ MyMolecule.cpp:101:25: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 6 bytes from a string of length 195 [-Wstringop-truncation] 101 | strncpy (field, tokenBuffer+60, 6); | ^ -/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libMoleculesToTrianglesCXXClasses.la -rpath /usr/lib/aarch64-linux-gnu libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-Representation.lo libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo libMoleculesToTrianglesCXXClasses_la-Light.lo libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo libMoleculesToTrianglesCXXClasses_la-ColorRule.lo libMoleculesToTrianglesCXXClasses_la-NRStuff.lo libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo libMoleculesToTrianglesCXXClasses_la-Renderer.lo libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-Quaternion.lo libMoleculesToTrianglesCXXClasses_la-Vector2.lo libMoleculesToTrianglesCXXClasses_la-Vector3.lo libMoleculesToTrianglesCXXClasses_la-lfit.lo libMoleculesToTrianglesCXXClasses_la-DishyBase.lo libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo ../../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 +/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libMoleculesToTrianglesCXXClasses.la -rpath /usr/lib/aarch64-linux-gnu libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-Representation.lo libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo libMoleculesToTrianglesCXXClasses_la-Light.lo libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo libMoleculesToTrianglesCXXClasses_la-ColorRule.lo libMoleculesToTrianglesCXXClasses_la-NRStuff.lo libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo libMoleculesToTrianglesCXXClasses_la-Renderer.lo libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-Quaternion.lo libMoleculesToTrianglesCXXClasses_la-Vector2.lo libMoleculesToTrianglesCXXClasses_la-Vector3.lo libMoleculesToTrianglesCXXClasses_la-lfit.lo libMoleculesToTrianglesCXXClasses_la-DishyBase.lo libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo ../../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o .libs/libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/.libs -L/usr/lib/aarch64-linux-gnu ../../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXClasses.so.0 -o .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.so.0" && ln -s "libMoleculesToTrianglesCXXClasses.so.0.0.0" "libMoleculesToTrianglesCXXClasses.so.0") libtool: link: (cd ".libs" && rm -f "libMoleculesToTrianglesCXXClasses.so" && ln -s "libMoleculesToTrianglesCXXClasses.so.0.0.0" "libMoleculesToTrianglesCXXClasses.so") @@ -7375,25 +7411,25 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles' Making all in pli make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-ligand-interactions.lo protein-ligand-interactions.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flev-annotations.lo flev-annotations.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pi-stacking.lo pi-stacking.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sdf-interface.lo sdf-interface.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein-ligand-interactions.lo protein-ligand-interactions.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flev-annotations.lo flev-annotations.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pi-stacking.lo pi-stacking.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sdf-interface.lo sdf-interface.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flev-annotations.cc -fPIC -DPIC -o .libs/flev-annotations.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-ligand-interactions.cc -fPIC -DPIC -o .libs/protein-ligand-interactions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pi-stacking.cc -fPIC -DPIC -o .libs/pi-stacking.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sdf-interface.cc -fPIC -DPIC -o .libs/sdf-interface.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein-ligand-interactions.cc -fPIC -DPIC -o .libs/protein-ligand-interactions.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/python3.13 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flev-annotations.cc -fPIC -DPIC -o .libs/flev-annotations.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, - from pi-stacking.cc:34: + from sdf-interface-for-export.hh:31, + from sdf-interface.cc:49: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, - from sdf-interface-for-export.hh:31, - from sdf-interface.cc:49: + from pi-stacking.cc:34: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -7420,7 +7456,7 @@ sdf-interface.cc:409:24: note: 'v' declared here 409 | clipper::Coord_orth v; | ^ -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-pli.la -rpath /usr/lib/aarch64-linux-gnu protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo sdf-interface.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-pli.la -rpath /usr/lib/aarch64-linux-gnu protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo sdf-interface.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/protein-ligand-interactions.o .libs/flev-annotations.o .libs/pi-stacking.o .libs/sdf-interface.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs ../coot-utils/.libs/libcoot-coord-utils.so ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-pli.so.0 -o .libs/libcoot-pli.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-pli.so.0" && ln -s "libcoot-pli.so.0.0.0" "libcoot-pli.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-pli.so" && ln -s "libcoot-pli.so.0.0.0" "libcoot-pli.so") @@ -7436,19 +7472,19 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python-tests' Making all in cootilus make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall 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"-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-ss-find.cpp -fPIC -DPIC -o .libs/nautilus-ss-find.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-target.cpp -fPIC -DPIC -o .libs/nautilus-target.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-tools.cpp -fPIC -DPIC -o .libs/nautilus-tools.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cootilus-build.cpp -fPIC -DPIC -o .libs/cootilus-build.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nucleicacid_db.cpp -fPIC -DPIC -o .libs/nucleicacid_db.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c nautilus-join.cpp -fPIC -DPIC -o .libs/nautilus-join.o -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootilus.la -rpath /usr/lib/aarch64-linux-gnu nucleicacid_db.lo nautilus-tools.lo nautilus-ss-find.lo nautilus-join.lo nautilus-target.lo cootilus-build.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootilus.la -rpath /usr/lib/aarch64-linux-gnu nucleicacid_db.lo nautilus-tools.lo nautilus-ss-find.lo nautilus-join.lo nautilus-target.lo cootilus-build.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/nucleicacid_db.o .libs/nautilus-tools.o .libs/nautilus-ss-find.o .libs/nautilus-join.o .libs/nautilus-target.o .libs/cootilus-build.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcootilus.so.0 -o .libs/libcootilus.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcootilus.so.0" && ln -s "libcootilus.so.0.0.0" "libcootilus.so.0") libtool: link: (cd ".libs" && rm -f "libcootilus.so" && ln -s "libcootilus.so.0.0.0" "libcootilus.so") @@ -7456,21 +7492,21 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' Making all in pyrogen make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mmff-restraints.lo mmff-restraints.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o py-restraints.lo py-restraints.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 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-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o atom_types.lo atom_types.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o mmff-restraints.lo mmff-restraints.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit 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-DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c py-restraints.cc -fPIC -DPIC -o .libs/py-restraints.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c restraints-boost.cc -fPIC -DPIC -o .libs/restraints-boost.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pyrogen-swig.lo pyrogen-swig.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pyrogen-swig.lo pyrogen-swig.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -pthread -I/usr/include -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -I/usr/include/python3.13 -DMAKE_ENHANCED_LIGAND_TOOLS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pyrogen-swig.cc -fPIC -DPIC -o .libs/pyrogen-swig.o In file included from cairo-molecule.hh:34, from cairo-molecule.cc:27: @@ -7498,15 +7534,6 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../lidia-core/rdkit-interface.hh:29, - from ../pyrogen/restraints-private.hh:33, - from ../pyrogen/restraints.hh:39, - from pyrogen-swig.cc:5383: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ ../lidia-core/lig-build.hh: In instantiation of 'std::pair lig_build::molecule_t::ligand_extents() const [with Ta = coot::cairo_atom_t; Tb = coot::cairo_bond_t]': cairo-molecule.cc:687:70: required from here 687 | std::pair ext = ligand_extents(); @@ -7514,19 +7541,11 @@ ../lidia-core/lig-build.hh:1503:7: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1503 | ligand_extents() const { | ^~~~~~~~~~~~~~ -In file included from ../ideal/simple-restraint.hh:162, - from restraints-boost.cc:35: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, - from restraints-boost.cc:37: + from ../pyrogen/restraints-private.hh:33, + from ../pyrogen/restraints.hh:39, + from pyrogen-swig.cc:5383: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -7535,41 +7554,58 @@ from ../lidia-core/rdkit-interface.hh:29, from restraints-private.hh:33, from restraints.hh:39, - from py-restraints.cc:30: + from restraints.cc:26: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from restraints.cc:29: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from restraints-private.hh:33, from restraints.hh:39, - from restraints.cc:26: + from py-restraints.cc:30: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from restraints.cc:29: +In file included from ../ideal/simple-restraint.hh:162, + from restraints-boost.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from restraints.cc:34: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../lidia-core/rdkit-interface.hh:29, + from restraints-boost.cc:37: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../geometry/.libs/libcoot-geometry.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo 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-DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-colour.cc -fPIC -DPIC -o .libs/coot-colour.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule.cc -fPIC -DPIC -o .libs/coot-molecule.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container.cc -fPIC -DPIC -o .libs/molecules-container.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-bonds.cc -fPIC -DPIC -o .libs/coot-molecule-bonds.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c colour-functions.cc -fPIC -DPIC -o .libs/colour-functions.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-modelling.cc -fPIC -DPIC -o .libs/molecules-container-modelling.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-maps.cc -fPIC -DPIC -o .libs/coot-molecule-maps.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 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coot-molecule-validation.cc -fPIC -DPIC -o .libs/coot-molecule-validation.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-a-dodec.cc -fPIC -DPIC -o .libs/make-a-dodec.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-ligand-fitting.lo molecules-container-ligand-fitting.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container.cc -fPIC -DPIC -o .libs/molecules-container.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-bonds.cc -fPIC -DPIC -o .libs/coot-molecule-bonds.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g 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-DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi-prob.lo phi-psi-prob.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o phi-psi-prob.lo phi-psi-prob.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-moltris.lo coot-molecule-moltris.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c phi-psi-prob.cc -fPIC -DPIC -o .libs/phi-psi-prob.o -In file included from coot-molecule-maps.cc:32: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-moltris.cc -fPIC -DPIC -o .libs/coot-molecule-moltris.o In file included from ../mini-mol/mini-mol.hh:29, from ../ligand/ligand.hh:32, from ../ligand/residue_by_phi_psi.hh:37, @@ -7676,35 +7705,25 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from coot-molecule.cc:35: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-moltris.lo coot-molecule-moltris.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-replace-fragment.lo coot-molecule-replace-fragment.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-moltris.cc -fPIC -DPIC -o .libs/coot-molecule-moltris.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-backup.lo coot-molecule-backup.cc +In file included from ../mini-mol/mini-mol.hh:29, + from ../coot-utils/atom-tree.hh:33, + from coot-molecule.hh:42, + from coot-molecule-merge-molecules.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-replace-fragment.lo coot-molecule-replace-fragment.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-backup.lo coot-molecule-backup.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-replace-fragment.cc -fPIC -DPIC -o .libs/coot-molecule-replace-fragment.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-backup.cc -fPIC -DPIC -o .libs/coot-molecule-backup.o -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from coot-molecule.cc:37: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from ../coot-utils/atom-tree.hh:33, - from coot-molecule.hh:42, - from molecules-container.hh:19, - from molecules-container.cc:32: +In file included from coot-molecule.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from ../coot-utils/atom-tree.hh:33, - from coot-molecule.hh:42, - from coot-molecule-bonds.cc:39: +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-replace-fragment.cc -fPIC -DPIC -o .libs/coot-molecule-replace-fragment.o +In file included from coot-molecule-maps.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -7712,44 +7731,24 @@ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, - from molecules-container.hh:19, - from molecules-container-modelling.cc:4: + from coot-molecule-validation.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from coot-molecule.hh:47, - from coot-molecule-maps.cc:36: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from coot-molecule.hh:47: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-backup.cc -fPIC -DPIC -o .libs/coot-molecule-backup.o In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from ../coot-utils/atom-tree.hh:33, - from coot-molecule.hh:42, - from coot-molecule-validation.cc:35: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from ../coot-utils/atom-tree.hh:33, - from coot-molecule.hh:42, - from coot-molecule-merge-molecules.cc:28: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from coot-molecule.cc:37: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -7768,6 +7767,22 @@ 65 | #pragma omp simd ../MoleculesToTriangles/CXXSurface/CXXCoord.h:73: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] 73 | #pragma omp simd +In file included from ../mini-mol/mini-mol.hh:29, + from ../ligand/ligand.hh:32, + from ../ligand/wligand.hh:25, + from molecules-container-ligand-fitting.cc:4: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from ../mini-mol/mini-mol.hh:29, + from ../coot-utils/atom-tree.hh:33, + from coot-molecule.hh:42, + from coot-molecule-bonds.cc:39: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../ideal/simple-restraint.hh:174, from coot-molecule.hh:47, from coot-molecule.cc:38: @@ -7779,68 +7794,58 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-bonds-instanced.lo coot-molecule-bonds-instanced.cc +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../lidia-core/rdkit-interface.hh:29, + from coot-molecule.hh:53: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from coot-molecule-backup.cc:28: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from coot-molecule.hh:47: +In file included from coot-molecule.hh:47, + from coot-molecule-maps.cc:36: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ In file included from ../mini-mol/mini-mol.hh:29, - from ../ligand/ligand.hh:32, - from ../ligand/wligand.hh:25, - from molecules-container-ligand-fitting.cc:4: + from ../coot-utils/atom-tree.hh:33, + from coot-molecule.hh:42, + from molecules-container.hh:19, + from molecules-container.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../lidia-core/rdkit-interface.hh:29, - from coot-molecule.hh:53: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../lidia-core/rdkit-interface.hh:29, - from coot-molecule.hh:53: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from coot-molecule.hh:75: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../lidia-core/rdkit-interface.hh:29, - from coot-molecule.hh:53: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from coot-molecule.hh:75: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +In file included from ../mini-mol/mini-mol.hh:29, + from ../coot-utils/atom-tree.hh:33, + from coot-molecule.hh:42, + from molecules-container.hh:19, + from molecules-container-modelling.cc:4: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from ../mini-mol/mini-mol.hh:29, + from ../coot-utils/atom-tree.hh:33, + from coot-molecule.hh:42, + from coot-molecule-moltris.cc:28: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-bonds-instanced.cc -fPIC -DPIC -o .libs/coot-molecule-bonds-instanced.o In file included from coot-molecule.hh:47, from molecules-container.hh:19, from molecules-container-ligand-fitting.cc:6: @@ -7848,33 +7853,11 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from coot-molecule.hh:47, - from coot-molecule-backup.cc:29: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from ../coot-utils/atom-tree.hh:33, - from coot-molecule.hh:42, - from coot-molecule-moltris.cc:28: +In file included from coot-molecule-backup.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../lidia-core/rdkit-interface.hh:29, - from coot-molecule.hh:53: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from coot-molecule.hh:75: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, @@ -7890,27 +7873,11 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-bonds-instanced.lo coot-molecule-bonds-instanced.cc -In file included from ../coot-utils/coot-map-utils.hh:33, - from coot-molecule.hh:75: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from coot-molecule.hh:75: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-bonds-instanced.cc -fPIC -DPIC -o .libs/coot-molecule-bonds-instanced.o -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../lidia-core/rdkit-interface.hh:29, - from coot-molecule.hh:53: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +In file included from coot-molecule.hh:47: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -7927,6 +7894,11 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +In file included from coot-molecule.hh:47: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: @@ -7934,6 +7906,12 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from ../coot-utils/coot-map-utils.hh:33, + from coot-molecule.hh:75: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: @@ -7973,6 +7951,25 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../lidia-core/rdkit-interface.hh:29, + from coot-molecule.hh:53: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from coot-molecule.hh:47, + from coot-molecule-backup.cc:29: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from ../coot-utils/coot-map-utils.hh:33, + from coot-molecule.hh:75: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -8004,13 +8001,50 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../lidia-core/rdkit-interface.hh:29, + from coot-molecule.hh:53: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../lidia-core/rdkit-interface.hh:29, + from coot-molecule.hh:53: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from ../coot-utils/coot-map-utils.hh:33, + from coot-molecule.hh:75: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-mmrrcc.lo molecules-container-mmrrcc.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-mmrrcc.cc -fPIC -DPIC -o .libs/molecules-container-mmrrcc.o +In file included from ../coot-utils/coot-map-utils.hh:33, + from coot-molecule.hh:75: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../lidia-core/rdkit-interface.hh:29, + from coot-molecule.hh:53: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from ../coot-utils/coot-map-utils.hh:33, + from coot-molecule.hh:75: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: @@ -8028,51 +8062,46 @@ molecules-container-ligand-fitting.cc:414:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 414 | auto p = coot::util::mean_and_variance(xmap); | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-gltf.lo molecules-container-gltf.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-mmrrcc.lo molecules-container-mmrrcc.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-mmrrcc.cc -fPIC -DPIC -o .libs/molecules-container-mmrrcc.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. 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-DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-gltf.cc -fPIC -DPIC -o .libs/molecules-container-gltf.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-refine.lo coot-molecule-refine.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-refine.cc -fPIC -DPIC -o .libs/coot-molecule-refine.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-superpose.lo molecules-container-superpose.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-superpose.cc -fPIC -DPIC -o .libs/molecules-container-superpose.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, - from molecules-container-mmrrcc.cc:2: + from molecules-container-gltf.cc:4: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-gltf.cc -fPIC -DPIC -o .libs/molecules-container-gltf.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-refine.lo coot-molecule-refine.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rigid-body-fit.lo rigid-body-fit.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o moorhen-h-bonds.lo moorhen-h-bonds.cc In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-refine.cc -fPIC -DPIC -o .libs/coot-molecule-refine.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-superpose.lo molecules-container-superpose.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-superpose.cc -fPIC -DPIC -o .libs/molecules-container-superpose.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rigid-body-fit.lo rigid-body-fit.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rigid-body-fit.cc -fPIC -DPIC -o .libs/rigid-body-fit.o -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../lidia-core/rdkit-interface.hh:29, - from coot-molecule.hh:53: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o moorhen-h-bonds.lo moorhen-h-bonds.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c moorhen-h-bonds.cc -fPIC -DPIC -o .libs/moorhen-h-bonds.o In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, - from molecules-container-gltf.cc:4: + from molecules-container-mmrrcc.cc:2: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from coot-molecule.hh:75: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ +In file included from coot-molecule.hh:47: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from ../mini-mol/mini-mol.hh:29, from rigid-body-fit.hh:7, from rigid-body-fit.cc:2: @@ -8080,13 +8109,7 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c moorhen-h-bonds.cc -fPIC -DPIC -o .libs/moorhen-h-bonds.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-bucca-ml-growing.lo molecules-container-bucca-ml-growing.cc -In file included from coot-molecule.hh:47: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-bucca-ml-growing.lo molecules-container-bucca-ml-growing.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, @@ -8096,7 +8119,21 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../lidia-core/rdkit-interface.hh:29, + from coot-molecule.hh:53: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o instancing.lo instancing.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-bucca-ml-growing.cc -fPIC -DPIC -o .libs/molecules-container-bucca-ml-growing.o +In file included from ../coot-utils/coot-map-utils.hh:33, + from coot-molecule.hh:75: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, @@ -8110,15 +8147,28 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o instancing.lo instancing.cc +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../lidia-core/rdkit-interface.hh:29, + from coot-molecule.hh:53: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c instancing.cc -fPIC -DPIC -o .libs/instancing.o +In file included from ../coot-utils/coot-map-utils.hh:33, + from coot-molecule.hh:75: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-maps.lo molecules-container-maps.cc In file included from coot-molecule.hh:47: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-maps.lo molecules-container-maps.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c instancing.cc -fPIC -DPIC -o .libs/instancing.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-maps.cc -fPIC -DPIC -o .libs/molecules-container-maps.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-change-chain-id.lo coot-molecule-change-chain-id.cc In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, @@ -8128,6 +8178,9 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o blender-mesh.lo blender-mesh.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-change-chain-id.cc -fPIC -DPIC -o .libs/coot-molecule-change-chain-id.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-blender.lo coot-molecule-blender.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: @@ -8135,6 +8188,7 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c blender-mesh.cc -fPIC -DPIC -o .libs/blender-mesh.o In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -8146,8 +8200,21 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-change-chain-id.lo coot-molecule-change-chain-id.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o blender-mesh.lo blender-mesh.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-blender.cc -fPIC -DPIC -o .libs/coot-molecule-blender.o +In file included from ../mini-mol/mini-mol.hh:29, + from ../coot-utils/atom-tree.hh:33, + from coot-molecule.hh:42, + from molecules-container.hh:19, + from molecules-container-bucca-ml-growing.cc:2: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from coot-molecule.hh:47: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: @@ -8155,15 +8222,21 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-change-chain-id.cc -fPIC -DPIC -o .libs/coot-molecule-change-chain-id.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-molecule-blender.lo coot-molecule-blender.cc In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c blender-mesh.cc -fPIC -DPIC -o .libs/blender-mesh.o +In file included from ../mini-mol/mini-mol.hh:29, + from ../coot-utils/atom-tree.hh:33, + from coot-molecule.hh:42, + from molecules-container.hh:19, + from molecules-container-maps.cc:27: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: @@ -8171,22 +8244,19 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-molecule-blender.cc -fPIC -DPIC -o .libs/coot-molecule-blender.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-blender.lo molecules-container-blender.cc In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from ../coot-utils/atom-tree.hh:33, - from coot-molecule.hh:42, - from molecules-container.hh:19, - from molecules-container-bucca-ml-growing.cc:2: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +In file included from coot-molecule.hh:47: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-blender.cc -fPIC -DPIC -o .libs/molecules-container-blender.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: @@ -8200,32 +8270,32 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +swig -o wrap-coot-api.cc -python -c++ coot-headless-api.i In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, - from molecules-container.hh:19, - from molecules-container-maps.cc:27: + from coot-molecule-blender.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from coot-molecule.hh:47: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecules-container-blender.lo molecules-container-blender.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-blender.cc -fPIC -DPIC -o .libs/molecules-container-blender.o -In file included from coot-molecule.hh:47: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -swig -o wrap-coot-api.cc -python -c++ coot-headless-api.i molecules-container.hh:953: Warning 325: Nested class not currently supported (auto_read_mtz_info_t ignored) molecules-container.hh:1042: Warning 325: Nested class not currently supported (r_factor_stats ignored) molecules-container.hh:1709: Warning 325: Nested class not currently supported (fit_ligand_info_t ignored) molecules-container.hh:1824: Warning 325: Nested class not currently supported (ltj_stats_t ignored) +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../lidia-core/rdkit-interface.hh:29, + from coot-molecule.hh:53: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from ../coot-utils/coot-map-utils.hh:33, + from coot-molecule.hh:75: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, @@ -8239,15 +8309,15 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o _coot_headless_api_la-molecules-container-swig.lo `test -f 'molecules-container-swig.cc' || echo './'`molecules-container-swig.cc -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../lidia-core/rdkit-interface.hh:29, - from coot-molecule.hh:53: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +In file included from coot-molecule.hh:47: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o _coot_headless_api_la-molecules-container-swig.lo `test -f 'molecules-container-swig.cc' || echo './'`molecules-container-swig.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o _coot_headless_api_la-wrap-coot-api.lo `test -f 'wrap-coot-api.cc' || echo './'`wrap-coot-api.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecules-container-swig.cc -fPIC -DPIC -o .libs/_coot_headless_api_la-molecules-container-swig.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c wrap-coot-api.cc -fPIC -DPIC -o .libs/_coot_headless_api_la-wrap-coot-api.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: @@ -8261,20 +8331,6 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from coot-molecule.hh:75: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from ../coot-utils/atom-tree.hh:33, - from coot-molecule.hh:42, - from coot-molecule-blender.cc:26: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, @@ -8291,11 +8347,6 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from coot-molecule.hh:47: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -8307,37 +8358,22 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../lidia-core/rdkit-interface.hh:29, - from coot-molecule.hh:53: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o _coot_headless_api_la-wrap-coot-api.lo `test -f 'wrap-coot-api.cc' || echo './'`wrap-coot-api.cc -In file included from ../coot-utils/coot-map-utils.hh:33, - from coot-molecule.hh:75: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SSMLIB -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -I/usr/include/python3.13 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c wrap-coot-api.cc -fPIC -DPIC -o .libs/_coot_headless_api_la-wrap-coot-api.o -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../lidia-core/rdkit-interface.hh:29, - from coot-molecule.hh:53: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, - from molecules-container-swig.cc:6: + from wrap-coot-api.cc:3435: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../lidia-core/rdkit-interface.hh:29, + from coot-molecule.hh:53: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from ../coot-utils/coot-map-utils.hh:33, from coot-molecule.hh:75: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -8353,7 +8389,7 @@ from ../coot-utils/atom-tree.hh:33, from coot-molecule.hh:42, from molecules-container.hh:19, - from wrap-coot-api.cc:3435: + from molecules-container-swig.cc:6: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -8376,7 +8412,6 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../ligand/libcoot-ligand.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../analysis/libcoot-analysis.la ../density-contour/libcoot-isosurface.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -Wl,-z,relro -o libcoot-api.la -rpath /usr/lib/aarch64-linux-gnu coot-molecule.lo coot-colour.lo add-terminal-residue.lo rama-plot-phi-psi.lo colour-functions.lo coot-molecule-maps.lo coot-molecule-merge-molecules.lo coot-molecule-bonds.lo coot-molecule-validation.lo molecules-container-modelling.lo molecules-container.lo make-a-dodec.lo molecules-container-ligand-fitting.lo phi-psi-prob.lo coot-molecule-moltris.lo coot-molecule-replace-fragment.lo coot-molecule-backup.lo coot-molecule-bonds-instanced.lo molecules-container-mmrrcc.lo molecules-container-gltf.lo coot-molecule-refine.lo molecules-container-superpose.lo rigid-body-fit.lo moorhen-h-bonds.lo molecules-container-bucca-ml-growing.lo instancing.lo molecules-container-maps.lo coot-molecule-change-chain-id.lo blender-mesh.lo coot-molecule-blender.lo molecules-container-blender.lo In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-molecule.hh:53: @@ -8390,11 +8425,12 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../ligand/libcoot-ligand.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../analysis/libcoot-analysis.la ../density-contour/libcoot-isosurface.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -Wl,-z,relro -o libcoot-api.la -rpath /usr/lib/aarch64-linux-gnu coot-molecule.lo coot-colour.lo add-terminal-residue.lo rama-plot-phi-psi.lo colour-functions.lo coot-molecule-maps.lo coot-molecule-merge-molecules.lo coot-molecule-bonds.lo coot-molecule-validation.lo molecules-container-modelling.lo molecules-container.lo make-a-dodec.lo molecules-container-ligand-fitting.lo phi-psi-prob.lo coot-molecule-moltris.lo coot-molecule-replace-fragment.lo coot-molecule-backup.lo coot-molecule-bonds-instanced.lo molecules-container-mmrrcc.lo molecules-container-gltf.lo coot-molecule-refine.lo molecules-container-superpose.lo rigid-body-fit.lo moorhen-h-bonds.lo molecules-container-bucca-ml-growing.lo instancing.lo molecules-container-maps.lo coot-molecule-change-chain-id.lo blender-mesh.lo coot-molecule-blender.lo molecules-container-blender.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-molecule.o .libs/coot-colour.o .libs/add-terminal-residue.o .libs/rama-plot-phi-psi.o .libs/colour-functions.o .libs/coot-molecule-maps.o .libs/coot-molecule-merge-molecules.o .libs/coot-molecule-bonds.o .libs/coot-molecule-validation.o .libs/molecules-container-modelling.o .libs/molecules-container.o .libs/make-a-dodec.o .libs/molecules-container-ligand-fitting.o .libs/phi-psi-prob.o .libs/coot-molecule-moltris.o .libs/coot-molecule-replace-fragment.o .libs/coot-molecule-backup.o .libs/coot-molecule-bonds-instanced.o .libs/molecules-container-mmrrcc.o .libs/molecules-container-gltf.o .libs/coot-molecule-refine.o .libs/molecules-container-superpose.o .libs/rigid-body-fit.o .libs/moorhen-h-bonds.o .libs/molecules-container-bucca-ml-growing.o .libs/instancing.o .libs/molecules-container-maps.o .libs/coot-molecule-change-chain-id.o .libs/blender-mesh.o .libs/coot-molecule-blender.o .libs/molecules-container-blender.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/density-contour/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../MoleculesToTriangles/CXXClasses/.libs/libMoleculesToTrianglesCXXClasses.so ../MoleculesToTriangles/CXXSurface/.libs/libMoleculesToTrianglesCXXSurface.so ../ligand/.libs/libcoot-ligand.so ../pli/.libs/libcoot-pli.so ../ideal/.libs/libcoot-ideal.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../analysis/.libs/libcoot-analysis.so ../density-contour/.libs/libcoot-isosurface.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coords/.libs/libcoot-coords.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-api.so.0 -o .libs/libcoot-api.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-api.so.0" && ln -s "libcoot-api.so.0.0.0" "libcoot-api.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-api.so" && ln -s "libcoot-api.so.0.0.0" "libcoot-api.so") libtool: link: ( cd ".libs" && rm -f "libcoot-api.la" && ln -s "../libcoot-api.la" "libcoot-api.la" ) -/bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined -Wl,-z,relro -o _coot_headless_api.la -rpath /usr/lib/python3/dist-packages _coot_headless_api_la-wrap-coot-api.lo _coot_headless_api_la-molecules-container-swig.lo libcoot-api.la +/bin/sh ../libtool --tag=CXX --mode=link g++ -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined -Wl,-z,relro -o _coot_headless_api.la -rpath /usr/lib/python3/dist-packages _coot_headless_api_la-wrap-coot-api.lo _coot_headless_api_la-molecules-container-swig.lo libcoot-api.la libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/_coot_headless_api_la-wrap-coot-api.o .libs/_coot_headless_api_la-molecules-container-swig.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/api/.libs ./.libs/libcoot-api.so -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot_headless_api.so.0 -o .libs/_coot_headless_api.so.0.0.0 libtool: link: (cd ".libs" && rm -f "_coot_headless_api.so.0" && ln -s "_coot_headless_api.so.0.0.0" "_coot_headless_api.so.0") libtool: link: (cd ".libs" && rm -f "_coot_headless_api.so" && ln -s "_coot_headless_api.so.0.0.0" "_coot_headless_api.so") @@ -8403,55 +8439,42 @@ Making all in layla make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o main.o main.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" 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-DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c layla_embedded.cpp -fPIC -DPIC -o .libs/layla_embedded.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c utils.cpp -fPIC -DPIC -o .libs/utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c signals.cpp -fPIC -DPIC -o .libs/signals.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c notifier.cpp -fPIC -DPIC -o .libs/notifier.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c layla_embedded.cpp -fPIC -DPIC -o .libs/layla_embedded.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ui.cpp -fPIC -DPIC -o .libs/ui.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c notifier.cpp -fPIC -DPIC -o .libs/notifier.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas.cpp -fPIC -DPIC -o .libs/ligand_editor_canvas.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c python_utils.cpp -fPIC -DPIC -o .libs/python_utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/model.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/model.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c utils.cpp -fPIC -DPIC -o .libs/utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/core.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/core.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/tools.lo ligand_editor_canvas/tools.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c python_utils.cpp -fPIC -DPIC -o .libs/python_utils.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/tools.lo ligand_editor_canvas/tools.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/tools.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/tools.o In file included from python_utils.cpp:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/render.lo ligand_editor_canvas/render.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o ligand_editor_canvas/render.lo ligand_editor_canvas/render.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON=1 -I/usr/include/python3.13 -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DUSE_LIBCURL=1 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c ligand_editor_canvas/render.cpp -fPIC -DPIC -o ligand_editor_canvas/.libs/render.o In file included from main.cpp:25: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from ui.cpp:28: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -ligand_editor_canvas/core.cpp: In member function 'void coot::ligand_editor_canvas::impl::WidgetCoreData::undo_edition()': -ligand_editor_canvas/core.cpp:74:34: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 74 | if(this->state_stack->size() > this->state_stack_pos + 1) { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -ligand_editor_canvas/render.cpp: In member function 'std::pair<_graphene_point_t, _graphene_point_t> coot::ligand_editor_canvas::impl::MoleculeRenderContext::cropped_bond_coords(const graphene_point_t&, unsigned int, const graphene_point_t&, unsigned int)': -ligand_editor_canvas/render.cpp:756:219: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 - 756 | std::pair MoleculeRenderContext::cropped_bond_coords(const graphene_point_t& first_atom, unsigned int first_atom_idx, const graphene_point_t& second_atom, unsigned int second_atom_idx) { - | ^ ligand_editor_canvas/model.cpp: In member function 'std::pair coot::ligand_editor_canvas::CanvasMolecule::get_on_screen_coords(float, float) const': ligand_editor_canvas/model.cpp:144:85: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 144 | std::pair CanvasMolecule::get_on_screen_coords(float x, float y) const noexcept { @@ -8460,6 +8483,10 @@ ligand_editor_canvas/model.cpp:564:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 564 | while(i!=ring.size()) { | ~^~~~~~~~~~~~~ +ligand_editor_canvas/core.cpp: In member function 'void coot::ligand_editor_canvas::impl::WidgetCoreData::undo_edition()': +ligand_editor_canvas/core.cpp:74:34: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 74 | if(this->state_stack->size() > this->state_stack_pos + 1) { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ligand_editor_canvas/model.cpp:586:62: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses] 586 | bool x_requirement = bond_ptr->second_atom_x > bond_ptr->first_atom_x == sign_of_y_offset_from_center; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ @@ -8558,35 +8585,79 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_wedge(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': -ligand_editor_canvas/render.cpp:869:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 869 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); - | ^ -ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_dashed_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': -ligand_editor_canvas/render.cpp:910:95: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 - 910 | auto [current,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); - | ^ -ligand_editor_canvas/render.cpp:912:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 912 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); - | ^ -ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_wavy_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': -ligand_editor_canvas/render.cpp:943:110: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 - 943 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); - | ^ -ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_side_bond_line(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool, std::optional, std::optional)': -ligand_editor_canvas/render.cpp:1067:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1067 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); - | ^ -ligand_editor_canvas/render.cpp:1115:5: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1115 | ); - | ^ -ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_centered_double_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': -ligand_editor_canvas/render.cpp:1171:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1171 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); - | ^ -ligand_editor_canvas/render.cpp:1185:110: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1185 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); - | ^ +ligand_editor_canvas/model.cpp: In instantiation of 'coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings():: [with auto:30 = std::shared_ptr]': +/usr/include/c++/14/bits/predefined_ops.h:318:23: required from 'bool __gnu_cxx::__ops::_Iter_pred<_Predicate>::operator()(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()::]' + 318 | { return bool(_M_pred(*__it)); } + | ~~~~~~~^~~~~~~ +/usr/include/c++/14/bits/stl_algobase.h:2101:14: required from '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' + 2101 | if (__pred(__first)) + | ~~~~~~^~~~~~~~~ +/usr/include/c++/14/bits/stl_algobase.h:2146:23: required from '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' + 2146 | return __find_if(__first, __last, __pred, + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ + 2147 | std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h:3876:28: required from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()::]' + 3876 | return std::__find_if(__first, __last, + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 3877 | __gnu_cxx::__ops::__pred_iter(__pred)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +ligand_editor_canvas/model.cpp:572:37: required from here + 572 | auto bond = std::find_if(bonds_of_atom_one->second.begin(),bonds_of_atom_one->second.end(),[=](const auto bond){ + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 575 | }); + | ~~ +ligand_editor_canvas/model.cpp:573:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] + 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +ligand_editor_canvas/model.cpp:573:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] + 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +ligand_editor_canvas/model.cpp:574:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] + 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +ligand_editor_canvas/model.cpp:574:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] + 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +ligand_editor_canvas/model.cpp: In instantiation of 'coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int):: [with auto:35 = std::shared_ptr]': +/usr/include/c++/14/bits/predefined_ops.h:318:23: required from 'bool __gnu_cxx::__ops::_Iter_pred<_Predicate>::operator()(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int)::]' + 318 | { return bool(_M_pred(*__it)); } + | ~~~~~~~^~~~~~~ +/usr/include/c++/14/bits/stl_algobase.h:2101:14: required from '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' + 2101 | if (__pred(__first)) + | ~~~~~~^~~~~~~~~ +/usr/include/c++/14/bits/stl_algobase.h:2146:23: required from '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' + 2146 | return __find_if(__first, __last, __pred, + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ + 2147 | std::__iterator_category(__first)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h:3876:28: required from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int)::]' + 3876 | return std::__find_if(__first, __last, + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 3877 | __gnu_cxx::__ops::__pred_iter(__pred)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +ligand_editor_canvas/model.cpp:928:31: required from here + 928 | auto target = std::find_if(bonds_for_atom_a->second.begin(),bonds_for_atom_a->second.end(),[=](const auto& bond){ + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 930 | }); + | ~~ +ligand_editor_canvas/model.cpp:929:38: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] + 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +ligand_editor_canvas/model.cpp:929:72: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] + 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +In file included from ui.cpp:28: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from state.cpp:38: @@ -8921,74 +8992,39 @@ ligand_editor_canvas.cpp:260:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 260 | auto coords = target.get_on_screen_coords(atom.x, atom.y); | ^ -ligand_editor_canvas/model.cpp: In instantiation of 'coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings():: [with auto:30 = std::shared_ptr]': -/usr/include/c++/14/bits/predefined_ops.h:318:23: required from 'bool __gnu_cxx::__ops::_Iter_pred<_Predicate>::operator()(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()::]' - 318 | { return bool(_M_pred(*__it)); } - | ~~~~~~~^~~~~~~ -/usr/include/c++/14/bits/stl_algobase.h:2101:14: required from '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' - 2101 | if (__pred(__first)) - | ~~~~~~^~~~~~~~~ -/usr/include/c++/14/bits/stl_algobase.h:2146:23: required from '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' - 2146 | return __find_if(__first, __last, __pred, - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ - 2147 | std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_algo.h:3876:28: required from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::process_alignment_in_rings()::]' - 3876 | return std::__find_if(__first, __last, - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 3877 | __gnu_cxx::__ops::__pred_iter(__pred)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -ligand_editor_canvas/model.cpp:572:37: required from here - 572 | auto bond = std::find_if(bonds_of_atom_one->second.begin(),bonds_of_atom_one->second.end(),[=](const auto bond){ - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 575 | }); - | ~~ -ligand_editor_canvas/model.cpp:573:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] - 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -ligand_editor_canvas/model.cpp:573:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] - 573 | return (bond->first_atom_idx == atom_one_idx && bond->second_atom_idx == atom_two_idx) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -ligand_editor_canvas/model.cpp:574:46: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] - 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -ligand_editor_canvas/model.cpp:574:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] - 574 | || (bond->first_atom_idx == atom_two_idx && bond->second_atom_idx == atom_one_idx); - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -ligand_editor_canvas/model.cpp: In instantiation of 'coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int):: [with auto:35 = std::shared_ptr]': -/usr/include/c++/14/bits/predefined_ops.h:318:23: required from 'bool __gnu_cxx::__ops::_Iter_pred<_Predicate>::operator()(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int)::]' - 318 | { return bool(_M_pred(*__it)); } - | ~~~~~~~^~~~~~~ -/usr/include/c++/14/bits/stl_algobase.h:2101:14: required from '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' - 2101 | if (__pred(__first)) - | ~~~~~~^~~~~~~~~ -/usr/include/c++/14/bits/stl_algobase.h:2146:23: required from '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]' - 2146 | return __find_if(__first, __last, __pred, - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ - 2147 | std::__iterator_category(__first)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_algo.h:3876:28: required from '_IIter std::find_if(_IIter, _IIter, _Predicate) [with _IIter = __gnu_cxx::__normal_iterator*, vector > >; _Predicate = coot::ligand_editor_canvas::CanvasMolecule::highlight_bond(int, int)::]' - 3876 | return std::__find_if(__first, __last, - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 3877 | __gnu_cxx::__ops::__pred_iter(__pred)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -ligand_editor_canvas/model.cpp:928:31: required from here - 928 | auto target = std::find_if(bonds_for_atom_a->second.begin(),bonds_for_atom_a->second.end(),[=](const auto& bond){ - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 930 | }); - | ~~ -ligand_editor_canvas/model.cpp:929:38: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] - 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ -ligand_editor_canvas/model.cpp:929:72: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] - 929 | return bond->second_atom_idx == atom_b && bond->first_atom_idx == atom_a; - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +ligand_editor_canvas/render.cpp: In member function 'std::pair<_graphene_point_t, _graphene_point_t> coot::ligand_editor_canvas::impl::MoleculeRenderContext::cropped_bond_coords(const graphene_point_t&, unsigned int, const graphene_point_t&, unsigned int)': +ligand_editor_canvas/render.cpp:756:219: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 + 756 | std::pair MoleculeRenderContext::cropped_bond_coords(const graphene_point_t& first_atom, unsigned int first_atom_idx, const graphene_point_t& second_atom, unsigned int second_atom_idx) { + | ^ +ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_wedge(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': +ligand_editor_canvas/render.cpp:869:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 869 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); + | ^ +ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_dashed_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': +ligand_editor_canvas/render.cpp:910:95: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 + 910 | auto [current,target_cropped] = cropped_bond_coords(origin, origin_idx, target, target_idx); + | ^ +ligand_editor_canvas/render.cpp:912:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 912 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); + | ^ +ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_wavy_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': +ligand_editor_canvas/render.cpp:943:110: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 + 943 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); + | ^ +ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_side_bond_line(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool, std::optional, std::optional)': +ligand_editor_canvas/render.cpp:1067:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1067 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); + | ^ +ligand_editor_canvas/render.cpp:1115:5: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1115 | ); + | ^ +ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_centered_double_bond(const coot::ligand_editor_canvas::CanvasMolecule::Bond&)': +ligand_editor_canvas/render.cpp:1171:54: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1171 | auto [pv_x,pv_y] = bond.get_perpendicular_versor(); + | ^ +ligand_editor_canvas/render.cpp:1185:110: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1185 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); + | ^ ligand_editor_canvas/render.cpp: In member function 'void coot::ligand_editor_canvas::impl::MoleculeRenderContext::draw_straight_wedge(const coot::ligand_editor_canvas::CanvasMolecule::Bond&, bool)': ligand_editor_canvas/render.cpp:846:6: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 846 | void MoleculeRenderContext::draw_straight_wedge(const CanvasMolecule::Bond& bond, bool reversed) { @@ -9054,26 +9090,26 @@ ligand_editor_canvas/render.cpp:1185:46: note: parameter passing for argument of type 'std::pair<_graphene_point_t, _graphene_point_t>' when C++17 is enabled changed to match C++14 in GCC 10.1 1185 | auto [first,second] = cropped_bond_coords(first_atom,bond.first_atom_idx,second_atom,bond.second_atom_idx); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-layla.la -rpath /usr/lib/aarch64-linux-gnu layla_embedded.lo generators.lo notifier.lo signals.lo state.lo ui.lo utils.lo ligand_editor_canvas/core.lo ligand_editor_canvas.lo ligand_editor_canvas/model.lo ligand_editor_canvas/tools.lo ligand_editor_canvas/render.lo python_utils.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread +/bin/sh 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-lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/layla_embedded.o .libs/generators.o .libs/notifier.o .libs/signals.o .libs/state.o .libs/ui.o .libs/utils.o ligand_editor_canvas/.libs/core.o .libs/ligand_editor_canvas.o ligand_editor_canvas/.libs/model.o ligand_editor_canvas/.libs/tools.o 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-fPIC -DPIC -o .libs/validation-graphs.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-graph-widget.cc -fPIC -DPIC -o .libs/validation-graph-widget.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-information.cc -fPIC -DPIC -o .libs/validation-information.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c residue-validation-information.cc -fPIC -DPIC -o .libs/residue-validation-information.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-view-widget.cc -fPIC -DPIC -o .libs/sequence-view-widget.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation-graphs.cc -fPIC -DPIC -o .libs/validation-graphs.o validation-graph-widget.cc: In function 'void coot_validation_graph_snapshot(GtkWidget*, GtkSnapshot*)': validation-graph-widget.cc:229:66: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 229 | GtkStyleContext* style_context = gtk_widget_get_style_context(widget); @@ -9094,7 +9130,7 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:112:6: note: declared here 112 | void gtk_style_context_get_color (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-validation-graphs.la -rpath /usr/lib/aarch64-linux-gnu residue-validation-information.lo validation-graph-widget.lo validation-graphs.lo validation-information.lo sequence-view-widget.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-validation-graphs.la -rpath /usr/lib/aarch64-linux-gnu residue-validation-information.lo validation-graph-widget.lo validation-graphs.lo validation-information.lo sequence-view-widget.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/residue-validation-information.o .libs/validation-graph-widget.o .libs/validation-graphs.o .libs/validation-information.o .libs/sequence-view-widget.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/cootaneer/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/analysis/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../ideal/.libs/libcoot-ideal.so ../coot-utils/.libs/libcoot-map-heavy.so ../lidia-core/.libs/libcoot-lidia-core.so ../cootaneer/.libs/libcootaneer.so ../db-main/.libs/libcoot-db-main.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../analysis/.libs/libcoot-analysis.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-validation-graphs.so.0 -o .libs/libcoot-validation-graphs.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-validation-graphs.so.0" && ln -s "libcoot-validation-graphs.so.0.0.0" "libcoot-validation-graphs.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-validation-graphs.so" && ln -s "libcoot-validation-graphs.so.0.0.0" "libcoot-validation-graphs.so") @@ -9102,52 +9138,44 @@ make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' Making all in src make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 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c-interface-build-morph.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-main-chain.lo c-interface-build-main-chain.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' 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-I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build.cc -fPIC -DPIC -o .libs/c-interface-build.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c scm-boot-guile.cc -fPIC -DPIC -o .libs/scm-boot-guile.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-bonds.cc -fPIC -DPIC -o .libs/c-interface-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c boot-python.cc -fPIC -DPIC -o .libs/boot-python.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c atom-overlaps.cc -fPIC -DPIC -o .libs/atom-overlaps.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c scm-boot-guile.cc -fPIC -DPIC -o .libs/scm-boot-guile.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c git-revision-count.cc -fPIC -DPIC -o .libs/git-revision-count.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-analysis.cc -fPIC -DPIC -o .libs/c-interface-analysis.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c init_coot_as_python_module.cc -fPIC -DPIC -o .libs/init_coot_as_python_module.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-side-chain.cc -fPIC -DPIC -o .libs/c-interface-build-side-chain.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-analysis.cc -fPIC -DPIC -o .libs/c-interface-analysis.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c git-revision-count.cc -fPIC -DPIC -o .libs/git-revision-count.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-main-chain.cc -fPIC -DPIC -o .libs/c-interface-build-main-chain.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-bonds.cc -fPIC -DPIC -o .libs/c-interface-bonds.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-symmetry.lo c-interface-build-symmetry.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-symmetry.lo c-interface-build-symmetry.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-morph.cc -fPIC -DPIC -o .libs/c-interface-build-morph.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build.cc -fPIC -DPIC -o .libs/c-interface-build.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-gui.lo c-interface-build-gui.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-symmetry.cc -fPIC -DPIC -o .libs/c-interface-build-symmetry.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-build-gui.lo c-interface-build-gui.cc In file included from boids.cc:108: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-symmetry.cc -fPIC -DPIC -o .libs/c-interface-build-symmetry.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-curlew.lo c-interface-curlew.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-build-gui.cc -fPIC -DPIC -o .libs/c-interface-build-gui.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-curlew.lo c-interface-curlew.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-curlew.cc -fPIC -DPIC -o .libs/c-interface-curlew.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-database.lo c-interface-database.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-database.lo c-interface-database.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-database.cc -fPIC -DPIC -o .libs/c-interface-database.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-gui.lo c-interface-gui.cc -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from c-interface-build-main-chain.cc:53: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-gui.cc -fPIC -DPIC -o .libs/c-interface-gui.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-gui.lo c-interface-gui.cc In file included from ../coot-utils/coot-map-utils.hh:33, from c-interface-analysis.cc:34: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -9156,14 +9184,7 @@ | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, - from c-interface-bonds.cc:42: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from c-interface-build-side-chain.cc:56: + from c-interface-build-main-chain.cc:53: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -9175,23 +9196,17 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-gui.cc -fPIC -DPIC -o .libs/c-interface-gui.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, - from c-interface-build-morph.cc:55: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from c-interface-build-symmetry.cc:55: + from c-interface-build-side-chain.cc:56: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, - from c-interface-build-gui.cc:53: + from c-interface-bonds.cc:42: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -9220,27 +9235,22 @@ 49 | CXXCoord(const T x,const T y, const T z) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from c-interface-build-symmetry.cc:55: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from cc-interface.hh:37, - from c-interface-curlew.cc:66: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from c-interface-build-main-chain.cc:63: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72: + from graphics-info.h:72, + from c-interface-analysis.cc:36: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -9260,7 +9270,7 @@ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, - from c-interface-bonds.cc:49: + from c-interface-build.cc:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -9286,14 +9296,36 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from c-interface-build-gui.cc:53: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from cc-interface.hh:37, + from c-interface-curlew.cc:66: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from c-interface-build-morph.cc:55: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, - from init_coot_as_python_module.cc:37: + from c-interface-build-main-chain.cc:63: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from c-interface-bonds.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -9301,19 +9333,11 @@ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72, - from c-interface-analysis.cc:36: + from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from c-interface-gui.cc:72: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ @@ -9348,10 +9372,26 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72: + from graphics-info.h:72, + from c-interface-curlew.cc:70: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -9369,16 +9409,22 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, - from c-interface-build.cc:66: + from c-interface-build-side-chain.cc:66: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from command-arg.hh:33, from graphics-info.h:66, - from c-interface-build-side-chain.cc:66: + from init_coot_as_python_module.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -9404,30 +9450,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, - from c-interface-build-morph.cc:65: + from c-interface-build-gui.cc:59: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -9456,8 +9481,7 @@ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72, - from c-interface-curlew.cc:70: + from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -9480,15 +9504,41 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../coot-utils/coot-map-utils.hh:33, + from ../ligand/helix-placement.hh:24, + from c-interface-build.cc:74: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from atom-overlaps.cc:39: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, - from c-interface-build-gui.cc:59: + from c-interface-build-morph.cc:65: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -9514,6 +9564,18 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from cc-interface.hh:39, + from atom-overlaps.cc:42: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-build-symmetry.cc:64: @@ -9542,6 +9604,16 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -9550,51 +9622,134 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from atom-overlaps.cc:39: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from cc-interface.hh:39, - from atom-overlaps.cc:42: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from cc-interface.hh:39, + from c-interface-bonds.cc:55: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from c-interface-gui.cc:72: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from c-interface-curlew.cc:63: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from init_coot_as_python_module.cc:34: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../coot-utils/coot-map-utils.hh:33, + from ../ligand/helix-placement.hh:24, + from c-interface-build-main-chain.cc:69: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -9615,17 +9770,11 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../coot-utils/coot-map-utils.hh:33, from ../ligand/helix-placement.hh:24, - from c-interface-build-main-chain.cc:69: + from c-interface-build-side-chain.cc:72: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -9639,34 +9788,13 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from cc-interface.hh:39, - from c-interface-bonds.cc:55: +In file included from ../coot-utils/coot-map-utils.hh:33, + from ../ligand/helix-placement.hh:24, + from c-interface-build-gui.cc:65: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -9680,12 +9808,68 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +c-interface-build-gui.cc: In function 'void fill_move_molecule_here_dialog(GtkWidget*)': +c-interface-build-gui.cc:248:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] + 248 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: +/usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here + 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); + | ^~~~~~~~~~~~~~~~~~~~~ +c-interface-build-gui.cc: In function 'bool renumber_residues_from_widget(GtkWidget*)': +c-interface-build-gui.cc:420:64: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] + 420 | std::string chain_id = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(chain_id_combobox)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: +/usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here + 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../coot-utils/coot-map-utils.hh:33, + from ../ligand/helix-placement.hh:24, + from c-interface-build-morph.cc:71: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +c-interface-build-gui.cc: In function 'void mutate_sequence_chain_combobox_changed(GtkWidget*, gpointer)': +c-interface-build-gui.cc:914:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] + 914 | char *atc = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here + 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +c-interface-build-gui.cc: In function 'GtkWidget* wrapped_create_fast_ss_search_dialog()': +c-interface-build-gui.cc:1617:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] + 1617 | gtk_combo_box_set_active(GTK_COMBO_BOX(helix_temp_combobox), 0); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: +/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here + 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, + | ^~~~~~~~~~~~~~~~~~~~~~~~ +c-interface-build-gui.cc:1618:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] + 1618 | gtk_combo_box_set_active(GTK_COMBO_BOX(helix_noaa_combobox), 1); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here + 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, + | ^~~~~~~~~~~~~~~~~~~~~~~~ +c-interface-build-gui.cc:1619:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] + 1619 | gtk_combo_box_set_active(GTK_COMBO_BOX(strand_temp_combobox), 1); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here + 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, + | ^~~~~~~~~~~~~~~~~~~~~~~~ +c-interface-build-gui.cc:1620:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] + 1620 | gtk_combo_box_set_active(GTK_COMBO_BOX(strand_noaa_combobox), 0); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here + 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, + | ^~~~~~~~~~~~~~~~~~~~~~~~ +c-interface-build-gui.cc:1621:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] + 1621 | gtk_combo_box_set_active(GTK_COMBO_BOX(radius_combobox),1); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here + 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, + | ^~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -9694,18 +9878,31 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from gtk-utils.hh:26, - from curl-utils.hh:36, - from c-interface-gui.cc:70: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from cc-interface.hh:39, - from c-interface-gui.cc:78: +In file included from ../coot-utils/coot-map-utils.hh:33, + from ../ligand/helix-placement.hh:24, + from c-interface-build-symmetry.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-gtk2.lo c-interface-gtk2.cc +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-gtk2.cc -fPIC -DPIC -o .libs/c-interface-gtk2.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -9714,10 +9911,18 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from c-interface-curlew.cc:63: + from gtk-utils.hh:26, + from curl-utils.hh:36, + from c-interface-gui.cc:70: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:39, + from c-interface-gui.cc:78: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ c-interface-gui.cc: In function 'void open_cif_dictionary_file_selector_dialog()': c-interface-gui.cc:156:65: warning: 'GtkWidget* gtk_dialog_get_content_area(GtkDialog*)' is deprecated [-Wdeprecated-declarations] 156 | GtkWidget *aa_hbutton_box = gtk_dialog_get_content_area(GTK_DIALOG(filechooser)); @@ -9855,14 +10060,6 @@ c-interface-gui.cc:3359:40: warning: 'void gtk_color_chooser_get_rgba(GtkColorChooser*, GdkRGBA*)' is deprecated [-Wdeprecated-declarations] 3359 | gtk_color_chooser_get_rgba(GTK_COLOR_CHOOSER(self), &rgba); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtk.h:83: /usr/include/gtk-4.0/gtk/deprecated/gtkcolorchooser.h:66:10: note: declared here 66 | void gtk_color_chooser_get_rgba (GtkColorChooser *chooser, @@ -9875,24 +10072,6 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkcolorbutton.h:53:14: note: declared here 53 | GtkWidget * gtk_color_button_new_with_rgba (const GdkRGBA *rgba); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gui.cc: In function 'void save_coordinates_using_widget(GtkWidget*)': c-interface-gui.cc:3746:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 3746 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); @@ -9927,161 +10106,18 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from init_coot_as_python_module.cc:34: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../coot-utils/coot-map-utils.hh:33, - from ../ligand/helix-placement.hh:24, - from c-interface-build.cc:74: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from ../ligand/helix-placement.hh:24, - from c-interface-build-side-chain.cc:72: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from ../ligand/helix-placement.hh:24, - from c-interface-build-morph.cc:71: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../coot-utils/coot-map-utils.hh:33, - from ../ligand/helix-placement.hh:24, - from c-interface-build-gui.cc:65: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../coot-utils/coot-map-utils.hh:33, - from ../ligand/helix-placement.hh:24, - from c-interface-build-symmetry.cc:70: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -c-interface-build-gui.cc: In function 'void fill_move_molecule_here_dialog(GtkWidget*)': -c-interface-build-gui.cc:248:25: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] - 248 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtk.h:68: -/usr/include/gtk-4.0/gtk/deprecated/gtkcelllayout.h:123:7: note: declared here - 123 | void gtk_cell_layout_clear (GtkCellLayout *cell_layout); - | ^~~~~~~~~~~~~~~~~~~~~ -c-interface-build-gui.cc: In function 'bool renumber_residues_from_widget(GtkWidget*)': -c-interface-build-gui.cc:420:64: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] - 420 | std::string chain_id = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(chain_id_combobox)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: -/usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here - 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -c-interface-build-gui.cc: In function 'void mutate_sequence_chain_combobox_changed(GtkWidget*, gpointer)': -c-interface-build-gui.cc:914:50: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] - 914 | char *atc = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combobox)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here - 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -c-interface-build-gui.cc: In function 'GtkWidget* wrapped_create_fast_ss_search_dialog()': -c-interface-build-gui.cc:1617:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] - 1617 | gtk_combo_box_set_active(GTK_COMBO_BOX(helix_temp_combobox), 0); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: -/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here - 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, - | ^~~~~~~~~~~~~~~~~~~~~~~~ -c-interface-build-gui.cc:1618:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] - 1618 | gtk_combo_box_set_active(GTK_COMBO_BOX(helix_noaa_combobox), 1); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here - 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, - | ^~~~~~~~~~~~~~~~~~~~~~~~ -c-interface-build-gui.cc:1619:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] - 1619 | gtk_combo_box_set_active(GTK_COMBO_BOX(strand_temp_combobox), 1); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here - 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, - | ^~~~~~~~~~~~~~~~~~~~~~~~ -c-interface-build-gui.cc:1620:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] - 1620 | gtk_combo_box_set_active(GTK_COMBO_BOX(strand_noaa_combobox), 0); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here - 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, - | ^~~~~~~~~~~~~~~~~~~~~~~~ -c-interface-build-gui.cc:1621:27: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] - 1621 | gtk_combo_box_set_active(GTK_COMBO_BOX(radius_combobox),1); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here - 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, - | ^~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON 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-I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ligands-gui.lo c-interface-ligands-gui.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ligands-gui.cc -fPIC -DPIC -o .libs/c-interface-ligands-gui.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, @@ -10118,14 +10154,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ligands.lo c-interface-ligands.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ligands.lo c-interface-ligands.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-maps.lo c-interface-maps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ligands.cc -fPIC -DPIC -o .libs/c-interface-ligands.o -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-maps.lo c-interface-maps.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -10149,14 +10180,15 @@ | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-maps.cc -fPIC -DPIC -o .libs/c-interface-maps.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mmdb.lo c-interface-mmdb.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mmdb.lo c-interface-mmdb.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mogul.lo c-interface-mogul.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mmdb.cc -fPIC -DPIC -o .libs/c-interface-mmdb.o -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mogul.cc -fPIC -DPIC -o .libs/c-interface-mogul.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-kk.cc:34: @@ -10169,19 +10201,12 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from c-interface.h:82, - from c-interface-gtk2.cc:56: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -10203,6 +10228,20 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mogul-scripting.lo c-interface-mogul-scripting.cc +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from c-interface.h:82, + from c-interface-gtk2.cc:56: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-gtk2.cc: In function 'gboolean fileselection_sort_button_foreach_func(GtkTreeModel*, GtkTreePath*, GtkTreeIter*, gpointer)': c-interface-gtk2.cc:101:23: warning: 'void gtk_tree_model_get(GtkTreeModel*, GtkTreeIter*, ...)' is deprecated: Use 'GListModel' instead [-Wdeprecated-declarations] 101 | gtk_tree_model_get (model, iter, @@ -10257,6 +10296,7 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mogul-scripting.cc -fPIC -DPIC -o .libs/c-interface-mogul-scripting.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from c-interface-ligands.cc:46: @@ -10277,28 +10317,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mogul.lo c-interface-mogul.cc -In file included from ../coot-utils/coot-map-utils.hh:33, - from c-interface-maps.cc:38: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mogul.cc -fPIC -DPIC -o .libs/c-interface-mogul.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mogul-scripting.lo c-interface-mogul-scripting.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mogul-scripting.cc -fPIC -DPIC -o .libs/c-interface-mogul-scripting.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mutate.lo c-interface-mutate.cc -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from c-interface-image.cc:38: @@ -10306,40 +10324,28 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from c-interface-ligands-gui.cc:54: +In file included from c-interface-image.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from c-interface-image.cc:44: +In file included from c-interface-mogul-scripting.cc:26: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from c-interface-mogul.cc:30: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from c-interface-ligands-gui.cc:54: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72, - from c-interface-maps.cc:52: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -10368,25 +10374,12 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from c-interface-mogul.cc:30: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mutate.cc -fPIC -DPIC -o .libs/c-interface-mutate.o -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../coot-utils/coot-map-utils.hh:33, + from c-interface-maps.cc:38: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -10408,27 +10401,25 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from c-interface-mogul-scripting.cc:26: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from c-interface-mmdb.cc:40: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-mutate.lo c-interface-mutate.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ncs.lo c-interface-ncs.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-network.lo c-interface-network.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-mutate.cc -fPIC -DPIC -o .libs/c-interface-mutate.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72: + from graphics-info.h:72, + from c-interface-image.cc:47: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -10446,11 +10437,24 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-network.cc -fPIC -DPIC -o .libs/c-interface-network.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ncs.cc -fPIC -DPIC -o .libs/c-interface-ncs.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, - from c-interface-image.cc:47: + from c-interface-mogul.cc:33: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -10468,23 +10472,13 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -c-interface-info.cc: In function 'PyObject* get_pointer_position_frac_py()': -c-interface-info.cc:2631:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2631 | std::pair xy = g.get_pointer_position_frac(); - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-ncs.lo c-interface-ncs.cc -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-ncs.cc -fPIC -DPIC -o .libs/c-interface-ncs.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-network.lo c-interface-network.cc +In file included from command-arg.hh:33, + from graphics-info.h:66, + from c-interface-mmdb.cc:40: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -10498,24 +10492,10 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-network.cc -fPIC -DPIC -o .libs/c-interface-network.o -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from cc-interface.hh:39, - from c-interface-ligands-gui.cc:57: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72, - from c-interface-mogul.cc:33: + from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -10533,11 +10513,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -10551,16 +10526,17 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:39, + from c-interface-ligands-gui.cc:57: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from c-interface-maps.cc:60: -../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': -../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 139 | std::pair median_and_iqr() const { - | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -10580,48 +10556,11 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from c-interface-mutate.cc:49: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from c-interface-ncs.cc:48: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72: + from graphics-info.h:72, + from c-interface-maps.cc:52: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -10639,12 +10578,17 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from cc-interface.hh:37, - from c-interface-network.cc:46: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +c-interface-info.cc: In function 'PyObject* get_pointer_position_frac_py()': +c-interface-info.cc:2631:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2631 | std::pair xy = g.get_pointer_position_frac(); + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-nucleotides.lo c-interface-nucleotides.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-nucleotides.cc -fPIC -DPIC -o .libs/c-interface-nucleotides.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': @@ -10664,6 +10608,11 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ c-interface-image.cc: In function 'GtkWidget* get_image_widget_for_comp_id(const std::string&, int)': c-interface-image.cc:132:45: warning: 'GtkWidget* gtk_image_new_from_pixbuf(GdkPixbuf*)' is deprecated: Use 'gtk_image_new_from_paintable' instead [-Wdeprecated-declarations] 132 | r = gtk_image_new_from_pixbuf(pixbuf); @@ -10675,6 +10624,11 @@ /usr/include/gtk-4.0/gtk/gtkimage.h:78:12: note: declared here 78 | GtkWidget* gtk_image_new_from_pixbuf (GdkPixbuf *pixbuf); | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -10688,6 +10642,12 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:37, + from c-interface-network.cc:46: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ c-interface-mogul.cc: In function 'GtkCellRenderer* coot::mogul_results_add_cell_renderer(GtkTreeView*, GtkTreeStore*, const std::string&, int, int)': c-interface-mogul.cc:218:63: warning: 'GtkCellRenderer* gtk_cell_renderer_text_new()' is deprecated [-Wdeprecated-declarations] 218 | GtkCellRenderer *cell_renderer = gtk_cell_renderer_text_new(); @@ -10990,6 +10950,112 @@ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from c-interface-ncs.cc:48: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from c-interface-mutate.cc:49: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from c-interface-maps.cc:60: +../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': +../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 139 | std::pair median_and_iqr() const { + | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from c-interface-ncs.cc:51: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -11017,10 +11083,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-nucleotides.lo c-interface-nucleotides.cc In file included from command-arg.hh:33, from graphics-info.h:66, - from c-interface-ncs.cc:51: + from c-interface-nucleotides.cc:39: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -11046,7 +11111,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-nucleotides.cc -fPIC -DPIC -o .libs/c-interface-nucleotides.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': @@ -11076,20 +11140,49 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-pisa.lo c-interface-pisa.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-pisa.cc -fPIC -DPIC -o .libs/c-interface-pisa.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-pisa-gui.lo c-interface-pisa-gui.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-pisa.lo c-interface-pisa.cc +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:39, + from c-interface-nucleotides.cc:59: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-pisa.cc -fPIC -DPIC -o .libs/c-interface-pisa.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -11116,7 +11209,6 @@ /usr/include/aarch64-linux-gnu/curl/curl.h:2880:3: note: declared here 2880 | CURLINFO_SIZE_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-pisa-gui.cc -fPIC -DPIC -o .libs/c-interface-pisa-gui.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -11136,68 +11228,18 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from c-interface-nucleotides.cc:39: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-preferences.lo c-interface-preferences.cc -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-python.lo c-interface-python.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-refine.lo c-interface-refine.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-pisa-gui.lo c-interface-pisa-gui.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-pisa-gui.cc -fPIC -DPIC -o .libs/c-interface-pisa-gui.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-preferences.lo c-interface-preferences.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-preferences.cc -fPIC -DPIC -o .libs/c-interface-preferences.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-python.lo c-interface-python.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-refine.lo c-interface-refine.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-python.cc -fPIC -DPIC -o .libs/c-interface-python.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-refine.cc -fPIC -DPIC -o .libs/c-interface-refine.o -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ c-interface-ncs.cc: In function 'std::vector make_ncs_maps(int, int)': c-interface-ncs.cc:954:115: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 954 | graphics_info_t::molecules[imol_model].chain_centre_and_radius(ncs_ghosts[ighst].target_chain_id); | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-refine.cc -fPIC -DPIC -o .libs/c-interface-refine.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-pisa.cc:34: @@ -11205,12 +11247,6 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from cc-interface.hh:39, - from c-interface-nucleotides.cc:59: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -11232,24 +11268,22 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-residues.lo c-interface-residues.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 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-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-refmac.lo c-interface-refmac.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 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-DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-refmac.lo simple-refmac.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-refmac.cc -fPIC -DPIC -o .libs/c-interface-refmac.o -In file included from command-arg.hh:33, - from graphics-info.h:66, - from c-interface-pisa-gui.cc:32: +In file included from c-interface-python.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from c-interface-python.cc:35: +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-refmac.cc -fPIC -DPIC -o .libs/c-interface-refmac.o +In file included from command-arg.hh:33, + from graphics-info.h:66, + from c-interface-pisa-gui.cc:32: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-refmac.cc -fPIC -DPIC -o .libs/simple-refmac.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -11276,37 +11310,6 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from c-interface-pisa.cc:32: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-scm.lo c-interface-scm.cc -In file included from cc-interface.hh:39, - from c-interface-pisa.cc:37: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-scm.cc -fPIC -DPIC -o .libs/c-interface-scm.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-preferences.cc:64: @@ -11314,6 +11317,7 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o simple-refmac.lo simple-refmac.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -11335,8 +11339,22 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from cc-interface.hh:37, - from c-interface-refmac.cc:32: +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c simple-refmac.cc -fPIC -DPIC -o .libs/simple-refmac.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from ../mini-mol/mini-mol.hh:29, + from ../coot-utils/coot-coord-extras.hh:33, + from ../coot-utils/glyco-tree.hh:32, + from c-interface-residues.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -11363,20 +11381,35 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from c-interface-pisa.cc:32: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from ../coot-utils/coot-coord-extras.hh:33, - from ../coot-utils/glyco-tree.hh:32, - from c-interface-residues.cc:37: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from cc-interface.hh:39, + from c-interface-pisa.cc:37: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -11389,6 +11422,12 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:37, + from c-interface-refmac.cc:32: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from cc-interface.hh:39, from c-interface-pisa-gui.cc:35: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -11531,72 +11570,9 @@ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from c-interface-refine.cc:41: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from c-interface-scm.cc:32: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sequence.lo c-interface-sequence.cc -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72, - from c-interface-refmac.cc:33: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-scm.lo c-interface-scm.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sequence.lo c-interface-sequence.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sfs.lo c-interface-sfs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sequence.cc -fPIC -DPIC -o .libs/c-interface-sequence.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: @@ -11604,59 +11580,13 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-scm.cc -fPIC -DPIC -o .libs/c-interface-scm.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72, - from c-interface-residues.cc:40: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from command-arg.hh:33, - from graphics-info.h:66, - from simple-refmac.cc:35: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sfs.cc -fPIC -DPIC -o .libs/c-interface-sfs.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -11717,7 +11647,8 @@ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72: + from graphics-info.h:72, + from c-interface-residues.cc:40: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -11735,28 +11666,16 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sfs.lo c-interface-sfs.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, - from c-interface-scm.cc:35: + from c-interface-refmac.cc:33: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ @@ -11769,6 +11688,42 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from command-arg.hh:33, + from graphics-info.h:66, + from c-interface-refine.cc:41: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sharpen.lo c-interface-sharpen.cc +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sharpen.cc -fPIC -DPIC -o .libs/c-interface-sharpen.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -11782,54 +11737,44 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from cc-interface.hh:39, - from c-interface-refine.cc:55: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sfs.cc -fPIC -DPIC -o .libs/c-interface-sfs.o -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +In file included from c-interface-scm.cc:32: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-sharpen.lo c-interface-sharpen.cc -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from cc-interface.hh:30: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from c-interface-sfs.cc:36: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-sharpen.cc -fPIC -DPIC -o .libs/c-interface-sharpen.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from simple-refmac.cc:35: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': @@ -11849,6 +11794,34 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from command-arg.hh:33, + from graphics-info.h:66, + from c-interface-sequence.cc:34: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -11857,22 +11830,38 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: + from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from c-interface-sfs.cc:36: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-superpose.lo c-interface-superpose.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -11886,9 +11875,27 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:39, + from c-interface-refine.cc:55: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-superpose.cc -fPIC -DPIC -o .libs/c-interface-superpose.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-validate.lo c-interface-validate.cc In file included from command-arg.hh:33, from graphics-info.h:66, - from c-interface-sequence.cc:34: + from c-interface-sharpen.cc:29: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -11896,6 +11903,28 @@ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, + from graphics-info.h:72, + from c-interface-scm.cc:35: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -11914,13 +11943,53 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-validate.cc -fPIC -DPIC -o .libs/c-interface-validate.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-view.lo c-interface-view.cc +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-view.cc -fPIC -DPIC -o .libs/c-interface-view.o +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-widgets.lo c-interface-widgets.cc +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from c-interface-sequence.cc:28: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:39, from simple-refmac.cc:37: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-superpose.lo c-interface-superpose.cc simple-refmac.cc: In function 'void wrapped_create_simple_refmac_dialog()': simple-refmac.cc:63:37: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 63 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(combobox_file), @@ -11938,25 +12007,51 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-superpose.cc -fPIC -DPIC -o .libs/c-interface-superpose.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-validate.lo c-interface-validate.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-view.lo c-interface-view.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-validate.cc -fPIC -DPIC -o .libs/c-interface-validate.o +In file included from /usr/include/c++/14/istream:41, + from /usr/include/c++/14/sstream:40, + from ../validation-graphs/../geometry/residue-and-atom-specs.hh:26, + from ../validation-graphs/residue-validation-information.hh:30, + from ../validation-graphs/validation-information.hh:30, + from graphics-info.h:32: +In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(const void*) [with _CharT = char; _Traits = std::char_traits]', + inlined from 'void update_preference_gui()' at c-interface-preferences.cc:452:86: +/usr/include/c++/14/ostream:299:25: warning: 'colour_button' may be used uninitialized [-Wmaybe-uninitialized] + 299 | { return _M_insert(__p); } + | ~~~~~~~~~^~~~~ +c-interface-preferences.cc: In function 'void update_preference_gui()': +c-interface-preferences.cc:225:14: note: 'colour_button' was declared here + 225 | GtkWidget *colour_button; + | ^~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-widgets.cc -fPIC -DPIC -o .libs/c-interface-widgets.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-view.cc -fPIC -DPIC -o .libs/c-interface-view.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-widgets.lo c-interface-widgets.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from c-interface-validate.cc:49: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-waters.lo c-interface-waters.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-widgets.cc -fPIC -DPIC -o .libs/c-interface-widgets.o +In file included from cc-interface.hh:37, + from c-interface-view.cc:33: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -11965,76 +12060,20 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from c-interface-sequence.cc:28: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-waters.cc -fPIC -DPIC -o .libs/c-interface-waters.o -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from c-interface-validate.cc:49: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-waters.lo c-interface-waters.cc +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from c-interface-sharpen.cc:29: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from /usr/include/c++/14/istream:41, - from /usr/include/c++/14/sstream:40, - from ../validation-graphs/../geometry/residue-and-atom-specs.hh:26, - from ../validation-graphs/residue-validation-information.hh:30, - from ../validation-graphs/validation-information.hh:30, - from graphics-info.h:32: -In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(const void*) [with _CharT = char; _Traits = std::char_traits]', - inlined from 'void update_preference_gui()' at c-interface-preferences.cc:452:86: -/usr/include/c++/14/ostream:299:25: warning: 'colour_button' may be used uninitialized [-Wmaybe-uninitialized] - 299 | { return _M_insert(__p); } - | ~~~~~~~~~^~~~~ -c-interface-preferences.cc: In function 'void update_preference_gui()': -c-interface-preferences.cc:225:14: note: 'colour_button' was declared here - 225 | GtkWidget *colour_button; - | ^~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-waters-gui.lo c-interface-waters-gui.cc -In file included from cc-interface.hh:37, - from c-interface-view.cc:33: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-waters-gui.cc -fPIC -DPIC -o .libs/c-interface-waters-gui.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface.lo c-interface.cc -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface.cc -fPIC -DPIC -o .libs/c-interface.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-waters-gui.lo c-interface-waters-gui.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-waters.cc -fPIC -DPIC -o .libs/c-interface-waters.o In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-validate.cc:52: @@ -12042,6 +12081,19 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -12091,29 +12143,14 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-test.lo c-interface-test.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface-waters-gui.cc -fPIC -DPIC -o .libs/c-interface-waters-gui.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface.lo c-interface.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o c-interface-test.lo c-interface-test.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-alignment.lo cc-interface-alignment.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c c-interface.cc -fPIC -DPIC -o .libs/c-interface.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, - from c-interface-waters.cc:47: + from c-interface-widgets.cc:35: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -12141,58 +12178,12 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-alignment.lo cc-interface-alignment.cc -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from c-interface-widgets.cc:35: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-graphics.lo cc-interface-graphics.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-alignment.cc -fPIC -DPIC -o .libs/cc-interface-alignment.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from c-interface-waters-gui.cc:46: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-graphics.cc -fPIC -DPIC -o .libs/cc-interface-graphics.o -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from c-interface.cc:91: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from c-interface.cc:96: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from c-interface-waters.cc:51: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-widgets.cc:36: @@ -12200,40 +12191,6 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -12255,6 +12212,37 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from c-interface-waters-gui.cc:46: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-graphics.lo cc-interface-graphics.cc In file included from cc-interface.hh:39, from c-interface-validate.cc:70: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -12284,6 +12272,20 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-merge.lo cc-interface-merge.cc +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from c-interface.cc:91: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-graphics.cc -fPIC -DPIC -o .libs/cc-interface-graphics.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': @@ -12296,6 +12298,19 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from c-interface-waters.cc:47: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from c-interface.cc:96: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-merge.cc -fPIC -DPIC -o .libs/cc-interface-merge.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -12304,18 +12319,10 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: + from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from cc-interface.hh:39, - from c-interface-superpose.cc:46: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-merge.lo cc-interface-merge.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -12324,10 +12331,17 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from cc-interface.hh:30: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:39, + from c-interface-superpose.cc:46: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from c-interface-waters-gui.cc:50: @@ -12335,13 +12349,6 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-merge.cc -fPIC -DPIC -o .libs/cc-interface-merge.o -In file included from cc-interface.hh:37, - from cc-interface-graphics.cc:27: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -12363,7 +12370,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-molecular-representation.lo cc-interface-molecular-representation.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -12386,24 +12392,14 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-molecular-representation.cc -fPIC -DPIC -o .libs/cc-interface-molecular-representation.o -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from command-arg.hh:33, from graphics-info.h:66, - from cc-interface-alignment.cc:41: + from c-interface-waters.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-molecular-representation.lo cc-interface-molecular-representation.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -12425,50 +12421,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from c-interface-test.cc:89: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from c-interface-test.cc:94: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72, - from cc-interface-graphics.cc:31: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -12502,19 +12454,6 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:144:12: note: declared here 144 | GtkWidget* gtk_dialog_add_button (GtkDialog *dialog, | ^~~~~~~~~~~~~~~~~~~~~ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface-widgets.cc: In function 'void simple_text_dialog(const std::string&, const std::string&, int, int)': c-interface-widgets.cc:608:36: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 608 | GtkWidget *d = gtk_dialog_new(); @@ -12540,12 +12479,81 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from cc-interface.hh:39, - from c-interface-waters.cc:66: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-molecular-representation.cc -fPIC -DPIC -o .libs/cc-interface-molecular-representation.o +In file included from cc-interface.hh:37, + from cc-interface-graphics.cc:27: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from cc-interface-alignment.cc:41: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from c-interface-test.cc:89: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from c-interface-test.cc:94: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -12577,10 +12585,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:474:23: note: declared here 474 | int gtk_widget_get_allocated_height (GtkWidget *widget); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void make_image_povray(const char*)': c-interface.cc:4500:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 4500 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); @@ -12595,15 +12599,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ c-interface.cc: In function 'void sequence_view(int)': c-interface.cc:7653:57: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] 7653 | GtkStyleContext *sc = gtk_widget_get_style_context(button); @@ -12618,11 +12613,48 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:90:10: note: declared here 90 | void gtk_style_context_add_class (GtkStyleContext *context, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:39, + from c-interface-waters.cc:66: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72, + from cc-interface-graphics.cc:31: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-molecular-symmetry.lo cc-interface-molecular-symmetry.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -12651,6 +12683,26 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-molecular-symmetry.cc -fPIC -DPIC -o .libs/cc-interface-molecular-symmetry.o +In file included from cc-interface.hh:39, + from cc-interface-alignment.cc:43: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from cc-interface-merge.cc:38: @@ -12658,13 +12710,11 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from cc-interface-molecular-representation.cc:37: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -12686,7 +12736,18 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-molecular-symmetry.lo cc-interface-molecular-symmetry.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from cc-interface-molecular-representation.cc:37: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -12708,6 +12769,12 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -12716,29 +12783,10 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: + from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from cc-interface.hh:39, - from cc-interface-alignment.cc:43: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-molecular-symmetry.cc -fPIC -DPIC -o .libs/cc-interface-molecular-symmetry.o -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -12747,10 +12795,16 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from cc-interface.hh:30: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from c-interface-test.cc:438: +../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': +../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 139 | std::pair median_and_iqr() const { + | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -12761,12 +12815,23 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-scripting.lo cc-interface-scripting.cc +In file included from cc-interface.hh:37, + from cc-interface-molecular-symmetry.cc:34: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-map-utils.lo cc-interface-map-utils.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-map-utils.cc -fPIC -DPIC -o .libs/cc-interface-map-utils.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-scripting.cc -fPIC -DPIC -o .libs/cc-interface-scripting.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-png.lo cc-interface-png.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -12792,24 +12857,7 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from c-interface-test.cc:438: -../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': -../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 139 | std::pair median_and_iqr() const { - | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-png.cc -fPIC -DPIC -o .libs/cc-interface-png.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -12829,22 +12877,6 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from cc-interface.hh:37, - from cc-interface-molecular-symmetry.cc:34: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-scripting.lo cc-interface-scripting.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-scripting.cc -fPIC -DPIC -o .libs/cc-interface-scripting.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 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-I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' 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-DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o change-dir.lo change-dir.cc c-interface-test.cc: In function 'PyObject* test_function_py(PyObject*, PyObject*)': c-interface-test.cc:1569:31: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1569 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); @@ -12852,8 +12884,7 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cfc.cc -fPIC -DPIC -o .libs/cfc.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c change-dir.cc -fPIC -DPIC -o .libs/change-dir.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cc-interface-user-defined-atom-colours.lo cc-interface-user-defined-atom-colours.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -12876,42 +12907,35 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cmtz-interface.lo cmtz-interface.cc -In file included from change-dir.cc:39: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o command-line.lo command-line.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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-D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cmtz-interface.cc -fPIC -DPIC -o .libs/cmtz-interface.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c command-line.cc -fPIC -DPIC -o .libs/command-line.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cfc.lo cfc.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cc-interface-user-defined-atom-colours.cc -fPIC -DPIC -o .libs/cc-interface-user-defined-atom-colours.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cfc.cc -fPIC -DPIC -o .libs/cfc.o In file included from cc-interface-png.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o command-line-extern.lo command-line-extern.cc -In file included from cc-interface.hh:37, - from cc-interface-user-defined-atom-colours.cc:27: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c command-line-extern.cc -fPIC -DPIC -o .libs/command-line-extern.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-application.lo coot-application.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-application.cc -fPIC -DPIC -o .libs/coot-application.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o change-dir.lo change-dir.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c change-dir.cc -fPIC -DPIC -o .libs/change-dir.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o cmtz-interface.lo cmtz-interface.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from change-dir.cc:39: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, - from cc-interface-scripting.cc:43: + from cc-interface-map-utils.cc:30: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o command-line.lo command-line.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -12933,31 +12957,19 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72, - from cc-interface-user-defined-atom-colours.cc:29: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c cmtz-interface.cc -fPIC -DPIC -o .libs/cmtz-interface.o +In file included from cc-interface.hh:37, + from cc-interface-user-defined-atom-colours.cc:27: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o command-line-extern.lo command-line-extern.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c command-line.cc -fPIC -DPIC -o .libs/command-line.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-application.lo coot-application.cc In file included from command-arg.hh:33, from graphics-info.h:66, - from cc-interface-map-utils.cc:30: + from cc-interface-scripting.cc:43: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -12983,29 +12995,13 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c command-line-extern.cc -fPIC -DPIC -o .libs/command-line-extern.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from cmtz-interface.cc:53: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from cc-interface.hh:30: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -13028,16 +13024,19 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from cc-interface.hh:30: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-application.cc -fPIC -DPIC -o .libs/coot-application.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -13047,36 +13046,7 @@ from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, - from cmtz-interface.cc:58: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from command-arg.hh:33, - from graphics-info.h:66, - from command-line.cc:61: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-colour.lo coot-colour.cc -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: + from cc-interface-user-defined-atom-colours.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -13094,13 +13064,18 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-colour.cc -fPIC -DPIC -o .libs/coot-colour.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-colour.lo coot-colour.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -13119,18 +13094,19 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-colour.cc -fPIC -DPIC -o .libs/coot-colour.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +In file included from cc-interface.hh:39, + from cc-interface-map-utils.cc:31: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -13139,19 +13115,22 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from c-interface.h:82, - from cc-interface-user-defined-atom-colours.cc:26: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from command-line-extern.cc:41: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-align.lo coot-align.cc +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -13160,22 +13139,25 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: + from cc-interface.hh:30, + from cc-interface-png.cc:53: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from cc-interface.hh:37, - from cfc.cc:44: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-align.lo coot-align.cc +In file included from cmtz-interface.cc:53: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from command-line.cc:61: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-align.cc -fPIC -DPIC -o .libs/coot-align.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -13197,18 +13179,14 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from cc-interface.hh:39, - from cc-interface-map-utils.cc:31: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-align.cc -fPIC -DPIC -o .libs/coot-align.o -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from command-line-extern.cc:41: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-nomenclature.lo coot-nomenclature.cc In file included from command-arg.hh:33, from graphics-info.h:66, from coot-application.cc:28: @@ -13216,6 +13194,27 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': @@ -13243,6 +13242,12 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from cc-interface.hh:37, + from cfc.cc:44: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -13251,11 +13256,46 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from cc-interface.hh:30, - from cc-interface-png.cc:53: + from c-interface.h:82, + from cc-interface-user-defined-atom-colours.cc:26: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from coot-align.cc:35: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72, + from cmtz-interface.cc:58: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-nomenclature.cc -fPIC -DPIC -o .libs/coot-nomenclature.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -13278,21 +13318,93 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from command-line.cc:56: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:39, + from command-line.cc:68: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +/bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o coot-glue-gtk2.lo coot-glue-gtk2.c +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c coot-glue-gtk2.c -fPIC -DPIC -o .libs/coot-glue-gtk2.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-glue-gtk2-python.lo coot-glue-gtk2-python.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from coot-align.cc:35: +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../ideal/simple-restraint.hh:162, + from coot-nomenclature.cc:26: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-hydrogens.lo coot-hydrogens.cc +In file included from cc-interface.hh:39, + from command-line-extern.cc:49: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -13360,59 +13472,22 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-nomenclature.lo coot-nomenclature.cc -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from command-line.cc:56: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-nomenclature.cc -fPIC -DPIC -o .libs/coot-nomenclature.o -In file included from molecule-class-info.h:127: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-phi-psi.lo coot-phi-psi.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-glue-gtk2-python.cc -fPIC -DPIC -o .libs/coot-glue-gtk2-python.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_pythonmodule.lo coot_pythonmodule.cc ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from cc-interface.hh:39, - from command-line.cc:68: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-hydrogens.cc -fPIC -DPIC -o .libs/coot-hydrogens.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-phi-psi.cc -fPIC -DPIC -o .libs/coot-phi-psi.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_pythonmodule.cc -fPIC -DPIC -o .libs/coot_pythonmodule.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -13446,59 +13521,21 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o coot-glue-gtk2.lo coot-glue-gtk2.c -In file included from cc-interface.hh:39, - from command-line-extern.cc:49: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c coot-glue-gtk2.c -fPIC -DPIC -o .libs/coot-glue-gtk2.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-glue-gtk2-python.lo coot-glue-gtk2-python.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-hydrogens.lo coot-hydrogens.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-glue-gtk2-python.cc -fPIC -DPIC -o .libs/coot-glue-gtk2-python.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-hydrogens.cc -fPIC -DPIC -o .libs/coot-hydrogens.o -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-phi-psi.lo coot-phi-psi.cc -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, from cfc-widgets.hh:28, from cfc.cc:40: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot-phi-psi.cc -fPIC -DPIC -o .libs/coot-phi-psi.o -In file included from ../ideal/simple-restraint.hh:162, - from coot-nomenclature.cc:26: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_pythonmodule.lo coot_pythonmodule.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 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-I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_pythonmodule.cc -fPIC -DPIC -o .libs/coot_pythonmodule.o -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 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-DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot-setup-python.lo coot-setup-python.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 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-I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 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-o draw.lo draw.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi 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-I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-tick-function.lo graphics-info-tick-function.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-tick-function.cc -fPIC -DPIC -o .libs/graphics-info-tick-function.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o drag-and-drop.lo drag-and-drop.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../lidia-core/rdkit-interface.hh:29, from coot-hydrogens.cc:28: @@ -13506,10 +13543,7 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o drag-and-drop.lo drag-and-drop.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o draw-generic-display-objects.lo draw-generic-display-objects.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c drag-and-drop.cc -fPIC -DPIC -o .libs/drag-and-drop.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c draw-generic-display-objects.cc -fPIC -DPIC -o .libs/draw-generic-display-objects.o In file included from command-arg.hh:33, from graphics-info.h:66, from coot_pythonmodule.cc:123: @@ -13517,8 +13551,7 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dynamic-validation.lo dynamic-validation.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o eyes.lo eyes.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o draw-generic-display-objects.lo draw-generic-display-objects.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -13540,6 +13573,8 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o dynamic-validation.lo dynamic-validation.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c draw-generic-display-objects.cc -fPIC -DPIC -o .libs/draw-generic-display-objects.o In file included from cc-interface.hh:37, from coot-setup-python.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': @@ -13547,61 +13582,33 @@ 209 | std::pair weight_abscissa(int idx) { | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c dynamic-validation.cc -fPIC -DPIC -o .libs/dynamic-validation.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c eyes.cc -fPIC -DPIC -o .libs/eyes.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 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-Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o event-controller-callbacks.lo event-controller-callbacks.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o eyes.lo eyes.cc In file included from curlew-gtk4.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fit-loop-gui.lo fit-loop-gui.cc -In file included from draw-generic-display-objects.cc:36: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c event-controller-callbacks.cc -fPIC -DPIC -o .libs/event-controller-callbacks.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" 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-DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o event-controller-callbacks.lo event-controller-callbacks.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c eyes.cc -fPIC -DPIC -o .libs/eyes.o In file included from cc-interface.hh:37, from drag-and-drop.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from draw.cc:35: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o fit-loop-gui.lo fit-loop-gui.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flev.lo flev.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c event-controller-callbacks.cc -fPIC -DPIC -o .libs/event-controller-callbacks.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c fit-loop-gui.cc -fPIC -DPIC -o .libs/fit-loop-gui.o +In file included from draw-generic-display-objects.cc:36: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -13624,7 +13631,13 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flev.cc -fPIC -DPIC -o .libs/flev.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o flev.lo flev.cc +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -13649,17 +13662,11 @@ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-tick-function.cc:43: + from draw.cc:35: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -13681,11 +13688,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -13698,11 +13700,18 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c flev.cc -fPIC -DPIC -o .libs/flev.o +In file included from command-arg.hh:33, + from graphics-info.h:66, + from graphics-info-tick-function.cc:43: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72, - from draw-generic-display-objects.cc:38: + from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -13720,6 +13729,13 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o framebuffer.lo framebuffer.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c framebuffer.cc -fPIC -DPIC -o .libs/framebuffer.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -13730,24 +13746,17 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o framebuffer.lo framebuffer.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from dynamic-validation.cc:27: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72: + from graphics-info.h:72, + from draw-generic-display-objects.cc:38: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -13765,7 +13774,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c framebuffer.cc -fPIC -DPIC -o .libs/framebuffer.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -13774,21 +13782,25 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: + from coot-setup-python.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +coot-setup-python.cc: In function 'void setup_python_basic(int, char**)': +coot-setup-python.cc:71:17: warning: 'void PySys_SetArgv(int, wchar_t**)' is deprecated [-Wdeprecated-declarations] + 71 | PySys_SetArgv(argc, _argv); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /usr/include/python3.13/Python.h:125, + from coot-setup-python.cc:24: +/usr/include/python3.13/sysmodule.h:10:38: note: declared here + 10 | Py_DEPRECATED(3.11) PyAPI_FUNC(void) PySys_SetArgv(int, wchar_t **); + | ^~~~~~~~~~~~~ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from event-controller-callbacks.cc:31: @@ -13796,6 +13808,11 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -13817,18 +13834,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -13837,19 +13842,11 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from coot-setup-python.cc:30: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -coot-setup-python.cc: In function 'void setup_python_basic(int, char**)': -coot-setup-python.cc:71:17: warning: 'void PySys_SetArgv(int, wchar_t**)' is deprecated [-Wdeprecated-declarations] - 71 | PySys_SetArgv(argc, _argv); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/python3.13/Python.h:125, - from coot-setup-python.cc:24: -/usr/include/python3.13/sysmodule.h:10:38: note: declared here - 10 | Py_DEPRECATED(3.11) PyAPI_FUNC(void) PySys_SetArgv(int, wchar_t **); - | ^~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from fit-loop-gui.cc:34: @@ -13857,10 +13854,15 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from probe-clash-score.hh:32, - from ligand-check.hh:30, - from c-interface-ligands.hh:34, - from flev.cc:37: +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from dynamic-validation.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -13873,12 +13875,6 @@ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ @@ -13892,6 +13888,34 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o old-generic-display-object.lo old-generic-display-object.cc +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -13905,18 +13929,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o old-generic-display-object.lo old-generic-display-object.cc -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -13930,46 +13942,32 @@ 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c old-generic-display-object.cc -fPIC -DPIC -o .libs/old-generic-display-object.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gaussian-surface.lo gaussian-surface.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -draw-generic-display-objects.cc: In static member function 'static void graphics_info_t::draw_generic_objects(unsigned int)': -draw-generic-display-objects.cc:213:47: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 213 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gaussian-surface.lo gaussian-surface.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o generic-objects.lo generic-objects.cc +In file included from probe-clash-score.hh:32, + from ligand-check.hh:30, + from c-interface-ligands.hh:34, + from flev.cc:37: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o generic-objects.lo generic-objects.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gaussian-surface.cc -fPIC -DPIC -o .libs/gaussian-surface.o -In file included from c-interface-ligands.hh:35: +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from flev.cc:39: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c generic-objects.cc -fPIC -DPIC -o .libs/generic-objects.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: @@ -13977,13 +13975,7 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from molecule-class-info.h:127: +In file included from c-interface-ligands.hh:35: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { @@ -14001,6 +13993,13 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from flev.cc:39: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ event-controller-callbacks.cc: In lambda function: event-controller-callbacks.cc:168:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 168 | gtk_widget_get_allocation(gl_area, &allocation); @@ -14029,6 +14028,23 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -14037,43 +14053,11 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: + from widget-from-builder.hh:31, + from fit-loop-gui.cc:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o geometry-graphs.lo geometry-graphs.cc -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c geometry-graphs.cc -fPIC -DPIC -o .libs/geometry-graphs.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-residue.lo get-residue.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-residue.cc -fPIC -DPIC -o .libs/get-residue.o -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72, - from flev.cc:41: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -14082,8 +14066,8 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from widget-from-builder.hh:31, - from fit-loop-gui.cc:30: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ @@ -14095,36 +14079,25 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +draw-generic-display-objects.cc: In static member function 'static void graphics_info_t::draw_generic_objects(unsigned int)': +draw-generic-display-objects.cc:213:47: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 213 | gtk_widget_get_allocation(GTK_WIDGET(glareas[0]), &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o geometry-graphs.lo geometry-graphs.cc In file included from cc-interface.hh:37, from gaussian-surface.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from cc-interface.hh:37, - from generic-objects.cc:44: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, - from gaussian-surface.cc:29: + from flev.cc:41: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -14142,6 +14115,12 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from old-generic-display-object.cc:33: @@ -14149,6 +14128,20 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-residue.lo get-residue.cc +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -14170,15 +14163,21 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-monomer.lo get-monomer.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gl-rama-plot.lo gl-rama-plot.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-residue.cc -fPIC -DPIC -o .libs/get-residue.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c geometry-graphs.cc -fPIC -DPIC -o .libs/geometry-graphs.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o get-monomer.lo get-monomer.cc +In file included from cc-interface.hh:37, + from generic-objects.cc:44: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c get-monomer.cc -fPIC -DPIC -o .libs/get-monomer.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gl-rama-plot.cc -fPIC -DPIC -o .libs/gl-rama-plot.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, - from generic-objects.cc:50: + from gaussian-surface.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -14196,22 +14195,17 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gl-rama-plot.lo gl-rama-plot.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from get-residue.cc:34: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72: + from graphics-info.h:72, + from generic-objects.cc:50: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -14229,43 +14223,18 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o globjects.lo globjects.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o globularize.lo globularize.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c globjects.cc -fPIC -DPIC -o .libs/globjects.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info.lo graphics-info.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gl-rama-plot.cc -fPIC -DPIC -o .libs/gl-rama-plot.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c globularize.cc -fPIC -DPIC -o .libs/globularize.o -In file included from cc-interface.hh:39, - from flev.cc:57: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from gl-rama-plot.cc:329: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -gl-rama-plot.cc: In member function 'std::pair, glm::vec<2, float, glm::packed_highp> > gl_rama_plot_t::get_munged_offset_and_scale(screen_position_origins_t, const glm::vec2&, float, float, int, int) const': -gl-rama-plot.cc:418:82: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 - 418 | int glarea_width, int glarea_height) const { - | ^~~~~ In file included from get-monomer.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info.cc -fPIC -DPIC -o .libs/graphics-info.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -14274,22 +14243,11 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from cc-interface.hh:30: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-defines.lo graphics-info-defines.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -14303,18 +14261,35 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-defines.cc -fPIC -DPIC -o .libs/graphics-info-defines.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o globjects.lo globjects.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c globjects.cc -fPIC -DPIC -o .libs/globjects.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o globularize.lo globularize.cc +In file included from gl-rama-plot.cc:329: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info.lo graphics-info.cc +gl-rama-plot.cc: In member function 'std::pair, glm::vec<2, float, glm::packed_highp> > gl_rama_plot_t::get_munged_offset_and_scale(screen_position_origins_t, const glm::vec2&, float, float, int, int) const': +gl-rama-plot.cc:418:82: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 + 418 | int glarea_width, int glarea_height) const { + | ^~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -14323,18 +14298,27 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from generic-objects.cc:40: + from cc-interface.hh:30: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-defines.lo graphics-info-defines.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-defines-gtk4.lo graphics-info-defines-gtk4.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-defines-gtk4.cc -fPIC -DPIC -o .libs/graphics-info-defines-gtk4.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c globularize.cc -fPIC -DPIC -o .libs/globularize.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info.cc -fPIC -DPIC -o .libs/graphics-info.o +In file included from command-arg.hh:33, + from graphics-info.h:66, + from get-residue.cc:34: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-defines.cc -fPIC -DPIC -o .libs/graphics-info-defines.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -14343,16 +14327,14 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: + from generic-objects.cc:40: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72, - from get-monomer.cc:29: + from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -14370,33 +14352,11 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-draw.lo graphics-info-draw.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-draw.cc -fPIC -DPIC -o .libs/graphics-info-draw.o -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from graphics-info.cc:64: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-draw-models.lo graphics-info-draw-models.cc -In file included from command-arg.hh:33, - from graphics-info.h:66, - from globularize.cc:31: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-draw-models.cc -fPIC -DPIC -o .libs/graphics-info-draw-models.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72: + from graphics-info.h:72, + from get-monomer.cc:29: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -14414,6 +14374,26 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-defines-gtk4.lo graphics-info-defines-gtk4.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-draw.lo graphics-info-draw.cc +In file included from cc-interface.hh:39, + from flev.cc:57: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-defines-gtk4.cc -fPIC -DPIC -o .libs/graphics-info-defines-gtk4.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-draw.cc -fPIC -DPIC -o .libs/graphics-info-draw.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': @@ -14433,6 +14413,34 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-draw-models.lo graphics-info-draw-models.cc +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from graphics-info.cc:64: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-draw-models.cc -fPIC -DPIC -o .libs/graphics-info-draw-models.o In file included from cc-interface.hh:39, from get-monomer.cc:34: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -14441,7 +14449,7 @@ | ^ In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info.cc:72: + from globularize.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -14467,11 +14475,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-graphs.lo graphics-info-graphs.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-graphs.cc -fPIC -DPIC -o .libs/graphics-info-graphs.o In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-defines.cc:36: + from graphics-info.cc:72: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -14497,6 +14503,13 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-graphs.lo graphics-info-graphs.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-graphs.cc -fPIC -DPIC -o .libs/graphics-info-graphs.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-defines-gtk4.cc:27: @@ -14530,29 +14543,43 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-gui.lo graphics-info-gui.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-init.lo graphics-info-init.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-gui.cc -fPIC -DPIC -o .libs/graphics-info-gui.o +In file included from command-arg.hh:33, + from graphics-info.h:66, + from graphics-info-defines.cc:36: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-init.cc -fPIC -DPIC -o .libs/graphics-info-init.o In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-draw-models.cc:27: + from graphics-info-draw.cc:48: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -14570,13 +14597,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from graphics-info-draw.cc:48: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -14598,6 +14618,39 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-gui.lo graphics-info-gui.cc +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from graphics-info.cc:43: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-gui.cc -fPIC -DPIC -o .libs/graphics-info-gui.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from cc-interface.hh:39, + from graphics-info.cc:97: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from graphics-info-draw-models.cc:27: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-init.lo graphics-info-init.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -14619,18 +14672,12 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from graphics-info.cc:43: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-init.cc -fPIC -DPIC -o .libs/graphics-info-init.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -14642,12 +14689,6 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from cc-interface.hh:39, - from graphics-info.cc:97: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -14661,18 +14702,12 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from graphics-info-graphs.cc:51: +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': @@ -14697,42 +14732,9 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from graphics-info-graphs.cc:60: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from graphics-info-graphs.cc:51: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -14749,40 +14751,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -graphics-info-draw-models.cc: In static member function 'static void graphics_info_t::draw_models_for_ssao()': -graphics-info-draw-models.cc:37:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 37 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -graphics-info-draw-models.cc: In static member function 'static void graphics_info_t::draw_molecules_for_ssao()': -graphics-info-draw-models.cc:58:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 58 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from graphics-info-gui.cc:63: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ graphics-info-draw.cc: In static member function 'static glm::mat4 graphics_info_t::get_molecule_mvp(bool)': graphics-info-draw.cc:632:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 632 | gtk_widget_get_allocation(graphics_info_t::glareas[0], &allocation); @@ -14953,9 +14921,30 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-intermediate.lo graphics-info-intermediate.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-modelling.lo graphics-info-modelling.cc +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-init.cc:32: + from graphics-info-graphs.cc:60: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -14981,7 +14970,29 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-intermediate.lo graphics-info-intermediate.cc +graphics-info-draw-models.cc: In static member function 'static void graphics_info_t::draw_models_for_ssao()': +graphics-info-draw-models.cc:37:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 37 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +graphics-info-draw-models.cc: In static member function 'static void graphics_info_t::draw_molecules_for_ssao()': +graphics-info-draw-models.cc:58:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 58 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from graphics-info-gui.cc:63: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-intermediate.cc -fPIC -DPIC -o .libs/graphics-info-intermediate.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-modelling.cc -fPIC -DPIC -o .libs/graphics-info-modelling.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-gui.cc:71: @@ -15015,23 +15026,41 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-intermediate.cc -fPIC -DPIC -o .libs/graphics-info-intermediate.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-modelling.lo graphics-info-modelling.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 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-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 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-Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-navigation.cc -fPIC -DPIC -o .libs/graphics-info-navigation.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-navigation-gtk2.cc -fPIC -DPIC -o .libs/graphics-info-navigation-gtk2.o -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-navigation.lo graphics-info-navigation.cc +In file included from command-arg.hh:33, + from graphics-info.h:66, + from graphics-info-init.cc:32: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-navigation.cc -fPIC -DPIC -o .libs/graphics-info-navigation.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -15045,7 +15074,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-preferences.lo graphics-info-preferences.cc In file included from ../coot-utils/coot-map-utils.hh:33, from graphics-info-graphs.cc:83: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -15125,15 +15153,18 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here 81 | void gtk_list_store_set (GtkListStore *list_store, | ^~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-network.lo graphics-info-network.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-preferences.cc -fPIC -DPIC -o .libs/graphics-info-preferences.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-network.cc -fPIC -DPIC -o .libs/graphics-info-network.o -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-navigation-gtk2.lo graphics-info-navigation-gtk2.cc +graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_refinement_dialog_arrow_tab()': +graphics-info-draw.cc:1686:105: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1686 | auto p_s = get_munged_offset_and_scale(HUDTextureMesh::TOP_RIGHT, position_natural, 1.0, 1.0, w, h); + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-preferences.lo graphics-info-preferences.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-navigation-gtk2.cc -fPIC -DPIC -o .libs/graphics-info-navigation-gtk2.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -15146,19 +15177,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In static member function 'static void graphics_info_t::show_refinement_and_regularization_parameters_frame()': graphics-info-gui.cc:136:33: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 136 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(overall_weight_combobox)); @@ -15207,10 +15225,6 @@ graphics-info-gui.cc:464:35: warning: 'gboolean gtk_file_chooser_set_file(GtkFileChooser*, GFile*, GError**)' is deprecated [-Wdeprecated-declarations] 464 | gtk_file_chooser_set_file(GTK_FILE_CHOOSER(filechooser), file, &error); // deprecated | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -graphics-info-init.cc: In member function 'void graphics_info_t::init()': -graphics-info-init.cc:485:55: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] - 485 | validation_graph_model_list = gtk_list_store_new(2,G_TYPE_STRING,G_TYPE_INT); - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:121:22: note: declared here 121 | gboolean gtk_file_chooser_set_file (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~ @@ -15220,20 +15234,6 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, - from /usr/include/gtk-4.0/gtk/gtkentry.h:39, - from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, - from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, - from /usr/include/gtk-4.0/gtk/gtk.h:94: -/usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here - 63 | GtkListStore *gtk_list_store_new (int n_columns, - | ^~~~~~~~~~~~~~~~~~ -graphics-info-init.cc:488:56: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] - 488 | ramachandran_plot_model_list = gtk_list_store_new(2,G_TYPE_STRING,G_TYPE_INT); - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here - 63 | GtkListStore *gtk_list_store_new (int n_columns, - | ^~~~~~~~~~~~~~~~~~ graphics-info-gui.cc: In member function 'GtkWidget* graphics_info_t::dialog_box_of_buttons_internal(const std::string&, const std::vector, std::allocator >, void (*)(), void*> >&, const std::string&)': graphics-info-gui.cc:664:38: warning: 'GtkWidget* gtk_dialog_new()' is deprecated [-Wdeprecated-declarations] 664 | GtkWidget *dialog = gtk_dialog_new(); @@ -15249,6 +15249,8 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkdialog.h:172:13: note: declared here 172 | GtkWidget * gtk_dialog_get_content_area (GtkDialog *dialog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-preferences.cc -fPIC -DPIC -o .libs/graphics-info-preferences.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-network.lo graphics-info-network.cc graphics-info-gui.cc:694:25: warning: 'GtkWidget* gtk_dialog_add_button(GtkDialog*, const char*, int)' is deprecated [-Wdeprecated-declarations] 694 | gtk_dialog_add_button(GTK_DIALOG(dialog), close_button_label.c_str(), GTK_RESPONSE_CLOSE); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -15517,7 +15519,6 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-mutate.lo graphics-info-mutate.cc graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': graphics-info-gui.cc:4509:46: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4509 | graphics_info_t::get_pointer_position_frac() const { @@ -15528,9 +15529,9 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from graphics-info-navigation.cc:54: +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-network.cc -fPIC -DPIC -o .libs/graphics-info-network.o +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -15542,14 +15543,41 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-mutate.cc -fPIC -DPIC -o .libs/graphics-info-mutate.o -graphics-info-draw.cc: In static member function 'static void graphics_info_t::draw_hud_refinement_dialog_arrow_tab()': -graphics-info-draw.cc:1686:105: note: parameter passing for argument of type 'std::pair, glm::vec<2, float, glm::packed_highp> >' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1686 | auto p_s = get_munged_offset_and_scale(HUDTextureMesh::TOP_RIGHT, position_natural, 1.0, 1.0, w, h); - | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-mutate.lo graphics-info-mutate.cc +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +graphics-info-init.cc: In member function 'void graphics_info_t::init()': +graphics-info-init.cc:485:55: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] + 485 | validation_graph_model_list = gtk_list_store_new(2,G_TYPE_STRING,G_TYPE_INT); + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26, + from /usr/include/gtk-4.0/gtk/gtkentry.h:39, + from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, + from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26, + from /usr/include/gtk-4.0/gtk/gtk.h:94: +/usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here + 63 | GtkListStore *gtk_list_store_new (int n_columns, + | ^~~~~~~~~~~~~~~~~~ +graphics-info-init.cc:488:56: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] + 488 | ramachandran_plot_model_list = gtk_list_store_new(2,G_TYPE_STRING,G_TYPE_INT); + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here + 63 | GtkListStore *gtk_list_store_new (int n_columns, + | ^~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-navigation.cc:61: + from graphics-info-intermediate.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -15575,6 +15603,14 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-mutate.cc -fPIC -DPIC -o .libs/graphics-info-mutate.o +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from graphics-info-navigation.cc:54: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-modelling.cc:80: @@ -15603,39 +15639,19 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from command-arg.hh:33, - from graphics-info.h:66, - from graphics-info-intermediate.cc:33: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': +graphics-info-gui.cc:3101:1: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 + 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { + | ^~~~~~~~~~~~~~~ +graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': +graphics-info-gui.cc:4509:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 4509 | graphics_info_t::get_pointer_position_frac() const { + | ^~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-navigation-gtk2.cc:42: @@ -15645,7 +15661,7 @@ | ^ In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-network.cc:33: + from graphics-info-navigation.cc:61: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -15659,6 +15675,12 @@ 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ @@ -15692,9 +15714,22 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-preferences.cc:35: + from graphics-info-network.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -15720,10 +15755,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': -graphics-info-gui.cc:3101:1: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 - 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { - | ^~~~~~~~~~~~~~~ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from graphics-info-mutate.cc:53: @@ -15731,10 +15762,33 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': -graphics-info-gui.cc:4509:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 4509 | graphics_info_t::get_pointer_position_frac() const { - | ^~~~~~~~~~~~~~~ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from graphics-info-modelling.cc:48: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -15747,12 +15801,24 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from cc-interface.hh:39, from graphics-info-navigation.cc:63: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from graphics-info-preferences.cc:35: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ graphics-info-navigation.cc: In member function 'void graphics_info_t::update_go_to_atom_window_on_new_mol()': graphics-info-navigation.cc:825:28: warning: 'void gtk_cell_layout_clear(GtkCellLayout*)' is deprecated [-Wdeprecated-declarations] 825 | gtk_cell_layout_clear(GTK_CELL_LAYOUT(combobox)); @@ -15809,43 +15875,31 @@ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from graphics-info-modelling.cc:48: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': +graphics-info-gui.cc:3101:1: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 + 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { + | ^~~~~~~~~~~~~~~ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info-modelling.cc: In static member function 'static void graphics_info_t::move_molecule_here_combobox_changed(GtkWidget*, gpointer)': graphics-info-modelling.cc:5576:50: warning: 'gboolean gtk_combo_box_get_active_iter(GtkComboBox*, GtkTreeIter*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 5576 | gboolean state = gtk_combo_box_get_active_iter(GTK_COMBO_BOX(combobox), &iter); @@ -15868,24 +15922,6 @@ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:333:19: note: declared here 333 | void gtk_tree_model_get_value (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-mutate.cc:61: @@ -15914,6 +15950,22 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': +graphics-info-gui.cc:4509:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 4509 | graphics_info_t::get_pointer_position_frac() const { + | ^~~~~~~~~~~~~~~ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -15922,7 +15974,8 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from graphics-info-navigation-gtk2.cc:28: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ @@ -15934,8 +15987,7 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: + from graphics-info-navigation-gtk2.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ @@ -16315,6 +16367,16 @@ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -16323,8 +16385,7 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: + from graphics-info-mutate.cc:58: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ @@ -16334,6 +16395,7 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-lsq.lo graphics-info-lsq.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -16346,6 +16408,7 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-lsq.cc -fPIC -DPIC -o .libs/graphics-info-lsq.o In file included from cc-interface.hh:39, from graphics-info-preferences.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -16616,62 +16679,30 @@ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:341:19: note: declared here 341 | gboolean gtk_tree_model_iter_next (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~~~~~~~ -graphics-info-gui.cc: In member function 'std::pair, std::pair > graphics_info_t::phi_psi_pairs_from_moving_atoms()': -graphics-info-gui.cc:3101:1: note: parameter passing for argument of type 'std::pair, std::pair >' when C++17 is enabled changed to match C++14 in GCC 10.1 - 3101 | graphics_info_t::phi_psi_pairs_from_moving_atoms() { - | ^~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -graphics-info-gui.cc: In member function 'std::pair graphics_info_t::get_pointer_position_frac() const': -graphics-info-gui.cc:4509:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 4509 | graphics_info_t::get_pointer_position_frac() const { - | ^~~~~~~~~~~~~~~ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from graphics-info-mutate.cc:58: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-lsq.lo graphics-info-lsq.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-opengl.lo graphics-info-opengl.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-pick.lo graphics-info-pick.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-lsq.cc -fPIC -DPIC -o .libs/graphics-info-lsq.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-opengl.lo graphics-info-opengl.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-pick.lo graphics-info-pick.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-refmac.lo graphics-info-refmac.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' 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-DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-refmac.lo graphics-info-refmac.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 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"-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-refmac.cc -fPIC -DPIC -o .libs/graphics-info-refmac.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-render-scene.lo graphics-info-render-scene.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-pick.cc -fPIC -DPIC -o .libs/graphics-info-pick.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include 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.libs/graphics-info-render.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-render-scene.lo graphics-info-render-scene.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-render-scene.cc -fPIC -DPIC -o .libs/graphics-info-render-scene.o -In file included from graphics-info-render-scene.cc:27: -../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': -../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 139 | std::pair median_and_iqr() const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-residues.lo graphics-info-residues.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-residues.lo graphics-info-residues.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-refine.lo graphics-info-refine.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-residues.cc -fPIC -DPIC -o .libs/graphics-info-residues.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-refine.cc -fPIC -DPIC -o .libs/graphics-info-refine.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, - from graphics-info-pick.cc:37: + from graphics-info-lsq.cc:48: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-residues.cc -fPIC -DPIC -o .libs/graphics-info-residues.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-refine.lo graphics-info-refine.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-refine.cc -fPIC -DPIC -o .libs/graphics-info-refine.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, - from graphics-info-lsq.cc:48: + from graphics-info-pick.cc:37: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -16683,6 +16714,11 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from graphics-info-render-scene.cc:27: +../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': +../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 139 | std::pair median_and_iqr() const { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-opengl.cc:38: @@ -16690,6 +16726,13 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from graphics-info-lsq.cc:51: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -16711,13 +16754,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from command-arg.hh:33, - from graphics-info.h:66, - from graphics-info-refmac.cc:79: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -16741,14 +16777,7 @@ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-lsq.cc:51: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from graphics-info-residues.cc:33: + from graphics-info-refmac.cc:79: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -16774,6 +16803,13 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from command-arg.hh:33, + from graphics-info.h:66, + from graphics-info-render.cc:38: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -16797,16 +16833,11 @@ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-render.cc:38: + from graphics-info-pick.cc:42: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -16828,13 +16859,74 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-scripting.lo graphics-info-scripting.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-state.lo graphics-info-state.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-scripting.cc -fPIC -DPIC -o .libs/graphics-info-scripting.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-state.cc -fPIC -DPIC -o .libs/graphics-info-state.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-statics.lo graphics-info-statics.cc In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-pick.cc:42: + from graphics-info-refine.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from graphics-info-lsq.cc:39: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -16856,11 +16948,20 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +graphics-info-opengl.cc: In static member function 'static glm::vec4 graphics_info_t::unproject(float, float, float)': +graphics-info-opengl.cc:350:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 350 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from graphics-info-residues.cc:33: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -16883,37 +16984,7 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from graphics-info-refmac.cc:50: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-scripting.lo graphics-info-scripting.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-scripting.cc -fPIC -DPIC -o .libs/graphics-info-scripting.o -In file included from command-arg.hh:33, - from graphics-info.h:66, - from graphics-info-refine.cc:31: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-statics.cc -fPIC -DPIC -o .libs/graphics-info-statics.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -16935,22 +17006,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': @@ -16965,8 +17020,7 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: + from graphics-info-refmac.cc:50: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ @@ -16983,30 +17037,12 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -graphics-info-opengl.cc: In static member function 'static glm::vec4 graphics_info_t::unproject(float, float, float)': -graphics-info-opengl.cc:350:29: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 350 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from graphics-info-lsq.cc:39: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:39, + from graphics-info-pick.cc:56: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -17020,26 +17056,45 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from cc-interface.hh:39, - from graphics-info-pick.cc:56: + from graphics-info-render.cc:1203: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-state.lo graphics-info-state.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-statics.lo graphics-info-statics.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-state.cc -fPIC -DPIC -o .libs/graphics-info-state.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -17053,19 +17108,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-statics.cc -fPIC -DPIC -o .libs/graphics-info-statics.o -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from cc-interface.hh:39, - from graphics-info-render.cc:1203: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -17085,13 +17127,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-superpose.lo graphics-info-superpose.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -17105,10 +17140,9 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-superpose.cc -fPIC -DPIC -o .libs/graphics-info-superpose.o In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-scripting.cc:34: + from graphics-info-state.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -17134,9 +17168,10 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-superpose.lo graphics-info-superpose.cc In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-statics.cc:32: + from graphics-info-scripting.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -17162,40 +17197,14 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-trackball.lo graphics-info-trackball.cc -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-ligand-view.lo graphics-ligand-view.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-trackball.cc -fPIC -DPIC -o .libs/graphics-info-trackball.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-ligand-view.cc -fPIC -DPIC -o .libs/graphics-ligand-view.o -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-ligand-mesh-molecule.lo graphics-ligand-mesh-molecule.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-superpose.cc -fPIC -DPIC -o .libs/graphics-info-superpose.o In file included from command-arg.hh:33, from graphics-info.h:66, - from graphics-info-state.cc:38: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ + from graphics-info-statics.cc:32: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -17216,8 +17225,54 @@ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-ligand-mesh-molecule.cc -fPIC -DPIC -o .libs/graphics-ligand-mesh-molecule.o ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-info-trackball.lo graphics-info-trackball.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-info-trackball.cc -fPIC -DPIC -o .libs/graphics-info-trackball.o +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from graphics-info-state.cc:34: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:39, + from graphics-info-state.cc:40: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -17237,6 +17292,13 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-ligand-view.lo graphics-ligand-view.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -17263,12 +17325,9 @@ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ -In file included from graphics-ligand-view.hh:21, - from graphics-ligand-view.cc:30: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-ligand-view.cc -fPIC -DPIC -o .libs/graphics-ligand-view.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o graphics-ligand-mesh-molecule.lo graphics-ligand-mesh-molecule.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c graphics-ligand-mesh-molecule.cc -fPIC -DPIC -o .libs/graphics-ligand-mesh-molecule.o In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-info-superpose.cc:33: @@ -17297,33 +17356,69 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from meshed-generic-display-object.hh:30, - from coot-render.hh:40, - from graphics-ligand-view.hh:24: +In file included from command-arg.hh:33, + from graphics-info.h:66, + from graphics-info-trackball.cc:57: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gl-matrix.lo gl-matrix.cc +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gl-matrix.lo gl-matrix.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from graphics-ligand-view.hh:21, + from graphics-ligand-view.cc:30: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtkglarea-rama-plot.lo gtkglarea-rama-plot.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gl-matrix.cc -fPIC -DPIC -o .libs/gl-matrix.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtkglarea-rama-plot.lo gtkglarea-rama-plot.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtkglarea-rama-plot.cc -fPIC -DPIC -o .libs/gtkglarea-rama-plot.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-manual.lo gtk-manual.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-manual.cc -fPIC -DPIC -o .libs/gtk-manual.o +In file included from meshed-generic-display-object.hh:30, + from coot-render.hh:40, + from graphics-ligand-view.hh:24: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtkglarea-rama-plot.cc -fPIC -DPIC -o .libs/gtkglarea-rama-plot.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -17332,51 +17427,21 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from graphics-info-state.cc:34: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from cc-interface.hh:39, - from graphics-info-state.cc:40: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from graphics-info-trackball.cc:57: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-widget-conversion-utils.lo gtk-widget-conversion-utils.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-manual.lo gtk-manual.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-utils.lo gtk-utils.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-widget-conversion-utils.cc -fPIC -DPIC -o .libs/gtk-widget-conversion-utils.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o HUDMesh.lo HUDMesh.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -17390,33 +17455,24 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 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gtk-widget-conversion-utils.lo gtk-widget-conversion-utils.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-widget-conversion-utils.cc -fPIC -DPIC -o .libs/gtk-widget-conversion-utils.o -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o gtk-utils.lo gtk-utils.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c HUDMesh.cc -fPIC -DPIC -o .libs/HUDMesh.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-utils.cc -fPIC -DPIC -o .libs/gtk-utils.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o HUDTextureMesh.lo HUDTextureMesh.cc In file included from cc-interface.hh:37, from gtk-manual.cc:38: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c gtk-utils.cc -fPIC -DPIC -o .libs/gtk-utils.o -graphics-ligand-view.cc: In member function 'void graphics_ligand_bond::gl_bond_double_aromatic_bond(const lig_build::pos_t&, const lig_build::pos_t&, bool, bool)': -graphics-ligand-view.cc:278:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 278 | make_double_aromatic_short_stick(pos_1, pos_2, shorten_first, shorten_second); - | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from gtkglarea-rama-plot.cc:23: +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c HUDTextureMesh.cc -fPIC -DPIC -o .libs/HUDTextureMesh.o +In file included from gtk-widget-conversion-utils.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Instanced-Markup-Mesh.lo Instanced-Markup-Mesh.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Instanced-Markup-Mesh.cc -fPIC -DPIC -o .libs/Instanced-Markup-Mesh.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o init-from-gtkbuilder.lo init-from-gtkbuilder.cc In file included from command-arg.hh:33, from graphics-info.h:66, from graphics-ligand-mesh-molecule.cc:36: @@ -17424,11 +17480,7 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from gtk-widget-conversion-utils.cc:33: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c init-from-gtkbuilder.cc -fPIC -DPIC -o .libs/init-from-gtkbuilder.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -17450,16 +17502,20 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +In file included from Instanced-Markup-Mesh.cc:242: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +graphics-ligand-view.cc: In member function 'void graphics_ligand_bond::gl_bond_double_aromatic_bond(const lig_build::pos_t&, const lig_build::pos_t&, bool, bool)': +graphics-ligand-view.cc:278:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 278 | make_double_aromatic_short_stick(pos_1, pos_2, shorten_first, shorten_second); + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72: + from graphics-info.h:72, + from gtk-manual.cc:46: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -17477,39 +17533,17 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o HUDMesh.lo HUDMesh.cc -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c HUDMesh.cc -fPIC -DPIC -o .libs/HUDMesh.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o HUDTextureMesh.lo HUDTextureMesh.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c HUDTextureMesh.cc -fPIC -DPIC -o .libs/HUDTextureMesh.o -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Instanced-Markup-Mesh.lo Instanced-Markup-Mesh.cc +In file included from command-arg.hh:33, + from graphics-info.h:66, + from gtkglarea-rama-plot.cc:23: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72, - from gtk-manual.cc:46: + from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -17527,34 +17561,31 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Instanced-Markup-Mesh.cc -fPIC -DPIC -o .libs/Instanced-Markup-Mesh.o -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o key-bindings.lo key-bindings.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o LinesMesh.lo LinesMesh.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c key-bindings.cc -fPIC -DPIC -o .libs/key-bindings.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o LigandViewMesh.lo LigandViewMesh.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c LinesMesh.cc -fPIC -DPIC -o .libs/LinesMesh.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c LigandViewMesh.cc -fPIC -DPIC -o .libs/LigandViewMesh.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o init-from-gtkbuilder.lo init-from-gtkbuilder.cc -In file included from Instanced-Markup-Mesh.cc:242: +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from ../src/command-arg.hh:33, + from ../src/graphics-info.h:66, + from gtk-utils.cc:26: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -17572,37 +17603,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c init-from-gtkbuilder.cc -fPIC -DPIC -o .libs/init-from-gtkbuilder.o -gtkglarea-rama-plot.cc: In function 'void gtkgl_rama_on_glarea_render(GtkWidget*)': -gtkglarea-rama-plot.cc:94:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 94 | gtk_widget_get_allocation(GTK_WIDGET(gtk_gl_area), &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -gtkglarea-rama-plot.cc: In lambda function: -gtkglarea-rama-plot.cc:130:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 130 | gtk_widget_get_allocation(gl_area, &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -gtkglarea-rama-plot.cc: In static member function 'static void graphics_info_t::draw_rama_plots()': -gtkglarea-rama-plot.cc:354:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 354 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o key-bindings.lo key-bindings.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o LinesMesh.lo LinesMesh.cc -In file included from ../src/command-arg.hh:33, - from ../src/graphics-info.h:66, - from gtk-utils.cc:26: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from ../src/molecule-class-info.h:85, @@ -17624,30 +17624,24 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c key-bindings.cc -fPIC -DPIC -o .libs/key-bindings.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c LinesMesh.cc -fPIC -DPIC -o .libs/LinesMesh.o -In file included from ../src/molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-callbacks-outer.lo lbg-callbacks-outer.cc In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o LigandViewMesh.lo LigandViewMesh.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-callbacks-outer.cc -fPIC -DPIC -o .libs/lbg-callbacks-outer.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-interface.lo lbg-interface.cc graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-callbacks-outer.lo lbg-callbacks-outer.cc In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, @@ -17758,33 +17752,58 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c LigandViewMesh.cc -fPIC -DPIC -o .libs/LigandViewMesh.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o lbg-interface.lo lbg-interface.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-callbacks-outer.cc -fPIC -DPIC -o .libs/lbg-callbacks-outer.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c lbg-interface.cc -fPIC -DPIC -o .libs/lbg-interface.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Model.cc -fPIC -DPIC -o .libs/Model.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-a-dodec.lo make-a-dodec.cc -In file included from ../src/graphics-ligand-mesh-molecule.hh:30, - from ../src/graphics-info.h:151: +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o make-a-dodec.lo make-a-dodec.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Model.cc -fPIC -DPIC -o .libs/Model.o +In file included from ../src/molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o matrix-utils.lo matrix-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c make-a-dodec.cc -fPIC -DPIC -o .libs/make-a-dodec.o -../src/graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -../src/graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../src/gtk-utils.hh:26, - from gtk-utils.cc:24: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +gtkglarea-rama-plot.cc: In function 'void gtkgl_rama_on_glarea_render(GtkWidget*)': +gtkglarea-rama-plot.cc:94:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 94 | gtk_widget_get_allocation(GTK_WIDGET(gtk_gl_area), &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +gtkglarea-rama-plot.cc: In lambda function: +gtkglarea-rama-plot.cc:130:32: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 130 | gtk_widget_get_allocation(gl_area, &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +gtkglarea-rama-plot.cc: In static member function 'static void graphics_info_t::draw_rama_plots()': +gtkglarea-rama-plot.cc:354:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 354 | gtk_widget_get_allocation(GTK_WIDGET(gl_area), &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh.lo Mesh.cc In file included from command-arg.hh:33, from graphics-info.h:66, from init-from-gtkbuilder.cc:27: @@ -17792,6 +17811,7 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c matrix-utils.cc -fPIC -DPIC -o .libs/matrix-utils.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -17813,40 +17833,45 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o matrix-utils.lo matrix-utils.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 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../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo 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-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds-instanced.cc -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-glTF.cc -fPIC -DPIC -o .libs/Mesh-from-glTF.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-graphical-bonds-instanced.cc -fPIC -DPIC -o .libs/Mesh-from-graphical-bonds-instanced.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-graphical-bonds.lo Mesh-from-graphical-bonds.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-graphical-bonds.cc -fPIC -DPIC -o .libs/Mesh-from-graphical-bonds.o -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: +In file included from ../src/graphics-ligand-mesh-molecule.hh:30, + from ../src/graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] +../src/graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +../src/graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: + from ../src/gtk-utils.hh:26, + from gtk-utils.cc:24: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-glTF.lo Mesh-from-glTF.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds-instanced.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Mesh-from-graphical-bonds.lo Mesh-from-graphical-bonds.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-glTF.cc -fPIC -DPIC -o .libs/Mesh-from-glTF.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-graphical-bonds.cc -fPIC -DPIC -o .libs/Mesh-from-graphical-bonds.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Mesh-from-graphical-bonds-instanced.cc -fPIC -DPIC -o .libs/Mesh-from-graphical-bonds-instanced.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o meshed-generic-display-object.lo meshed-generic-display-object.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c meshed-generic-display-object.cc -fPIC -DPIC -o .libs/meshed-generic-display-object.o +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from Mesh-from-glTF.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -17873,9 +17898,19 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o meshed-generic-display-object.lo meshed-generic-display-object.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c meshed-generic-display-object.cc -fPIC -DPIC -o .libs/meshed-generic-display-object.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o model-molecule-meshes.lo model-molecule-meshes.cc +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecular-mesh-generator.hh:44, @@ -17896,9 +17931,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 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-I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info.lo molecule-class-info.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" 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-Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-alignment.lo molecule-class-info-alignment.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info.lo molecule-class-info.cc In file included from command-arg.hh:33, from graphics-info.h:66, from lbg-interface.cc:28: @@ -17906,8 +17941,6 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info.cc -fPIC -DPIC -o .libs/molecule-class-info.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-alignment.cc -fPIC -DPIC -o .libs/molecule-class-info-alignment.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -17929,15 +17962,19 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-analysis.lo molecule-class-info-analysis.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-analysis.cc -fPIC -DPIC -o .libs/molecule-class-info-analysis.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-alignment.lo molecule-class-info-alignment.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info.cc -fPIC -DPIC -o .libs/molecule-class-info.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-analysis.lo molecule-class-info-analysis.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-alignment.cc -fPIC -DPIC -o .libs/molecule-class-info-alignment.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-bonds.lo molecule-class-info-bonds.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-build.lo molecule-class-info-build.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-analysis.cc -fPIC -DPIC -o .libs/molecule-class-info-analysis.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-bonds.lo molecule-class-info-bonds.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-build.lo molecule-class-info-build.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-maps.lo molecule-class-info-maps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-bonds.cc -fPIC -DPIC -o .libs/molecule-class-info-bonds.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-build.cc -fPIC -DPIC -o .libs/molecule-class-info-build.o In file included from graphics-ligand-mesh-molecule.hh:30, @@ -17946,13 +17983,7 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from meshed-generic-display-object.cc:37: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-maps.cc -fPIC -DPIC -o .libs/molecule-class-info-maps.o graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -17966,10 +17997,18 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from meshed-generic-display-object.cc:37: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from molecule-class-info-alignment.cc:27: + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -17989,8 +18028,7 @@ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: + from molecule-class-info-analysis.cc:28: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -18010,7 +18048,7 @@ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from molecule-class-info-analysis.cc:28: + from molecule-class-info-alignment.cc:27: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -18027,7 +18065,13 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-maps.lo molecule-class-info-maps.cc +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from molecule-class-info.cc:77: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from model-molecule-meshes.cc:34: @@ -18056,57 +18100,15 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-maps-2.lo molecule-class-info-maps-2.cc -In file included from ../mini-mol/mini-mol.hh:29, - from molecule-class-info.h:104: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-maps.cc -fPIC -DPIC -o .libs/molecule-class-info-maps.o -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from molecule-class-info-bonds.cc:22: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-maps-2.cc -fPIC -DPIC -o .libs/molecule-class-info-maps-2.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from molecule-class-info.h:104: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from molecule-class-info.cc:77: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from molecule-class-info-build.cc:36: + from molecule-class-info-bonds.cc:22: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -18123,64 +18125,18 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from cc-interface.hh:39, - from lbg-interface.cc:39: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from molecule-class-info.h:104: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from molecule-class-info.h:104: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +In file included from cc-interface.hh:39, + from lbg-interface.cc:39: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -18206,6 +18162,12 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from ../mini-mol/mini-mol.hh:29, + from molecule-class-info.h:104: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -18230,7 +18192,7 @@ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from molecule-class-info-maps-2.cc:26: + from molecule-class-info-build.cc:36: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -18247,18 +18209,59 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +In file included from ../mini-mol/mini-mol.hh:29, + from molecule-class-info.h:104: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from ../mini-mol/mini-mol.hh:29, + from molecule-class-info.h:104: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-maps-2.lo molecule-class-info-maps-2.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-molecular-symmetry.lo molecule-class-info-molecular-symmetry.cc In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151, - from molecule-class-info-bonds.cc:24: + from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-kdc.lo molecule-class-info-kdc.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-molecular-symmetry.cc -fPIC -DPIC -o .libs/molecule-class-info-molecular-symmetry.o +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-maps-2.cc -fPIC -DPIC -o .libs/molecule-class-info-maps-2.o +In file included from ../mini-mol/mini-mol.hh:29, + from molecule-class-info.h:104: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-kdc.cc -fPIC -DPIC -o .libs/molecule-class-info-kdc.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -18279,6 +18282,11 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -18287,8 +18295,8 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from gtk-manual.h:26, - from molecule-class-info.h:102: + from gtk-manual.hh:29, + from molecule-class-info.cc:80: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ @@ -18297,25 +18305,24 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-molecular-symmetry.lo molecule-class-info-molecular-symmetry.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-kdc.lo molecule-class-info-kdc.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-dots.lo molecule-class-info-dots.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-molecular-symmetry.cc -fPIC -DPIC -o .libs/molecule-class-info-molecular-symmetry.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-kdc.cc -fPIC -DPIC -o .libs/molecule-class-info-kdc.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-dots.cc -fPIC -DPIC -o .libs/molecule-class-info-dots.o -In file included from ../mini-mol/mini-mol.hh:29, - from molecule-class-info.h:104: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151, + from molecule-class-info-bonds.cc:24: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-dots-internal.lo molecule-class-info-dots-internal.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -18324,21 +18331,11 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from gtk-manual.hh:29, - from molecule-class-info.cc:80: + from gtk-manual.h:26, + from molecule-class-info.h:102: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-dots-internal.cc -fPIC -DPIC -o .libs/molecule-class-info-dots-internal.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-other.lo molecule-class-info-other.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-mutate.lo molecule-class-info-mutate.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-mutate.cc -fPIC -DPIC -o .libs/molecule-class-info-mutate.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-other.cc -fPIC -DPIC -o .libs/molecule-class-info-other.o -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -18359,13 +18356,16 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-dots.lo molecule-class-info-dots.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-dots.cc -fPIC -DPIC -o .libs/molecule-class-info-dots.o In file included from ../coot-utils/coot-map-utils.hh:33, - from molecule-class-info-maps-2.cc:209: + from ../api/coot-molecule.hh:75, + from molecule-class-info.cc:120: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { @@ -18397,6 +18397,26 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from molecule-class-info-maps-2.cc:26: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -18416,29 +18436,65 @@ ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from ../api/coot-molecule.hh:75, - from molecule-class-info.cc:120: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-dots-internal.lo molecule-class-info-dots-internal.cc +In file included from ../mini-mol/mini-mol.hh:29, + from molecule-class-info.h:104: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-dots-internal.cc -fPIC -DPIC -o .libs/molecule-class-info-dots-internal.o +In file included from /usr/include/c++/14/bits/stl_algobase.h:64, + from /usr/include/c++/14/bits/specfun.h:43, + from /usr/include/c++/14/cmath:3906, + from /usr/include/c++/14/math.h:36, + from /usr/include/python3.13/Python.h:22, + from molecule-class-info.cc:25: +/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = glm::vec<3, float, glm::packed_highp>; _T2 = float&; typename __strip_reference_wrapper::type>::__type = glm::vec<3, float, glm::packed_highp>; typename decay<_Tp>::type = glm::vec<3, float, glm::packed_highp>; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': +molecule-class-info.cc:10781:54: required from here +10781 | positions[i] = std::make_pair(glm::vec3(p.x(), p.y(), p.z()), f); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair, float>' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1132 | make_pair(_T1&& __x, _T2&& __y) + | ^~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-other.lo molecule-class-info-other.cc In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-other.cc -fPIC -DPIC -o .libs/molecule-class-info-other.o In file included from ../mini-mol/mini-mol.hh:29, from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-residues.lo molecule-class-info-residues.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-refine.lo molecule-class-info-refine.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-refine.cc -fPIC -DPIC -o .libs/molecule-class-info-refine.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-residues.cc -fPIC -DPIC -o .libs/molecule-class-info-residues.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-mutate.lo molecule-class-info-mutate.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-mutate.cc -fPIC -DPIC -o .libs/molecule-class-info-mutate.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-residues.lo molecule-class-info-residues.cc +In file included from ../coot-utils/coot-map-utils.hh:33, + from molecule-class-info-maps-2.cc:209: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-dots.cc:28: @@ -18467,31 +18523,23 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-residues.cc -fPIC -DPIC -o .libs/molecule-class-info-residues.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-refine.lo molecule-class-info-refine.cc +In file included from /usr/include/clipper/core/hkl_datatypes.h:49, + from /usr/include/clipper/contrib/function_object_bases.h:50, + from /usr/include/clipper/contrib/skeleton.h:50, + from ../build/CalphaBuild.hh:28, + from molecule-class-info.h:105: +/usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': +/usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 + 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } + | ^~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-refine.cc -fPIC -DPIC -o .libs/molecule-class-info-refine.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from /usr/include/c++/14/bits/stl_algobase.h:64, - from /usr/include/c++/14/bits/specfun.h:43, - from /usr/include/c++/14/cmath:3906, - from /usr/include/c++/14/math.h:36, - from /usr/include/python3.13/Python.h:22, - from molecule-class-info.cc:25: -/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = glm::vec<3, float, glm::packed_highp>; _T2 = float&; typename __strip_reference_wrapper::type>::__type = glm::vec<3, float, glm::packed_highp>; typename decay<_Tp>::type = glm::vec<3, float, glm::packed_highp>; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': -molecule-class-info.cc:10781:54: required from here -10781 | positions[i] = std::make_pair(glm::vec3(p.x(), p.y(), p.z()), f); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair, float>' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1132 | make_pair(_T1&& __x, _T2&& __y) - | ^~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-kk.lo molecule-class-info-kk.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-kk.cc -fPIC -DPIC -o .libs/molecule-class-info-kk.o In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-other.cc:64: @@ -18499,6 +18547,33 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-kk.lo molecule-class-info-kk.cc +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-kk.cc -fPIC -DPIC -o .libs/molecule-class-info-kk.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-surface.lo molecule-class-info-surface.cc +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-string.lo molecule-class-info-string.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-surface.cc -fPIC -DPIC -o .libs/molecule-class-info-surface.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-patterson.lo molecule-class-info-patterson.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-string.cc -fPIC -DPIC -o .libs/molecule-class-info-string.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-patterson.cc -fPIC -DPIC -o .libs/molecule-class-info-patterson.o In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-mutate.cc:52: @@ -18506,6 +18581,40 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from ../coot-utils/coot-map-utils.hh:33, + from molecule-class-info-refine.cc:36: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from molecule-class-info-other.cc:67: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -18527,30 +18636,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-surface.lo molecule-class-info-surface.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-surface.cc -fPIC -DPIC -o .libs/molecule-class-info-surface.o -In file included from ../coot-utils/coot-map-utils.hh:33, - from molecule-class-info-refine.cc:36: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-residues.cc:45: @@ -18561,15 +18646,36 @@ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, + from molecule-class-info-refine.cc:40: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 43 | CXXCoord(const T *x){ | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' ../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 49 | CXXCoord(const T x,const T y, const T z) { @@ -18579,11 +18685,15 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from molecule-class-info-refine.cc:40: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: + from molecule-class-info-string.cc:32: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -18600,31 +18710,10 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from molecule-class-info-other.cc:67: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: + from molecule-class-info-kk.cc:25: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -18641,32 +18730,12 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-string.lo molecule-class-info-string.cc -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-patterson.lo molecule-class-info-patterson.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-string.cc -fPIC -DPIC -o .libs/molecule-class-info-string.o -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from molecule-class-info-surface.cc:36: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-ncs.lo molecule-class-info-ncs.cc -In file included from /usr/include/clipper/core/hkl_datatypes.h:49, - from /usr/include/clipper/contrib/function_object_bases.h:50, - from /usr/include/clipper/contrib/skeleton.h:50, - from ../build/CalphaBuild.hh:28, - from molecule-class-info.h:105: -/usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': -/usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 - 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } - | ^~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-ncs.lo molecule-class-info-ncs.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -18680,21 +18749,23 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from ../coot-utils/coot-map-utils.hh:33, - from molecule-class-info-mutate.cc:58: + from molecule-class-info-other.cc:84: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from molecule-class-info-surface.cc:36: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from molecule-class-info-kk.cc:25: + from molecule-class-info-patterson.cc:45: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -18711,13 +18782,29 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-patterson.cc -fPIC -DPIC -o .libs/molecule-class-info-patterson.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-ncs.cc -fPIC -DPIC -o .libs/molecule-class-info-ncs.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from ../mini-mol/mini-mol.hh:29, + from molecule-class-info.h:104: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': @@ -18730,6 +18817,12 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from ../mini-mol/mini-mol.hh:29, + from molecule-class-info.h:104: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -18743,31 +18836,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from molecule-class-info-string.cc:32: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -18781,6 +18849,13 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../coot-utils/coot-map-utils.hh:33, + from molecule-class-info-mutate.cc:58: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-mol-tris.lo molecule-class-info-mol-tris.cc In file included from command-arg.hh:33, from graphics-info.h:66, from molecule-class-info-surface.cc:39: @@ -18788,12 +18863,6 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from molecule-class-info-other.cc:84: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -18820,10 +18889,12 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -molecule-class-info-mutate.cc: In member function 'void molecule_class_info_t::spin_search(clipper::Xmap&, const std::string&, int, const std::string&, const std::pair, std::__cxx11::basic_string >&, const std::vector >&)': -molecule-class-info-mutate.cc:1349:47: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1349 | float angle = coot::util::spin_search(xmap, res, tors).first; - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-mol-tris.cc -fPIC -DPIC -o .libs/molecule-class-info-mol-tris.o +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from molecule-class-info-ncs.cc:45: @@ -18831,37 +18902,15 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from molecule-class-info.h:104: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from molecule-class-info-patterson.cc:45: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule&) const': +molecule-class-info-other.cc:3894:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 3894 | molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule &a_rotamer) const { + | ^~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -18883,80 +18932,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule&) const': -molecule-class-info-other.cc:3894:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 3894 | molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule &a_rotamer) const { - | ^~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-mol-tris.lo molecule-class-info-mol-tris.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-mol-tris.cc -fPIC -DPIC -o .libs/molecule-class-info-mol-tris.o -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from molecule-class-info.h:104: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from molecule-class-info.h:104: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from molecule-class-info-ncs.cc:49: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info-ncs.cc:51: -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from gtk-manual.h:26, - from molecule-class-info.h:102: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_phi_psi(int) const': -molecule-class-info-other.cc:3628:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 3628 | molecule_class_info_t::get_phi_psi(int atom_index) const { - | ^~~~~~~~~~~~~~~~~~~~~ -molecule-class-info-other.cc: In member function 'std::pair > molecule_class_info_t::get_clash_score(const coot::minimol::molecule&, bool, int) const': -molecule-class-info-other.cc:3805:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 3805 | std::pair rotamer_info = get_minimol_pos(a_rotamer); - | ^ In file included from /usr/include/clipper/core/hkl_datatypes.h:49, from /usr/include/clipper/contrib/function_object_bases.h:50, from /usr/include/clipper/contrib/skeleton.h:50, @@ -18976,18 +18951,17 @@ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::I_sigI' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ -molecule-class-info-ncs.cc: In member function 'std::pair molecule_class_info_t::chain_centre_and_radius(const std::string&) const': -molecule-class-info-ncs.cc:2623:77: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2623 | molecule_class_info_t::chain_centre_and_radius(const std::string &chain_id) const { - | ^~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-widget-work.lo molecule-class-info-widget-work.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 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-I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-geometry.lo molecule-class-info-geometry.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-widget-work.cc -fPIC -DPIC -o .libs/molecule-class-info-widget-work.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecular-mesh-generator.lo molecular-mesh-generator.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-geometry.cc -fPIC -DPIC -o .libs/molecule-class-info-geometry.o -In file included from command-arg.hh:33, - from graphics-info.h:66, - from molecule-class-info-mol-tris.cc:31: +molecule-class-info-mutate.cc: In member function 'void molecule_class_info_t::spin_search(clipper::Xmap&, const std::string&, int, const std::string&, const std::pair, std::__cxx11::basic_string >&, const std::vector >&)': +molecule-class-info-mutate.cc:1349:47: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1349 | float angle = coot::util::spin_search(xmap, res, tors).first; + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from ../mini-mol/mini-mol.hh:29, + from molecule-class-info.h:104: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -19000,6 +18974,40 @@ molecule-class-info-patterson.cc:196:31: note: parameter passing for argument of type 'clipper::datatypes::I_sigI' when C++17 is enabled changed to match C++14 in GCC 10.1 196 | if (!isig[ih.hkl()].missing()) { | ~~~~~~~~~~~~~^ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-widget-work.lo molecule-class-info-widget-work.cc +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-widget-work.cc -fPIC -DPIC -o .libs/molecule-class-info-widget-work.o +In file included from ../coot-utils/coot-map-utils.hh:33, + from molecule-class-info-ncs.cc:49: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecule-class-info-geometry.lo molecule-class-info-geometry.cc +In file included from command-arg.hh:33, + from graphics-info.h:66, + from molecule-class-info-mol-tris.cc:31: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -19021,21 +19029,39 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecule-class-info-geometry.cc -fPIC -DPIC -o .libs/molecule-class-info-geometry.o +In file included from molecule-class-info-ncs.cc:51: +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from gtk-manual.h:26, + from molecule-class-info.h:102: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +molecule-class-info-ncs.cc: In member function 'std::pair molecule_class_info_t::chain_centre_and_radius(const std::string&) const': +molecule-class-info-ncs.cc:2623:77: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2623 | molecule_class_info_t::chain_centre_and_radius(const std::string &chain_id) const { + | ^~~~~ +molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_phi_psi(int) const': +molecule-class-info-other.cc:3628:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 3628 | molecule_class_info_t::get_phi_psi(int atom_index) const { + | ^~~~~~~~~~~~~~~~~~~~~ +molecule-class-info-other.cc: In member function 'std::pair > molecule_class_info_t::get_clash_score(const coot::minimol::molecule&, bool, int) const': +molecule-class-info-other.cc:3805:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 3805 | std::pair rotamer_info = get_minimol_pos(a_rotamer); + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecular-mesh-generator.lo molecular-mesh-generator.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecular-mesh-generator.cc -fPIC -DPIC -o .libs/molecular-mesh-generator.o -In file included from molecular-mesh-generator.cc:43: -../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] - 63 | #pragma mark - -../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] - 64 | #pragma mark Debug routine -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecular-mesh-generator-mol-tris.lo molecular-mesh-generator-mol-tris.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecular-mesh-generator-mol-tris.cc -fPIC -DPIC -o .libs/molecular-mesh-generator-mol-tris.o -In file included from molecular-mesh-generator-mol-tris.cc:35: -../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] - 63 | #pragma mark - -../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] - 64 | #pragma mark Debug routine -In file included from ../MoleculesToTriangles/CXXClasses/Renderer.h:28, - from ../MoleculesToTriangles/CXXClasses/RendererGL.h:28: +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from molecule-class-info-widget-work.cc:27: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -19057,7 +19083,12 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o obj_loader.lo obj_loader.cc +In file included from molecular-mesh-generator.cc:43: +../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] + 63 | #pragma mark - +../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] + 64 | #pragma mark Debug routine +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o molecular-mesh-generator-mol-tris.lo molecular-mesh-generator-mol-tris.cc In file included from ../MoleculesToTriangles/CXXClasses/Renderer.h:28, from ../MoleculesToTriangles/CXXClasses/RendererGL.h:28: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -19076,26 +19107,13 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c obj_loader.cc -fPIC -DPIC -o .libs/obj_loader.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c molecular-mesh-generator-mol-tris.cc -fPIC -DPIC -o .libs/molecular-mesh-generator-mol-tris.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -19116,10 +19134,32 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from molecule-class-info-widget-work.cc:27: +In file included from molecular-mesh-generator-mol-tris.cc:35: +../MoleculesToTriangles/CXXClasses/RendererGL.h:63: warning: ignoring '#pragma mark ' [-Wunknown-pragmas] + 63 | #pragma mark - +../MoleculesToTriangles/CXXClasses/RendererGL.h:64: warning: ignoring '#pragma mark Debug' [-Wunknown-pragmas] + 64 | #pragma mark Debug routine +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from ../mini-mol/mini-mol.hh:29, + from molecule-class-info.h:104: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from ../MoleculesToTriangles/CXXClasses/Renderer.h:28, + from ../MoleculesToTriangles/CXXClasses/RendererGL.h:28: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { | ^ @@ -19136,6 +19176,50 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from ../mini-mol/mini-mol.hh:29, + from molecule-class-info.h:104: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o obj_loader.lo obj_loader.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c obj_loader.cc -fPIC -DPIC -o .libs/obj_loader.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pick.lo pick.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o positron-plot.lo positron-plot.cc +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151, + from molecule-class-info-widget-work.cc:530: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c positron-plot.cc -fPIC -DPIC -o .libs/positron-plot.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pick.cc -fPIC -DPIC -o .libs/pick.o +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from gtk-manual.h:26, + from molecule-class-info.h:102: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o probe-clash-score.lo probe-clash-score.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c probe-clash-score.cc -fPIC -DPIC -o .libs/probe-clash-score.o molecule-class-info-other.cc: In member function 'std::pair molecule_class_info_t::get_phi_psi(int) const': molecule-class-info-other.cc:3628:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3628 | molecule_class_info_t::get_phi_psi(int atom_index) const { @@ -19144,35 +19228,18 @@ molecule-class-info-other.cc:3894:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 3894 | molecule_class_info_t::get_minimol_pos(const coot::minimol::molecule &a_rotamer) const { | ^~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 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-DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pick.cc -fPIC -DPIC -o .libs/pick.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o positron-plot.lo positron-plot.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c positron-plot.cc -fPIC -DPIC -o .libs/positron-plot.o -In file included from ../mini-mol/mini-mol.hh:29, - from molecule-class-info.h:104: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from molecule-class-info.h:104: +In file included from probe-clash-score.cc:37: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o probe-clash-score.lo probe-clash-score.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c probe-clash-score.cc -fPIC -DPIC -o .libs/probe-clash-score.o -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from cc-interface.hh:37, from positron-plot.cc:33: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db-interface.lo protein_db-interface.cc In file included from ../lidia-core/lbg-molfile.hh:32, from ../coords/mmdb.hh:27, from pick.cc:38: @@ -19180,30 +19247,11 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from probe-clash-score.cc:37: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o protein_db-interface.lo protein_db-interface.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db-interface.cc -fPIC -DPIC -o .libs/protein_db-interface.o positron-plot.cc: In member function 'std::pair plot_data_t::canvas_coords_to_positron_coords(double, double) const': positron-plot.cc:169:65: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 169 | canvas_coords_to_positron_coords(double cx, double cy) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pumpkin.lo pumpkin.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c protein_db-interface.cc -fPIC -DPIC -o .libs/protein_db-interface.o -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151, - from molecule-class-info-widget-work.cc:530: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ In file included from ../mini-mol/mini-mol.hh:29, from ../mini-mol/mini-mol-utils.hh:22, from protein_db-interface.cc:27: @@ -19211,7 +19259,14 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o python-classes.lo python-classes.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o pumpkin.lo pumpkin.cc +positron-plot.cc: In member function 'void plot_data_t::fill_plot_data_from_positron_metadata(const std::string&, const std::string&)': +positron-plot.cc:259:81: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 259 | std::pair sane_min_max = get_sane_min_v_max_v(mdc.metadata); + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o python-classes.lo python-classes.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pumpkin.cc -fPIC -DPIC -o .libs/pumpkin.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c python-classes.cc -fPIC -DPIC -o .libs/python-classes.o In file included from command-arg.hh:33, from graphics-info.h:66, from pick.cc:43: @@ -19219,7 +19274,7 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c pumpkin.cc -fPIC -DPIC -o .libs/pumpkin.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Particle.lo Particle.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -19241,85 +19296,48 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from gtk-manual.h:26, - from molecule-class-info.h:102: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -positron-plot.cc: In member function 'void plot_data_t::fill_plot_data_from_positron_metadata(const std::string&, const std::string&)': -positron-plot.cc:259:81: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 259 | std::pair sane_min_max = get_sane_min_v_max_v(mdc.metadata); - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c python-classes.cc -fPIC -DPIC -o .libs/python-classes.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE 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-DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o read-phs.lo read-phs.c -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Particle.cc -fPIC -DPIC -o .libs/Particle.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-cif.lo read-cif.cc +/bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o read-phs.lo read-phs.c +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o read-cif.lo read-cif.cc libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c read-phs.c -fPIC -DPIC -o .libs/read-phs.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Particle.cc -fPIC -DPIC -o .libs/Particle.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 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-DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama_mousey.lo rama_mousey.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama_plot_with_canvas.lo rama_plot_with_canvas.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c read-cif.cc -fPIC -DPIC -o .libs/read-cif.o -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from Particle.cc:34: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 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-DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit 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restraints-editor.cc -fPIC -DPIC -o .libs/restraints-editor.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sdf-interface.lo sdf-interface.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" 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-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o screendump-tga.lo screendump-tga.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rsr-functions.cc -fPIC -DPIC -o .libs/rsr-functions.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sdf-interface.lo sdf-interface.cc +In file included from Particle.cc:34: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 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-Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c screendump-tga.cc -fPIC -DPIC -o .libs/screendump-tga.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sequence-view.lo sequence-view.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sdf-interface.cc -fPIC -DPIC -o .libs/sdf-interface.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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--mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 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-DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong 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-I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c seq-view-interface.c -fPIC -DPIC -o .libs/seq-view-interface.o +/bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o seq-view-interface.lo seq-view-interface.c +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sequence-view.cc -fPIC -DPIC -o .libs/sequence-view.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sound.lo sound.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Shader.lo Shader.cc +libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c seq-view-interface.c -fPIC -DPIC -o .libs/seq-view-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Shader.cc -fPIC -DPIC -o .libs/Shader.o -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from cc-interface.hh:39, - from pick.cc:54: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ +In file included from read-cif.cc:34: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o sound.lo sound.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o startup-utils.lo startup-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c sound.cc -fPIC -DPIC -o .libs/sound.o seq-view-interface.c: In function 'seq_lookup_widget': seq-view-interface.c:56:14: warning: unused variable 'parent' [-Wunused-variable] @@ -19373,35 +19391,60 @@ seq-view-interface.c:157:15: warning: unused variable 'window' [-Wunused-variable] 157 | GtkWidget *window = seq_lookup_widget(GTK_WIDGET(button), "sequence_view_dialog"); | ^~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid 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-I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c startup-utils.cc -fPIC -DPIC -o .libs/startup-utils.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c testing.cc -fPIC -DPIC -o .libs/testing.o +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:39, + from pick.cc:54: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from startup-utils.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o testing-2.lo testing-2.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Texture.lo Texture.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 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-DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c testing-2.cc -fPIC -DPIC -o .libs/testing-2.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Texture.cc -fPIC -DPIC -o .libs/Texture.o In file included from sound.cc:44: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c testing-2.cc -fPIC -DPIC -o .libs/testing-2.o In file included from restraints-editor.cc:40: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from Texture.cc:37: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from command-arg.hh:33, from graphics-info.h:66, - from screendump-tga.cc:36: + from text-rendering-utils.cc:51: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o Texture.lo Texture.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o TextureMesh.lo TextureMesh.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -19423,7 +19466,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o TextureMesh.lo TextureMesh.cc In file included from command-arg.hh:33, from graphics-info.h:66, from rsr-functions.cc:27: @@ -19431,6 +19473,7 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c TextureMesh.cc -fPIC -DPIC -o .libs/TextureMesh.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -19452,11 +19495,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c Texture.cc -fPIC -DPIC -o .libs/Texture.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c TextureMesh.cc -fPIC -DPIC -o .libs/TextureMesh.o In file included from command-arg.hh:33, from graphics-info.h:66, - from text-rendering-utils.cc:51: + from screendump-tga.cc:36: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -19504,11 +19545,32 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from Texture.cc:37: +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o tomo-tools.lo tomo-tools.cc +In file included from ../ideal/simple-restraint.hh:162, + from testing-2.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from ../coot-utils/coot-map-utils.hh:33, + from testing-2.cc:25: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from testing.hh:26, + from testing-2.cc:28: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c tomo-tools.cc -fPIC -DPIC -o .libs/tomo-tools.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -19531,31 +19593,6 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from ../ideal/simple-restraint.hh:162, - from testing-2.cc:24: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from testing-2.cc:25: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from testing.hh:26, - from testing-2.cc:28: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o tomo-tools.lo tomo-tools.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -19566,28 +19603,75 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from sdf-interface.cc:43: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c tomo-tools.cc -fPIC -DPIC -o .libs/tomo-tools.o In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from ../lidia-core/lbg-molfile.hh:32, + from ../coords/mmdb.hh:27, + from testing.hh:26, + from testing.cc:33: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from ../mini-mol/mini-mol.hh:29, + from ../coot-utils/coot-coord-extras.hh:33, + from testing.hh:29: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -19601,7 +19685,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o trackball.lo trackball.c In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': @@ -19614,60 +19697,23 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from sdf-interface.cc:43: +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from tomo-tools.cc:31: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c trackball.c -fPIC -DPIC -o .libs/trackball.o In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -trackball.c:262:17: warning: argument 1 of type 'float[4]' with mismatched bound [-Warray-parameter=] - 262 | add_quats(float q1[4], float q2[4], float dest[4]) - | ~~~~~~^~~~~ -In file included from trackball.c:54: -trackball.h:82:18: note: previously declared as 'float *' - 82 | add_quats(float *q1, float *q2, float *dest); - | ~~~~~~~^~ -trackball.c:262:30: warning: argument 2 of type 'float[4]' with mismatched bound [-Warray-parameter=] - 262 | add_quats(float q1[4], float q2[4], float dest[4]) - | ~~~~~~^~~~~ -trackball.h:82:29: note: previously declared as 'float *' - 82 | add_quats(float *q1, float *q2, float *dest); - | ~~~~~~~^~ -trackball.c:262:43: warning: argument 3 of type 'float[4]' with mismatched bound [-Warray-parameter=] - 262 | add_quats(float q1[4], float q2[4], float dest[4]) - | ~~~~~~^~~~~~~ -trackball.h:82:40: note: previously declared as 'float *' - 82 | add_quats(float *q1, float *q2, float *dest); - | ~~~~~~~^~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -19681,13 +19727,18 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o user-mods.lo user-mods.cc +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from text-rendering-utils.cc:35: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -19701,39 +19752,12 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from TextureMesh.cc:48: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from tomo-tools.cc:31: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -19742,10 +19766,22 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from text-rendering-utils.cc:35: + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from testing.cc:50: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from ../coot-utils/coot-map-utils.hh:33, + from testing.cc:60: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -19758,7 +19794,6 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c user-mods.cc -fPIC -DPIC -o .libs/user-mods.o restraints-editor.cc: In member function 'void coot::restraints_editor::fill_atom_tree_data(GtkWidget*, const coot::dictionary_residue_restraints_t&)': restraints-editor.cc:126:56: warning: 'GtkTreeStore* gtk_tree_store_new(int, ...)' is deprecated: Use 'GtkTreeListModel' instead [-Wdeprecated-declarations] 126 | GtkTreeStore *tree_store_atoms = gtk_tree_store_new (4, G_TYPE_STRING, G_TYPE_STRING, G_TYPE_STRING, @@ -20736,94 +20771,18 @@ /usr/include/gtk-4.0/gtk/deprecated/gtktreestore.h:131:15: note: declared here 131 | void gtk_tree_store_append (GtkTreeStore *tree_store, | ^~~~~~~~~~~~~~~~~~~~~ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from ../lidia-core/lbg-molfile.hh:32, - from ../coords/mmdb.hh:27, - from testing.hh:26, - from testing.cc:33: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from ../mini-mol/mini-mol.hh:29, - from ../coot-utils/coot-coord-extras.hh:33, - from testing.hh:29: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from user-mods.cc:37: +/bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c -o trackball.lo trackball.c +In file included from command-arg.hh:33, + from graphics-info.h:66, + from TextureMesh.cc:48: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o xmap-utils.lo xmap-utils.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-plot-phi-psi.lo rama-plot-phi-psi.cc -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from testing.cc:50: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from ../coot-utils/coot-map-utils.hh:33, - from testing.cc:60: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c xmap-utils.cc -fPIC -DPIC -o .libs/xmap-utils.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72, - from tomo-tools.cc:36: + from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -20841,8 +20800,28 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o spherical-density.lo spherical-density.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c spherical-density.cc -fPIC -DPIC -o .libs/spherical-density.o +libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -DHAVE_SYS_STDTYPES_H=0 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -D_REENTRANT -Wall -Wunused -c trackball.c -fPIC -DPIC -o .libs/trackball.o +trackball.c:262:17: warning: argument 1 of type 'float[4]' with mismatched bound [-Warray-parameter=] + 262 | add_quats(float q1[4], float q2[4], float dest[4]) + | ~~~~~~^~~~~ +In file included from trackball.c:54: +trackball.h:82:18: note: previously declared as 'float *' + 82 | add_quats(float *q1, float *q2, float *dest); + | ~~~~~~~^~ +trackball.c:262:30: warning: argument 2 of type 'float[4]' with mismatched bound [-Warray-parameter=] + 262 | add_quats(float q1[4], float q2[4], float dest[4]) + | ~~~~~~^~~~~ +trackball.h:82:29: note: previously declared as 'float *' + 82 | add_quats(float *q1, float *q2, float *dest); + | ~~~~~~~^~ +trackball.c:262:43: warning: argument 3 of type 'float[4]' with mismatched bound [-Warray-parameter=] + 262 | add_quats(float q1[4], float q2[4], float dest[4]) + | ~~~~~~^~~~~~~ +trackball.h:82:40: note: previously declared as 'float *' + 82 | add_quats(float *q1, float *q2, float *dest); + | ~~~~~~~^~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o user-mods.lo user-mods.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o xmap-utils.lo xmap-utils.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -20865,30 +20844,50 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' 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-DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 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-Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o rama-plot-phi-psi.lo rama-plot-phi-psi.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o spherical-density.lo spherical-density.cc In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o validation.lo validation.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o view.lo view.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation.cc -fPIC -DPIC -o .libs/validation.o -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c view.cc -fPIC -DPIC -o .libs/view.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o widget-from-builder.lo widget-from-builder.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c widget-from-builder.cc -fPIC -DPIC -o .libs/widget-from-builder.o +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72, + from tomo-tools.cc:36: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c rama-plot-phi-psi.cc -fPIC -DPIC -o .libs/rama-plot-phi-psi.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c spherical-density.cc -fPIC -DPIC -o .libs/spherical-density.o +In file included from user-mods.cc:37: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from single-map-properties-dialog.cc:30: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -20902,6 +20901,37 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o single-map-properties-dialog.lo single-map-properties-dialog.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c single-map-properties-dialog.cc -fPIC -DPIC -o .libs/single-map-properties-dialog.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o validation.lo validation.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o view.lo view.cc +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c validation.cc -fPIC -DPIC -o .libs/validation.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c view.cc -fPIC -DPIC -o .libs/view.o +In file included from /usr/include/c++/14/bits/stl_algobase.h:64, + from /usr/include/c++/14/bits/specfun.h:43, + from /usr/include/c++/14/cmath:3906, + from /usr/include/c++/14/math.h:36, + from /usr/include/python3.13/Python.h:22, + from sdf-interface.cc:23: +In constructor 'constexpr std::pair<_T1, _T2>::pair(_U1&&, _U2&&) [with _U1 = bool; _U2 = clipper::Coord_orth&; typename std::enable_if<(std::_PCC::_MoveConstructiblePair<_U1, _U2>() && std::_PCC::_ImplicitlyMoveConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = bool; _T2 = clipper::Coord_orth]', + inlined from 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)' at sdf-interface.cc:413:56: +/usr/include/c++/14/bits/stl_pair.h:882:42: warning: 'v' may be used uninitialized [-Wmaybe-uninitialized] + 882 | : first(std::forward<_U1>(__x)), second(std::forward<_U2>(__y)) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +sdf-interface.cc: In function 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)': +sdf-interface.cc:403:24: note: 'v' declared here + 403 | clipper::Coord_orth v; + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from single-map-properties-dialog.cc:30: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -20915,15 +20945,13 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from tomo-tools.cc:139: -../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': -../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 139 | std::pair median_and_iqr() const { - | ^ -/bin/bash ../src/post-process-coot-wrap-guile.sh coot_wrap_guile_pre.cc coot_wrap_guile.cc -adding gtk2 and guile ifdefs from coot_wrap_guile_pre.cc coot_wrap_guile.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_wrap_guile.lo coot_wrap_guile.cc -libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_wrap_guile.cc -fPIC -DPIC -o .libs/coot_wrap_guile.o +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o widget-from-builder.lo widget-from-builder.cc In file included from command-arg.hh:33, from graphics-info.h:66, from spherical-density.cc:30: @@ -20931,34 +20959,9 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from command-arg.hh:33, - from graphics-info.h:66, - from validation.cc:28: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, - from ../MoleculesToTriangles/CXXClasses/Light.h:29, - from molecule-class-info.h:85, - from graphics-info.h:72: -../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 39 | CXXCoord() { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 43 | CXXCoord(const T *x){ - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 49 | CXXCoord(const T x,const T y, const T z) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 52 | CXXCoord(const T x, const T y, const T z, const T r) { - | ^ -../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +/bin/sh ../src/post-process-coot-wrap-guile.sh coot_wrap_guile_pre.cc coot_wrap_guile.cc +adding gtk2 and guile ifdefs from coot_wrap_guile_pre.cc coot_wrap_guile.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_wrap_guile.lo coot_wrap_guile.cc In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -20980,6 +20983,26 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from tomo-tools.cc:139: +../analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': +../analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 139 | std::pair median_and_iqr() const { + | ^ +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c widget-from-builder.cc -fPIC -DPIC -o .libs/widget-from-builder.o +libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_wrap_guile.cc -fPIC -DPIC -o .libs/coot_wrap_guile.o In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -21002,19 +21025,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from command-arg.hh:33, from graphics-info.h:66, - from view.cc:27: + from validation.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -21040,24 +21053,13 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ In file included from command-arg.hh:33, from graphics-info.h:66, - from widget-from-builder.cc:28: + from view.cc:27: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -21079,54 +21081,11 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': -graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] - 1107 | gtk_widget_get_allocation(glareas[0], &allocation); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, - from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, - from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, - from /usr/include/gtk-4.0/gtk/gtk.h:33, - from ../validation-graphs/validation-graphs.hh:30, - from graphics-info.h:33: -/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here - 479 | void gtk_widget_get_allocation (GtkWidget *widget, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from cc-interface.hh:39, - from validation.cc:30: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from /usr/include/c++/14/bits/stl_algobase.h:64, - from /usr/include/c++/14/bits/specfun.h:43, - from /usr/include/c++/14/cmath:3906, - from /usr/include/c++/14/math.h:36, - from /usr/include/python3.13/Python.h:22, - from sdf-interface.cc:23: -In constructor 'constexpr std::pair<_T1, _T2>::pair(_U1&&, _U2&&) [with _U1 = bool; _U2 = clipper::Coord_orth&; typename std::enable_if<(std::_PCC::_MoveConstructiblePair<_U1, _U2>() && std::_PCC::_ImplicitlyMoveConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = bool; _T2 = clipper::Coord_orth]', - inlined from 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)' at sdf-interface.cc:413:56: -/usr/include/c++/14/bits/stl_pair.h:882:42: warning: 'v' may be used uninitialized [-Wmaybe-uninitialized] - 882 | : first(std::forward<_U1>(__x)), second(std::forward<_U2>(__y)) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -sdf-interface.cc: In function 'std::pair chemical_features::get_normal_info(RDKit::MolChemicalFeature*, const RDKit::ROMol&, const RDKit::Conformer&)': -sdf-interface.cc:403:24: note: 'v' declared here - 403 | clipper::Coord_orth v; - | ^ -testing.cc: In function 'int test_ligand_conformer_torsion_angles()': -testing.cc:1631:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1631 | std::pair p = conformer_info[i].get_set_and_real_torsions(itor); - | ^ -testing.cc: In function 'int test_lsq_plane()': -testing.cc:2629:65: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2629 | std::pair d = coot::lsq_plane_deviation(v, pt); - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from molecule-class-info.h:127: ../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -21138,6 +21097,14 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +testing.cc: In function 'int test_ligand_conformer_torsion_angles()': +testing.cc:1631:83: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1631 | std::pair p = conformer_info[i].get_set_and_real_torsions(itor); + | ^ +testing.cc: In function 'int test_lsq_plane()': +testing.cc:2629:65: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2629 | std::pair d = coot::lsq_plane_deviation(v, pt); + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -21151,17 +21118,28 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from cc-interface.hh:39, from spherical-density.cc:32: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -21203,6 +21181,12 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -21216,6 +21200,58 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': +graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] + 1107 | gtk_widget_get_allocation(glareas[0], &allocation); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtkapplication.h:26, + from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, + from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, + from /usr/include/gtk-4.0/gtk/gtk.h:33, + from ../validation-graphs/validation-graphs.hh:30, + from graphics-info.h:33: +/usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here + 479 | void gtk_widget_get_allocation (GtkWidget *widget, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from command-arg.hh:33, + from graphics-info.h:66, + from widget-from-builder.cc:28: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from cc-interface.hh:39, + from validation.cc:30: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, + from ../MoleculesToTriangles/CXXClasses/Light.h:29, + from molecule-class-info.h:85, + from graphics-info.h:72: +../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 39 | CXXCoord() { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 43 | CXXCoord(const T *x){ + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:43:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 49 | CXXCoord(const T x,const T y, const T z) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:49:16: note: remove the '< >' +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 52 | CXXCoord(const T x, const T y, const T z, const T r) { + | ^ +../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': @@ -21243,7 +21279,7 @@ testing.cc:2615:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2615 | int test_lsq_plane() { | ^~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootsumo.la -rpath /usr/lib/aarch64-linux-gnu init_coot_as_python_module.lo boids.lo boot-python.lo atom-overlaps.lo git-revision-count.lo scm-boot-guile.lo c-interface-analysis.lo c-interface-bonds.lo c-interface-build.lo c-interface-build-morph.lo c-interface-build-main-chain.lo c-interface-build-side-chain.lo c-interface-build-symmetry.lo c-interface-build-gui.lo c-interface-curlew.lo c-interface-database.lo c-interface-gui.lo c-interface-gtk2.lo c-interface-info.lo c-interface-kk.lo c-interface-image.lo c-interface-ligands-gui.lo c-interface-ligands.lo c-interface-maps.lo c-interface-mmdb.lo c-interface-mogul.lo c-interface-mogul-scripting.lo c-interface-mutate.lo c-interface-ncs.lo c-interface-network.lo c-interface-nucleotides.lo c-interface-pisa.lo c-interface-pisa-gui.lo c-interface-preferences.lo c-interface-python.lo c-interface-refine.lo c-interface-residues.lo c-interface-refmac.lo simple-refmac.lo c-interface-scm.lo c-interface-sequence.lo c-interface-sfs.lo c-interface-sharpen.lo c-interface-superpose.lo c-interface-validate.lo c-interface-view.lo c-interface-widgets.lo c-interface-waters.lo c-interface-waters-gui.lo c-interface.lo c-interface-test.lo cc-interface-alignment.lo cc-interface-graphics.lo cc-interface-merge.lo cc-interface-molecular-representation.lo cc-interface-molecular-symmetry.lo cc-interface-scripting.lo cc-interface-map-utils.lo cc-interface-png.lo cc-interface-user-defined-atom-colours.lo cfc.lo change-dir.lo cmtz-interface.lo command-line.lo command-line-extern.lo coot-application.lo coot-colour.lo coot-align.lo coot-nomenclature.lo coot-glue-gtk2.lo coot-glue-gtk2-python.lo coot-hydrogens.lo coot-phi-psi.lo coot_pythonmodule.lo coot-setup-python.lo coot_wrap_guile.lo curlew-gtk4.lo draw.lo graphics-info-tick-function.lo drag-and-drop.lo draw-generic-display-objects.lo dynamic-validation.lo eyes.lo event-controller-callbacks.lo fit-loop-gui.lo flev.lo framebuffer.lo old-generic-display-object.lo gaussian-surface.lo generic-objects.lo geometry-graphs.lo get-residue.lo get-monomer.lo gl-rama-plot.lo globjects.lo globularize.lo graphics-info.lo graphics-info-defines.lo graphics-info-defines-gtk4.lo graphics-info-draw.lo graphics-info-draw-models.lo graphics-info-graphs.lo graphics-info-gui.lo graphics-info-init.lo graphics-info-intermediate.lo graphics-info-modelling.lo graphics-info-navigation.lo graphics-info-navigation-gtk2.lo graphics-info-preferences.lo graphics-info-network.lo graphics-info-mutate.lo graphics-info-lsq.lo graphics-info-opengl.lo graphics-info-pick.lo graphics-info-refmac.lo graphics-info-render.lo graphics-info-render-scene.lo graphics-info-residues.lo graphics-info-refine.lo graphics-info-scripting.lo graphics-info-state.lo graphics-info-statics.lo graphics-info-superpose.lo graphics-info-trackball.lo graphics-ligand-view.lo graphics-ligand-mesh-molecule.lo gl-matrix.lo gtkglarea-rama-plot.lo gtk-manual.lo gtk-widget-conversion-utils.lo gtk-utils.lo HUDMesh.lo HUDTextureMesh.lo Instanced-Markup-Mesh.lo init-from-gtkbuilder.lo key-bindings.lo LinesMesh.lo LigandViewMesh.lo lbg-callbacks-outer.lo lbg-interface.lo Model.lo make-a-dodec.lo matrix-utils.lo Mesh.lo Mesh-from-glTF.lo Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds.lo meshed-generic-display-object.lo model-molecule-meshes.lo molecule-class-info.lo molecule-class-info-alignment.lo molecule-class-info-analysis.lo molecule-class-info-bonds.lo molecule-class-info-build.lo molecule-class-info-maps.lo molecule-class-info-maps-2.lo molecule-class-info-molecular-symmetry.lo molecule-class-info-kdc.lo molecule-class-info-dots.lo molecule-class-info-dots-internal.lo molecule-class-info-other.lo molecule-class-info-mutate.lo molecule-class-info-residues.lo molecule-class-info-refine.lo molecule-class-info-kk.lo molecule-class-info-surface.lo molecule-class-info-string.lo molecule-class-info-patterson.lo molecule-class-info-ncs.lo molecule-class-info-mol-tris.lo molecule-class-info-widget-work.lo molecule-class-info-geometry.lo molecular-mesh-generator.lo molecular-mesh-generator-mol-tris.lo obj_loader.lo pick.lo positron-plot.lo probe-clash-score.lo protein_db-interface.lo pumpkin.lo python-classes.lo Particle.lo read-phs.lo read-cif.lo rama_mousey.lo rama_plot_with_canvas.lo text-rendering-utils.lo restraints-editor.lo rsr-functions.lo screendump-tga.lo sdf-interface.lo sequence-view.lo seq-view-interface.lo Shader.lo sound.lo startup-utils.lo testing.lo testing-2.lo Texture.lo TextureMesh.lo tomo-tools.lo trackball.lo user-mods.lo xmap-utils.lo rama-plot-phi-psi.lo spherical-density.lo single-map-properties-dialog.lo validation.lo view.lo widget-from-builder.lo -fopenmp ../api/libcoot-api.la ../pli/libcoot-pli.la ../layla/libcoot-layla.la ../ligand/libcoot-res-tracer.la ../ligand/libcoot-ligand.la ../validation-graphs/libcoot-validation-graphs.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../compat/libcoot-compat.la -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lm -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lfreetype -lsqlite3 -lpthread +/bin/sh ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootsumo.la -rpath /usr/lib/aarch64-linux-gnu init_coot_as_python_module.lo boids.lo boot-python.lo atom-overlaps.lo git-revision-count.lo scm-boot-guile.lo c-interface-analysis.lo c-interface-bonds.lo c-interface-build.lo c-interface-build-morph.lo c-interface-build-main-chain.lo c-interface-build-side-chain.lo c-interface-build-symmetry.lo c-interface-build-gui.lo c-interface-curlew.lo c-interface-database.lo c-interface-gui.lo c-interface-gtk2.lo c-interface-info.lo c-interface-kk.lo c-interface-image.lo c-interface-ligands-gui.lo c-interface-ligands.lo c-interface-maps.lo c-interface-mmdb.lo c-interface-mogul.lo c-interface-mogul-scripting.lo c-interface-mutate.lo c-interface-ncs.lo c-interface-network.lo c-interface-nucleotides.lo c-interface-pisa.lo c-interface-pisa-gui.lo c-interface-preferences.lo c-interface-python.lo c-interface-refine.lo c-interface-residues.lo c-interface-refmac.lo simple-refmac.lo c-interface-scm.lo c-interface-sequence.lo c-interface-sfs.lo c-interface-sharpen.lo c-interface-superpose.lo c-interface-validate.lo c-interface-view.lo c-interface-widgets.lo c-interface-waters.lo c-interface-waters-gui.lo c-interface.lo c-interface-test.lo cc-interface-alignment.lo cc-interface-graphics.lo cc-interface-merge.lo cc-interface-molecular-representation.lo cc-interface-molecular-symmetry.lo cc-interface-scripting.lo cc-interface-map-utils.lo cc-interface-png.lo cc-interface-user-defined-atom-colours.lo cfc.lo change-dir.lo cmtz-interface.lo command-line.lo command-line-extern.lo coot-application.lo coot-colour.lo coot-align.lo coot-nomenclature.lo coot-glue-gtk2.lo coot-glue-gtk2-python.lo coot-hydrogens.lo coot-phi-psi.lo coot_pythonmodule.lo coot-setup-python.lo coot_wrap_guile.lo curlew-gtk4.lo draw.lo graphics-info-tick-function.lo drag-and-drop.lo draw-generic-display-objects.lo dynamic-validation.lo eyes.lo event-controller-callbacks.lo fit-loop-gui.lo flev.lo framebuffer.lo old-generic-display-object.lo gaussian-surface.lo generic-objects.lo geometry-graphs.lo get-residue.lo get-monomer.lo gl-rama-plot.lo globjects.lo globularize.lo graphics-info.lo graphics-info-defines.lo graphics-info-defines-gtk4.lo graphics-info-draw.lo graphics-info-draw-models.lo graphics-info-graphs.lo graphics-info-gui.lo graphics-info-init.lo graphics-info-intermediate.lo graphics-info-modelling.lo graphics-info-navigation.lo graphics-info-navigation-gtk2.lo graphics-info-preferences.lo graphics-info-network.lo graphics-info-mutate.lo graphics-info-lsq.lo graphics-info-opengl.lo graphics-info-pick.lo graphics-info-refmac.lo graphics-info-render.lo graphics-info-render-scene.lo graphics-info-residues.lo graphics-info-refine.lo graphics-info-scripting.lo graphics-info-state.lo graphics-info-statics.lo graphics-info-superpose.lo graphics-info-trackball.lo graphics-ligand-view.lo graphics-ligand-mesh-molecule.lo gl-matrix.lo gtkglarea-rama-plot.lo gtk-manual.lo gtk-widget-conversion-utils.lo gtk-utils.lo HUDMesh.lo HUDTextureMesh.lo Instanced-Markup-Mesh.lo init-from-gtkbuilder.lo key-bindings.lo LinesMesh.lo LigandViewMesh.lo lbg-callbacks-outer.lo lbg-interface.lo Model.lo make-a-dodec.lo matrix-utils.lo Mesh.lo Mesh-from-glTF.lo Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds.lo meshed-generic-display-object.lo model-molecule-meshes.lo molecule-class-info.lo molecule-class-info-alignment.lo molecule-class-info-analysis.lo molecule-class-info-bonds.lo molecule-class-info-build.lo molecule-class-info-maps.lo molecule-class-info-maps-2.lo molecule-class-info-molecular-symmetry.lo molecule-class-info-kdc.lo molecule-class-info-dots.lo molecule-class-info-dots-internal.lo molecule-class-info-other.lo molecule-class-info-mutate.lo molecule-class-info-residues.lo molecule-class-info-refine.lo molecule-class-info-kk.lo molecule-class-info-surface.lo molecule-class-info-string.lo molecule-class-info-patterson.lo molecule-class-info-ncs.lo molecule-class-info-mol-tris.lo molecule-class-info-widget-work.lo molecule-class-info-geometry.lo molecular-mesh-generator.lo molecular-mesh-generator-mol-tris.lo obj_loader.lo pick.lo positron-plot.lo probe-clash-score.lo protein_db-interface.lo pumpkin.lo python-classes.lo Particle.lo read-phs.lo read-cif.lo rama_mousey.lo rama_plot_with_canvas.lo text-rendering-utils.lo restraints-editor.lo rsr-functions.lo screendump-tga.lo sdf-interface.lo sequence-view.lo seq-view-interface.lo Shader.lo sound.lo startup-utils.lo testing.lo testing-2.lo Texture.lo TextureMesh.lo tomo-tools.lo trackball.lo user-mods.lo xmap-utils.lo rama-plot-phi-psi.lo spherical-density.lo single-map-properties-dialog.lo validation.lo view.lo widget-from-builder.lo -fopenmp ../api/libcoot-api.la ../pli/libcoot-pli.la ../layla/libcoot-layla.la ../ligand/libcoot-res-tracer.la ../ligand/libcoot-ligand.la ../validation-graphs/libcoot-validation-graphs.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../compat/libcoot-compat.la -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lm -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges 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.libs/validation.o .libs/view.o .libs/widget-from-builder.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/api/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/layla/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ligand/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/density-contour/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/build/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/skeleton/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/angles/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/db-main/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/high-res/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/ideal/.libs -Wl,-rpath 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-DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o create-menu-item-actions.o create-menu-item-actions.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o density-score-by-residue-src.o density-score-by-residue-src.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot.lo coot.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot.lo coot.cc swig -o coot_wrap_python_pre.cc -DUSE_MOLECULES_TO_TRIANGLES -DCOOT_USE_GTK2_INTERFACE -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/python3.13 -DUSE_PYTHON -DUSE_LIBCURL -I../src -I.. -shadow -python -c++ ../src/coot.i libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot.cc -fPIC -DPIC -o .libs/coot.o In file included from ../coot-utils/coot-map-utils.hh:33, @@ -21275,12 +21311,6 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -In file included from cc-interface.hh:37, - from glade-callbacks-shader-settings.cc:24: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from glade-callbacks-preferences.cc:49: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -21325,7 +21355,7 @@ 84 | int gtk_combo_box_get_active (GtkComboBox *combo_box); | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from cc-interface.hh:37, - from glade-callbacks.cc:50: + from glade-callbacks-shader-settings.cc:24: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -21335,15 +21365,21 @@ ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from cc-interface.hh:37, + from glade-callbacks.cc:50: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from glade-callbacks-main-window.cc:56: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-density-score-by-residue-bin density-score-by-residue-src.o libcootsumo.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../ligand/libcoot-ligand.la ../analysis/libcoot-analysis.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm +/bin/sh ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o coot-density-score-by-residue-bin density-score-by-residue-src.o libcootsumo.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../ligand/libcoot-ligand.la ../analysis/libcoot-analysis.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm In file included from command-arg.hh:33, from graphics-info.h:66, - from create-menu-item-actions.cc:31: + from setup-gui-components.cc:28: ../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': ../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -21369,11 +21405,17 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +In file included from command-arg.hh:33, + from graphics-info.h:66, + from create-menu-item-actions.cc:31: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72, - from glade-callbacks.cc:53: + from graphics-info.h:72: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -21391,18 +21433,11 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -In file included from command-arg.hh:33, - from graphics-info.h:66, - from setup-gui-components.cc:28: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, - from glade-callbacks-main-window.cc:57: + from main.cc:81: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -21423,7 +21458,8 @@ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, - from graphics-info.h:72: + from graphics-info.h:72, + from glade-callbacks.cc:53: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -21445,7 +21481,7 @@ from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, from graphics-info.h:72, - from main.cc:81: + from glade-callbacks-main-window.cc:57: ../MoleculesToTriangles/CXXSurface/CXXCoord.h: At global scope: ../MoleculesToTriangles/CXXSurface/CXXCoord.h:39:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 39 | CXXCoord() { @@ -21463,14 +21499,9 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' -/bin/bash ../src/post-process-coot-wrap-python.sh gtk2 coot_wrap_python_pre.cc coot_wrap_python.cc -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_wrap_python.lo coot_wrap_python.cc +/bin/sh ../src/post-process-coot-wrap-python.sh gtk2 coot_wrap_python_pre.cc coot_wrap_python.cc +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c -o coot_wrap_python.lo coot_wrap_python.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.13\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DUSE_PYTHON -I/usr/include/gtk-4.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/aarch64-linux-gnu -I/usr/include/webp -I/usr/include/graphene-1.0 -I/usr/lib/aarch64-linux-gnu/graphene-1.0/include -pthread -I.. -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_MOLECULES_TO_TRIANGLES -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -DWITH_SOUND -DUSE_SQLITE3 -I/usr/lib/aarch64-linux-gnu/include -DUSE_GEMMI=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -c coot_wrap_python.cc -fPIC -DPIC -o .libs/coot_wrap_python.o -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from command-arg.hh:33, from graphics-info.h:66, from new-startup.cc:37: @@ -21483,21 +21514,6 @@ ../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from ../MoleculesToTriangles/CXXClasses/RotatedTranslatedScaledEntity.h:28, from ../MoleculesToTriangles/CXXClasses/Light.h:29, from molecule-class-info.h:85, @@ -21519,6 +21535,27 @@ 52 | CXXCoord(const T x, const T y, const T z, const T r) { | ^ ../MoleculesToTriangles/CXXSurface/CXXCoord.h:52:16: note: remove the '< >' +libtool: link: g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-density-score-by-residue-bin density-score-by-residue-src.o ./.libs/libcootsumo.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-extras.so ../coords/.libs/libcoot-coords.so ../mini-mol/.libs/libcoot-mini-mol.so ../ligand/.libs/libcoot-ligand.so ../analysis/.libs/libcoot-analysis.so ../db-main/.libs/libcoot-db-main.so ../ideal/.libs/libcoot-ideal.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so ../cootaneer/.libs/libcootaneer.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from graphics-ligand-mesh-molecule.hh:30, from graphics-info.h:151: ../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': @@ -21537,6 +21574,11 @@ ../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from molecule-class-info.h:127: +../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -21545,27 +21587,124 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from create-menu-item-actions.cc:28: + from setup-gui-components.cc:27: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from molecule-class-info.h:127: -../ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -../ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +setup-gui-components.cc: In function 'void setup_validation_graph_dialog()': +setup-gui-components.cc:162:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] + 162 | gtk_combo_box_set_model(GTK_COMBO_BOX(model_combobox),GTK_TREE_MODEL(graphics_info_t::validation_graph_model_list)); + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: +/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here + 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, + | ^~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc:163:31: warning: 'void gtk_combo_box_set_id_column(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] + 163 | gtk_combo_box_set_id_column(GTK_COMBO_BOX(model_combobox),0); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:142:15: note: declared here + 142 | void gtk_combo_box_set_id_column (GtkComboBox *combo_box, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc: In function 'void setup_ramachandran_plot_chooser_dialog()': +setup-gui-components.cc:170:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] + 170 | gtk_combo_box_set_model(GTK_COMBO_BOX(model_combobox), GTK_TREE_MODEL(graphics_info_t::ramachandran_plot_model_list)); + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here + 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, + | ^~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc:171:31: warning: 'void gtk_combo_box_set_id_column(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] + 171 | gtk_combo_box_set_id_column(GTK_COMBO_BOX(model_combobox),0); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:142:15: note: declared here + 142 | void gtk_combo_box_set_id_column (GtkComboBox *combo_box, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc: In function 'void attach_css_style_class_to_overlays()': +setup-gui-components.cc:188:36: warning: 'void gtk_css_provider_load_from_data(GtkCssProvider*, const char*, gssize)' is deprecated: Use 'gtk_css_provider_load_from_string' instead [-Wdeprecated-declarations] + 188 | gtk_css_provider_load_from_data (provider, ".mainWindowOverlayChild { background: rgba(0,0,0,0.7); }", -1); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtk.h:99: +/usr/include/gtk-4.0/gtk/gtkcssprovider.h:49:18: note: declared here + 49 | void gtk_css_provider_load_from_data (GtkCssProvider *css_provider, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc: In lambda function: +setup-gui-components.cc:191:62: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] + 191 | GtkStyleContext *context = gtk_widget_get_style_context(widget); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here + 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc:192:38: warning: 'void gtk_style_context_add_provider(GtkStyleContext*, GtkStyleProvider*, guint)' is deprecated [-Wdeprecated-declarations] + 192 | gtk_style_context_add_provider (context, GTK_STYLE_PROVIDER (provider), GTK_STYLE_PROVIDER_PRIORITY_APPLICATION); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtk.h:267: +/usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:64:6: note: declared here + 64 | void gtk_style_context_add_provider (GtkStyleContext *context, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc:193:35: warning: 'void gtk_style_context_add_class(GtkStyleContext*, const char*)' is deprecated [-Wdeprecated-declarations] + 193 | gtk_style_context_add_class (context, "mainWindowOverlayChild"); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:90:10: note: declared here + 90 | void gtk_style_context_add_class (GtkStyleContext *context, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc: In function 'void add_python_scripting_entry_completion(GtkWidget*)': +setup-gui-components.cc:215:61: warning: 'GtkEntryCompletion* gtk_entry_completion_new()' is deprecated [-Wdeprecated-declarations] + 215 | GtkEntryCompletion *completion = gtk_entry_completion_new(); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/gtk-4.0/gtk/gtkentry.h:39, + from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, + from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26: +/usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:66:21: note: declared here + 66 | GtkEntryCompletion *gtk_entry_completion_new (void); + | ^~~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc:216:45: warning: 'void gtk_entry_completion_set_popup_completion(GtkEntryCompletion*, gboolean)' is deprecated [-Wdeprecated-declarations] + 216 | gtk_entry_completion_set_popup_completion(completion, TRUE); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:108:21: note: declared here + 108 | void gtk_entry_completion_set_popup_completion (GtkEntryCompletion *completion, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc:217:40: warning: 'void gtk_entry_completion_set_text_column(GtkEntryCompletion*, int)' is deprecated [-Wdeprecated-declarations] + 217 | gtk_entry_completion_set_text_column(completion, 0); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:127:21: note: declared here + 127 | void gtk_entry_completion_set_text_column (GtkEntryCompletion *completion, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc:218:47: warning: 'void gtk_entry_completion_set_minimum_key_length(GtkEntryCompletion*, int)' is deprecated [-Wdeprecated-declarations] + 218 | gtk_entry_completion_set_minimum_key_length(completion, 2); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:85:21: note: declared here + 85 | void gtk_entry_completion_set_minimum_key_length (GtkEntryCompletion *completion, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc:219:28: warning: 'void gtk_entry_set_completion(GtkEntry*, GtkEntryCompletion*)' is deprecated [-Wdeprecated-declarations] + 219 | gtk_entry_set_completion(GTK_ENTRY(entry), completion); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/gtkentry.h:160:21: note: declared here + 160 | void gtk_entry_set_completion (GtkEntry *entry, + | ^~~~~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc:286:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] + 286 | GtkListStore *store = gtk_list_store_new(1, G_TYPE_STRING); + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26: +/usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here + 63 | GtkListStore *gtk_list_store_new (int n_columns, + | ^~~~~~~~~~~~~~~~~~ +setup-gui-components.cc:290:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] + 290 | gtk_list_store_append( store, &iter ); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here + 125 | void gtk_list_store_append (GtkListStore *list_store, + | ^~~~~~~~~~~~~~~~~~~~~ +setup-gui-components.cc:293:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] + 293 | gtk_list_store_set( store, &iter, 0, c.c_str(), -1 ); + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here + 81 | void gtk_list_store_set (GtkListStore *list_store, + | ^~~~~~~~~~~~~~~~~~ +setup-gui-components.cc:296:34: warning: 'void gtk_entry_completion_set_model(GtkEntryCompletion*, GtkTreeModel*)' is deprecated [-Wdeprecated-declarations] + 296 | gtk_entry_completion_set_model(completion, GTK_TREE_MODEL(store)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:74:21: note: declared here + 74 | void gtk_entry_completion_set_model (GtkEntryCompletion *completion, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -21574,7 +21713,7 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from glade-callbacks.cc:28: + from create-menu-item-actions.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ @@ -21590,42 +21729,30 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +In file included from cc-interface.hh:39, + from main.cc:96: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ In file included from cc-interface.hh:39, from create-menu-item-actions.cc:38: ../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': ../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -glade-callbacks.cc: In function 'void on_save_coords_filechooser_dialog_response(GtkDialog*, int)': -glade-callbacks.cc:868:48: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] - 868 | GFile *file = gtk_file_chooser_get_file(chooser); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here - 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -glade-callbacks.cc: In function 'void on_save_coords_dialog_save_button_clicked(GtkButton*, gpointer)': -glade-callbacks.cc:915:67: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] - 915 | GtkWidget *file_chooser_dialog = gtk_file_chooser_dialog_new("Save Coordinates", - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ - 916 | parent_window, - | ~~~~~~~~~~~~~~ - 917 | action, - | ~~~~~~~ - 918 | ("_Cancel"), - | ~~~~~~~~~~~~ - 919 | GTK_RESPONSE_CANCEL, - | ~~~~~~~~~~~~~~~~~~~~ - 920 | ("_Save"), - | ~~~~~~~~~~ - 921 | GTK_RESPONSE_YES, - | ~~~~~~~~~~~~~~~~~ - 922 | NULL); - | ~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtk.h:131: -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here - 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -21634,16 +21761,10 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from glade-callbacks-main-window.cc:28: + from glade-callbacks.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from cc-interface.hh:39, - from main.cc:96: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ create-menu-item-actions.cc: In function 'void on_coords_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:58:50: warning: 'const char* gtk_file_chooser_get_choice(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] 58 | const char *r = gtk_file_chooser_get_choice(GTK_FILE_CHOOSER(dialog), "recentering"); @@ -21731,13 +21852,6 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -glade-callbacks.cc: In function 'void on_phs_coordinates_filechooserdialog1_response(GtkDialog*, gint, gpointer)': -glade-callbacks.cc:5193:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] - 5193 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(phs_filechooser)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here - 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); - | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void auto_open_mtz_action(GSimpleAction*, GVariant*, gpointer)': create-menu-item-actions.cc:234:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] 234 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Open File", parent_window, action, @@ -21781,16 +21895,9 @@ | ~~~~~~~~~~~~~~~~~~~~ 276 | NULL); | ~~~~~ -glade-callbacks.cc: In function 'void on_screendump_filechooser_dialog_response(GtkDialog*, gint, gpointer)': -glade-callbacks.cc:5301:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] - 5301 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(file_chooser)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here - 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); - | ^~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc:280:31: warning: 'void gtk_file_chooser_add_choice(GtkFileChooser*, const char*, const char*, const char**, const char**)' is deprecated [-Wdeprecated-declarations] 280 | gtk_file_chooser_add_choice(GTK_FILE_CHOOSER(dialog), "is-diff-map", "Is Difference Map", NULL, NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -21803,14 +21910,6 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -glade-callbacks.cc: In function 'void on_residue_editor_select_monomer_type_ok_button_clicked(GtkButton*, gpointer)': -glade-callbacks.cc:5473:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] - 5473 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combo_box)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: -/usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here - 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ create-menu-item-actions.cc: In function 'void on_cif_dictionary_filechooser_dialog_response_gtk4(GtkDialog*, int)': create-menu-item-actions.cc:349:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 349 | GFile *file = gtk_file_chooser_get_file(chooser); @@ -21849,6 +21948,183 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +create-menu-item-actions.cc: In function 'void on_save_state_dialog_response(GtkDialog*, int)': +create-menu-item-actions.cc:579:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] + 579 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here + 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +create-menu-item-actions.cc: In function 'void save_state_action(GSimpleAction*, GVariant*, gpointer)': +create-menu-item-actions.cc:600:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] + 600 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Save State", + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ + 601 | parent_window, + | ~~~~~~~~~~~~~~ + 602 | action, + | ~~~~~~~ + 603 | ("Cancel"), + | ~~~~~~~~~~~ + 604 | GTK_RESPONSE_CANCEL, + | ~~~~~~~~~~~~~~~~~~~~ + 605 | ("Save"), + | ~~~~~~~~~ + 606 | GTK_RESPONSE_ACCEPT, + | ~~~~~~~~~~~~~~~~~~~~ + 607 | NULL); + | ~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here + 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +create-menu-item-actions.cc:611:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] + 611 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here + 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +create-menu-item-actions.cc: In function 'void on_save_views_dialog_response(GtkDialog*, int)': +create-menu-item-actions.cc:623:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] + 623 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here + 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +create-menu-item-actions.cc: In function 'void on_save_views_clicked(GtkButton*, gpointer)': +create-menu-item-actions.cc:636:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] + 636 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Save Views", + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ + 637 | parent_window, + | ~~~~~~~~~~~~~~ + 638 | action, + | ~~~~~~~ + 639 | ("Cancel"), + | ~~~~~~~~~~~ + 640 | GTK_RESPONSE_CANCEL, + | ~~~~~~~~~~~~~~~~~~~~ + 641 | ("Save"), + | ~~~~~~~~~ + 642 | GTK_RESPONSE_ACCEPT, + | ~~~~~~~~~~~~~~~~~~~~ + 643 | NULL); + | ~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here + 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +glade-callbacks.cc: In function 'void on_save_coords_filechooser_dialog_response(GtkDialog*, int)': +glade-callbacks.cc:868:48: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] + 868 | GFile *file = gtk_file_chooser_get_file(chooser); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +create-menu-item-actions.cc:647:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] + 647 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here + 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtk.h:130: +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here + 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +glade-callbacks.cc: In function 'void on_save_coords_dialog_save_button_clicked(GtkButton*, gpointer)': +glade-callbacks.cc:915:67: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] + 915 | GtkWidget *file_chooser_dialog = gtk_file_chooser_dialog_new("Save Coordinates", + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ + 916 | parent_window, + | ~~~~~~~~~~~~~~ + 917 | action, + | ~~~~~~~ + 918 | ("_Cancel"), + | ~~~~~~~~~~~~ + 919 | GTK_RESPONSE_CANCEL, + | ~~~~~~~~~~~~~~~~~~~~ + 920 | ("_Save"), + | ~~~~~~~~~~ + 921 | GTK_RESPONSE_YES, + | ~~~~~~~~~~~~~~~~~ + 922 | NULL); + | ~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtk.h:131: +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here + 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +create-menu-item-actions.cc: In function 'void on_run_script_filechooser_dialog_response_gtk4(GtkDialog*, int)': +create-menu-item-actions.cc:1108:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] + 1108 | GFile *file = gtk_file_chooser_get_file(chooser); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here + 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +create-menu-item-actions.cc: In function 'void run_script_action(GSimpleAction*, GVariant*, gpointer)': +create-menu-item-actions.cc:1131:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] + 1131 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Run Script File", + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ + 1132 | parent_window, + | ~~~~~~~~~~~~~~ + 1133 | action, + | ~~~~~~~ + 1134 | ("_Cancel"), + | ~~~~~~~~~~~~ + 1135 | GTK_RESPONSE_CANCEL, + | ~~~~~~~~~~~~~~~~~~~~ + 1136 | ("_Open"), + | ~~~~~~~~~~ + 1137 | GTK_RESPONSE_ACCEPT, + | ~~~~~~~~~~~~~~~~~~~~ + 1138 | NULL); + | ~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here + 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from probe-clash-score.hh:32, + from c-interface-ligands-swig.hh:35, + from coot_wrap_python.cc:3466: +../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +create-menu-item-actions.cc: In function 'void screenshot_action(GSimpleAction*, GVariant*, gpointer)': +create-menu-item-actions.cc:2240:38: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] + 2240 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(file_chooser), "coot-screendump.tga"); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here + 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +create-menu-item-actions.cc: In function 'void show_validation_graphs_dialog(GSimpleAction*, GVariant*, gpointer)': +create-menu-item-actions.cc:2393:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] + 2393 | gtk_combo_box_set_active(GTK_COMBO_BOX(model_combobox), imol); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: +/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here + 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, + | ^~~~~~~~~~~~~~~~~~~~~~~~ +create-menu-item-actions.cc: In function 'void ramachandran_plot_action(GSimpleAction*, GVariant*, gpointer)': +create-menu-item-actions.cc:2408:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] + 2408 | gtk_combo_box_set_active(GTK_COMBO_BOX(model_combobox), imol_idx); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here + 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, + | ^~~~~~~~~~~~~~~~~~~~~~~~ +glade-callbacks.cc: In function 'void on_phs_coordinates_filechooserdialog1_response(GtkDialog*, gint, gpointer)': +glade-callbacks.cc:5193:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] + 5193 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(phs_filechooser)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here + 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +glade-callbacks.cc: In function 'void on_screendump_filechooser_dialog_response(GtkDialog*, gint, gpointer)': +glade-callbacks.cc:5301:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] + 5301 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(file_chooser)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here + 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +glade-callbacks.cc: In function 'void on_residue_editor_select_monomer_type_ok_button_clicked(GtkButton*, gpointer)': +glade-callbacks.cc:5473:54: warning: 'char* gtk_combo_box_text_get_active_text(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] + 5473 | const char *t = gtk_combo_box_text_get_active_text(GTK_COMBO_BOX_TEXT(combo_box)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/gtk-4.0/gtk/gtk.h:95: +/usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:57:15: note: declared here + 57 | char *gtk_combo_box_text_get_active_text (GtkComboBoxText *combo_box); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_export_map_file_chooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6044:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6044 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); @@ -21924,13 +22200,6 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ -create-menu-item-actions.cc: In function 'void on_save_state_dialog_response(GtkDialog*, int)': -create-menu-item-actions.cc:579:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] - 579 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here - 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); - | ^~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6514:42: warning: 'void gtk_combo_box_text_remove_all(GtkComboBoxText*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6514 | gtk_combo_box_text_remove_all(GTK_COMBO_BOX_TEXT(file_combobox)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -21940,76 +22209,15 @@ glade-callbacks.cc:6515:43: warning: 'void gtk_combo_box_text_append_text(GtkComboBoxText*, const char*)' is deprecated: Use 'GtkDropDown and GtkStringList' instead [-Wdeprecated-declarations] 6515 | gtk_combo_box_text_append_text(GTK_COMBO_BOX_TEXT(file_combobox), file_name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -create-menu-item-actions.cc: In function 'void save_state_action(GSimpleAction*, GVariant*, gpointer)': -create-menu-item-actions.cc:600:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] - 600 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Save State", - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ - 601 | parent_window, - | ~~~~~~~~~~~~~~ - 602 | action, - | ~~~~~~~ - 603 | ("Cancel"), - | ~~~~~~~~~~~ - 604 | GTK_RESPONSE_CANCEL, - | ~~~~~~~~~~~~~~~~~~~~ - 605 | ("Save"), - | ~~~~~~~~~ - 606 | GTK_RESPONSE_ACCEPT, - | ~~~~~~~~~~~~~~~~~~~~ - 607 | NULL); - | ~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcomboboxtext.h:42:15: note: declared here 42 | void gtk_combo_box_text_append_text (GtkComboBoxText *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here - 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc:6516:37: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] 6516 | gtk_combo_box_set_active(GTK_COMBO_BOX(file_combobox), 0); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, | ^~~~~~~~~~~~~~~~~~~~~~~~ -create-menu-item-actions.cc:611:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] - 611 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here - 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -create-menu-item-actions.cc: In function 'void on_save_views_dialog_response(GtkDialog*, int)': -create-menu-item-actions.cc:623:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] - 623 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here - 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -create-menu-item-actions.cc: In function 'void on_save_views_clicked(GtkButton*, gpointer)': -create-menu-item-actions.cc:636:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] - 636 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Save Views", - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ - 637 | parent_window, - | ~~~~~~~~~~~~~~ - 638 | action, - | ~~~~~~~ - 639 | ("Cancel"), - | ~~~~~~~~~~~ - 640 | GTK_RESPONSE_CANCEL, - | ~~~~~~~~~~~~~~~~~~~~ - 641 | ("Save"), - | ~~~~~~~~~ - 642 | GTK_RESPONSE_ACCEPT, - | ~~~~~~~~~~~~~~~~~~~~ - 643 | NULL); - | ~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here - 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -create-menu-item-actions.cc:647:31: warning: 'void gtk_file_chooser_set_filter(GtkFileChooser*, GtkFileFilter*)' is deprecated [-Wdeprecated-declarations] - 647 | gtk_file_chooser_set_filter(GTK_FILE_CHOOSER(dialog), filterselect); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:147:22: note: declared here - 147 | void gtk_file_chooser_set_filter (GtkFileChooser *chooser, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ glade-callbacks.cc: In function 'void on_cif_dictionary_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks.cc:6585:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 6585 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); @@ -22064,62 +22272,12 @@ /usr/include/gtk-4.0/gtk/deprecated/gtktreemodel.h:369:19: note: declared here 369 | void gtk_tree_model_get (GtkTreeModel *tree_model, | ^~~~~~~~~~~~~~~~~~ -create-menu-item-actions.cc: In function 'void on_run_script_filechooser_dialog_response_gtk4(GtkDialog*, int)': -create-menu-item-actions.cc:1108:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] - 1108 | GFile *file = gtk_file_chooser_get_file(chooser); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here - 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -create-menu-item-actions.cc: In function 'void run_script_action(GSimpleAction*, GVariant*, gpointer)': -create-menu-item-actions.cc:1131:51: warning: 'GtkWidget* gtk_file_chooser_dialog_new(const char*, GtkWindow*, GtkFileChooserAction, const char*, ...)' is deprecated [-Wdeprecated-declarations] - 1131 | GtkWidget *dialog = gtk_file_chooser_dialog_new("Run Script File", - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ - 1132 | parent_window, - | ~~~~~~~~~~~~~~ - 1133 | action, - | ~~~~~~~ - 1134 | ("_Cancel"), - | ~~~~~~~~~~~~ - 1135 | GTK_RESPONSE_CANCEL, - | ~~~~~~~~~~~~~~~~~~~~ - 1136 | ("_Open"), - | ~~~~~~~~~~ - 1137 | GTK_RESPONSE_ACCEPT, - | ~~~~~~~~~~~~~~~~~~~~ - 1138 | NULL); - | ~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooserdialog.h:39:12: note: declared here - 39 | GtkWidget *gtk_file_chooser_dialog_new (const char *title, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from cc-interface.hh:39, - from glade-callbacks-main-window.cc:59: -../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -create-menu-item-actions.cc: In function 'void screenshot_action(GSimpleAction*, GVariant*, gpointer)': -create-menu-item-actions.cc:2240:38: warning: 'void gtk_file_chooser_set_current_name(GtkFileChooser*, const char*)' is deprecated [-Wdeprecated-declarations] - 2240 | gtk_file_chooser_set_current_name(GTK_FILE_CHOOSER(file_chooser), "coot-screendump.tga"); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:111:22: note: declared here - 111 | void gtk_file_chooser_set_current_name (GtkFileChooser *chooser, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -create-menu-item-actions.cc: In function 'void show_validation_graphs_dialog(GSimpleAction*, GVariant*, gpointer)': -create-menu-item-actions.cc:2393:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] - 2393 | gtk_combo_box_set_active(GTK_COMBO_BOX(model_combobox), imol); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: -/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here - 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, - | ^~~~~~~~~~~~~~~~~~~~~~~~ -create-menu-item-actions.cc: In function 'void ramachandran_plot_action(GSimpleAction*, GVariant*, gpointer)': -create-menu-item-actions.cc:2408:28: warning: 'void gtk_combo_box_set_active(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] - 2408 | gtk_combo_box_set_active(GTK_COMBO_BOX(model_combobox), imol_idx); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:86:15: note: declared here - 86 | void gtk_combo_box_set_active (GtkComboBox *combo_box, - | ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from graphics-ligand-mesh-molecule.hh:30, + from graphics-info.h:151: +../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -22128,10 +22286,16 @@ from /usr/include/gtk-4.0/gtk/gtkwindow.h:32, from /usr/include/gtk-4.0/gtk/gtkaboutdialog.h:29, from /usr/include/gtk-4.0/gtk/gtk.h:33, - from setup-gui-components.cc:27: + from glade-callbacks-main-window.cc:28: /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cc-interface.hh:39, + from glade-callbacks-main-window.cc:59: +../coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +../coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ glade-callbacks-main-window.cc: In function 'void on_save_coordinates_filechooser_dialog_response(GtkDialog*, gint, gpointer)': glade-callbacks-main-window.cc:403:46: warning: 'GFile* gtk_file_chooser_get_file(GtkFileChooser*)' is deprecated [-Wdeprecated-declarations] 403 | GFile *file = gtk_file_chooser_get_file(GTK_FILE_CHOOSER(dialog)); @@ -22154,134 +22318,6 @@ /usr/include/gtk-4.0/gtk/deprecated/gtkfilechooser.h:119:22: note: declared here 119 | GFile * gtk_file_chooser_get_file (GtkFileChooser *chooser); | ^~~~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc: In function 'void setup_validation_graph_dialog()': -setup-gui-components.cc:162:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] - 162 | gtk_combo_box_set_model(GTK_COMBO_BOX(model_combobox),GTK_TREE_MODEL(graphics_info_t::validation_graph_model_list)); - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtk.h:94: -/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here - 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, - | ^~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc:163:31: warning: 'void gtk_combo_box_set_id_column(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] - 163 | gtk_combo_box_set_id_column(GTK_COMBO_BOX(model_combobox),0); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:142:15: note: declared here - 142 | void gtk_combo_box_set_id_column (GtkComboBox *combo_box, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc: In function 'void setup_ramachandran_plot_chooser_dialog()': -setup-gui-components.cc:170:27: warning: 'void gtk_combo_box_set_model(GtkComboBox*, GtkTreeModel*)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] - 170 | gtk_combo_box_set_model(GTK_COMBO_BOX(model_combobox), GTK_TREE_MODEL(graphics_info_t::ramachandran_plot_model_list)); - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:97:15: note: declared here - 97 | void gtk_combo_box_set_model (GtkComboBox *combo_box, - | ^~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc:171:31: warning: 'void gtk_combo_box_set_id_column(GtkComboBox*, int)' is deprecated: Use 'GtkDropDown' instead [-Wdeprecated-declarations] - 171 | gtk_combo_box_set_id_column(GTK_COMBO_BOX(model_combobox),0); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:142:15: note: declared here - 142 | void gtk_combo_box_set_id_column (GtkComboBox *combo_box, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc: In function 'void attach_css_style_class_to_overlays()': -setup-gui-components.cc:188:36: warning: 'void gtk_css_provider_load_from_data(GtkCssProvider*, const char*, gssize)' is deprecated: Use 'gtk_css_provider_load_from_string' instead [-Wdeprecated-declarations] - 188 | gtk_css_provider_load_from_data (provider, ".mainWindowOverlayChild { background: rgba(0,0,0,0.7); }", -1); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtk.h:99: -/usr/include/gtk-4.0/gtk/gtkcssprovider.h:49:18: note: declared here - 49 | void gtk_css_provider_load_from_data (GtkCssProvider *css_provider, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc: In lambda function: -setup-gui-components.cc:191:62: warning: 'GtkStyleContext* gtk_widget_get_style_context(GtkWidget*)' is deprecated [-Wdeprecated-declarations] - 191 | GtkStyleContext *context = gtk_widget_get_style_context(widget); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/usr/include/gtk-4.0/gtk/gtkwidget.h:710:19: note: declared here - 710 | GtkStyleContext * gtk_widget_get_style_context (GtkWidget *widget); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc:192:38: warning: 'void gtk_style_context_add_provider(GtkStyleContext*, GtkStyleProvider*, guint)' is deprecated [-Wdeprecated-declarations] - 192 | gtk_style_context_add_provider (context, GTK_STYLE_PROVIDER (provider), GTK_STYLE_PROVIDER_PRIORITY_APPLICATION); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/gtk.h:267: -/usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:64:6: note: declared here - 64 | void gtk_style_context_add_provider (GtkStyleContext *context, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc:193:35: warning: 'void gtk_style_context_add_class(GtkStyleContext*, const char*)' is deprecated [-Wdeprecated-declarations] - 193 | gtk_style_context_add_class (context, "mainWindowOverlayChild"); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkstylecontext.h:90:10: note: declared here - 90 | void gtk_style_context_add_class (GtkStyleContext *context, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc: In function 'void add_python_scripting_entry_completion(GtkWidget*)': -setup-gui-components.cc:215:61: warning: 'GtkEntryCompletion* gtk_entry_completion_new()' is deprecated [-Wdeprecated-declarations] - 215 | GtkEntryCompletion *completion = gtk_entry_completion_new(); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /usr/include/gtk-4.0/gtk/gtkentry.h:39, - from /usr/include/gtk-4.0/gtk/deprecated/gtktreeview.h:27, - from /usr/include/gtk-4.0/gtk/deprecated/gtkcombobox.h:26: -/usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:66:21: note: declared here - 66 | GtkEntryCompletion *gtk_entry_completion_new (void); - | ^~~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc:216:45: warning: 'void gtk_entry_completion_set_popup_completion(GtkEntryCompletion*, gboolean)' is deprecated [-Wdeprecated-declarations] - 216 | gtk_entry_completion_set_popup_completion(completion, TRUE); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:108:21: note: declared here - 108 | void gtk_entry_completion_set_popup_completion (GtkEntryCompletion *completion, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc:217:40: warning: 'void gtk_entry_completion_set_text_column(GtkEntryCompletion*, int)' is deprecated [-Wdeprecated-declarations] - 217 | gtk_entry_completion_set_text_column(completion, 0); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:127:21: note: declared here - 127 | void gtk_entry_completion_set_text_column (GtkEntryCompletion *completion, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc:218:47: warning: 'void gtk_entry_completion_set_minimum_key_length(GtkEntryCompletion*, int)' is deprecated [-Wdeprecated-declarations] - 218 | gtk_entry_completion_set_minimum_key_length(completion, 2); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:85:21: note: declared here - 85 | void gtk_entry_completion_set_minimum_key_length (GtkEntryCompletion *completion, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc:219:28: warning: 'void gtk_entry_set_completion(GtkEntry*, GtkEntryCompletion*)' is deprecated [-Wdeprecated-declarations] - 219 | gtk_entry_set_completion(GTK_ENTRY(entry), completion); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/gtkentry.h:160:21: note: declared here - 160 | void gtk_entry_set_completion (GtkEntry *entry, - | ^~~~~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc:286:44: warning: 'GtkListStore* gtk_list_store_new(int, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] - 286 | GtkListStore *store = gtk_list_store_new(1, G_TYPE_STRING); - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -In file included from /usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:26: -/usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:63:15: note: declared here - 63 | GtkListStore *gtk_list_store_new (int n_columns, - | ^~~~~~~~~~~~~~~~~~ -setup-gui-components.cc:290:28: warning: 'void gtk_list_store_append(GtkListStore*, GtkTreeIter*)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] - 290 | gtk_list_store_append( store, &iter ); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:125:15: note: declared here - 125 | void gtk_list_store_append (GtkListStore *list_store, - | ^~~~~~~~~~~~~~~~~~~~~ -setup-gui-components.cc:293:25: warning: 'void gtk_list_store_set(GtkListStore*, GtkTreeIter*, ...)' is deprecated: Use 'GListStore' instead [-Wdeprecated-declarations] - 293 | gtk_list_store_set( store, &iter, 0, c.c_str(), -1 ); - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkliststore.h:81:15: note: declared here - 81 | void gtk_list_store_set (GtkListStore *list_store, - | ^~~~~~~~~~~~~~~~~~ -setup-gui-components.cc:296:34: warning: 'void gtk_entry_completion_set_model(GtkEntryCompletion*, GtkTreeModel*)' is deprecated [-Wdeprecated-declarations] - 296 | gtk_entry_completion_set_model(completion, GTK_TREE_MODEL(store)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/gtk-4.0/gtk/deprecated/gtkentrycompletion.h:74:21: note: declared here - 74 | void gtk_entry_completion_set_model (GtkEntryCompletion *completion, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: link: g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z -Wl,relro -o .libs/coot-density-score-by-residue-bin density-score-by-residue-src.o ./.libs/libcootsumo.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-extras.so ../coords/.libs/libcoot-coords.so ../mini-mol/.libs/libcoot-mini-mol.so ../ligand/.libs/libcoot-ligand.so ../analysis/.libs/libcoot-analysis.so ../db-main/.libs/libcoot-db-main.so ../ideal/.libs/libcoot-ideal.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so ../cootaneer/.libs/libcootaneer.so ../compat/.libs/libcoot-compat.so -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -fopenmp -In file included from graphics-ligand-mesh-molecule.hh:30, - from graphics-info.h:151: -../lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -../lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from probe-clash-score.hh:32, - from c-interface-ligands-swig.hh:35, - from coot_wrap_python.cc:3466: -../utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -../utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ graphics-info.h: In static member function 'static GtkAllocation graphics_info_t::get_glarea_allocation()': graphics-info.h:1107:35: warning: 'void gtk_widget_get_allocation(GtkWidget*, GtkAllocation*)' is deprecated: Use 'gtk_widget_compute_bounds' instead [-Wdeprecated-declarations] 1107 | gtk_widget_get_allocation(glareas[0], &allocation); @@ -22301,9 +22337,9 @@ /usr/include/gtk-4.0/gtk/gtkwidget.h:479:23: note: declared here 479 | void gtk_widget_get_allocation (GtkWidget *widget, | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,--export-dynamic -Wl,-z,relro -o Coot main.o glade-callbacks.o glade-callbacks-main-window.o glade-callbacks-preferences.o glade-callbacks-shader-settings.o new-startup.o setup-gui-components.o create-menu-item-actions.o libcootsumo.la ../density-contour/libcoot-isosurface.la ../layla/libcoot-layla.la ../coot-utils/libcoot-map-utils.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lcurl -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lepoxy -L/usr/lib/aarch64-linux-gnu -lpython3.13 +/bin/sh ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,--export-dynamic -Wl,-z,relro -o Coot main.o glade-callbacks.o glade-callbacks-main-window.o glade-callbacks-preferences.o glade-callbacks-shader-settings.o new-startup.o setup-gui-components.o create-menu-item-actions.o libcootsumo.la ../density-contour/libcoot-isosurface.la ../layla/libcoot-layla.la ../coot-utils/libcoot-map-utils.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lcurl -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lepoxy -L/usr/lib/aarch64-linux-gnu -lpython3.13 libtool: link: g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,--export-dynamic -Wl,-z -Wl,relro -o .libs/Coot main.o glade-callbacks.o glade-callbacks-main-window.o glade-callbacks-preferences.o glade-callbacks-shader-settings.o new-startup.o setup-gui-components.o create-menu-item-actions.o ./.libs/libcootsumo.so ../density-contour/.libs/libcoot-isosurface.so ../layla/.libs/libcoot-layla.so ../coot-utils/.libs/libcoot-map-utils.so ../coords/.libs/libcoot-coords.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../lidia-core/.libs/libcoot-lidia-core.so ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lcurl -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lepoxy -L/usr/lib/aarch64-linux-gnu -lpython3.13 -fopenmp -/bin/bash ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined libcootsumo.la ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../geometry/libcoot-geometry.la ../pli/libcoot-pli.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o _coot.la -rpath /usr/lib/python3/dist-packages coot.lo coot_wrap_python.lo +/bin/sh ../libtool --tag=CXX --mode=link g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DPKGPYTHONDIR='"/usr/lib/python3/dist-packages/coot"' -DPYTHONDIR='"/usr/lib/python3/dist-packages"' -DXDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-aarch64-debian-trixie-sid-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined libcootsumo.la ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../geometry/libcoot-geometry.la ../pli/libcoot-pli.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o _coot.la -rpath /usr/lib/python3/dist-packages coot.lo coot_wrap_python.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot.o .libs/coot_wrap_python.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/src/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/coords/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/pli/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ./.libs/libcootsumo.so ../coot-utils/.libs/libcoot-coord-utils.so ../coords/.libs/libcoot-coords.so ../geometry/.libs/libcoot-geometry.so ../pli/.libs/libcoot-pli.so ../lidia-core/.libs/libcoot-lidia-core.so ../utils/.libs/libcoot-utils.so -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o 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-I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/CylinderPoint.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/CylinderPoint.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/CylinderPoint.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/CylinderPoint.cpp -[ 16%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.cpp.o [ 16%] Building CXX object 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.cpp.o -MF CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.cpp.o.d -o CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses/DirectedPositionedEntity.cpp [ 16%] Building CXX object CMakeFiles/cootapi.dir/MoleculesToTriangles/CXXClasses/DiscreteSegment.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-bonds-instanced.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds-instanced.cc [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-maps.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc [ 27%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-change-chain-id.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-change-chain-id.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:28: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ [ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-moltris.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-moltris.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:28: +In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-validation.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.cc:37: @@ -22578,8 +22616,6 @@ /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -[ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-validation.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-validation.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -22588,7 +22624,7 @@ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-moltris.cc:28: + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-change-chain-id.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -22600,28 +22636,6 @@ /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { | ^ -[ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-merge-molecules.cc -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, - from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds.cc:39: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -[ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-refine.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': @@ -22639,16 +22653,23 @@ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-change-chain-id.cc:26: + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-bonds.cc:39: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, + from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-moltris.cc:28: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -22661,36 +22682,38 @@ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +[ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-merge-molecules.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-merge-molecules.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, + from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:32: +/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +[ 28%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-refine.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-refine.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, - from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-validation.cc:35: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, - from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-backup.cc:32: -/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc:36: +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -22709,16 +22732,21 @@ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-maps.cc:36: +In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-merge-molecules.cc:28: + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-validation.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -22740,11 +22768,14 @@ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, + from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-merge-molecules.cc:28: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, @@ -22753,25 +22784,30 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -[ 29%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-replace-fragment.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +[ 29%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-replace-fragment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-replace-fragment.cc [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o -MF CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o.d -o CMakeFiles/cootapi.dir/api/coot-molecule-blender.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule-blender.cc [ 29%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-blender.cc.o @@ -22784,11 +22820,6 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, @@ -22797,12 +22828,13 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ +[ 29%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, @@ -22817,11 +22849,6 @@ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -22834,18 +22861,19 @@ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -[ 29%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ [ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-gltf.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-gltf.cc -[ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-bucca-ml-growing.cc -[ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-maps.cc -[ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-mmrrcc.cc -[ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-superpose.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, @@ -22855,15 +22883,34 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-bucca-ml-growing.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-bucca-ml-growing.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +[ 30%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-maps.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-maps.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, + from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, + from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc:40: +/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ +[ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-mmrrcc.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-mmrrcc.cc +[ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-superpose.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-superpose.cc [ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-modelling.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-modelling.cc -[ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB 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CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, @@ -22873,8 +22920,19 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 31%] Building CXX object CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o -MF CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o.d -o CMakeFiles/cootapi.dir/api/molecules-container-ligand-fitting.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc [ 32%] Building CXX object CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o -MF CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o.d -o CMakeFiles/cootapi.dir/api/phi-psi-prob.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/phi-psi-prob.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +[ 32%] Building CXX object CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -MF CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o.d -o CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/moorhen-h-bonds.cc +[ 32%] Building CXX object CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -MF CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o.d -o CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/rama-plot-phi-psi.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -22890,32 +22948,47 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, - from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, - from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.cc:40: -/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -[ 32%] Building CXX object CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -MF CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o.d -o CMakeFiles/cootapi.dir/api/moorhen-h-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/moorhen-h-bonds.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, + from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, + from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, + from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-maps.cc:27: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, + from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, + from /build/reproducible-path/coot-1.1.09+dfsg/ligand/wligand.hh:25, + from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:4: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, + from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, + from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, + from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-mmrrcc.cc:2: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -[ 32%] Building CXX object CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -MF CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o.d -o CMakeFiles/cootapi.dir/api/rama-plot-phi-psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/rama-plot-phi-psi.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, - from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-mmrrcc.cc:2: + from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-superpose.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -22926,15 +22999,6 @@ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, - from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, - from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, - from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-maps.cc:27: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -22945,7 +23009,7 @@ from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, - from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-superpose.cc:4: + from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-modelling.cc:4: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -22960,20 +23024,15 @@ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, - from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, - from /build/reproducible-path/coot-1.1.09+dfsg/ligand/wligand.hh:25, - from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:4: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ +[ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/daca.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/daca.cc.o -MF CMakeFiles/cootapi.dir/analysis/daca.cc.o.d -o CMakeFiles/cootapi.dir/analysis/daca.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/daca.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, + from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, + from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:6: +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -22985,26 +23044,12 @@ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, - from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, - from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, - from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-modelling.cc:4: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, @@ -23014,26 +23059,12 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/daca.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/daca.cc.o -MF CMakeFiles/cootapi.dir/analysis/daca.cc.o.d -o CMakeFiles/cootapi.dir/analysis/daca.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/daca.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47, - from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, - from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:6: -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -23045,6 +23076,11 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -23053,31 +23089,35 @@ | ^ [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o -MF CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o.d -o CMakeFiles/cootapi.dir/analysis/kolmogorov.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/kolmogorov.cc -[ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/stats.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/stats.cc.o -MF CMakeFiles/cootapi.dir/analysis/stats.cc.o.d -o CMakeFiles/cootapi.dir/analysis/stats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.cc:25: +/build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc: In member function 'float molecules_container_t::fit_to_map_by_random_jiggle_with_blur_using_cid(int, int, const std::string&, float, int, float)': +/build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-ligand-fitting.cc:414:53: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 414 | auto p = coot::util::mean_and_variance(xmap); + | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/kolmogorov.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ +[ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/stats.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/stats.cc.o -MF CMakeFiles/cootapi.dir/analysis/stats.cc.o.d -o CMakeFiles/cootapi.dir/analysis/stats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.cc [ 33%] Building CXX object CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o -MF CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o.d -o CMakeFiles/cootapi.dir/analysis/bfkurt.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/bfkurt.cc -[ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/mogul.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o -MF CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o.d -o CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/analysis/typed-distances.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/analysis/mogul.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 34%] Building CXX object CMakeFiles/cootapi.dir/analysis/typed-distances.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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object CMakeFiles/cootapi.dir/density-contour/density-contour-triangles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o -MF CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/occlusion.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/occlusion.cc +[ 36%] Building CXX object CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o -MF CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o.d -o CMakeFiles/cootapi.dir/density-contour/gaussian-surface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/density-contour/gaussian-surface.cc In file included from 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-I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o -MF CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o.d -o CMakeFiles/cootapi.dir/ideal/chi-squareds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/chi-squareds.cc [ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o -MF CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o.d -o CMakeFiles/cootapi.dir/ideal/trans-peptide.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/trans-peptide.cc +[ 40%] Building CXX object CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o 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-DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o -MF CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o.d -o CMakeFiles/cootapi.dir/ideal/model-bond-deltas.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/parallel-planes.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -[ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/make-restraints.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/parallel-planes.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +[ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/make-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/make-restraints.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/torsion-bonds.cc:25: + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc: In member function 'std::pair coot::simple_restraint::distortion(mmdb::Atom**, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc:4068:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 4068 | coot::simple_restraint::distortion(mmdb::PAtom *atoms, const double &lj_epsilon) const { - | ^~~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc:31: + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/torsion-bonds.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -23195,38 +23227,28 @@ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc: In member function 'std::pair coot::simple_restraint::distortion(mmdb::Atom**, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.cc:4068:82: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 4068 | coot::simple_restraint::distortion(mmdb::PAtom *atoms, const double &lj_epsilon) const { + | ^~~~~ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -[ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -MF CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o.d -o CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/pull-restraint.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chi-squareds.cc:41: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -[ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/neutron.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/neutron.cc.o -MF CMakeFiles/cootapi.dir/ideal/neutron.cc.o.d -o CMakeFiles/cootapi.dir/ideal/neutron.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/neutron.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/trans-peptide.cc:24: + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/make-restraints.cc:43: + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chi-squareds.cc:41: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc:27: + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/trans-peptide.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -23239,51 +23261,71 @@ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/pull-restraint.cc:30: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -/build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc: In member function 'void coot::restraints_container_t::analyze_for_bad_restraints(coot::restraint_type_t, double)': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc:2354:97: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2354 | std::pair distortion_pair = rest.distortion(atom, lennard_jones_epsilon); // 2nd arg is not used for bonds - | ^ -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/model-bond-deltas.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ +[ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -MF CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o.d -o CMakeFiles/cootapi.dir/ideal/pull-restraint.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/pull-restraint.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +[ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/neutron.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/neutron.cc.o -MF CMakeFiles/cootapi.dir/ideal/neutron.cc.o.d -o CMakeFiles/cootapi.dir/ideal/neutron.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/neutron.cc +/build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc: In member function 'void coot::restraints_container_t::analyze_for_bad_restraints(coot::restraint_type_t, double)': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/ng.cc:2354:97: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2354 | std::pair distortion_pair = rest.distortion(atom, lennard_jones_epsilon); // 2nd arg is not used for bonds + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/neutron.cc:27: + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/make-restraints.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -MF CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o.d -o CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/coot-compare-residues.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +[ 41%] Building CXX object CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -MF CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o.d -o CMakeFiles/cootapi.dir/ideal/coot-compare-residues.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/coot-compare-residues.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/pull-restraint.cc:30: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/neutron.cc:27: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/link-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/link-restraints.cc [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/mods.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/mods.cc.o -MF CMakeFiles/cootapi.dir/ideal/mods.cc.o.d -o CMakeFiles/cootapi.dir/ideal/mods.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/mods.cc +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o -MF CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o.d -o CMakeFiles/cootapi.dir/ideal/extra-restraints-kk.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints-kk.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/coot-compare-residues.cc:24: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ [ 42%] Building CXX object CMakeFiles/cootapi.dir/ideal/chirals.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/chirals.cc.o -MF CMakeFiles/cootapi.dir/ideal/chirals.cc.o.d -o CMakeFiles/cootapi.dir/ideal/chirals.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/coot-compare-residues.cc:24: + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/link-restraints.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -23294,50 +23336,29 @@ | ^ [ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o -MF CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o.d -o CMakeFiles/cootapi.dir/ideal/extra-restraints.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/link-restraints.cc:27: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, - from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc:33: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -[ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/gradients.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/gradients.cc.o -MF CMakeFiles/cootapi.dir/ideal/gradients.cc.o.d -o CMakeFiles/cootapi.dir/ideal/gradients.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/gradients.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mods.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints-kk.cc:24: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -[ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -MF CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o.d -o CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints.cc:28: +In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, + from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -23346,16 +23367,19 @@ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +[ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/gradients.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/gradients.cc.o -MF CMakeFiles/cootapi.dir/ideal/gradients.cc.o.d -o CMakeFiles/cootapi.dir/ideal/gradients.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/gradients.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/chirals.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +[ 43%] Building CXX object CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -MF CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o.d -o CMakeFiles/cootapi.dir/ideal/regularize-minimol.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.cc [ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/flanking.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/flanking.cc.o -MF CMakeFiles/cootapi.dir/ideal/flanking.cc.o.d -o CMakeFiles/cootapi.dir/ideal/flanking.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/flanking.cc -[ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/distortion.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/distortion.cc.o -MF CMakeFiles/cootapi.dir/ideal/distortion.cc.o.d -o CMakeFiles/cootapi.dir/ideal/distortion.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/distortion.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/gradients.cc:39: + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/extra-restraints.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -23364,6 +23388,12 @@ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +[ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/distortion.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/distortion.cc.o -MF CMakeFiles/cootapi.dir/ideal/distortion.cc.o.d -o CMakeFiles/cootapi.dir/ideal/distortion.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/distortion.cc +[ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -MF CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o.d -o CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint-kk.cc +[ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -MF CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o.d -o CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.cc:22: @@ -23371,22 +23401,16 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -MF CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o.d -o CMakeFiles/cootapi.dir/ideal/simple-restraint-kk.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint-kk.cc -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ +[ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -MF CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o.d -o CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/phi-psi.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/distortion.cc:36: + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/flanking.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 44%] Building CXX object CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -MF CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o.d -o CMakeFiles/cootapi.dir/ideal/crankshaft.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/flanking.cc:32: + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/gradients.cc:39: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -23395,85 +23419,115 @@ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2613 | return zo_rama.df(residue_type, phir, psir); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -MF CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o.d -o CMakeFiles/cootapi.dir/ideal/phi-psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/phi-psi.cc /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/lograma.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/lograma.cpp.o -MF CMakeFiles/cootapi.dir/ideal/lograma.cpp.o.d -o CMakeFiles/cootapi.dir/ideal/lograma.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/lograma.cpp -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint-kk.cc:23: +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:42, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.hh:37, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:30: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 45%] Building CXX object CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o -MF CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o.d -o CMakeFiles/cootapi.dir/ideal/process-dfs-in-range.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/process-dfs-in-range.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/distortion.cc:36: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2613 | return zo_rama.df(residue_type, phir, psir); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +[ 46%] Building CXX object CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -MF CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o.d -o CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint-kk.cc:23: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:42, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.hh:37, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:30: + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 46%] Building CXX object CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -MF CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o.d -o CMakeFiles/cootapi.dir/ideal/zo-rama.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.cc +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:36: +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:37: +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1393:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1393 | const zo::rama_table_set &zorts) const { + | ^~~~~ [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/align-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/align-utils.cc.o -MF CMakeFiles/cootapi.dir/utils/align-utils.cc.o.d -o CMakeFiles/cootapi.dir/utils/align-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/align-utils.cc [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o -MF CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o.d -o CMakeFiles/cootapi.dir/utils/atomic-numbers.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/atomic-numbers.cc [ 46%] Building CXX object CMakeFiles/cootapi.dir/utils/backward.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK 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/build/reproducible-path/coot-1.1.09+dfsg/utils/backward.cpp +[ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/colour-holder.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -MF CMakeFiles/cootapi.dir/utils/colour-holder.cc.o.d -o CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/colour-holder.cc +[ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -MF CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o.d -o CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-fasta.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/atomic-numbers.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:42, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.cc:29: +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/process-dfs-in-range.cc:37: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -MF CMakeFiles/cootapi.dir/utils/colour-holder.cc.o.d -o CMakeFiles/cootapi.dir/utils/colour-holder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/colour-holder.cc -[ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -MF CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o.d -o CMakeFiles/cootapi.dir/utils/coot-fasta.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-fasta.cc +[ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/coot-utils.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -MF CMakeFiles/cootapi.dir/utils/coot-utils.cc.o.d -o CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.cc +[ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/dodec.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/dodec.cc.o -MF CMakeFiles/cootapi.dir/utils/dodec.cc.o.d -o CMakeFiles/cootapi.dir/utils/dodec.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/dodec.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-fasta.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -MF CMakeFiles/cootapi.dir/utils/coot-utils.cc.o.d -o CMakeFiles/cootapi.dir/utils/coot-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:37: -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -[ 47%] Building CXX object CMakeFiles/cootapi.dir/utils/dodec.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/dodec.cc.o -MF CMakeFiles/cootapi.dir/utils/dodec.cc.o.d -o CMakeFiles/cootapi.dir/utils/dodec.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/dodec.cc -/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1393:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1393 | const zo::rama_table_set &zorts) const { - | ^~~~~ [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/radix.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/radix.cc.o -MF CMakeFiles/cootapi.dir/utils/radix.cc.o.d -o CMakeFiles/cootapi.dir/utils/radix.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/radix.cc +/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:871:71: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 871 | std::pair grads = zorts.df(pp, rt); + | ^ +/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, + | ^~~~ [ 48%] Building CXX object CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o -MF CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o.d -o CMakeFiles/cootapi.dir/utils/gdk-keysyms.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/gdk-keysyms.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.cc:59: @@ -23485,50 +23539,35 @@ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o -MF CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o.d -o CMakeFiles/cootapi.dir/utils/hsv-rgb.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/hsv-rgb.cc [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o -MF CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o.d -o CMakeFiles/cootapi.dir/utils/pir-alignment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/pir-alignment.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/process-dfs-in-range.cc:37: +In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/gdk-keysyms.cc:23: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/gdk-keysyms.cc:23: +[ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o -MF CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o.d -o CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/setup-syminfo.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/pir-alignment.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/hsv-rgb.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o -MF CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o.d -o CMakeFiles/cootapi.dir/utils/setup-syminfo.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/setup-syminfo.cc -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/pir-alignment.cc:28: +In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/setup-syminfo.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2613 | return zo_rama.df(residue_type, phir, psir); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/split-indices.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/split-indices.cc.o -MF CMakeFiles/cootapi.dir/utils/split-indices.cc.o.d -o CMakeFiles/cootapi.dir/utils/split-indices.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/split-indices.cc [ 49%] Building CXX object CMakeFiles/cootapi.dir/utils/logging.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/logging.cc.o -MF CMakeFiles/cootapi.dir/utils/logging.cc.o.d -o CMakeFiles/cootapi.dir/utils/logging.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/logging.cc -/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:871:71: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 871 | std::pair grads = zorts.df(pp, rt); - | ^ -/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, - | ^~~~ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/setup-syminfo.cc:27: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ [ 50%] Building CXX object CMakeFiles/cootapi.dir/utils/threads.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/utils/threads.cc.o -MF CMakeFiles/cootapi.dir/utils/threads.cc.o.d -o CMakeFiles/cootapi.dir/utils/threads.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/utils/threads.cc [ 50%] Building CXX object CMakeFiles/cootapi.dir/utils/win-compat.cc.o @@ -23537,20 +23576,20 @@ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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/build/reproducible-path/coot-1.1.09+dfsg/db-main/db-strands.cc [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/residue-distortions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o -MF CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o.d -o CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/utils/threads.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/cootapi.dir/high-res/coot-atom-graph.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.cc -[ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o -MF CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o.d -o CMakeFiles/cootapi.dir/high-res/sequence-assignment.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/sequence-assignment.cc [ 51%] Building CXX object CMakeFiles/cootapi.dir/high-res/high-res.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/high-res/high-res.cc.o -MF CMakeFiles/cootapi.dir/high-res/high-res.cc.o.d -o CMakeFiles/cootapi.dir/high-res/high-res.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/high-res/high-res.cc [ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/flev-annotations.cc.o @@ -23562,9 +23601,6 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2613:27: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2613 | return zo_rama.df(residue_type, phir, psir); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.cc:27: @@ -23572,6 +23608,13 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -MF CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o.d -o CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/protein-ligand-interactions.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/high-res/sequence-assignment.cc:30: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/high-res.cc:24: @@ -23579,6 +23622,10 @@ /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:833:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 833 | coot::crankshaft::optimize_a_triple::df(const gsl_vector *v, + | ^~~~ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/coot-atom-graph.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/high-res/high-res.cc:27: @@ -23586,34 +23633,18 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/high-res/sequence-assignment.cc:30: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -[ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -MF CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o.d -o CMakeFiles/cootapi.dir/pli/protein-ligand-interactions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/protein-ligand-interactions.cc -[ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -MF CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o.d -o CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/sdf-interface.cc -[ 52%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cmtz-interface.cc -/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In static member function 'static void coot::crankshaft::optimize_a_triple::df(const gsl_vector*, void*, gsl_vector*)': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:833:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 833 | coot::crankshaft::optimize_a_triple::df(const gsl_vector *v, - | ^~~~ /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc: In member function 'std::pair coot::crankshaft::probability_of_spin_orientation(const std::pair&, const std::string&, const std::string&, const zo::rama_table_set&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/crankshaft.cc:1390:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1390 | coot::crankshaft::probability_of_spin_orientation(const std::pair &ppp, | ^~~~ +[ 52%] Building CXX object CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -MF CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o.d -o CMakeFiles/cootapi.dir/pli/sdf-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/pli/sdf-interface.cc +[ 52%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cmtz-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cmtz-interface.cc [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/lidia-core-functions.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-selection-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/pli/sdf-interface.cc:147: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ [ 53%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/merge-atom-selections.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/diff-diff-map-peaks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/diff-diff-map-peaks.cc -[ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL 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CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -MF CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o.d -o CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shiftfield.cpp In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/merge-atom-selections.cc:34: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/stack-and-pair.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/pli/sdf-interface.cc:147: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +[ 54%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/gltf-export.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/gltf-export.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ -[ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/spherical-harmonics.cc -[ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/peak-search-from-list.cc -[ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o -/usr/bin/c++ 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -MF CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o.d -o CMakeFiles/cootapi.dir/coot-utils/shiftfield.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shiftfield.cpp +[ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/stack-and-pair.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/stack-and-pair.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/shiftfield.h:31, @@ -23655,6 +23685,17 @@ /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ +[ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/spherical-harmonics.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/spherical-harmonics.cc +[ 55%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/peak-search-from-list.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/peak-search-from-list.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc:915: +/build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': +/build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 139 | std::pair median_and_iqr() const { + | ^ +[ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/helix-analysis.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/helix-analysis.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/segmap.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/segmap.cc [ 56%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cablam-markup.cc.o @@ -23663,11 +23704,6 @@ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fib-sphere.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/fib-sphere.cc [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/find-water-baddies.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/find-water-baddies.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-selection-container.cc:915: -/build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': -/build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 139 | std::pair median_and_iqr() const { - | ^ [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/blob-line.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/blob-line.cc [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-glyco.cc.o @@ -23679,13 +23715,15 @@ | ^ [ 57%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils.cc +[ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/merge-molecules.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-glyco.cc:26: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/find-water-baddies.cc:29: + from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/blob-line.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { @@ -23695,22 +23733,25 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/texture-as-floats.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/blob-line.cc:27: + from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/find-water-baddies.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -[ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/merge-molecules.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/merge-molecules.cc -[ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/texture-as-floats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/texture-as-floats.cc [ 58%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.cc [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/water-coordination.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/water-coordination.cc [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bonded-pairs.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bonded-pairs.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.cc:32: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/c-beta-deviations.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/c-beta-deviations.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, @@ -23719,26 +23760,21 @@ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.cc:32: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ [ 59%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/atom-tools.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tools.cc [ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-rama.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-rama.cc +[ 60%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/secondary-structure-headers.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/polar-atoms.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/polar-atoms.cc -[ 61%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/helix-like.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" 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-I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bricks.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/pepflip-using-difference-map.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-overlaps.cc:33: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/jed-flip.hh:32, @@ -23788,6 +23817,13 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bricks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bricks.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-overlaps.cc:33: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/mutate.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/mutate.cc [ 63%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/elastic.cc.o @@ -23806,15 +23842,29 @@ | ^ [ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-h-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-h-bonds.cc +[ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-nucleotides.cc +[ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/glyco-torsions.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:39: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-nucleotides.cc:25: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In function 'std::pair coot::util::mean_and_variance(const clipper::Xmap&)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:973:63: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/glyco-torsions.cc:43: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:3842: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -23830,8 +23880,6 @@ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ -[ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-coord-utils-nucleotides.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-nucleotides.cc In file included from /usr/include/c++/14/bits/stl_algobase.h:64, from /usr/include/c++/14/algorithm:60, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:23: @@ -23856,22 +23904,8 @@ /usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1132 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ -[ 64%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/glyco-torsions.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/glyco-torsions.cc [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fast-eigens.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/fast-eigens.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-utils-nucleotides.cc:25: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/glyco-torsions.cc:43: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -[ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-shelx-ins.cc /usr/include/clipper/core/hkl_data.h: In member function 'void clipper::HKL_data::compute(const clipper::HKL_data&, const clipper::HKL_data&, const C&) [with S1 = clipper::datatypes::F_sigF; S2 = clipper::datatypes::Phi_fom; C = clipper::datatypes::Compute_fphi_from_fsigf_phifom; T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } @@ -23880,13 +23914,6 @@ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:973:1: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 973 | coot::util::mean_and_variance(const clipper::Xmap &xmap) { | ^~~~ -[ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contacts-by-bricks.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-shelx-ins.cc:31: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc: In lambda function: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4656:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4656 | data.push_back(std::make_pair(static_cast(i), static_cast(r))); @@ -23895,15 +23922,30 @@ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:4713:55: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 4713 | std::pair mv = mean_and_variance(xmap); | ^ +[ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot-shelx-ins.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-shelx-ins.cc +[ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/contacts-by-bricks.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contacts-by-bricks.cc [ 65%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/lsq-improve.cc +[ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/trim.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/trim.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/trim.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-shelx-ins.cc:31: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contacts-by-bricks.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/lsq-improve.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/lsq-improve.cc -[ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/trim.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/trim.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/trim.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, + from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/trim.cc:21: +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o -MF CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o.d -o CMakeFiles/cootapi.dir/coot-utils/coot_shiftfield.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp [ 66%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/coot-fffear.cc.o @@ -23929,12 +23971,6 @@ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/trim.cc:21: -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ /usr/include/clipper/core/hkl_data.h: In instantiation of 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:209:29: required from here 209 | fphi[ih] = fc[ih.hkl()]; @@ -23942,11 +23978,6 @@ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-lsq.cc:23: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:153:67: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 153 | for ( HRI ih = fo.first(); !ih.last(); ih.next() ) fo_all[ih] = fo0[ih.hkl()]; @@ -23958,6 +23989,11 @@ | ^~~~~~~~~~~ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-lsq.cc:23: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-heavy.hh:28, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc:33: @@ -23965,24 +24001,20 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/strand-fragments.cc -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc: In constructor 'coot::util::fffear_search::fffear_search(mmdb::Manager*, int, const clipper::Xmap&, float, bool)': -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc:159:70: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 159 | std::pair mv = coot::util::mean_and_variance(xmap); - | ^ /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_sigF]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/clipper/core/hkl_data.h: In member function 'T clipper::HKL_data::operator[](const clipper::HKL&) const [with T = clipper::datatypes::F_phi]': /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 +[ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/strand-fragments.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/strand-fragments.cc [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/bonded-atoms.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/bonded-atoms.cc +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc: In constructor 'coot::util::fffear_search::fffear_search(mmdb::Manager*, int, const clipper::Xmap&, float, bool)': +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-fffear.cc:159:70: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 159 | std::pair mv = coot::util::mean_and_variance(xmap); + | ^ [ 67%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/fragment-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/fragment-container.cc -[ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/positron.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/positron.cc -[ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/maps-spherical.cc /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp: In function 'void coot::shift_field_b_factor_refinement(const clipper::HKL_data >&, const clipper::HKL_data&, mmdb::Manager*, int)': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:121:1: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 121 | coot::shift_field_b_factor_refinement(const clipper::HKL_data< clipper::datatypes::F_sigF > &fo0, @@ -23992,35 +24024,37 @@ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot_shiftfield.cpp:209:29: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | fphi[ih] = fc[ih.hkl()]; | ^ +[ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/positron.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/positron.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/positron.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/positron.cc +[ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/maps-spherical.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/maps-spherical.cc +[ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/peak-search.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/positron.cc:32: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/xmap-stats.cc +[ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/sfcalc-genmap.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/maps-spherical.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 68%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -[ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/peak-search.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/peak-search.cc -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/xmap-stats.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/xmap-stats.cc -[ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/sfcalc-genmap.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/sfcalc-genmap.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/reduce.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/reduce.cc [ 69%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/contact-info.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/contact-info.cc -[ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/hole.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/reduce.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/slurp-map.cc +[ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/hole.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/hole.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/hole.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/clipper.h:7, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/sfcalc-genmap.cc:30: @@ -24028,24 +24062,15 @@ /usr/include/clipper/core/hkl_data.h:308:96: note: parameter passing for argument of type 'clipper::datatypes::ABCD' when C++17 is enabled changed to match C++14 in GCC 10.1 308 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src[ih] ); } | ^~~~ +[ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/slurp-map.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/slurp-map.cc +[ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc: In member function 'std::pair coot::hole::optimize_point(const clipper::Coord_orth&, int)': -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc:253:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 253 | coot::hole::optimize_point(const clipper::Coord_orth &pt, int selhnd) { - | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/slurp-map.cc:26: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -[ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/read-sm-cif.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc -[ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/exp-fit.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/read-sm-cif.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -24060,6 +24085,17 @@ /usr/include/clipper/core/hkl_data.h:478:23: note: parameter passing for argument of type 'clipper::datatypes::F_sigF' when C++17 is enabled changed to match C++14 in GCC 10.1 478 | template T HKL_data::operator[] (const HKL& hkl) const | ^~~~~~~~~~~ +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc: In member function 'std::pair coot::hole::optimize_point(const clipper::Coord_orth&, int)': +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/hole.cc:253:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 253 | coot::hole::optimize_point(const clipper::Coord_orth &pt, int selhnd) { + | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/slurp-map.cc:26: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +[ 70%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/exp-fit.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/exp-fit.cc [ 71%] Building CXX object CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o -MF CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o.d -o CMakeFiles/cootapi.dir/coot-utils/cylinder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/cylinder.cc [ 71%] Building CXX object 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-D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o -MF CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o.d -o CMakeFiles/cootapi.dir/coords/phenix-geo-bonds.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo-bonds.cc [ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o -MF CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o.d -o CMakeFiles/cootapi.dir/coords/Bond_lines_ext.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines_ext.cc +[ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc +[ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/utils.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/utils.cc.o -MF CMakeFiles/cootapi.dir/coords/utils.cc.o.d -o CMakeFiles/cootapi.dir/coords/utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/utils.cc +[ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -MF CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o.d -o CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, from /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo-bonds.cc:25: @@ -24087,29 +24129,32 @@ /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.cc:59:1: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 59 | coot::util::map_fill_from_mtz(clipper::Xmap *xmap, | ^~~~ -[ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb-crystal.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc -[ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/utils.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/utils.cc.o -MF CMakeFiles/cootapi.dir/coords/utils.cc.o.d -o CMakeFiles/cootapi.dir/coords/utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/utils.cc -[ 73%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb.cc.o +[ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/mmdb.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.cc -[ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -MF CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o.d -o CMakeFiles/cootapi.dir/coords/phenix-geo.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo.cc +[ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/Cartesian.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -MF CMakeFiles/cootapi.dir/coords/Cartesian.cc.o.d -o CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Cartesian.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/phenix-geo.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/loop-path.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/loop-path.cc.o -MF CMakeFiles/cootapi.dir/coords/loop-path.cc.o.d -o CMakeFiles/cootapi.dir/coords/loop-path.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/loop-path.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, - from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.cc:43: + from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc:48: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc:50: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, - from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc:48: + from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.cc:43: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -24119,15 +24164,6 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-crystal.cc:50: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -[ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -MF CMakeFiles/cootapi.dir/coords/Cartesian.cc.o.d -o CMakeFiles/cootapi.dir/coords/Cartesian.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Cartesian.cc -[ 74%] Building CXX object CMakeFiles/cootapi.dir/coords/loop-path.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/loop-path.cc.o -MF CMakeFiles/cootapi.dir/coords/loop-path.cc.o.d -o CMakeFiles/cootapi.dir/coords/loop-path.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/loop-path.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/coot-close.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/coot-close.cc.o -MF CMakeFiles/cootapi.dir/coords/coot-close.cc.o.d -o CMakeFiles/cootapi.dir/coords/coot-close.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/coot-close.cc [ 75%] Building CXX object CMakeFiles/cootapi.dir/coords/cos-sin.cc.o @@ -24138,66 +24174,66 @@ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o -MF CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o.d -o CMakeFiles/cootapi.dir/coords/mmdb-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-extras.cc [ 76%] Building CXX object CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o -MF CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o.d -o CMakeFiles/cootapi.dir/coords/Bond_lines.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc -[ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-link.cc -[ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/rotamer-markup.cc:29: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse-link.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-link.cc +[ 76%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, + from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, + from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-extras.cc:35: +/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': +/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 548 | bool at_2_is_singleton) const { + | ^ [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/main-chain.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/main-chain.cc.o -MF CMakeFiles/cootapi.dir/geometry/main-chain.cc.o.d -o CMakeFiles/cootapi.dir/geometry/main-chain.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/main-chain.cc [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o -MF CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o.d -o CMakeFiles/cootapi.dir/geometry/cif-parse-mon-lib.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-mon-lib.cc -[ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-geometry.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb.hh:27, - from /build/reproducible-path/coot-1.1.09+dfsg/coords/mmdb-extras.cc:35: + from /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc:36: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +[ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-geometry.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-geometry.cc [ 77%] Building CXX object CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o -MF CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dictionary-residue.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/dictionary-residue.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-mon-lib.cc:25: +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc:41: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse.cc:33: +In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse-link.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ [ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o -MF CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o.d -o CMakeFiles/cootapi.dir/geometry/dict-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/dict-utils.cc -[ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -MF CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o.d -o CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/read-sbase.cc -[ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o -MF 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-/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': -/build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 548 | bool at_2_is_singleton) const { - | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coords/Bond_lines.cc:41: +[ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -MF CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o.d -o CMakeFiles/cootapi.dir/geometry/read-sbase.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/read-sbase.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/cif-parse.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 78%] Building CXX object CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o -MF CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o.d -o CMakeFiles/cootapi.dir/geometry/hydrophobic.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/hydrophobic.cc [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/energy-lib.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS 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/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -24212,9 +24248,7 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o -MF CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o.d -o CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/srs-interface.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/dictionary-residue.cc:35: +In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/read-sbase.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -24224,6 +24258,8 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/srs-interface.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL 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/build/reproducible-path/coot-1.1.09+dfsg/geometry/srs-interface.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -24231,13 +24267,13 @@ | ^ [ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o -MF CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o.d -o CMakeFiles/cootapi.dir/geometry/residue-and-atom-specs.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/residue-and-atom-specs.cc +[ 79%] Building CXX object CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 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-Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o -MF CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o.d -o CMakeFiles/cootapi.dir/geometry/protein-geometry-mmdb.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/protein-geometry-mmdb.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK 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CMakeFiles/cootapi.dir/geometry/mol-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/mol-utils.cc [ 80%] Building CXX object CMakeFiles/cootapi.dir/geometry/dreiding.cc.o @@ -24248,13 +24284,13 @@ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o -MF CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o.d -o CMakeFiles/cootapi.dir/geometry/lbg-graph.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/lbg-graph.cc +[ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -MF CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o.d -o CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/glyco-tools.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/chem_mods.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 81%] Building CXX object CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -MF CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o.d -o CMakeFiles/cootapi.dir/geometry/glyco-tools.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/geometry/glyco-tools.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/geometry/link.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ 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CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o -MF CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o.d -o CMakeFiles/cootapi.dir/mini-mol/atom-quads.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/atom-quads.cc [ 83%] Building CXX object CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/cootilus-build.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/cootilus/cootilus-build.cpp +[ 83%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/cootilus/nautilus-join.cpp /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.cc: In member function 'std::pair coot::minimol::molecule::get_pos() const': /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.cc:1654:36: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1654 | coot::minimol::molecule::get_pos() const { | ^~~~~ -[ 83%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nautilus-join.cpp.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/cootilus/nautilus-ss-find.cpp.o -MF CMakeFiles/cootapi.dir/cootilus/nautilus-ss-find.cpp.o.d -o CMakeFiles/cootapi.dir/cootilus/nautilus-ss-find.cpp.o -c /build/reproducible-path/coot-1.1.09+dfsg/cootilus/nautilus-ss-find.cpp [ 84%] Building CXX object CMakeFiles/cootapi.dir/cootilus/nautilus-target.cpp.o @@ -24318,15 +24354,15 @@ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o -MF CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o.d -o CMakeFiles/cootapi.dir/lidia-core/get-residue.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/get-residue.cc [ 86%] Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o -MF CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o.d -o CMakeFiles/cootapi.dir/angles/AngleInfo-angle-torsions-autogen.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/angles/AngleInfo-angle-torsions-autogen.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, - from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.cc:27: +In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.cc:25: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ [ 86%] Building CXX object CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o -MF CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o.d -o CMakeFiles/cootapi.dir/angles/AngleInfo-theta_2-autogen.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/angles/AngleInfo-theta_2-autogen.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.cc:25: +In file included from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.hh:32, + from /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lbg-molfile.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh: In member function 'std::pair lig_build::bond_t::coords_for_single_bond(const lig_build::atom_t&, const lig_build::atom_t&, bool, bool) const': /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { @@ -24337,15 +24373,15 @@ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/dipole.cc.o -MF CMakeFiles/cootapi.dir/ligand/dipole.cc.o.d -o CMakeFiles/cootapi.dir/ligand/dipole.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/dipole.cc [ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o -MF CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o.d -o CMakeFiles/cootapi.dir/ligand/chi-angles.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/chi-angles.cc -[ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -MF CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o.d -o CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/monomer-utils.cc -[ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-score-card.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/dipole.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 87%] Building CXX object CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -MF CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o.d -o CMakeFiles/cootapi.dir/ligand/monomer-utils.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/monomer-utils.cc +[ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand-score-card.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-score-card.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o -MF CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o.d -o CMakeFiles/cootapi.dir/ligand/chi-angles-autogen.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/chi-angles-autogen.cc [ 88%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand.cc.o @@ -24361,8 +24397,6 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -MF CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o.d -o CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/dunbrack.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-coord-extras.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/chi-angles.cc:23: @@ -24370,6 +24404,8 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -MF CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o.d -o CMakeFiles/cootapi.dir/ligand/dunbrack.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/dunbrack.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:60: @@ -24377,11 +24413,6 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc:28: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/dunbrack.cc:27: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -24394,18 +24425,19 @@ /build/reproducible-path/coot-1.1.09+dfsg/lidia-core/lig-build.hh:548:84: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 548 | bool at_2_is_singleton) const { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc:28: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +[ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -MF CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o.d -o CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/primitive-chi-angles.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.cc:72: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -[ 89%] Building CXX object CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -MF CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o.d -o CMakeFiles/cootapi.dir/ligand/primitive-chi-angles.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/primitive-chi-angles.cc -/build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc: In function 'std::pair > coot::get_clash_score(const minimol::molecule&, atom_selection_container_t, int)': -/build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc:596:76: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 596 | std::pair rotamer_info = a_rotamer.get_pos(); - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, @@ -24418,6 +24450,16 @@ /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o -MF CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rotamer-tables.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer-tables.cc [ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o -MF CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o.d -o CMakeFiles/cootapi.dir/ligand/side-chain-densities.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc +/build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc: In function 'std::pair > coot::get_clash_score(const minimol::molecule&, atom_selection_container_t, int)': +/build/reproducible-path/coot-1.1.09+dfsg/ligand/backrub-rotamer.cc:596:76: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 596 | std::pair rotamer_info = a_rotamer.get_pos(); + | ^ +[ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -MF CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o.d -o CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/richardson-rotamers.cc +[ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligands-db.cc +[ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer-tables.cc:31: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -24431,32 +24473,28 @@ /usr/include/clipper/core/hkl_data.h:311:96: note: parameter passing for argument of type 'clipper::datatypes::F_phi' when C++17 is enabled changed to match C++14 in GCC 10.1 311 | { for (HKL_info::HKL_reference_index ih=parent_hkl_info->first(); !ih.last(); ih.next()) list[ih.index()] = op( ih, src1[ih], src2[ih] ); } | ^~~~ -[ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -MF CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o.d -o CMakeFiles/cootapi.dir/ligand/richardson-rotamers.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/richardson-rotamers.cc -[ 90%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -MF CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o.d -o CMakeFiles/cootapi.dir/ligand/ligands-db.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligands-db.cc -[ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/ligand-extras.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" 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+/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc:38: /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': /build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 139 | std::pair median_and_iqr() const { | ^ +/build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc: In member function 'std::pair coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager*) const': +/build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc:176:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 176 | coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager *mol) const { + | ^~~~~ [ 91%] Building CXX object CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o -MF CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o.d -o CMakeFiles/cootapi.dir/ligand/residue_by_phi_psi.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.cc -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc:36: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc: In member function 'std::pair coot::density_box_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain-densities.cc:1293:42: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1293 | coot::density_box_t::mean_and_variance() const { | ^~~~~ -/build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc: In member function 'std::pair coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager*) const': -/build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand-extras.cc:176:73: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 176 | coot::ligand::mean_and_variance_where_the_atoms_are(mmdb::Manager *mol) const { 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object CMakeFiles/cootapi.dir/ligand/ideal-rna.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT 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-I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o -MF CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o.d -o CMakeFiles/cootapi.dir/ligand/smith-waterman.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/smith-waterman.cc +[ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -MF CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o.d -o CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rigid-body.hh:25, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rigid-body.cc:23: @@ -24494,11 +24532,21 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.hh:25, + from /build/reproducible-path/coot-1.1.09+dfsg/ligand/wiggly-ligand.cc:26: +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': +/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 209 | std::pair weight_abscissa(int idx) { + | ^ +[ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -MF CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o.d -o CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/fast-ss-search.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/side-chain.cc:28: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/rotamer.cc.o In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/residue_by_phi_psi.hh:37, @@ -24507,17 +24555,12 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:162, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/regularize-minimol.hh:25, - from /build/reproducible-path/coot-1.1.09+dfsg/ligand/wiggly-ligand.cc:26: -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': -/build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 209 | std::pair weight_abscissa(int idx) { - | ^ -[ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -MF CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o.d -o CMakeFiles/cootapi.dir/ligand/tube-finder.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc -[ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -MF CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o.d -o CMakeFiles/cootapi.dir/ligand/fast-ss-search.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/fast-ss-search.cc +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc:30: +/build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': +/build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 139 | std::pair median_and_iqr() const { + | ^ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { @@ -24527,23 +24570,6 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc:30: -/build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh: In member function 'std::pair coot::stats::single::median_and_iqr() const': -/build/reproducible-path/coot-1.1.09+dfsg/analysis/stats.hh:139:59: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 139 | std::pair median_and_iqr() const { - | ^ -[ 94%] Building CXX object CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -MF CMakeFiles/cootapi.dir/ligand/rotamer.cc.o.d -o CMakeFiles/cootapi.dir/ligand/rotamer.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer.cc -[ 95%] Building CXX object CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -MF CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o.d -o CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/src/coot-nomenclature.cc -[ 95%] Building CXX object CMakeFiles/cootapi.dir/db-main/db-main.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/db-main/db-main.cc.o -MF CMakeFiles/cootapi.dir/db-main/db-main.cc.o.d -o CMakeFiles/cootapi.dir/db-main/db-main.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-main.cc -[ 95%] Building CXX object CMakeFiles/cootapi.dir/compat/getopt.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/compat/getopt.cc.o -MF CMakeFiles/cootapi.dir/compat/getopt.cc.o.d -o CMakeFiles/cootapi.dir/compat/getopt.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/compat/getopt.cc -/build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc: In constructor 'coot::tube_finder_t::tube_finder_t(const clipper::Xmap&)': -/build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc:45:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 45 | std::pair mv = util::mean_and_variance(blurred_xmap); - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol-utils.hh:22, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/fast-ss-search.cc:43: @@ -24551,26 +24577,36 @@ /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 95%] Building CXX object CMakeFiles/cootapi.dir/compat/getopt1.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -MF CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o.d -o CMakeFiles/cootapi.dir/src/coot-nomenclature.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/src/coot-nomenclature.cc +/build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc: In constructor 'coot::tube_finder_t::tube_finder_t(const clipper::Xmap&)': +/build/reproducible-path/coot-1.1.09+dfsg/ligand/tube-finder.cc:45:69: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 45 | std::pair mv = util::mean_and_variance(blurred_xmap); + | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer.cc:33: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ -[ 96%] Building CXX object CMakeFiles/cootapi.dir/src/gl-matrix.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/src/gl-matrix.cc.o -MF CMakeFiles/cootapi.dir/src/gl-matrix.cc.o.d -o CMakeFiles/cootapi.dir/src/gl-matrix.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/src/gl-matrix.cc -[ 96%] Building CXX object CMakeFiles/cootapi.dir/ideal/write-png.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD 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/build/reproducible-path/coot-1.1.09+dfsg/ligand/rotamer.cc:33: +[ 95%] Building CXX object CMakeFiles/cootapi.dir/db-main/db-main.cc.o +/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -Dcootapi_EXPORTS -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/cootapi.dir/compat/getopt.cc.o -MF CMakeFiles/cootapi.dir/compat/getopt.cc.o.d -o CMakeFiles/cootapi.dir/compat/getopt.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/compat/getopt.cc +In file included from /build/reproducible-path/coot-1.1.09+dfsg/db-main/db-main.cc:35: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +[ 95%] Building CXX object 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CMakeFiles/findligand.dir/build.make CMakeFiles/findligand.dir/build -make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/chapi.dir/build.make CMakeFiles/chapi.dir/build -make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' +make -f CMakeFiles/findwaters.dir/build.make CMakeFiles/findwaters.dir/build make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' +make -f CMakeFiles/coot-mini-rsr.dir/build.make CMakeFiles/coot-mini-rsr.dir/build make -f 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-I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o -MF CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o.d -o CMakeFiles/chapi.dir/api/molecules-container-nanobind.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-nanobind.cc make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' +[ 97%] Building CXX object CMakeFiles/findligand.dir/ligand/find-ligand.cc.o +/usr/bin/c++ 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CXX object CMakeFiles/test-molecules-container.dir/api/filo-tests.cc.o [ 98%] Building CXX object CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/findwaters.dir/ligand/find-waters.cc.o -MF CMakeFiles/findwaters.dir/ligand/find-waters.cc.o.d -o CMakeFiles/findwaters.dir/ligand/find-waters.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/ligand/find-waters.cc -/usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 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-DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o -MF CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/test-molecules-container.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/test-molecules-container.cc /usr/bin/c++ -DANALYSE_REFINEMENT_TIMING -DCLIPPER_HAS_TOP8000 -DHAVE_BOOST -DHAVE_BOOST_THREAD -DHAVE_CXX_THREAD -DHAVE_GSL -DHAVE_SSMLIB -DPACKAGE_VERSION=\"1\" -DPKGDATADIR=\"/usr/share/coot\" -DUSE_GEMMI -DUSE_LIBPNG=1 -DXDATADIR=\"/usr/share\" -I/build/reproducible-path/coot-1.1.09+dfsg -I/build/reproducible-path/coot-1.1.09+dfsg/coords -I/build/reproducible-path/coot-1.1.09+dfsg/utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/util -I/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils/pygl -I/usr/include/include -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -MD -MT CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o -MF CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o.d -o CMakeFiles/test-molecules-container.dir/api/lucrezia-tests.cc.o -c /build/reproducible-path/coot-1.1.09+dfsg/api/lucrezia-tests.cc In file included from /build/reproducible-path/coot-1.1.09+dfsg/mini-mol/mini-mol.hh:29, from /build/reproducible-path/coot-1.1.09+dfsg/ligand/ligand.hh:32, @@ -24679,7 +24715,8 @@ from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, - from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-nanobind.cc:9: + from /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.hh:23, + from /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.cc:22: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { @@ -24688,12 +24725,32 @@ from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/atom-tree.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:42, from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container.hh:19, - from /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.hh:23, - from /build/reproducible-path/coot-1.1.09+dfsg/api/filo-tests.cc:22: + from /build/reproducible-path/coot-1.1.09+dfsg/api/molecules-container-nanobind.cc:9: /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh: In member function 'std::pair coot::gauss_legendre_t::weight_abscissa(int)': /build/reproducible-path/coot-1.1.09+dfsg/utils/coot-utils.hh:209:57: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 209 | std::pair weight_abscissa(int idx) { | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:174, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:60: +/build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { + | ^ +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, + from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:66: +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': +/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 63 | std::pair mean_and_variance() const { + | ^ +In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': +/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2612 | const double &phir, const double &psir) const { + | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 @@ -24713,33 +24770,20 @@ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:174, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:60: -/build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh: In member function 'std::pair zo::rama_coeffs::df(const zo::realtype&, const zo::realtype&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/zo-rama.hh:85:98: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 85 | std::pair df(const realtype &rama_phi, const realtype &rama_psi) const { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:47: -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh: In member function 'std::pair coot::restraints_container_t::zo_rama_grad(const std::string&, const double&, const double&) const': -/build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2612 | const double &phir, const double &psir) const { - | ^ In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/ideal/mini-rsr.cc:66: + from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ +[ 98%] Linking CXX executable findwaters +/usr/bin/cmake -E cmake_link_script CMakeFiles/findwaters.dir/link.txt --verbose=1 In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': @@ -24751,23 +24795,15 @@ /build/reproducible-path/coot-1.1.09+dfsg/ideal/simple-restraint.hh:2612:90: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 2612 | const double &phir, const double &psir) const { | ^ +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/findwaters.dir/link.d "CMakeFiles/findwaters.dir/ligand/find-waters.cc.o" -o findwaters -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so +make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' +[ 98%] Built target findwaters In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 63 | std::pair mean_and_variance() const { | ^ -In file included from /build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-map-utils.hh:33, - from /build/reproducible-path/coot-1.1.09+dfsg/api/coot-molecule.hh:75: -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh: In member function 'std::pair coot::util::density_stats_info_t::mean_and_variance() const': -/build/reproducible-path/coot-1.1.09+dfsg/coot-utils/coot-density-stats.hh:63:62: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 63 | std::pair mean_and_variance() const { - | ^ -[ 98%] Linking CXX executable findwaters -/usr/bin/cmake -E cmake_link_script CMakeFiles/findwaters.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/findwaters.dir/link.d "CMakeFiles/findwaters.dir/ligand/find-waters.cc.o" -o findwaters -Wl,-rpath,/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu libcootapi.so.1.1 /usr/lib/aarch64-linux-gnu/libclipper-core.so /usr/lib/aarch64-linux-gnu/libclipper-ccp4.so /usr/lib/aarch64-linux-gnu/libmmdb2.so -make[4]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/obj-aarch64-linux-gnu' -[ 98%] Built target findwaters In file included from /usr/include/clipper/core/container_hkl.h:50, from /usr/include/clipper/ccp4/ccp4_mtz_types.h:49, from /usr/include/clipper/ccp4/ccp4_mtz_io.h:49, @@ -24892,7 +24928,7 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-compat.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-compat.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-compat.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-compat.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-compat.so.0.0.0 libcoot-compat.so.0 || { rm -f libcoot-compat.so.0 && ln -s libcoot-compat.so.0.0.0 libcoot-compat.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-compat.so.0.0.0 libcoot-compat.so || { rm -f libcoot-compat.so && ln -s libcoot-compat.so.0.0.0 libcoot-compat.so; }; }) @@ -24906,7 +24942,7 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-utils.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-utils.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-utils.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-utils.so.0.0.0 libcoot-utils.so.0 || { rm -f libcoot-utils.so.0 && ln -s libcoot-utils.so.0.0.0 libcoot-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-utils.so.0.0.0 libcoot-utils.so || { rm -f libcoot-utils.so && ln -s libcoot-utils.so.0.0.0 libcoot-utils.so; }; }) @@ -24920,7 +24956,7 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-protein-db.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-protein-db.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-protein-db.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-protein-db.so.0.0.0 libcoot-protein-db.so.0 || { rm -f libcoot-protein-db.so.0 && ln -s libcoot-protein-db.so.0.0.0 libcoot-protein-db.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-protein-db.so.0.0.0 libcoot-protein-db.so || { rm -f libcoot-protein-db.so && ln -s libcoot-protein-db.so.0.0.0 libcoot-protein-db.so; }; }) @@ -24936,9 +24972,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-mini-mol.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-mini-mol.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-mini-mol.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/mini-mol; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/aarch64-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/mini-mol; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/aarch64-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-mini-mol.so.0 -o .libs/libcoot-mini-mol.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-mini-mol.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so.0 || { rm -f libcoot-mini-mol.so.0 && ln -s libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so.0; }; }) @@ -24953,9 +24989,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-geometry.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-geometry.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-geometry.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/geometry; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/aarch64-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/geometry; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/aarch64-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/cif-parse.o .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/mol-utils.o .libs/dictionary-residue.o .libs/link.o .libs/glyco-tools.o .libs/dict-utils.o .libs/chem_mods.o .libs/srs-interface.o .libs/protein-donor-acceptors.o .libs/lbg-graph.o .libs/dreiding.o .libs/main-chain.o .libs/residue-and-atom-specs.o .libs/intercept-3GP.o .libs/mol-utils-2.o .libs/hydrophobic.o .libs/cif-parse-link.o .libs/cif-parse-mon-lib.o .libs/read-metals-json.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-mini-mol -lcoot-utils -lcoot-compat -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-geometry.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-geometry.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-geometry.so.0.0.0 libcoot-geometry.so.0 || { rm -f libcoot-geometry.so.0 && ln -s libcoot-geometry.so.0.0.0 libcoot-geometry.so.0; }; }) @@ -24970,9 +25006,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-lidia-core.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-lidia-core.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-lidia-core.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/lidia-core; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/aarch64-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/lidia-core; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/aarch64-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lsqlite3 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/lbg-shared.o .libs/lbg-molfile.o .libs/lig-build.o .libs/rdkit-interface.o .libs/cod-types.o .libs/atom-types.o .libs/bond-record-container-t.o .libs/cod-atom-type-t.o .libs/cod-atom-types.o .libs/bond-table-record-t.o .libs/chemical-feature-clusters.o .libs/get-residue.o .libs/svg-molecule.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-utils -lcoot-mini-mol -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lsqlite3 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-lidia-core.so.0 -o .libs/libcoot-lidia-core.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-lidia-core.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so.0 || { rm -f libcoot-lidia-core.so.0 && ln -s libcoot-lidia-core.so.0.0.0 libcoot-lidia-core.so.0; }; }) @@ -24987,30 +25023,30 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-coord-utils.la libcoot-coord-extras.la libcoot-map-utils.la libcoot-map-heavy.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-coord-utils.la libcoot-coord-extras.la libcoot-map-utils.la libcoot-map-heavy.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-coord-utils.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo glyco-torsions.lo coot-least-squares.lo atom-overlaps.lo reduce.lo atom-selection-container.lo contact-info.lo coot-shelx-ins.lo secondary-structure-headers.lo plane-utils.lo c-beta-deviations.lo lidia-core-functions.lo atom-tools.lo bonded-atoms.lo bricks.lo helix-like.lo merge-atom-selections.lo contacts-by-bricks.lo stack-and-pair.lo fast-eigens.lo strand-fragments.lo sfcalc-genmap.lo cablam-markup.lo coot_shiftfield.lo shiftfield.lo fib-sphere.lo polar-atoms.lo 3d-texture.lo merge-molecules.lo fragment-container.lo mutate.lo merge-C-and-N-terminii.lo cylinder.lo cylinder-with-rotation-translation.lo oct.lo prideout-octasphere.lo simple-mesh.lo shapes.lo cmtz-interface.lo pugixml.lo parse-pisa.lo gltf-export.lo pae.lo ../lidia-core/libcoot-lidia-core.la ../protein_db/libcoot-protein-db.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo glyco-torsions.lo coot-least-squares.lo atom-overlaps.lo reduce.lo atom-selection-container.lo contact-info.lo coot-shelx-ins.lo secondary-structure-headers.lo plane-utils.lo c-beta-deviations.lo lidia-core-functions.lo atom-tools.lo bonded-atoms.lo bricks.lo helix-like.lo merge-atom-selections.lo contacts-by-bricks.lo stack-and-pair.lo fast-eigens.lo strand-fragments.lo sfcalc-genmap.lo cablam-markup.lo coot_shiftfield.lo shiftfield.lo fib-sphere.lo polar-atoms.lo 3d-texture.lo merge-molecules.lo fragment-container.lo mutate.lo merge-C-and-N-terminii.lo cylinder.lo cylinder-with-rotation-translation.lo oct.lo prideout-octasphere.lo simple-mesh.lo shapes.lo cmtz-interface.lo pugixml.lo parse-pisa.lo gltf-export.lo pae.lo ../lidia-core/libcoot-lidia-core.la ../protein_db/libcoot-protein-db.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -L/usr/lib/aarch64-linux-gnu -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-utils.o .libs/coot-coord-utils-nucleotides.o .libs/coot-rama.o .libs/coot-h-bonds.o .libs/hole.o .libs/read-sm-cif.o .libs/bonded-pairs.o .libs/helix-analysis.o .libs/elastic.o .libs/glyco-torsions.o .libs/coot-least-squares.o .libs/atom-overlaps.o .libs/reduce.o .libs/atom-selection-container.o .libs/contact-info.o .libs/coot-shelx-ins.o .libs/secondary-structure-headers.o .libs/plane-utils.o .libs/c-beta-deviations.o .libs/lidia-core-functions.o .libs/atom-tools.o .libs/bonded-atoms.o .libs/bricks.o .libs/helix-like.o .libs/merge-atom-selections.o .libs/contacts-by-bricks.o .libs/stack-and-pair.o .libs/fast-eigens.o .libs/strand-fragments.o .libs/sfcalc-genmap.o .libs/cablam-markup.o .libs/coot_shiftfield.o .libs/shiftfield.o .libs/fib-sphere.o .libs/polar-atoms.o .libs/3d-texture.o .libs/merge-molecules.o .libs/fragment-container.o .libs/mutate.o .libs/merge-C-and-N-terminii.o .libs/cylinder.o .libs/cylinder-with-rotation-translation.o .libs/oct.o .libs/prideout-octasphere.o .libs/simple-mesh.o .libs/shapes.o .libs/cmtz-interface.o .libs/pugixml.o .libs/parse-pisa.o .libs/gltf-export.o .libs/pae.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-lidia-core -lcoot-protein-db -lcoot-geometry -lcoot-utils -lcoot-mini-mol -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -L/usr/lib/aarch64-linux-gnu/lib -lgemmi_cpp -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcairo -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-utils.so.0 -o .libs/libcoot-coord-utils.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so.0 || { rm -f libcoot-coord-utils.so.0 && ln -s libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so || { rm -f libcoot-coord-utils.so && ln -s libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-utils.la libtool: warning: relinking 'libcoot-coord-extras.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-extras.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo jed-flip.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coord-extras.la -rpath /usr/lib/aarch64-linux-gnu coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo jed-flip.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-coord-extras.o .libs/coot-coord-lsq.o .libs/coot-tree-extras.o .libs/water-coordination.o .libs/lsq-improve.o .libs/coot-coord-utils-glyco.o .libs/jed-flip.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-coord-extras.so.0 -o .libs/libcoot-coord-extras.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-extras.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so.0 || { rm -f libcoot-coord-extras.so.0 && ln -s libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so || { rm -f libcoot-coord-extras.so && ln -s libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coord-extras.la libtool: warning: relinking 'libcoot-map-utils.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-map-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo pepflip-using-difference-map.lo exp-fit.lo blob-line.lo slurp-map.lo find-water-baddies.lo diff-diff-map-peaks.lo mini-texture.lo positron.lo texture-as-floats.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -lz -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-map-utils.la -rpath /usr/lib/aarch64-linux-gnu coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo pepflip-using-difference-map.lo exp-fit.lo blob-line.lo slurp-map.lo find-water-baddies.lo diff-diff-map-peaks.lo mini-texture.lo positron.lo texture-as-floats.lo libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -lz -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-utils.o .libs/peak-search.o .libs/peak-search-from-list.o .libs/trim.o .libs/xmap-stats.o .libs/maps-spherical.o .libs/pepflip-using-difference-map.o .libs/exp-fit.o .libs/blob-line.o .libs/slurp-map.o .libs/find-water-baddies.o .libs/diff-diff-map-peaks.o .libs/mini-texture.o .libs/positron.o .libs/texture-as-floats.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -lz -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-utils.so.0 -o .libs/libcoot-map-utils.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-utils.so.0.0.0 libcoot-map-utils.so.0 || { rm -f libcoot-map-utils.so.0 && ln -s libcoot-map-utils.so.0.0.0 libcoot-map-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-utils.so.0.0.0 libcoot-map-utils.so || { rm -f libcoot-map-utils.so && ln -s libcoot-map-utils.so.0.0.0 libcoot-map-utils.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-utils.la libtool: warning: relinking 'libcoot-map-heavy.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-map-heavy.la -rpath /usr/lib/aarch64-linux-gnu coot-map-heavy.lo coot-fffear.lo spherical-harmonics.lo segmap.lo libcoot-map-utils.la libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coot-utils; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-map-heavy.la -rpath /usr/lib/aarch64-linux-gnu coot-map-heavy.lo coot-fffear.lo spherical-harmonics.lo segmap.lo libcoot-map-utils.la libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-map-heavy.o .libs/coot-fffear.o .libs/spherical-harmonics.o .libs/segmap.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-utils -lcoot-coord-utils -lcoot-lidia-core -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-map-heavy.so.0 -o .libs/libcoot-map-heavy.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-heavy.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so.0 || { rm -f libcoot-map-heavy.so.0 && ln -s libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so.0; }; }) @@ -25018,7 +25054,7 @@ libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-map-heavy.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c coot-mmrrcc '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c coot-mmrrcc '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' libtool: warning: './libcoot-map-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: './libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' @@ -25035,7 +25071,7 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/angles' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-AngleInfo.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-AngleInfo.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-AngleInfo.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so.0 || { rm -f libcoot-AngleInfo.so.0 && ln -s libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so || { rm -f libcoot-AngleInfo.so && ln -s libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so; }; }) @@ -25049,7 +25085,7 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ccp4mg-utils' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libccp4mg-utils.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libccp4mg-utils.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4mg-utils.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4mg-utils.so.0.0.0 libccp4mg-utils.so.0 || { rm -f libccp4mg-utils.so.0 && ln -s libccp4mg-utils.so.0.0.0 libccp4mg-utils.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4mg-utils.so.0.0.0 libccp4mg-utils.so || { rm -f libccp4mg-utils.so && ln -s libccp4mg-utils.so.0.0.0 libccp4mg-utils.so; }; }) @@ -25063,9 +25099,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/db-main' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-db-main.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-db-main.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-db-main.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/db-main; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-db-main.la -rpath /usr/lib/aarch64-linux-gnu db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/db-main; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-db-main.la -rpath /usr/lib/aarch64-linux-gnu db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/db-main.o .libs/db-strands.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-mini-mol -lcoot-lidia-core -lcoot-coord-utils -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-db-main.so.0 -o .libs/libcoot-db-main.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-db-main.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-db-main.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-db-main.so.0.0.0 libcoot-db-main.so.0 || { rm -f libcoot-db-main.so.0 && ln -s libcoot-db-main.so.0.0.0 libcoot-db-main.so.0; }; }) @@ -25080,9 +25116,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/analysis' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-analysis.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-analysis.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-analysis.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/analysis; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-analysis.la -rpath /usr/lib/aarch64-linux-gnu bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo b-factor-histogram.lo daca.lo rna-backbone.lo ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/analysis; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-analysis.la -rpath /usr/lib/aarch64-linux-gnu bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo b-factor-histogram.lo daca.lo rna-backbone.lo ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/bfkurt.o .libs/mogul.o .libs/kolmogorov.o .libs/stats.o .libs/cablam.o .libs/typed-distances.o .libs/b-factor-histogram.o .libs/daca.o .libs/rna-backbone.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-utils -lcoot-coord-utils -lcoot-lidia-core -lcoot-geometry -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-analysis.so.0 -o .libs/libcoot-analysis.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-analysis.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-analysis.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-analysis.so.0.0.0 libcoot-analysis.so.0 || { rm -f libcoot-analysis.so.0 && ln -s libcoot-analysis.so.0.0.0 libcoot-analysis.so.0; }; }) @@ -25090,7 +25126,7 @@ libtool: install: /usr/bin/install -c .libs/libcoot-analysis.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-analysis.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c coot-bfactan '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c coot-bfactan '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' libtool: warning: 'libcoot-analysis.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-coord-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../lidia-core/libcoot-lidia-core.la' has not been installed in '/usr/lib/aarch64-linux-gnu' @@ -25106,7 +25142,7 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootaneer' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcootaneer.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcootaneer.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcootaneer.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootaneer.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootaneer.so.0.0.0 libcootaneer.so.0 || { rm -f libcootaneer.so.0 && ln -s libcootaneer.so.0.0.0 libcootaneer.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootaneer.so.0.0.0 libcootaneer.so || { rm -f libcootaneer.so && ln -s libcootaneer.so.0.0.0 libcootaneer.so; }; }) @@ -25120,9 +25156,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ideal' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-ideal.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-ideal.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-ideal.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ideal; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-ideal.la -rpath /usr/lib/aarch64-linux-gnu simple-restraint.lo make-restraints.lo ng.lo chi-squareds.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo process-dfs-in-range.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo pull-restraint.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo neutron.lo ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpng16 -lm -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ideal; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG=1 -I/usr/include/libpng16 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -lpthread -Wl,-z,relro -o libcoot-ideal.la -rpath /usr/lib/aarch64-linux-gnu simple-restraint.lo make-restraints.lo ng.lo chi-squareds.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo process-dfs-in-range.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo pull-restraint.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo neutron.lo ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lmmdb2 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lm -lpng16 -lm -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/simple-restraint.o .libs/make-restraints.o .libs/ng.o .libs/chi-squareds.o .libs/mods.o .libs/distortion.o .libs/chirals.o .libs/flanking.o .libs/gradients.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/process-dfs-in-range.o .libs/extra-restraints-kk.o .libs/simple-restraint-kk.o .libs/torsion-bonds.o .libs/coot-compare-residues.o .libs/link-restraints.o .libs/parallel-planes.o .libs/pull-restraint.o .libs/trans-peptide.o .libs/model-bond-deltas.o .libs/write-png.o .libs/zo-rama.o .libs/crankshaft.o .libs/phi-psi.o .libs/neutron.o -lpthread -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-map-heavy -lcoot-map-utils -lcoot-geometry -lcoot-coord-extras -lcoot-coord-utils -lcoot-mini-mol -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lpng16 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-ideal.so.0 -o .libs/libcoot-ideal.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-ideal.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ideal.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ideal.so.0.0.0 libcoot-ideal.so.0 || { rm -f libcoot-ideal.so.0 && ln -s libcoot-ideal.so.0.0.0 libcoot-ideal.so.0; }; }) @@ -25132,7 +25168,7 @@ /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c coot-mini-rsr coot-ligand-validation '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' - /bin/bash ../libtool --mode=install /usr/bin/install -c mini-rsr-bin coot-ligand-validation-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' + /bin/sh ../libtool --mode=install /usr/bin/install -c mini-rsr-bin coot-ligand-validation-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' libtool: warning: './libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../geometry/libcoot-geometry.la' has not been installed in '/usr/lib/aarch64-linux-gnu' @@ -25163,16 +25199,16 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/ligand' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-ligand.la libcoot-res-tracer.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-ligand.la libcoot-res-tracer.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-ligand.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ligand; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-ligand.la -rpath /usr/lib/aarch64-linux-gnu ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo joining-residues.lo ligand-score-card.lo side-chain-densities.lo tube-finder.lo smith-waterman.lo side-chain.lo refine-isolated-chain.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ligand; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-ligand.la -rpath /usr/lib/aarch64-linux-gnu ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo joining-residues.lo ligand-score-card.lo side-chain-densities.lo tube-finder.lo smith-waterman.lo side-chain.lo refine-isolated-chain.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/trace.o .libs/trace-2.o .libs/multi-peptide.o .libs/ligands-db.o .libs/joining-residues.o .libs/ligand-score-card.o .libs/side-chain-densities.o .libs/tube-finder.o .libs/smith-waterman.o .libs/side-chain.o .libs/refine-isolated-chain.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ideal -lcoot-map-heavy -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-analysis -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-ligand.so.0 -o .libs/libcoot-ligand.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-ligand.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ligand.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ligand.so.0.0.0 libcoot-ligand.so.0 || { rm -f libcoot-ligand.so.0 && ln -s libcoot-ligand.so.0.0.0 libcoot-ligand.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-ligand.so.0.0.0 libcoot-ligand.so || { rm -f libcoot-ligand.so && ln -s libcoot-ligand.so.0.0.0 libcoot-ligand.so; }; }) libtool: install: /usr/bin/install -c .libs/libcoot-ligand.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-ligand.la libtool: warning: relinking 'libcoot-res-tracer.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ligand; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-res-tracer.la -rpath /usr/lib/aarch64-linux-gnu libres-tracer.lo rama-rsr-extend-fragments.lo new-residue-by-3-phi-psi.lo dSFMT.lo libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/ligand; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -fopenmp -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-res-tracer.la -rpath /usr/lib/aarch64-linux-gnu libres-tracer.lo rama-rsr-extend-fragments.lo new-residue-by-3-phi-psi.lo dSFMT.lo libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libres-tracer.o .libs/rama-rsr-extend-fragments.o .libs/new-residue-by-3-phi-psi.o .libs/dSFMT.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ligand -lcoot-ideal -lcoot-map-utils -lcoot-coord-utils -lcoot-mini-mol -lcoot-geometry -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-res-tracer.so.0 -o .libs/libcoot-res-tracer.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-res-tracer.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-res-tracer.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so.0 || { rm -f libcoot-res-tracer.so.0 && ln -s libcoot-res-tracer.so.0.0.0 libcoot-res-tracer.so.0; }; }) @@ -25182,7 +25218,7 @@ /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c coot-findwaters coot-findligand coot-identify-protein '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' - /bin/bash ../libtool --mode=install /usr/bin/install -c coot-findligand-bin coot-findwaters-bin coot-make-ligands-db coot-identify-protein-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' + /bin/sh ../libtool --mode=install /usr/bin/install -c coot-findligand-bin coot-findwaters-bin coot-make-ligands-db coot-identify-protein-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' libtool: warning: './libcoot-ligand.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../ideal/libcoot-ideal.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../coot-utils/libcoot-map-heavy.la' has not been installed in '/usr/lib/aarch64-linux-gnu' @@ -25252,9 +25288,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coords' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-coords.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-coords.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-coords.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coords; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coords.la -rpath /usr/lib/aarch64-linux-gnu Bond_lines.lo Cartesian.lo cos-sin.lo phenix-geo-bonds.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo rotamer-markup.lo loop-path.lo rama-plot-phi-psi.lo phi-psi-prob.lo ramachandran-validation.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../cootaneer/libcootaneer.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/coords; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DXDATADIR=\"/usr/share\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-coords.la -rpath /usr/lib/aarch64-linux-gnu Bond_lines.lo Cartesian.lo cos-sin.lo phenix-geo-bonds.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo rotamer-markup.lo loop-path.lo rama-plot-phi-psi.lo phi-psi-prob.lo ramachandran-validation.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-coord-extras.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../cootaneer/libcootaneer.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/phenix-geo-bonds.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/phenix-geo.o .libs/rotamer-markup.o .libs/loop-path.o .libs/rama-plot-phi-psi.o .libs/phi-psi-prob.o .libs/ramachandran-validation.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ligand -lcoot-coord-utils -lcoot-coord-extras -lcoot-geometry -lcoot-mini-mol -lcootaneer -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-coords.so.0 -o .libs/libcoot-coords.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-coords.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-coords.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-coords.so.0.0.0 libcoot-coords.so.0 || { rm -f libcoot-coords.so.0 && ln -s libcoot-coords.so.0.0.0 libcoot-coords.so.0; }; }) @@ -25269,9 +25305,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/density-contour' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-isosurface.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-isosurface.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-isosurface.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/density-contour; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-isosurface.la -rpath /usr/lib/aarch64-linux-gnu Vectors.lo CIsoSurface.lo density-contour-triangles.lo occlusion.lo gaussian-surface.lo ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/density-contour; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-isosurface.la -rpath /usr/lib/aarch64-linux-gnu Vectors.lo CIsoSurface.lo density-contour-triangles.lo occlusion.lo gaussian-surface.lo ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o .libs/occlusion.o .libs/gaussian-surface.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coords -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-isosurface.so.0 -o .libs/libcoot-isosurface.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-isosurface.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-isosurface.so.0.0.0 libcoot-isosurface.so.0 || { rm -f libcoot-isosurface.so.0 && ln -s libcoot-isosurface.so.0.0.0 libcoot-isosurface.so.0; }; }) @@ -25286,9 +25322,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/skeleton' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-skeleton.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-skeleton.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-skeleton.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/skeleton; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-skeleton.la -rpath /usr/lib/aarch64-linux-gnu dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/skeleton; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-skeleton.la -rpath /usr/lib/aarch64-linux-gnu dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-AngleInfo -lcoot-ideal -lcoot-geometry -lcoot-coords -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-skeleton.so.0 -o .libs/libcoot-skeleton.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-skeleton.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-skeleton.so.0.0.0 libcoot-skeleton.so.0 || { rm -f libcoot-skeleton.so.0 && ln -s libcoot-skeleton.so.0.0.0 libcoot-skeleton.so.0; }; }) @@ -25303,9 +25339,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/high-res' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-high-res.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-high-res.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-high-res.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/high-res; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-high-res.la -rpath /usr/lib/aarch64-linux-gnu high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/high-res; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-high-res.la -rpath /usr/lib/aarch64-linux-gnu high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-coords -lcoot-ligand -lcoot-map-utils -lcoot-lidia-core -lcoot-mini-mol -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-high-res.so.0 -o .libs/libcoot-high-res.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-high-res.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-high-res.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-high-res.so.0.0.0 libcoot-high-res.so.0 || { rm -f libcoot-high-res.so.0 && ln -s libcoot-high-res.so.0.0.0 libcoot-high-res.so.0; }; }) @@ -25320,9 +25356,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/build' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/build' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-cabuild.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-cabuild.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-cabuild.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/build; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-cabuild.la -rpath /usr/lib/aarch64-linux-gnu CalphaBuild.lo ../angles/libcoot-AngleInfo.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/build; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-cabuild.la -rpath /usr/lib/aarch64-linux-gnu CalphaBuild.lo ../angles/libcoot-AngleInfo.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/CalphaBuild.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-AngleInfo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-cabuild.so.0 -o .libs/libcoot-cabuild.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-cabuild.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-cabuild.so.0.0.0 libcoot-cabuild.so.0 || { rm -f libcoot-cabuild.so.0 && ln -s libcoot-cabuild.so.0.0.0 libcoot-cabuild.so.0; }; }) @@ -25339,7 +25375,7 @@ make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXSurface' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libMoleculesToTrianglesCXXSurface.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libMoleculesToTrianglesCXXSurface.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXSurface.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXSurface.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so.0 || { rm -f libMoleculesToTrianglesCXXSurface.so.0 && ln -s libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so || { rm -f libMoleculesToTrianglesCXXSurface.so && ln -s libMoleculesToTrianglesCXXSurface.so.0.0.0 libMoleculesToTrianglesCXXSurface.so; }; }) @@ -25353,9 +25389,9 @@ make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libMoleculesToTrianglesCXXClasses.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libMoleculesToTrianglesCXXClasses.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libMoleculesToTrianglesCXXClasses.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libMoleculesToTrianglesCXXClasses.la -rpath /usr/lib/aarch64-linux-gnu libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-Representation.lo libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo libMoleculesToTrianglesCXXClasses_la-Light.lo libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo libMoleculesToTrianglesCXXClasses_la-ColorRule.lo libMoleculesToTrianglesCXXClasses_la-NRStuff.lo libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo libMoleculesToTrianglesCXXClasses_la-Renderer.lo libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-Quaternion.lo libMoleculesToTrianglesCXXClasses_la-Vector2.lo libMoleculesToTrianglesCXXClasses_la-Vector3.lo libMoleculesToTrianglesCXXClasses_la-lfit.lo libMoleculesToTrianglesCXXClasses_la-DishyBase.lo libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo ../../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/MoleculesToTriangles/CXXClasses; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libMoleculesToTrianglesCXXClasses.la -rpath /usr/lib/aarch64-linux-gnu libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.lo libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-Representation.lo libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.lo libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.lo libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.lo libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.lo libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.lo libMoleculesToTrianglesCXXClasses_la-Light.lo libMoleculesToTrianglesCXXClasses_la-CXXMatrix.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.lo libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.lo libMoleculesToTrianglesCXXClasses_la-MyMolecule.lo libMoleculesToTrianglesCXXClasses_la-SolidColorRule.lo libMoleculesToTrianglesCXXClasses_la-ColorRule.lo libMoleculesToTrianglesCXXClasses_la-NRStuff.lo libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.lo libMoleculesToTrianglesCXXClasses_la-ColorScheme.lo libMoleculesToTrianglesCXXClasses_la-Polyhedron.lo libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CompoundSelection.lo libMoleculesToTrianglesCXXClasses_la-PositionedEntity.lo libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylinderPoint.lo libMoleculesToTrianglesCXXClasses_la-Renderer.lo libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.lo libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.lo libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.lo libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.lo libMoleculesToTrianglesCXXClasses_la-Quaternion.lo libMoleculesToTrianglesCXXClasses_la-Vector2.lo libMoleculesToTrianglesCXXClasses_la-Vector3.lo libMoleculesToTrianglesCXXClasses_la-lfit.lo libMoleculesToTrianglesCXXClasses_la-DishyBase.lo libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.lo ../../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/libMoleculesToTrianglesCXXClasses_la-AtomPropertyRampColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-DirectedPositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-Representation.o .libs/libMoleculesToTrianglesCXXClasses_la-BallsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DiscreteSegment.o .libs/libMoleculesToTrianglesCXXClasses_la-RepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-BondsPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-DisplayPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-RotatedTranslatedScaledEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-BoxSectionPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-Light.o .libs/libMoleculesToTrianglesCXXClasses_la-CXXMatrix.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentation.o .libs/libMoleculesToTrianglesCXXClasses_la-SecondaryColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-MyMolecule.o .libs/libMoleculesToTrianglesCXXClasses_la-SolidColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorRule.o .libs/libMoleculesToTrianglesCXXClasses_la-NRStuff.o .libs/libMoleculesToTrianglesCXXClasses_la-SpherePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-ColorScheme.o .libs/libMoleculesToTrianglesCXXClasses_la-Polyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-SticksPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CompoundSelection.o .libs/libMoleculesToTrianglesCXXClasses_la-PositionedEntity.o .libs/libMoleculesToTrianglesCXXClasses_la-SurfacePrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylinderPoint.o .libs/libMoleculesToTrianglesCXXClasses_la-Renderer.o .libs/libMoleculesToTrianglesCXXClasses_la-VertexColorNormalPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-CylindersPrimitive.o .libs/libMoleculesToTrianglesCXXClasses_la-oglPolyhedron.o .libs/libMoleculesToTrianglesCXXClasses_la-MolecularRepresentationInstance.o .libs/libMoleculesToTrianglesCXXClasses_la-Quaternion.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector2.o .libs/libMoleculesToTrianglesCXXClasses_la-Vector3.o .libs/libMoleculesToTrianglesCXXClasses_la-lfit.o .libs/libMoleculesToTrianglesCXXClasses_la-DishyBase.o .libs/libMoleculesToTrianglesCXXClasses_la-FlatFanPrimitive.o -L/usr/lib/aarch64-linux-gnu -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -lMoleculesToTrianglesCXXSurface -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libMoleculesToTrianglesCXXClasses.so.0 -o .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libMoleculesToTrianglesCXXClasses.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libMoleculesToTrianglesCXXClasses.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so.0 || { rm -f libMoleculesToTrianglesCXXClasses.so.0 && ln -s libMoleculesToTrianglesCXXClasses.so.0.0.0 libMoleculesToTrianglesCXXClasses.so.0; }; }) @@ -25380,9 +25416,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pli' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-pli.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-pli.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-pli.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pli; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-pli.la -rpath /usr/lib/aarch64-linux-gnu protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo sdf-interface.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pli; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-pli.la -rpath /usr/lib/aarch64-linux-gnu protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo sdf-interface.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/protein-ligand-interactions.o .libs/flev-annotations.o .libs/pi-stacking.o .libs/sdf-interface.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-coord-utils -lcoot-geometry -lcoot-lidia-core -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-pli.so.0 -o .libs/libcoot-pli.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-pli.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-pli.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-pli.so.0.0.0 libcoot-pli.so.0 || { rm -f libcoot-pli.so.0 && ln -s libcoot-pli.so.0.0.0 libcoot-pli.so.0; }; }) @@ -25411,7 +25447,7 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/cootilus' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcootilus.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcootilus.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libcootilus.so.0.0.0 /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootilus.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootilus.so.0.0.0 libcootilus.so.0 || { rm -f libcootilus.so.0 && ln -s libcootilus.so.0.0.0 libcootilus.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootilus.so.0.0.0 libcootilus.so || { rm -f libcootilus.so && ln -s libcootilus.so.0.0.0 libcootilus.so; }; }) @@ -25427,9 +25463,9 @@ /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c pyrogen '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot_py_restraints.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot_py_restraints.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot_py_restraints.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot_py_restraints.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0 || { rm -f libcoot_py_restraints.so.0 && ln -s libcoot_py_restraints.so.0.0.0 libcoot_py_restraints.so.0; }; }) @@ -25437,16 +25473,16 @@ libtool: install: /usr/bin/install -c .libs/libcoot_py_restraints.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot_py_restraints.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' - /bin/bash ../libtool --mode=install /usr/bin/install -c _pyrogen_swig.la pyrogen_boost.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' + /bin/sh ../libtool --mode=install /usr/bin/install -c _pyrogen_swig.la pyrogen_boost.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_pyrogen_swig.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/pyrogen-swig.o .libs/restraints.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-ideal -lcoot-coord-utils -lcoot-lidia-core -lcoot-analysis -lcoot-geometry -lcoot-utils -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,_pyrogen_swig.so.0 -o .libs/_pyrogen_swig.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_pyrogen_swig.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0 || { rm -f _pyrogen_swig.so.0 && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so.0; }; }) libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _pyrogen_swig.so.0.0.0 _pyrogen_swig.so || { rm -f _pyrogen_swig.so && ln -s _pyrogen_swig.so.0.0.0 _pyrogen_swig.so; }; }) libtool: install: /usr/bin/install -c .libs/_pyrogen_swig.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.la libtool: warning: relinking 'pyrogen_boost.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/restraints-boost.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-pli -lcoot-ideal -lcoot-coord-utils -lcoot-geometry -lcoot-coords -lcoot-lidia-core -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,pyrogen_boost.so.0 -o .libs/pyrogen_boost.so.0.0.0 libtool: install: /usr/bin/install -c .libs/pyrogen_boost.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f pyrogen_boost.so.0.0.0 pyrogen_boost.so.0 || { rm -f pyrogen_boost.so.0 && ln -s pyrogen_boost.so.0.0.0 pyrogen_boost.so.0; }; }) @@ -25601,9 +25637,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/api' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/api' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-api.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-api.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-api.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/api; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../ligand/libcoot-ligand.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../analysis/libcoot-analysis.la ../density-contour/libcoot-isosurface.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -Wl,-z,relro -o libcoot-api.la -rpath /usr/lib/aarch64-linux-gnu coot-molecule.lo coot-colour.lo add-terminal-residue.lo rama-plot-phi-psi.lo colour-functions.lo coot-molecule-maps.lo coot-molecule-merge-molecules.lo coot-molecule-bonds.lo coot-molecule-validation.lo molecules-container-modelling.lo molecules-container.lo make-a-dodec.lo molecules-container-ligand-fitting.lo phi-psi-prob.lo coot-molecule-moltris.lo coot-molecule-replace-fragment.lo coot-molecule-backup.lo coot-molecule-bonds-instanced.lo molecules-container-mmrrcc.lo molecules-container-gltf.lo coot-molecule-refine.lo molecules-container-superpose.lo rigid-body-fit.lo moorhen-h-bonds.lo molecules-container-bucca-ml-growing.lo instancing.lo molecules-container-maps.lo coot-molecule-change-chain-id.lo blender-mesh.lo coot-molecule-blender.lo molecules-container-blender.lo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/api; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../ligand/libcoot-ligand.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../analysis/libcoot-analysis.la ../density-contour/libcoot-isosurface.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -lsqlite3 -lgsl -lgslcblas -lm -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -Wl,-z,relro -o libcoot-api.la -rpath /usr/lib/aarch64-linux-gnu coot-molecule.lo coot-colour.lo add-terminal-residue.lo rama-plot-phi-psi.lo colour-functions.lo coot-molecule-maps.lo coot-molecule-merge-molecules.lo coot-molecule-bonds.lo coot-molecule-validation.lo molecules-container-modelling.lo molecules-container.lo make-a-dodec.lo molecules-container-ligand-fitting.lo phi-psi-prob.lo coot-molecule-moltris.lo coot-molecule-replace-fragment.lo coot-molecule-backup.lo coot-molecule-bonds-instanced.lo molecules-container-mmrrcc.lo molecules-container-gltf.lo coot-molecule-refine.lo molecules-container-superpose.lo rigid-body-fit.lo moorhen-h-bonds.lo molecules-container-bucca-ml-growing.lo instancing.lo molecules-container-maps.lo coot-molecule-change-chain-id.lo blender-mesh.lo coot-molecule-blender.lo molecules-container-blender.lo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot-molecule.o .libs/coot-colour.o .libs/add-terminal-residue.o .libs/rama-plot-phi-psi.o .libs/colour-functions.o .libs/coot-molecule-maps.o .libs/coot-molecule-merge-molecules.o .libs/coot-molecule-bonds.o .libs/coot-molecule-validation.o .libs/molecules-container-modelling.o .libs/molecules-container.o .libs/make-a-dodec.o .libs/molecules-container-ligand-fitting.o .libs/phi-psi-prob.o .libs/coot-molecule-moltris.o .libs/coot-molecule-replace-fragment.o .libs/coot-molecule-backup.o .libs/coot-molecule-bonds-instanced.o .libs/molecules-container-mmrrcc.o .libs/molecules-container-gltf.o .libs/coot-molecule-refine.o .libs/molecules-container-superpose.o .libs/rigid-body-fit.o .libs/moorhen-h-bonds.o .libs/molecules-container-bucca-ml-growing.o .libs/instancing.o .libs/molecules-container-maps.o .libs/coot-molecule-change-chain-id.o .libs/blender-mesh.o .libs/coot-molecule-blender.o .libs/molecules-container-blender.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lMoleculesToTrianglesCXXClasses -lMoleculesToTrianglesCXXSurface -lcoot-ligand -lcoot-pli -lcoot-ideal -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-analysis -lcoot-isosurface -lcoot-map-heavy -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coords -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lsqlite3 -lgsl -lgslcblas -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,libcoot-api.so.0 -o .libs/libcoot-api.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-api.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-api.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-api.so.0.0.0 libcoot-api.so.0 || { rm -f libcoot-api.so.0 && ln -s libcoot-api.so.0.0.0 libcoot-api.so.0; }; }) @@ -25611,9 +25647,9 @@ libtool: install: /usr/bin/install -c .libs/libcoot-api.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-api.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' - /bin/bash ../libtool --mode=install /usr/bin/install -c _coot_headless_api.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' + /bin/sh ../libtool --mode=install /usr/bin/install -c _coot_headless_api.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_coot_headless_api.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/api; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined -Wl,-z,relro -o _coot_headless_api.la -rpath /usr/lib/python3/dist-packages _coot_headless_api_la-wrap-coot-api.lo _coot_headless_api_la-molecules-container-swig.lo libcoot-api.la -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/api; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_PYTHON -DSWIG -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined -Wl,-z,relro -o _coot_headless_api.la -rpath /usr/lib/python3/dist-packages _coot_headless_api_la-wrap-coot-api.lo _coot_headless_api_la-molecules-container-swig.lo libcoot-api.la -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/_coot_headless_api_la-wrap-coot-api.o .libs/_coot_headless_api_la-molecules-container-swig.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-api -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot_headless_api.so.0 -o .libs/_coot_headless_api.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_coot_headless_api.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot_headless_api.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot_headless_api.so.0.0.0 _coot_headless_api.so.0 || { rm -f _coot_headless_api.so.0 && ln -s _coot_headless_api.so.0.0.0 _coot_headless_api.so.0; }; }) @@ -25634,9 +25670,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/layla' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-layla.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-layla.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-layla.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/layla; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-layla.la -rpath /usr/lib/aarch64-linux-gnu layla_embedded.lo generators.lo notifier.lo signals.lo state.lo ui.lo utils.lo ligand_editor_canvas/core.lo ligand_editor_canvas.lo ligand_editor_canvas/model.lo ligand_editor_canvas/tools.lo ligand_editor_canvas/render.lo python_utils.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/layla; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -DUSE_SQLITE3 -lcurl -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-layla.la -rpath /usr/lib/aarch64-linux-gnu layla_embedded.lo generators.lo notifier.lo signals.lo state.lo ui.lo utils.lo ligand_editor_canvas/core.lo ligand_editor_canvas.lo ligand_editor_canvas/model.lo ligand_editor_canvas/tools.lo ligand_editor_canvas/render.lo python_utils.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/layla_embedded.o .libs/generators.o .libs/notifier.o .libs/signals.o .libs/state.o .libs/ui.o .libs/utils.o ligand_editor_canvas/.libs/core.o .libs/ligand_editor_canvas.o ligand_editor_canvas/.libs/model.o ligand_editor_canvas/.libs/tools.o ligand_editor_canvas/.libs/render.o .libs/python_utils.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lcurl -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-layla.so.0 -o .libs/libcoot-layla.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-layla.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-layla.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-layla.so.0.0.0 libcoot-layla.so.0 || { rm -f libcoot-layla.so.0 && ln -s libcoot-layla.so.0.0.0 libcoot-layla.so.0; }; }) @@ -25644,7 +25680,7 @@ libtool: install: /usr/bin/install -c .libs/libcoot-layla.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-layla.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c layla '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c layla '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' libtool: warning: 'libcoot-layla.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../utils/libcoot-utils.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/layla /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin/layla @@ -25658,9 +25694,9 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/validation-graphs' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-validation-graphs.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-validation-graphs.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcoot-validation-graphs.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/validation-graphs; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-validation-graphs.la -rpath /usr/lib/aarch64-linux-gnu residue-validation-information.lo validation-graph-widget.lo validation-graphs.lo validation-information.lo sequence-view-widget.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/validation-graphs; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-validation-graphs.la -rpath /usr/lib/aarch64-linux-gnu residue-validation-information.lo validation-graph-widget.lo validation-graphs.lo validation-information.lo sequence-view-widget.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../lidia-core/libcoot-lidia-core.la ../cootaneer/libcootaneer.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/residue-validation-information.o .libs/validation-graph-widget.o .libs/validation-graphs.o .libs/validation-information.o .libs/sequence-view-widget.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-ideal -lcoot-map-heavy -lcoot-lidia-core -lcootaneer -lcoot-db-main -lccp4mg-utils -lcoot-geometry -lcoot-mini-mol -lcoot-coord-extras -lcoot-coord-utils -lcoot-map-utils -lcoot-analysis -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lsqlite3 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-validation-graphs.so.0 -o .libs/libcoot-validation-graphs.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcoot-validation-graphs.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcoot-validation-graphs.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so.0 || { rm -f libcoot-validation-graphs.so.0 && ln -s libcoot-validation-graphs.so.0.0.0 libcoot-validation-graphs.so.0; }; }) @@ -25677,9 +25713,9 @@ make[4]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' make[5]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/src' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libcootsumo.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libcootsumo.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libcootsumo.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/src; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootsumo.la -rpath /usr/lib/aarch64-linux-gnu init_coot_as_python_module.lo boids.lo boot-python.lo atom-overlaps.lo git-revision-count.lo scm-boot-guile.lo c-interface-analysis.lo c-interface-bonds.lo c-interface-build.lo c-interface-build-morph.lo c-interface-build-main-chain.lo c-interface-build-side-chain.lo c-interface-build-symmetry.lo c-interface-build-gui.lo c-interface-curlew.lo c-interface-database.lo c-interface-gui.lo c-interface-gtk2.lo c-interface-info.lo c-interface-kk.lo c-interface-image.lo c-interface-ligands-gui.lo c-interface-ligands.lo c-interface-maps.lo c-interface-mmdb.lo c-interface-mogul.lo c-interface-mogul-scripting.lo c-interface-mutate.lo c-interface-ncs.lo c-interface-network.lo c-interface-nucleotides.lo c-interface-pisa.lo c-interface-pisa-gui.lo c-interface-preferences.lo c-interface-python.lo c-interface-refine.lo c-interface-residues.lo c-interface-refmac.lo simple-refmac.lo c-interface-scm.lo c-interface-sequence.lo c-interface-sfs.lo c-interface-sharpen.lo c-interface-superpose.lo c-interface-validate.lo c-interface-view.lo c-interface-widgets.lo c-interface-waters.lo c-interface-waters-gui.lo c-interface.lo c-interface-test.lo cc-interface-alignment.lo cc-interface-graphics.lo cc-interface-merge.lo cc-interface-molecular-representation.lo cc-interface-molecular-symmetry.lo cc-interface-scripting.lo cc-interface-map-utils.lo cc-interface-png.lo cc-interface-user-defined-atom-colours.lo cfc.lo change-dir.lo cmtz-interface.lo command-line.lo command-line-extern.lo coot-application.lo coot-colour.lo coot-align.lo coot-nomenclature.lo coot-glue-gtk2.lo coot-glue-gtk2-python.lo coot-hydrogens.lo coot-phi-psi.lo coot_pythonmodule.lo coot-setup-python.lo coot_wrap_guile.lo curlew-gtk4.lo draw.lo graphics-info-tick-function.lo drag-and-drop.lo draw-generic-display-objects.lo dynamic-validation.lo eyes.lo event-controller-callbacks.lo fit-loop-gui.lo flev.lo framebuffer.lo old-generic-display-object.lo gaussian-surface.lo generic-objects.lo geometry-graphs.lo get-residue.lo get-monomer.lo gl-rama-plot.lo globjects.lo globularize.lo graphics-info.lo graphics-info-defines.lo graphics-info-defines-gtk4.lo graphics-info-draw.lo graphics-info-draw-models.lo graphics-info-graphs.lo graphics-info-gui.lo graphics-info-init.lo graphics-info-intermediate.lo graphics-info-modelling.lo graphics-info-navigation.lo graphics-info-navigation-gtk2.lo graphics-info-preferences.lo graphics-info-network.lo graphics-info-mutate.lo graphics-info-lsq.lo graphics-info-opengl.lo graphics-info-pick.lo graphics-info-refmac.lo graphics-info-render.lo graphics-info-render-scene.lo graphics-info-residues.lo graphics-info-refine.lo graphics-info-scripting.lo graphics-info-state.lo graphics-info-statics.lo graphics-info-superpose.lo graphics-info-trackball.lo graphics-ligand-view.lo graphics-ligand-mesh-molecule.lo gl-matrix.lo gtkglarea-rama-plot.lo gtk-manual.lo gtk-widget-conversion-utils.lo gtk-utils.lo HUDMesh.lo HUDTextureMesh.lo Instanced-Markup-Mesh.lo init-from-gtkbuilder.lo key-bindings.lo LinesMesh.lo LigandViewMesh.lo lbg-callbacks-outer.lo lbg-interface.lo Model.lo make-a-dodec.lo matrix-utils.lo Mesh.lo Mesh-from-glTF.lo Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds.lo meshed-generic-display-object.lo model-molecule-meshes.lo molecule-class-info.lo molecule-class-info-alignment.lo molecule-class-info-analysis.lo molecule-class-info-bonds.lo molecule-class-info-build.lo molecule-class-info-maps.lo molecule-class-info-maps-2.lo molecule-class-info-molecular-symmetry.lo molecule-class-info-kdc.lo molecule-class-info-dots.lo molecule-class-info-dots-internal.lo molecule-class-info-other.lo molecule-class-info-mutate.lo molecule-class-info-residues.lo molecule-class-info-refine.lo molecule-class-info-kk.lo molecule-class-info-surface.lo molecule-class-info-string.lo molecule-class-info-patterson.lo molecule-class-info-ncs.lo molecule-class-info-mol-tris.lo molecule-class-info-widget-work.lo molecule-class-info-geometry.lo molecular-mesh-generator.lo molecular-mesh-generator-mol-tris.lo obj_loader.lo pick.lo positron-plot.lo probe-clash-score.lo protein_db-interface.lo pumpkin.lo python-classes.lo Particle.lo read-phs.lo read-cif.lo rama_mousey.lo rama_plot_with_canvas.lo text-rendering-utils.lo restraints-editor.lo rsr-functions.lo screendump-tga.lo sdf-interface.lo sequence-view.lo seq-view-interface.lo Shader.lo sound.lo startup-utils.lo testing.lo testing-2.lo Texture.lo TextureMesh.lo tomo-tools.lo trackball.lo user-mods.lo xmap-utils.lo rama-plot-phi-psi.lo spherical-density.lo single-map-properties-dialog.lo validation.lo view.lo widget-from-builder.lo -fopenmp ../api/libcoot-api.la ../pli/libcoot-pli.la ../layla/libcoot-layla.la ../ligand/libcoot-res-tracer.la ../ligand/libcoot-ligand.la ../validation-graphs/libcoot-validation-graphs.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../compat/libcoot-compat.la -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lm -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lfreetype -lsqlite3 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/src; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcootsumo.la -rpath /usr/lib/aarch64-linux-gnu init_coot_as_python_module.lo boids.lo boot-python.lo atom-overlaps.lo git-revision-count.lo scm-boot-guile.lo c-interface-analysis.lo c-interface-bonds.lo c-interface-build.lo c-interface-build-morph.lo c-interface-build-main-chain.lo c-interface-build-side-chain.lo c-interface-build-symmetry.lo c-interface-build-gui.lo c-interface-curlew.lo c-interface-database.lo c-interface-gui.lo c-interface-gtk2.lo c-interface-info.lo c-interface-kk.lo c-interface-image.lo c-interface-ligands-gui.lo c-interface-ligands.lo c-interface-maps.lo c-interface-mmdb.lo c-interface-mogul.lo c-interface-mogul-scripting.lo c-interface-mutate.lo c-interface-ncs.lo c-interface-network.lo c-interface-nucleotides.lo c-interface-pisa.lo c-interface-pisa-gui.lo c-interface-preferences.lo c-interface-python.lo c-interface-refine.lo c-interface-residues.lo c-interface-refmac.lo simple-refmac.lo c-interface-scm.lo c-interface-sequence.lo c-interface-sfs.lo c-interface-sharpen.lo c-interface-superpose.lo c-interface-validate.lo c-interface-view.lo c-interface-widgets.lo c-interface-waters.lo c-interface-waters-gui.lo c-interface.lo c-interface-test.lo cc-interface-alignment.lo cc-interface-graphics.lo cc-interface-merge.lo cc-interface-molecular-representation.lo cc-interface-molecular-symmetry.lo cc-interface-scripting.lo cc-interface-map-utils.lo cc-interface-png.lo cc-interface-user-defined-atom-colours.lo cfc.lo change-dir.lo cmtz-interface.lo command-line.lo command-line-extern.lo coot-application.lo coot-colour.lo coot-align.lo coot-nomenclature.lo coot-glue-gtk2.lo coot-glue-gtk2-python.lo coot-hydrogens.lo coot-phi-psi.lo coot_pythonmodule.lo coot-setup-python.lo coot_wrap_guile.lo curlew-gtk4.lo draw.lo graphics-info-tick-function.lo drag-and-drop.lo draw-generic-display-objects.lo dynamic-validation.lo eyes.lo event-controller-callbacks.lo fit-loop-gui.lo flev.lo framebuffer.lo old-generic-display-object.lo gaussian-surface.lo generic-objects.lo geometry-graphs.lo get-residue.lo get-monomer.lo gl-rama-plot.lo globjects.lo globularize.lo graphics-info.lo graphics-info-defines.lo graphics-info-defines-gtk4.lo graphics-info-draw.lo graphics-info-draw-models.lo graphics-info-graphs.lo graphics-info-gui.lo graphics-info-init.lo graphics-info-intermediate.lo graphics-info-modelling.lo graphics-info-navigation.lo graphics-info-navigation-gtk2.lo graphics-info-preferences.lo graphics-info-network.lo graphics-info-mutate.lo graphics-info-lsq.lo graphics-info-opengl.lo graphics-info-pick.lo graphics-info-refmac.lo graphics-info-render.lo graphics-info-render-scene.lo graphics-info-residues.lo graphics-info-refine.lo graphics-info-scripting.lo graphics-info-state.lo graphics-info-statics.lo graphics-info-superpose.lo graphics-info-trackball.lo graphics-ligand-view.lo graphics-ligand-mesh-molecule.lo gl-matrix.lo gtkglarea-rama-plot.lo gtk-manual.lo gtk-widget-conversion-utils.lo gtk-utils.lo HUDMesh.lo HUDTextureMesh.lo Instanced-Markup-Mesh.lo init-from-gtkbuilder.lo key-bindings.lo LinesMesh.lo LigandViewMesh.lo lbg-callbacks-outer.lo lbg-interface.lo Model.lo make-a-dodec.lo matrix-utils.lo Mesh.lo Mesh-from-glTF.lo Mesh-from-graphical-bonds-instanced.lo Mesh-from-graphical-bonds.lo meshed-generic-display-object.lo model-molecule-meshes.lo molecule-class-info.lo molecule-class-info-alignment.lo molecule-class-info-analysis.lo molecule-class-info-bonds.lo molecule-class-info-build.lo molecule-class-info-maps.lo molecule-class-info-maps-2.lo molecule-class-info-molecular-symmetry.lo molecule-class-info-kdc.lo molecule-class-info-dots.lo molecule-class-info-dots-internal.lo molecule-class-info-other.lo molecule-class-info-mutate.lo molecule-class-info-residues.lo molecule-class-info-refine.lo molecule-class-info-kk.lo molecule-class-info-surface.lo molecule-class-info-string.lo molecule-class-info-patterson.lo molecule-class-info-ncs.lo molecule-class-info-mol-tris.lo molecule-class-info-widget-work.lo molecule-class-info-geometry.lo molecular-mesh-generator.lo molecular-mesh-generator-mol-tris.lo obj_loader.lo pick.lo positron-plot.lo probe-clash-score.lo protein_db-interface.lo pumpkin.lo python-classes.lo Particle.lo read-phs.lo read-cif.lo rama_mousey.lo rama_plot_with_canvas.lo text-rendering-utils.lo restraints-editor.lo rsr-functions.lo screendump-tga.lo sdf-interface.lo sequence-view.lo seq-view-interface.lo Shader.lo sound.lo startup-utils.lo testing.lo testing-2.lo Texture.lo TextureMesh.lo tomo-tools.lo trackball.lo user-mods.lo xmap-utils.lo rama-plot-phi-psi.lo spherical-density.lo single-map-properties-dialog.lo validation.lo view.lo widget-from-builder.lo -fopenmp ../api/libcoot-api.la ../pli/libcoot-pli.la ../layla/libcoot-layla.la ../ligand/libcoot-res-tracer.la ../ligand/libcoot-ligand.la ../validation-graphs/libcoot-validation-graphs.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../MoleculesToTriangles/CXXClasses/libMoleculesToTrianglesCXXClasses.la ../MoleculesToTriangles/CXXSurface/libMoleculesToTrianglesCXXSurface.la ../compat/libcoot-compat.la -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lssm -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lepoxy -lgsl -lgslcblas -lm -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lfreetype -lsqlite3 -lpthread -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/init_coot_as_python_module.o .libs/boids.o .libs/boot-python.o .libs/atom-overlaps.o .libs/git-revision-count.o .libs/scm-boot-guile.o .libs/c-interface-analysis.o .libs/c-interface-bonds.o .libs/c-interface-build.o .libs/c-interface-build-morph.o .libs/c-interface-build-main-chain.o .libs/c-interface-build-side-chain.o .libs/c-interface-build-symmetry.o .libs/c-interface-build-gui.o .libs/c-interface-curlew.o .libs/c-interface-database.o .libs/c-interface-gui.o .libs/c-interface-gtk2.o .libs/c-interface-info.o .libs/c-interface-kk.o .libs/c-interface-image.o .libs/c-interface-ligands-gui.o .libs/c-interface-ligands.o .libs/c-interface-maps.o .libs/c-interface-mmdb.o .libs/c-interface-mogul.o .libs/c-interface-mogul-scripting.o .libs/c-interface-mutate.o .libs/c-interface-ncs.o .libs/c-interface-network.o .libs/c-interface-nucleotides.o .libs/c-interface-pisa.o .libs/c-interface-pisa-gui.o .libs/c-interface-preferences.o .libs/c-interface-python.o .libs/c-interface-refine.o .libs/c-interface-residues.o .libs/c-interface-refmac.o .libs/simple-refmac.o .libs/c-interface-scm.o .libs/c-interface-sequence.o .libs/c-interface-sfs.o .libs/c-interface-sharpen.o .libs/c-interface-superpose.o .libs/c-interface-validate.o .libs/c-interface-view.o .libs/c-interface-widgets.o .libs/c-interface-waters.o .libs/c-interface-waters-gui.o .libs/c-interface.o .libs/c-interface-test.o .libs/cc-interface-alignment.o .libs/cc-interface-graphics.o .libs/cc-interface-merge.o .libs/cc-interface-molecular-representation.o .libs/cc-interface-molecular-symmetry.o .libs/cc-interface-scripting.o .libs/cc-interface-map-utils.o .libs/cc-interface-png.o .libs/cc-interface-user-defined-atom-colours.o .libs/cfc.o .libs/change-dir.o .libs/cmtz-interface.o .libs/command-line.o .libs/command-line-extern.o .libs/coot-application.o .libs/coot-colour.o .libs/coot-align.o .libs/coot-nomenclature.o .libs/coot-glue-gtk2.o .libs/coot-glue-gtk2-python.o .libs/coot-hydrogens.o .libs/coot-phi-psi.o .libs/coot_pythonmodule.o .libs/coot-setup-python.o .libs/coot_wrap_guile.o .libs/curlew-gtk4.o .libs/draw.o .libs/graphics-info-tick-function.o .libs/drag-and-drop.o .libs/draw-generic-display-objects.o .libs/dynamic-validation.o .libs/eyes.o .libs/event-controller-callbacks.o .libs/fit-loop-gui.o .libs/flev.o .libs/framebuffer.o .libs/old-generic-display-object.o .libs/gaussian-surface.o .libs/generic-objects.o .libs/geometry-graphs.o .libs/get-residue.o .libs/get-monomer.o .libs/gl-rama-plot.o .libs/globjects.o .libs/globularize.o .libs/graphics-info.o .libs/graphics-info-defines.o .libs/graphics-info-defines-gtk4.o .libs/graphics-info-draw.o .libs/graphics-info-draw-models.o .libs/graphics-info-graphs.o .libs/graphics-info-gui.o .libs/graphics-info-init.o .libs/graphics-info-intermediate.o .libs/graphics-info-modelling.o .libs/graphics-info-navigation.o .libs/graphics-info-navigation-gtk2.o .libs/graphics-info-preferences.o .libs/graphics-info-network.o .libs/graphics-info-mutate.o .libs/graphics-info-lsq.o .libs/graphics-info-opengl.o .libs/graphics-info-pick.o .libs/graphics-info-refmac.o .libs/graphics-info-render.o .libs/graphics-info-render-scene.o .libs/graphics-info-residues.o .libs/graphics-info-refine.o .libs/graphics-info-scripting.o .libs/graphics-info-state.o .libs/graphics-info-statics.o .libs/graphics-info-superpose.o .libs/graphics-info-trackball.o .libs/graphics-ligand-view.o .libs/graphics-ligand-mesh-molecule.o .libs/gl-matrix.o .libs/gtkglarea-rama-plot.o .libs/gtk-manual.o .libs/gtk-widget-conversion-utils.o .libs/gtk-utils.o .libs/HUDMesh.o .libs/HUDTextureMesh.o .libs/Instanced-Markup-Mesh.o .libs/init-from-gtkbuilder.o .libs/key-bindings.o .libs/LinesMesh.o .libs/LigandViewMesh.o .libs/lbg-callbacks-outer.o .libs/lbg-interface.o .libs/Model.o .libs/make-a-dodec.o .libs/matrix-utils.o .libs/Mesh.o .libs/Mesh-from-glTF.o .libs/Mesh-from-graphical-bonds-instanced.o .libs/Mesh-from-graphical-bonds.o .libs/meshed-generic-display-object.o .libs/model-molecule-meshes.o .libs/molecule-class-info.o .libs/molecule-class-info-alignment.o .libs/molecule-class-info-analysis.o .libs/molecule-class-info-bonds.o .libs/molecule-class-info-build.o .libs/molecule-class-info-maps.o .libs/molecule-class-info-maps-2.o .libs/molecule-class-info-molecular-symmetry.o .libs/molecule-class-info-kdc.o .libs/molecule-class-info-dots.o .libs/molecule-class-info-dots-internal.o .libs/molecule-class-info-other.o .libs/molecule-class-info-mutate.o .libs/molecule-class-info-residues.o .libs/molecule-class-info-refine.o .libs/molecule-class-info-kk.o .libs/molecule-class-info-surface.o .libs/molecule-class-info-string.o .libs/molecule-class-info-patterson.o .libs/molecule-class-info-ncs.o .libs/molecule-class-info-mol-tris.o .libs/molecule-class-info-widget-work.o .libs/molecule-class-info-geometry.o .libs/molecular-mesh-generator.o .libs/molecular-mesh-generator-mol-tris.o .libs/obj_loader.o .libs/pick.o .libs/positron-plot.o .libs/probe-clash-score.o .libs/protein_db-interface.o .libs/pumpkin.o .libs/python-classes.o .libs/Particle.o .libs/read-phs.o .libs/read-cif.o .libs/rama_mousey.o .libs/rama_plot_with_canvas.o .libs/text-rendering-utils.o .libs/restraints-editor.o .libs/rsr-functions.o .libs/screendump-tga.o .libs/sdf-interface.o .libs/sequence-view.o .libs/seq-view-interface.o .libs/Shader.o .libs/sound.o .libs/startup-utils.o .libs/testing.o .libs/testing-2.o .libs/Texture.o .libs/TextureMesh.o .libs/tomo-tools.o .libs/trackball.o .libs/user-mods.o .libs/xmap-utils.o .libs/rama-plot-phi-psi.o .libs/spherical-density.o .libs/single-map-properties-dialog.o .libs/validation.o .libs/view.o .libs/widget-from-builder.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-api -lcoot-pli -lcoot-layla -lcoot-res-tracer -lcoot-ligand -lcoot-validation-graphs -lcoot-lidia-core -lcoot-isosurface -lcoot-cabuild -lcoot-skeleton -lcoot-AngleInfo -lcoot-db-main -lcoot-high-res -lcoot-ideal -lcoot-geometry -lcoot-coords -lccp4mg-utils -lcoot-map-heavy -lcoot-map-utils -lcoot-coord-extras -lcoot-coord-utils -lcoot-utils -lcoot-mini-mol -lcoot-analysis -lcoot-protein-db -lcootilus -lcootaneer -lMoleculesToTrianglesCXXClasses -lMoleculesToTrianglesCXXSurface -lcoot-compat -lvorbisfile -lasound -lgtk-4 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -lgdk_pixbuf-2.0 -lcairo-gobject -lcairo -lvulkan -lgraphene-1.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lssm -lmmdb2 -lpython3.13 -lepoxy -lgsl -lgslcblas -lblas -lcurl -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lfreetype -lsqlite3 -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -fopenmp -Wl,-soname -Wl,libcootsumo.so.0 -o .libs/libcootsumo.so.0.0.0 libtool: install: /usr/bin/install -c .libs/libcootsumo.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libcootsumo.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libcootsumo.so.0.0.0 libcootsumo.so.0 || { rm -f libcootsumo.so.0 && ln -s libcootsumo.so.0.0.0 libcootsumo.so.0; }; }) @@ -25689,7 +25725,7 @@ /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/install -c coot coot-density-score-by-residue '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' - /bin/bash ../libtool --mode=install /usr/bin/install -c Coot coot-density-score-by-residue-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' + /bin/sh ../libtool --mode=install /usr/bin/install -c Coot coot-density-score-by-residue-bin '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec' libtool: warning: 'libcootsumo.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../density-contour/libcoot-isosurface.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../layla/libcoot-layla.la' has not been installed in '/usr/lib/aarch64-linux-gnu' @@ -25719,9 +25755,9 @@ libtool: warning: '../compat/libcoot-compat.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/coot-density-score-by-residue-bin /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/libexec/coot-density-score-by-residue-bin /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' - /bin/bash ../libtool --mode=install /usr/bin/install -c _coot.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' + /bin/sh ../libtool --mode=install /usr/bin/install -c _coot.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_coot.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/src; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined libcootsumo.la ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../geometry/libcoot-geometry.la ../pli/libcoot-pli.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o _coot.la -rpath /usr/lib/python3/dist-packages coot.lo coot_wrap_python.lo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/src; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DPKGPYTHONDIR=\"/usr/lib/python3/dist-packages/coot\" -DPYTHONDIR=\"/usr/lib/python3/dist-packages\" -DXDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-aarch64-debian-trixie-sid-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/usr/lib/python3/dist-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/usr/include/python3.13 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module --no-undefined libcootsumo.la ../coot-utils/libcoot-coord-utils.la ../coords/libcoot-coords.la ../geometry/libcoot-geometry.la ../pli/libcoot-pli.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-z,relro -o _coot.la -rpath /usr/lib/python3/dist-packages coot.lo coot_wrap_python.lo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/coot.o .libs/coot_wrap_python.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcootsumo -lcoot-coord-utils -lcoot-coords -lcoot-geometry -lcoot-pli -lcoot-lidia-core -lcoot-utils -lpython3.13 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,_coot.so.0 -o .libs/_coot.so.0.0.0 libtool: install: /usr/bin/install -c .libs/_coot.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_coot.so.0.0.0 libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages && { ln -s -f _coot.so.0.0.0 _coot.so.0 || { rm -f _coot.so.0 && ln -s _coot.so.0.0.0 _coot.so.0; }; }) @@ -25935,16 +25971,16 @@ make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pyrogen' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install install --strip-program=true libcoot_py_restraints.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' - /bin/bash ../libtool --mode=install install --strip-program=true libcoot_py_restraints.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' install --strip-program=true pyrogen '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/bin' install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 pyrogen.py atom_types.py jay_util.py tautomer.py pyrogen_swig.py coot_git.py '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/coot' install: WARNING: ignoring --strip-program option as -s option was not specified +libtool: warning: relinking 'libcoot_py_restraints.la' +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) Byte-compiling python modules... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py -libtool: warning: relinking 'libcoot_py_restraints.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot_py_restraints.la -rpath /usr/lib/aarch64-linux-gnu mmff-restraints.lo py-restraints.lo cairo-molecule.lo atom_types.lo ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) Byte-compiling python modules (optimized versions) ... pyrogen.pyatom_types.pyjay_util.pytautomer.pypyrogen_swig.pycoot_git.py libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/mmff-restraints.o .libs/py-restraints.o .libs/cairo-molecule.o .libs/atom_types.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot-geometry -lcoot-lidia-core -lcoot-utils -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot_py_restraints.so.0 -o .libs/libcoot_py_restraints.so.0.0.0 @@ -25956,9 +25992,9 @@ install: WARNING: ignoring --strip-program option as -s option was not specified libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' - /bin/bash ../libtool --mode=install install --strip-program=true _pyrogen_swig.la pyrogen_boost.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' + /bin/sh ../libtool --mode=install install --strip-program=true _pyrogen_swig.la pyrogen_boost.la '/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages' libtool: warning: relinking '_pyrogen_swig.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o _pyrogen_swig.la -rpath /usr/lib/python3/dist-packages pyrogen-swig.lo restraints.lo libcoot_py_restraints.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../analysis/libcoot-analysis.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/aarch64-linux-gnu -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 -L/usr/lib/aarch64-linux-gnu -lpython3.13 -lcairo -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/pyrogen-swig.o .libs/restraints.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-ideal -lcoot-coord-utils -lcoot-lidia-core -lcoot-analysis -lcoot-geometry -lcoot-utils -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lpython3.13 -lcairo -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-soname -Wl,_pyrogen_swig.so.0 -o .libs/_pyrogen_swig.so.0.0.0 libtool: install: install --strip-program=true .libs/_pyrogen_swig.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.so.0.0.0 install: WARNING: ignoring --strip-program option as -s option was not specified @@ -25967,7 +26003,7 @@ libtool: install: install --strip-program=true .libs/_pyrogen_swig.lai /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/_pyrogen_swig.la install: WARNING: ignoring --strip-program option as -s option was not specified libtool: warning: relinking 'pyrogen_boost.la' -libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/bash "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) +libtool: install: (cd /build/reproducible-path/coot-1.1.09+dfsg/pyrogen; /bin/sh "/build/reproducible-path/coot-1.1.09+dfsg/libtool" --tag CXX --mode=relink g++ -DPKGDATADIR=\"/usr/share/coot\" -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -Wno-unused -std=c++17 -module -Wl,-z,relro -o pyrogen_boost.la -rpath /usr/lib/python3/dist-packages restraints-boost.lo libcoot_py_restraints.la ../pli/libcoot-pli.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -inst-prefix-dir /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/14/crtbeginS.o .libs/restraints-boost.o -L/build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lcoot_py_restraints -lcoot-pli -lcoot-ideal -lcoot-coord-utils -lcoot-geometry -lcoot-coords -lcoot-lidia-core -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -lboost_python312 -L/usr/lib/gcc/aarch64-linux-gnu/14 -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/14/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/14/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/14/../../../aarch64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -fopenmp -Wl,-soname -Wl,pyrogen_boost.so.0 -o .libs/pyrogen_boost.so.0.0.0 libtool: install: install --strip-program=true .libs/pyrogen_boost.so.0.0.0T /build/reproducible-path/coot-1.1.09+dfsg/debian/tmp/usr/lib/python3/dist-packages/pyrogen_boost.so.0.0.0 install: WARNING: ignoring --strip-program option as -s option was not specified @@ -26055,20 +26091,20 @@ diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged -dpkg-shlibdeps: warning: symbol _ZN4coot4util16density_at_pointERKN7clipper4XmapIfEERKNS1_10Coord_orthE used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN4coot4util13calc_atom_mapEPN4mmdb7ManagerEiRKN7clipper4CellERKNS4_10SpacegroupERKNS4_13Grid_samplingE used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN4coot4util7extentsEPN4mmdb7ManagerEi used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN4coot4util16sharpen_blur_mapEPN7clipper4XmapIfEEf used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol inflateEnd used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol inflate used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol cairo_destroy used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-api.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol cairo_get_reference_count used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-api.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.cpython-313-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_GivenExceptionMatches: it's probably a plugin +dpkg-shlibdeps: warning: symbol cairo_destroy used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-api.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: debian/coot/usr/lib/python3/dist-packages/_coot_headless_api.cpython-313-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyCFunction_Type: it's probably a plugin dpkg-shlibdeps: warning: 93 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: symbol _ZN4coot4util13int_to_stringB5cxx11Ei used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-pli.so.0.0.0 found in none of the libraries -dpkg-shlibdeps: warning: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.cpython-313-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin +dpkg-shlibdeps: warning: debian/coot/usr/lib/python3/dist-packages/pyrogen_boost.cpython-313-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflate used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflateEnd used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN4coot4util13int_to_stringB5cxx11Ei used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-pli.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN4coot4util16sharpen_blur_mapEPN7clipper4XmapIfEEf used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN4coot4util16density_at_pointERKN7clipper4XmapIfEERKNS1_10Coord_orthE used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN4coot4util13calc_atom_mapEPN4mmdb7ManagerEiRKN7clipper4CellERKNS4_10SpacegroupERKNS4_13Grid_samplingE used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN4coot4util7extentsEPN4mmdb7ManagerEi used by debian/coot/usr/lib/aarch64-linux-gnu/coot/libcoot-isosurface.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coot/usr/lib/aarch64-linux-gnu/coot/libcootsumo.so.0.0.0 was not linked against libblas.so.3 (it uses none of the library's symbols) make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_installdeb @@ -26076,13 +26112,13 @@ dpkg-gencontrol: warning: Depends field of package libcootapi-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb +dpkg-deb: building package 'coot' in '../coot_1.1.09+dfsg-4_arm64.deb'. +dpkg-deb: building package 'coot-dbgsym' in '../coot-dbgsym_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'coot-data' in '../coot-data_1.1.09+dfsg-4_all.deb'. +dpkg-deb: building package 'coot-doc' in '../coot-doc_1.1.09+dfsg-4_all.deb'. dpkg-deb: building package 'libcootapi-dev' in '../libcootapi-dev_1.1.09+dfsg-4_arm64.deb'. -dpkg-deb: building package 'coot-dbgsym' in '../coot-dbgsym_1.1.09+dfsg-4_arm64.deb'. -dpkg-deb: building package 'coot' in '../coot_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'libcootapi1.1-dbgsym' in '../libcootapi1.1-dbgsym_1.1.09+dfsg-4_arm64.deb'. dpkg-deb: building package 'libcootapi1.1' in '../libcootapi1.1_1.1.09+dfsg-4_arm64.deb'. -dpkg-deb: building package 'coot-doc' in '../coot-doc_1.1.09+dfsg-4_all.deb'. dpkg-genbuildinfo --build=binary -O../coot_1.1.09+dfsg-4_arm64.buildinfo dpkg-genchanges --build=binary -O../coot_1.1.09+dfsg-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -26090,12 +26126,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/307709/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/307709/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2425547 and its subdirectories -I: Current time: Wed Jan 22 07:06:26 -12 2025 -I: pbuilder-time-stamp: 1737572787 +I: removing directory /srv/workspace/pbuilder/307709 and its subdirectories +I: Current time: Wed Feb 25 15:59:43 +14 2026 +I: pbuilder-time-stamp: 1771984783 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/coot_1.1.09+dfsg-4.diff: 96.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/coot_1.1.09+dfsg-4.diff.gz b2/build.log: 94.8% -- replaced with stdout Compressing the 1st log... b1/build.log: 94.8% -- replaced with stdout Wed Jan 22 19:37:00 UTC 2025 I: diffoscope 285 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_coot_unstable_arm64_1737574620 + touch /var/log/reproducible-builds/diffoscope_stamp_coot_unstable_arm64_1737574620 + RESULT=0 + systemd-run '--description=diffoscope on coot/1.1.09+dfsg-4 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_12-79208 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd --run-session -c jenkins-reproducible-unstable-diffoscope-b4175e4c-b85d-4d02-928e-6413cfe4b79a -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/dbd-tmp-VT3tPCh ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/coot_1.1.09+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/coot_1.1.09+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/coot_1.1.09+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b1/coot_1.1.09+dfsg-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b2/coot_1.1.09+dfsg-4_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_12-79208.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/coot_1.1.09+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/coot_1.1.09+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/coot_1.1.09+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b1/coot_1.1.09+dfsg-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.eKzqcYtd/b2/coot_1.1.09+dfsg-4_arm64.changes ## close_archive (total time: 0.000s) 0.000s 8 calls diffoscope.comparators.xz.XzContainer 0.000s 6 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.gzip.GzipContainer ## command (total time: 2.510s) 1.201s 12 calls xz 0.475s 6 calls cmp 0.475s 6 calls cmp (external) 0.353s 13 calls diff 0.004s 2 calls gzip 0.002s 19 calls cmp (internal) ## compare_files (cumulative) (total time: 11.074s) 3.551s 1 call abc.DotChangesFile 2.899s 2 calls abc.DebFile 2.769s 4 calls abc.XzFile 1.455s 2 calls abc.DebDataTarFile 0.194s 4 calls abc.TextFile 0.090s 1 call abc.GzipFile 0.080s 2 calls abc.TarFile 0.035s 2 calls abc.Md5sumsFile ## container_extract (total time: 1.791s) 1.202s 12 calls diffoscope.comparators.xz.XzContainer 0.523s 1564 calls diffoscope.comparators.deb.DebTarContainer 0.056s 16 calls diffoscope.comparators.deb.DebContainer 0.006s 12 calls diffoscope.comparators.tar.TarContainer 0.004s 2 calls diffoscope.comparators.gzip.GzipContainer ## diff (total time: 0.013s) 0.013s 13 calls linediff ## has_same_content_as (total time: 0.479s) 0.461s 7 calls abc.DebFile 0.016s 2 calls abc.DebDataTarFile 0.001s 8 calls abc.TextFile 0.000s 4 calls abc.Md5sumsFile 0.000s 2 calls abc.TarFile 0.000s 4 calls abc.XzFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.GzipFile ## main (total time: 7.427s) 7.071s 2 calls outputs 0.356s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 8 calls diffoscope.comparators.tar.TarContainer 0.000s 12 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.deb.DebTarContainer 0.000s 4 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.gzip.GzipContainer ## output (total time: 0.112s) 0.111s 1 call html 0.001s 1 call text 0.001s 1 call json ## recognizes (total time: 3.448s) 3.080s 12 calls diffoscope.comparators.binary.FilesystemFile 0.174s 378 calls diffoscope.comparators.debian.DebControlMember 0.140s 1226 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.053s 568 calls diffoscope.comparators.utils.archive.ArchiveMember ## specialize (total time: 0.343s) 0.343s 29 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 7.762s CPU time consumed: 8.423s Wed Jan 22 19:37:08 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Wed Jan 22 19:37:08 UTC 2025 E: coot failed to build reproducibly in unstable on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-01-22 19:37:09] INFO: Starting at 2025-01-22 19:37:09.484462 [2025-01-22 19:37:09] INFO: Generating the pages of 1 package(s) [2025-01-22 19:37:09] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/coot didn't produce a buildlog, even though it has been built. [2025-01-22 19:37:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/coot_1.1.09+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/coot_1.1.09+dfsg-3.diff.gz is missing [2025-01-22 19:37:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/coot_1.1.09+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/coot_1.1.09+dfsg-3.diff.gz is missing [2025-01-22 19:37:09] INFO: Finished at 2025-01-22 19:37:09.630486, took: 0:00:00.146028 Wed Jan 22 19:37:09 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/coot.html Wed Jan 22 19:37:09 UTC 2025 I: Submitting .buildinfo files to external archives: Wed Jan 22 19:37:09 UTC 2025 I: Submitting 24K b1/coot_1.1.09+dfsg-4_arm64.buildinfo.asc https://buildinfo.debian.net/124520906e482d910841fd188446e16fb7370f46/coot_1.1.09+dfsg-4_all Wed Jan 22 19:37:11 UTC 2025 I: Submitting 24K b2/coot_1.1.09+dfsg-4_arm64.buildinfo.asc https://buildinfo.debian.net/1cc1a4b8b2d03a1d13e14ac13c13e63b5e125862/coot_1.1.09+dfsg-4_all Wed Jan 22 19:37:12 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jan 22 19:37:12 UTC 2025 I: Done submitting .buildinfo files. Wed Jan 22 19:37:12 UTC 2025 I: Removing signed coot_1.1.09+dfsg-4_arm64.buildinfo.asc files: removed './b1/coot_1.1.09+dfsg-4_arm64.buildinfo.asc' removed './b2/coot_1.1.09+dfsg-4_arm64.buildinfo.asc' 1737574632 arm64 unstable coot Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/coot_1.1.09+dfsg-4.rbuild.log: 94.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/coot_1.1.09+dfsg-4.rbuild.log.gz [2025-01-22 19:37:12] INFO: Starting at 2025-01-22 19:37:12.854115 [2025-01-22 19:37:12] INFO: Generating the pages of 1 package(s) [2025-01-22 19:37:13] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/coot_1.1.09+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/coot_1.1.09+dfsg-3.diff.gz is missing [2025-01-22 19:37:13] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/coot_1.1.09+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/coot_1.1.09+dfsg-3.diff.gz is missing [2025-01-22 19:37:13] INFO: Finished at 2025-01-22 19:37:13.020529, took: 0:00:00.166422 All cleanup done. Wed Jan 22 19:37:13 UTC 2025 - total duration: 1h 3m 30s. Wed Jan 22 19:37:13 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-bTUV0tqJ, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1h 3min 34.803s CPU time consumed: 22.660s